Merge branch 'master' of github.com:fuxialexander/getdemo

.github/workflows/docker-build-and-push.yml

@@ -0,0 +1,35 @@
+name: Docker Build and Push
+
+on:
+  push:
+    branches:
+      - master
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+      with:
+        token: ${{ secrets.TOKEN }}
+        submodules: 'recursive'
+        lfs: 'true'
+
+
+    - name: Set up Docker
+      uses: docker/setup-buildx-action@v3
+
+    - name: Login to DockerHub
+      uses: docker/login-action@v3
+      with:
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_PASSWORD }}
+      
+    - name: Build and push Docker image
+      uses: docker/build-push-action@v3
+      with:
+        context: .
+        push: true
+        tags: fuxialexander/getdemo:latest

Dockerfile

@@ -53,8 +53,8 @@ RUN micromamba clean --all --yes
 WORKDIR /app
 
 # Make port 80 available to the world outside this container
-EXPOSE 7681
+EXPOSE 7860
 # Set the working directory where your app resides
 
 # Command to run the Gradio app automatically
-CMD ["python", "app/main.py", "-p", "7681", "-s", "-u", "s3://2023-get-xf2217/get_demo_test_data", "-d", "/data"]
+CMD ["python", "app/main.py", "-p", "7860", "-s", "-u", "s3://2023-get-xf2217/get_demo_test_data", "-d", "/data"]

app/main.py

@@ -29,6 +29,7 @@ args.add_argument("-p", "--port", type=int, default=7860, help="Port number")
 args.add_argument("-s", "--share", action="store_true", help="Share on network")
 args.add_argument("-u", "--s3_uri", type=str, default=None, help="Path to demo S3 bucket")
 args.add_argument("-d", "--data", type=str, default=None, help="Data directory")
+args.add_argument("-n", "--host", type=str, default="127.0.0.1")
 args = args.parse_args()
 
 GET_CONFIG = load_config(
@@ -360,4 +361,4 @@ You can download specific segment pair PDB files by clicking 'Get PDB.'
             outputs=[subnet_plot, cell],
         )
 
-    demo.launch(share=args.share, server_port=args.port)
+    demo.launch(server_name=args.host, share=args.share, server_port=args.port)

modules/atac_rna_data_processing

@@ -1 +1 @@
-Subproject commit 3b3aa98cbb86c9161886afb0f423e687a06d73ec
+Subproject commit e3591f6a18614b73484b13aa242f75971334f80d