Update app.py

app.py

@@ -56,6 +56,11 @@ df2 = pd.read_csv('cohort_cc_adm_diag.csv')
 df3 = pd.read_csv('cohort_past_history_12072022.csv')
 df3.sort_values(by='CHARTDATE',ascending = False, inplace=True)
 
+# Loading in Daily Narrative 
+df4 = pd.read_csv('24hourevents.csv')
+df4.sort_values(by=['SUBJECT_ID','HADM_ID','STORETIME'],ascending = False, inplace=True)
+
+
 # combining both data into one 
 df = pd.merge(df, df2, on=['HADM_ID','SUBJECT_ID'])
 
@@ -65,6 +70,7 @@ del df2
 # Remove decimal point from Admission ID
 df['HADM_ID'] = df['HADM_ID'].astype(str).apply(lambda x: x.replace('.0',''))
 df3['HADM_ID'] = df3['HADM_ID'].astype(str).apply(lambda x: x.replace('.0',''))
+df4['HADM_ID'] = df4['HADM_ID'].astype(str).apply(lambda x: x.replace('.0',''))
 df3['INDEX_HADM_ID'] = df3['INDEX_HADM_ID'].astype(str).apply(lambda x: x.replace('.0',''))
 df3["CHARTDATE_HADM_ID"] = df3["CHARTDATE"].astype(str) +' ('+ df3["HADM_ID"] +')'
 df3["DIAGNOSIS"] = df3["DIAGNOSIS"].str.capitalize()
@@ -84,6 +90,10 @@ df3.rename(columns={'SUBJECT_ID':'Patient_ID',
                    'HADM_ID':'PAST_Admission_ID',
                    'INDEX_HADM_ID':'Admission_ID'}, inplace = True) 
 
+df4.rename(columns={'SUBJECT_ID':'Patient_ID',
+                   'HADM_ID':'Admission_ID'}, inplace = True) 
+
+
 #Filter selection 
 st.sidebar.header("Search for Patient:")
 
@@ -116,6 +126,12 @@ AdmissionChiefCom = original_text['Admission_Chief_Complaint'].values
 diagnosis =original_text['DIAGNOSIS'].values
 reference_text = original_text['Reference_text'].values
 
+#dailyNoteChange = df4['_24_Hour_Events'].loc[(df4['Patient_ID'] == patient) & (df3['Admission_ID']== HospitalAdmission)] 
+dailyNoteChange =df4[['STORETIME','_24_Hour_Events']].loc[(df4['Patient_ID'] == patient) & (df4['Admission_ID']==HospitalAdmission) & df4['_24_Hour_Events'].notnull()]
+                        
+dailyNoteChange.rename(columns={'STORETIME':'Time of Record',
+                   '_24_Hour_Events':'Note Changes'}, inplace = True) 
+
 
 
 ##========= Buttons to the 5 tabs ======== Temp disabled Discharge Plan and Social Notes 
@@ -156,7 +172,7 @@ with st.container():
         with col7:
             #st.date_input('Select Admission Date') # To replace with a dropdown filter instead 
             #st.selectbox('Past Episodes',pastHistoryEp)
-            pastHistory = st.selectbox('Select Past History Admission', pastHistoryEpDate)
+            pastHistory = st.selectbox('Select Past History Admission', pastHistoryEpDate, format_func=lambda x: 'Select an option' if x == '' else x)
             
 if btnPastHistory:
     
@@ -165,8 +181,8 @@ if btnPastHistory:
                 "Patient_ID  == @patient & CHARTDATE_HADM_ID == @pastHistory"
                 )
     runtext = historyAdmission['hospital_course_processed'].values[0]
-      
-else:
+
+if not(btnPastHistory) and not(btnDailyNarrative):
     runtext =st.text_area(inputNote, str(original_text2)[1:-1], height=300)
     
     
@@ -315,7 +331,8 @@ def run_model(input_text):
 
 col1, col2 = st.columns([1,1])
 
-if not(btnPastHistory): #to not show summary and references text for Past History
+#to not show summary and references text for Past History and Daily Narrative
+if not(btnPastHistory) and not(btnDailyNarrative):
         with col1:
             st.button('Summarize')
             run_model(runtext)
@@ -341,7 +358,29 @@ if not(btnPastHistory): #to not show summary and references text for Past Histor
             st.markdown('**NER**')
             with st.expander("See NER Details"):
                 st.markdown(ent_html, unsafe_allow_html=True)
-else: 
+if btnDailyNarrative: 
+    with st.container():
+        st.markdown('Daily notes:') 
+        st.text_area('to input last day note','')
+ 
+    
+    with st.container():
+#        hide_table_row_index = """
+#                    <style>
+#                    thead tr th:first-child {display:none}
+#                    tbody th {display:none}
+#                    </style>
+#                    """
+#
+#        # Inject CSS with Markdown
+#        st.markdown(hide_table_row_index, unsafe_allow_html=True)
+#        st.table(dailyNoteChange)
+        styler = dailyNoteChange.style.hide_index()
+        st.write(styler.to_html(), unsafe_allow_html=True)
+
+
+#else:
+if btnPastHistory:
 # ===== Adding the Disease/Chemical into a list =====    
     problem_entities = list(dedupe([t for t in doc0.ents if t.label_ == 'DISEASE']))
     medication_entities = list(dedupe([t for t in doc0.ents if t.label_ == 'CHEMICAL']))