jschwaller commited on
Commit
3ab73a4
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1 Parent(s): be01886

Update app.py

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Files changed (1) hide show
  1. app.py +4 -3
app.py CHANGED
@@ -25,9 +25,10 @@ pred = transformers.pipeline("text-classification", model=model,
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  explainer = shap.Explainer(pred)
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- tokenizer = AutoTokenizer.from_pretrained("Clinical-AI-Apollo/Medical-NER")
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- model = AutoModelForTokenClassification.from_pretrained("Clinical-AI-Apollo/Medical-NER")
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- ner_pipe = pipeline("ner", model=ner_model, tokenizer=ner_tokenizer, aggregation_strategy="simple")
 
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  def adr_predict(x):
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  encoded_input = tokenizer(x, return_tensors='pt')
 
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  explainer = shap.Explainer(pred)
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+ ner_tokenizer = AutoTokenizer.from_pretrained("Clinical-AI-Apollo/Medical-NER")
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+ ner_model = AutoModelForTokenClassification.from_pretrained("Clinical-AI-Apollo/Medical-NER")
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+
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+ ner_pipe = pipeline("ner", model=ner_model, tokenizer=ner_tokenizer, aggregation_strategy="simple") # pass device=0 if using gpu
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  def adr_predict(x):
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  encoded_input = tokenizer(x, return_tensors='pt')