diff --git "a/spinoza_project/database_building/doc_parsing_and_vectorization.ipynb" "b/spinoza_project/database_building/doc_parsing_and_vectorization.ipynb" new file mode 100644--- /dev/null +++ "b/spinoza_project/database_building/doc_parsing_and_vectorization.ipynb" @@ -0,0 +1,6678 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Unzip data" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": { + "id": "0zL_SR2WsqDW" + }, + "outputs": [], + "source": [ + "import zipfile\n", + "with zipfile.ZipFile('Data.zip', 'r') as zip_ref:\n", + " zip_ref.extractall()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Install all libraries" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 1000 + }, + "collapsed": true, + "id": "3-hDvVTvEQil", + "outputId": "17d5e530-b544-4411-b4b1-abc7f1f98869" + }, + "outputs": [], + "source": [ + "%pip install -r /content/requirements.txt" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "collapsed": true, + "id": "c2OafNrNuMdW", + "outputId": "83e8a6ad-5ba5-4474-c937-ac5e54d8f0eb" + }, + "outputs": [], + "source": [ + "%pip install -U langchain-community\n", + "%pip install openpyxl\n", + "%pip install pypdf\n", + "%pip install --upgrade 'urllib3==1.26.7'" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": { + "id": "nnW8fUByzzSJ" + }, + "outputs": [], + "source": [ + "import pandas as pd\n", + "import os\n", + "import pickle\n", + "from tqdm import tqdm\n", + "from langchain_community.document_loaders import PyPDFLoader\n", + "from langchain.text_splitter import RecursiveCharacterTextSplitter\n", + "from langchain.vectorstores import Qdrant\n", + "from langchain.embeddings import HuggingFaceEmbeddings" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": { + "id": "5yHatyYzyhDr" + }, + "outputs": [], + "source": [ + "path_data = \"/content/Data/\"\n", + "path_raw = \"0 - Raw\"\n", + "path_parsed = \"1 - Parsed\"\n", + "path_vectorized = \"2 - Vectorized\"" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Parsing documents" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 89 + }, + "id": "v1Ecbat_yaU0", + "outputId": "ee3567c1-1461-477c-810e-c4b99f1e711a" + }, + "outputs": [], + "source": [ + "# fichier Excel de métadonnées des documents chargé\n", + "df_metadata = pd.read_excel(os.path.join(path_data, path_raw, \"metadata_raw.xlsx\"), skiprows=1)\n", + "\n", + "df_metadata" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "OfmfOHGvvl0C", + "outputId": "2a19fee6-2cfc-4d22-b527-741229b80f9b" + }, + "outputs": [], + "source": [ + "docs = []\n", + "for file_ in tqdm(os.listdir(os.path.join(path_data, path_raw))):\n", + " if \".pdf\" in file_:\n", + " # ici on utilise un loader pour charger le pdf, on peut aussi utiliser un loader pour charger des json, des fichiers texte, etc.\n", + " loader = PyPDFLoader(\n", + " file_path = os.path.join(path_data, path_raw, file_),\n", + " extract_images = False,\n", + " )\n", + " # preprompt à ajouter au début de chaque document pour indiquer le type de contenu (lié aux embeddings utilisés)\n", + " preprompt = \"passage: \"\n", + " # ici on utilise un text splitter pour découper le texte en morceaux de taille fixe\n", + " text_splitter = RecursiveCharacterTextSplitter(\n", + " chunk_size=256, chunk_overlap=50, length_function=lambda x: len(x.split())\n", + " )\n", + " splitted_docs = loader.load_and_split(text_splitter)\n", + "\n", + " df_metadata_file = df_metadata[df_metadata[\"file_name\"] == file_.replace(\".pdf\", \"\")]\n", + "\n", + " for doc in splitted_docs:\n", + " # on ajoute les métadonnées du fichier à chaque document, à adapter en fonction des métadonnées disponibles\n", + " dict_metadata = {}\n", + " dict_metadata[\"content_page_number\"] = 0\n", + " dict_metadata[\"content_sub_type\"] = \"Text\"\n", + " dict_metadata[\"file_name\"] = df_metadata_file[\"file_name\"].values[0]\n", + " dict_metadata[\"file_source_type\"] = df_metadata_file[\"file_source_type\"].values[0]\n", + " dict_metadata[\"file_source_sub_type\"] = \"Article\"\n", + " dict_metadata[\"file_url\"] = \"\"\n", + " dict_metadata[\"file_date_publishing\"] = df_metadata_file[\"file_source_type\"].values[0]\n", + " dict_metadata[\"file_filtering_modality\"] = df_metadata_file[\"file_filtering_modality\"].values[0]\n", + " dict_metadata[\"file_author\"] = \"\"\n", + " dict_metadata[\"file_title\"] = df_metadata_file[\"file_title\"].values[0]\n", + " dict_metadata[\"file_sub_title\"] = \"\"\n", + " dict_metadata[\"file_summary\"] = \"\"\n", + " dict_metadata[\"content_page_number\"] = doc.metadata[\"page\"]\n", + " doc.metadata = dict_metadata\n", + " doc.page_content = preprompt + doc.page_content\n", + "\n", + " docs += splitted_docs\n", + "\n", + " else:\n", + " pass" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "uopfqlryvnAe", + "outputId": "c2cd10d3-66ff-4040-8247-94512088b39a" + }, + "outputs": [], + "source": [ + "print(len(docs))\n", + "print(docs[0].metadata)\n", + "print(docs[0])" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Embeddings and vectorstore" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "metadata": { + "id": "tYZxsDmq3do9" + }, + "outputs": [], + "source": [ + "def embed_and_dump(docs, name_vector, embeddings, path_vectorized):\n", + " qdrant = Qdrant.from_documents(\n", + " docs,\n", + " embeddings,\n", + " location=\":memory:\"\n", + " )\n", + " db = os.path.join(path_data, path_vectorized, f'database_{name_vector}.pickle')\n", + " with open(db, 'wb') as f:\n", + " pickle.dump(qdrant, f)\n", + "\n", + " del qdrant" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 792, + "referenced_widgets": [ + "e6aedcb556084f7dad04061b08e1b22a", + "9742062727ba4502acaf80326c0bd415", + "693c69545dea4195be43ca5974b3d9cd", + "7871112177f447febf4939f5d2e5d6d9", + "2e994200b284445591288f280fc6d64d", + "42f1060b15d8430388b28d7cf2f006e3", + "7552eb567b324e3f83e44b5414203800", + "3b82d61d03b240419b94d0951af77509", + "5899ae516b384ebab613ea16b62a3531", + "d969d02650d4420a9083005b7555b5dd", + "4ad3438f90b94acaad0d3ef9e99c6bab", + "fe28b604c1b8476e8915120f0484d112", + "cb64db18d16f4dcebd57f507bf5bfdc0", + "53a5c20398534bcdb0d01cc018b07307", + "3901dd1f30024b76b93bab504f64ecae", + "936285d80009496cb9ea82b0242a495b", + 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"id": "P53yf6zu312i", + "outputId": "0b5c7be1-f716-4797-c3da-00e3f528ac86" + }, + "outputs": [], + "source": [ + "# ici on charge les embeddings via HuggingFace, on peut aussi utiliser d'autres embeddings\n", + "embed_model=embeddings = HuggingFaceEmbeddings(\n", + " model_name=\"intfloat/multilingual-e5-base\"\n", + ")\n", + "\n", + "preprompt=\"passage: \"" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "id": "6GJkkffsfkAn" + }, + "outputs": [], + "source": [ + "# on crée le vectorstore et on le sauvegarde sous format pickle\n", + "vector_name = \"Hackathon\"\n", + "embed_and_dump(docs, vector_name, embeddings, path_vectorized)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Quelques notes :\n", + "- Vu que le vectorstore est fait à partir de Qdrant \"in-memory\", on stocke les embeddings en local et par conséquent on aura un fichier d'au moins 1 Gb\n", + "- Si le volume de documents est important, la création du vecteur store peut prendre pas mal de temps et l'utilisation d'une GPU est fortement recommandé" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "id": "wTR71FwJgTT3" + }, + "source": [ + "# Testing the vectorstore" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "metadata": { + "id": "tXkO4v5VgYeU" + }, + "outputs": [], + "source": [ + "with open(os.path.join(path_data, path_vectorized, f'database_{vector_name}.pickle'), 'rb') as picklefile:\n", + " vectorstore = pickle.load(picklefile)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "qGL3B_s7hnV-", + "outputId": "c5b84a02-e549-4203-ddaf-0d793e85a6bb" + }, + "outputs": [], + "source": [ + "vectorstore.similarity_search_with_score(query=\"changement climatique ?\", k=5)" + ] + } + ], + "metadata": { + "colab": { + "provenance": [] + }, + "kernelspec": { + "display_name": "Python 3", + "name": "python3" + }, + 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