code/attention_modules.py

# coding: utf-8
# Code adopted from https://github.com/huggingface/pytorch-pretrained-BERT

import math
import copy
import torch
import torch.nn as nn
import numpy as np


# Gelu
def gelu(x):
    """Implementation of the gelu activation function.
        For information: OpenAI GPT's gelu is slightly different (and gives slightly different results):
        0.5 * x * (1 + torch.tanh(math.sqrt(2 / math.pi) * (x + 0.044715 * torch.pow(x, 3))))
        Also see https://arxiv.org/abs/1606.08415
    """
    return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0)))


# LayerNorm
try:
    from apex.normalization.fused_layer_norm import FusedLayerNorm as BertLayerNorm
except ImportError:
    # print("Better speed can be achieved with apex installed from https://www.github.com/nvidia/apex.")
    class BertLayerNorm(nn.Module):
        def __init__(self, hidden_size, eps=1e-12):
            """Construct a layernorm module in the TF style (epsilon inside the square root).
            """
            super(BertLayerNorm, self).__init__()
            self.weight = nn.Parameter(torch.ones(hidden_size))
            self.bias = nn.Parameter(torch.zeros(hidden_size))
            self.variance_epsilon = eps

        def forward(self, x):
            u = x.mean(-1, keepdim=True)
            s = (x - u).pow(2).mean(-1, keepdim=True)
            x = (x - u) / torch.sqrt(s + self.variance_epsilon)
            return self.weight * x + self.bias


class BertConfig(object):
    def __init__(self,
                 vocab_size,
                 hidden_size=768,
                 num_hidden_layers=12,
                 num_attention_heads=12,
                 intermediate_size=3072,
                 hidden_act="gelu",
                 hidden_dropout_prob=0.1,
                 max_position_embeddings=512,
                 attention_probs_dropout_prob=0.1,
                 type_vocab_size=2):
        self.vocab_size = vocab_size
        self.hidden_size = hidden_size
        self.num_hidden_layers = num_hidden_layers
        self.num_attention_heads = num_attention_heads
        self.hidden_act = hidden_act
        self.intermediate_size = intermediate_size
        self.hidden_dropout_prob = hidden_dropout_prob
        self.max_position_embeddings = max_position_embeddings
        self.attention_probs_dropout_prob = attention_probs_dropout_prob
        self.type_vocab_size = type_vocab_size


class BertSelfAttention(nn.Module):
    def __init__(self, config):
        super(BertSelfAttention, self).__init__()
        if config.hidden_size % config.num_attention_heads != 0:
            raise ValueError(
                "The hidden size (%d) is not a multiple of the number of attention "
                "heads (%d)" % (config.hidden_size, config.num_attention_heads))
        self.num_attention_heads = config.num_attention_heads
        self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
        self.all_head_size = self.num_attention_heads * self.attention_head_size

        self.query = nn.Linear(config.hidden_size, self.all_head_size)
        self.key = nn.Linear(config.hidden_size, self.all_head_size)
        self.value = nn.Linear(config.hidden_size, self.all_head_size)

        self.dropout = nn.Dropout(config.attention_probs_dropout_prob)

    def transpose_for_scores(self, x):
        new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
        x = x.view(*new_x_shape)
        return x.permute(0, 2, 1, 3)

    def forward(self, hidden_states, attention_mask):
        mixed_query_layer = self.query(hidden_states)
        mixed_key_layer = self.key(hidden_states)
        mixed_value_layer = self.value(hidden_states)

        query_layer = self.transpose_for_scores(mixed_query_layer)
        key_layer = self.transpose_for_scores(mixed_key_layer)
        value_layer = self.transpose_for_scores(mixed_value_layer)

        # Take the dot product between "query" and "key" to get the raw attention scores.
        attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
        attention_scores = attention_scores / math.sqrt(self.attention_head_size)
        # Apply the attention mask is (precomputed for all layers in BertModel forward() function)
        if attention_mask is not None:
            attention_scores = attention_scores + attention_mask

        # Normalize the attention scores to probabilities.
        attention_probs = nn.Softmax(dim=-1)(attention_scores)

        # This is actually dropping out entire tokens to attend to, which might
        # seem a bit unusual, but is taken from the original Transformer paper.
        attention_probs = self.dropout(attention_probs)

        context_layer = torch.matmul(attention_probs, value_layer)
        context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
        new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
        context_layer = context_layer.view(*new_context_layer_shape)
        return context_layer


class BertSelfOutput(nn.Module):
    def __init__(self, config):
        super(BertSelfOutput, self).__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        self.LayerNorm = BertLayerNorm(config.hidden_size, eps=1e-12)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, hidden_states, input_tensor):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class BertAttention(nn.Module):
    def __init__(self, config):
        super(BertAttention, self).__init__()
        self.self = BertSelfAttention(config)
        self.output = BertSelfOutput(config)

    def forward(self, input_tensor, attention_mask):
        self_output = self.self(input_tensor, attention_mask)
        attention_output = self.output(self_output, input_tensor)
        return attention_output


class BertIntermediate(nn.Module):
    def __init__(self, config):
        super(BertIntermediate, self).__init__()
        self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
        self.intermediate_act_fn = gelu

    def forward(self, hidden_states):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.intermediate_act_fn(hidden_states)
        return hidden_states


class BertOutput(nn.Module):
    def __init__(self, config):
        super(BertOutput, self).__init__()
        self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
        self.LayerNorm = BertLayerNorm(config.hidden_size, eps=1e-12)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, hidden_states, input_tensor):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class BertLayer(nn.Module):
    def __init__(self, config):
        super(BertLayer, self).__init__()
        self.attention = BertAttention(config)
        self.intermediate = BertIntermediate(config)
        self.output = BertOutput(config)

    def forward(self, hidden_states, attention_mask):
        attention_output = self.attention(hidden_states, attention_mask)
        intermediate_output = self.intermediate(attention_output)
        layer_output = self.output(intermediate_output, attention_output)
        return layer_output


class BertEncoder(nn.Module):
    def __init__(self, config):
        super(BertEncoder, self).__init__()
        layer = BertLayer(config)
        self.layer = nn.ModuleList([copy.deepcopy(layer) for _ in range(config.num_hidden_layers)])

    def forward(self, hidden_states, attention_mask=None, output_all_encoded_layers=True):
        all_encoder_layers = []
        for layer_module in self.layer:
            hidden_states = layer_module(hidden_states, attention_mask)
            if output_all_encoded_layers:
                all_encoder_layers.append(hidden_states)
        if not output_all_encoded_layers:
            all_encoder_layers.append(hidden_states)
        return all_encoder_layers


class BertEmbeddings(nn.Module):
    """Construct the embeddings from word, position and token_type embeddings.
    """

    def __init__(self, config):
        super(BertEmbeddings, self).__init__()
        self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)

        # self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
        # any TensorFlow checkpoint file
        self.LayerNorm = BertLayerNorm(config.hidden_size, eps=1e-12)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, input_ids, token_type_ids=None):
        seq_length = input_ids.size(1)
        position_ids = torch.arange(seq_length, dtype=torch.long, device=input_ids.device)
        position_ids = position_ids.unsqueeze(0).expand_as(input_ids[:, :, 0])

        position_embeddings = self.position_embeddings(position_ids)

        embeddings = input_ids + position_embeddings
        # embeddings = input_ids
        embeddings = self.LayerNorm(embeddings)
        embeddings = self.dropout(embeddings)
        return embeddings


class PositionalEncoding(nn.Module):
    def __init__(self, config):
        super(PositionalEncoding, self).__init__()
        emb_dim = config.hidden_size
        max_len = config.max_position_embeddings
        self.position_enc = self.position_encoding_init(max_len, emb_dim)

    @staticmethod
    def position_encoding_init(n_position, emb_dim):
        ''' Init the sinusoid position encoding table '''

        # keep dim 0 for padding token position encoding zero vector
        position_enc = np.array([
            [pos / np.power(10000, 2 * (j // 2) / emb_dim) for j in range(emb_dim)]
            if pos != 0 else np.zeros(emb_dim) for pos in range(n_position)])

        position_enc[1:, 0::2] = np.sin(position_enc[1:, 0::2])  # apply sin on 0th,2nd,4th...emb_dim
        position_enc[1:, 1::2] = np.cos(position_enc[1:, 1::2])  # apply cos on 1st,3rd,5th...emb_dim
        return torch.from_numpy(position_enc).type(torch.FloatTensor)

    def forward(self, word_seq):
        position_encoding = self.position_enc.unsqueeze(0).expand_as(word_seq)
        position_encoding = position_encoding.to(word_seq.device)
        word_pos_encoded = word_seq + position_encoding
        return word_pos_encoded


class BertPooler(nn.Module):
    def __init__(self, config):
        super(BertPooler, self).__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        self.activation = nn.Tanh()

    def forward(self, hidden_states):
        # We "pool" the model by simply taking the hidden state corresponding
        # to the first token.
        first_token_tensor = hidden_states[:, 0]
        pooled_output = self.dense(first_token_tensor)
        pooled_output = self.activation(pooled_output)
        return pooled_output