jgpeters commited on
Commit
253c877
·
verified ·
1 Parent(s): e323240

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +6 -13
README.md CHANGED
@@ -6,8 +6,6 @@ tags:
6
 
7
  # METL
8
 
9
- <!-- Provide a quick summary of what the model is/does. -->
10
-
11
  Mutational Effect Transfer Learning (METL) is a framework for pretraining and finetuning biophysics-informed protein language models.
12
 
13
 
@@ -17,15 +15,15 @@ This 🤗 repository contains a wrapper meant to facilitate the ease of use of M
17
 
18
  ### Model Description
19
 
20
- METL is discussed in the (paper)[https://www.biorxiv.org/content/10.1101/2024.03.15.585128v1] in further detail.
21
 
22
  ### Model Sources [optional]
23
 
24
  <!-- Provide the basic links for the model. -->
25
 
26
- - **Repository:** [https://github.com/gitter-lab/metl]
27
- - **Paper:** [https://www.biorxiv.org/content/10.1101/2024.03.15.585128v1]
28
- - **Demo:** [https://huggingface.co/spaces/gitter-lab/METL_demo]
29
 
30
  ## How to Get Started with the Model
31
 
@@ -67,13 +65,7 @@ with torch.no_grad():
67
 
68
  ```
69
 
70
- ## Training Details
71
-
72
- <!-- Do we want something here? -->
73
-
74
- ## Citation [optional]
75
-
76
- <!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
77
 
78
  Biophysics-based protein language models for protein engineering
79
  Sam Gelman, Bryce Johnson, Chase Freschlin, Sameer D’Costa, Anthony Gitter, Philip A. Romero
@@ -81,3 +73,4 @@ bioRxiv 2024.03.15.585128; doi: https://doi.org/10.1101/2024.03.15.585128
81
 
82
  ## Model Card Contact
83
 
 
 
6
 
7
  # METL
8
 
 
 
9
  Mutational Effect Transfer Learning (METL) is a framework for pretraining and finetuning biophysics-informed protein language models.
10
 
11
 
 
15
 
16
  ### Model Description
17
 
18
+ METL is discussed in the (paper)[https://www.biorxiv.org/content/10.1101/2024.03.15.585128v1] in further detail. The github contains more documentation and includes scripts for training and predicting with METL. A google colab notebook for finetuning and predicting on publically available METL models is made available as well [here](https://github.com/gitter-lab/metl/tree/main/notebooks).
19
 
20
  ### Model Sources [optional]
21
 
22
  <!-- Provide the basic links for the model. -->
23
 
24
+ - **Repository:** [METL Repo](https://github.com/gitter-lab/metl)
25
+ - **Paper:** [METL bio archrive](https://www.biorxiv.org/content/10.1101/2024.03.15.585128v1)
26
+ - **Demo:** [Huggingface demo space for METL](https://huggingface.co/spaces/gitter-lab/METL_demo)
27
 
28
  ## How to Get Started with the Model
29
 
 
65
 
66
  ```
67
 
68
+ ## Citation
 
 
 
 
 
 
69
 
70
  Biophysics-based protein language models for protein engineering
71
  Sam Gelman, Bryce Johnson, Chase Freschlin, Sameer D’Costa, Anthony Gitter, Philip A. Romero
 
73
 
74
  ## Model Card Contact
75
 
76
+ For questions and comments about METL, the best way to reach out is through opening a github issue in the [METL repository](https://github.com/gitter-lab/metl/issues) issues page.