jnirschl commited on
Commit
ae3bc17
1 Parent(s): 59a0162

Updating dataset

Browse files

We will post an updated version shortly.

perception/0.1.0/LICENSE DELETED
@@ -1 +0,0 @@
1
- CC-BY-SA-4.0
 
 
perception/0.1.0/dataset_info.json DELETED
@@ -1 +0,0 @@
1
- {"description": "uBench is a new benchmark to asses both cognition and perception capabilites of foundation models across multiple microscopy domains\n", "citation": "\n", "homepage": "", "license": "CC-BY-SA-4.0", "features": {"image_id": {"dtype": "string", "_type": "Value"}, "image": {"_type": "Image"}, "label": {"names": ["lymphocyte", "neutrophil", "basophil", "monocyte", "eosinophil", "platelet", "erythroblast", "immature granulocyte", "irregular_contours", "intermediate", "smooth_contours", "elongated_shape", "round_shape", "coarse_texture", "fine_texture", "very_weak", "moderate", "weak", "strong", "leishmania_haptomonad", "hela_metaphase", "tobacco_leaf_chloroplast", "cardiac_muscle", "zebrafish_retina", "metaphase", "g2", "anaphase", "g1", "s", "prophase", "telophase", "golgi_twin", "diffuse", "interphase", "partly_disassembled", "prometaphase", "late_anaphase", "early_anaphase", "apoptosis", "binucleate", "bipolar_spindle", "aster", "midbody", "low-grade-lsil", "negative-nilm", "high-grade-hsil", "carcinoma-scc", "alnus_normal", "corylus_avellana_normal", "corylus_avellana_abnormal", "non_pollen", "debris", "adipose", "stroma", "lympho", "tumor", "complex", "mucosa", "empty", "background", "smooth_muscle", "normal_mucosa", "cancer_stroma", "lymphocytes", "mucus", "chronic_heart_failure", "not_chronic_heart_failure", "taxol_mt_in-vitro", "gmpcpp_mt_in-vitro", "nuclei", "cell_membrane", "2-5um_int_calib_beads", "e_coli_gfp-fill", "e_coli_nuclei", "lysosomes", "tetraspeck_beads", "actin", "synthetic_noise", "unif_test_slide", "golgi", "nuclear_punctae", "membrane", "er", "centrosome", "nucleoplasm", "vesicles", "nucleolus_gc", "cytoplasmic", "cell_contact", "big_aggregates", "nuclear_membrane", "focal_adhesions", "nucleolus_fc_dfc", "chromatin", "cytoskeleton", "mitochondria", "unknown", "benign", "malignant", "cored", "negative", "caa", "normal_mitochondria", "abnormal_mitochondria"], "_type": "ClassLabel"}, "label_name": {"dtype": "string", "_type": "Value"}, "dataset": {"dtype": "string", "_type": "Value"}, "domain": {"dtype": "string", "_type": "Value"}, "institution": {"dtype": "string", "_type": "Value"}, "license": {"dtype": "string", "_type": "Value"}, "microns_per_pixel": {"dtype": "float32", "_type": "Value"}, "modality": {"dtype": "string", "_type": "Value"}, "ncbitaxon_id": {"dtype": "string", "_type": "Value"}, "ncbitaxon_name": {"dtype": "string", "_type": "Value"}, "pmid": {"dtype": "string", "_type": "Value"}, "split": {"dtype": "string", "_type": "Value"}, "stain": {"dtype": "string", "_type": "Value"}, "subdomain": {"dtype": "string", "_type": "Value"}, "submodality": {"dtype": "string", "_type": "Value"}, "synthetic": {"dtype": "bool", "_type": "Value"}, "captions": {"modality_0": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "modality_1": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "submodality_0": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "submodality_1": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "domain_0": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "domain_1": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "stain_0": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "stain_1": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "classification_0": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}, "classification_1": {"id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "question": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "tags": {"dtype": "string", "_type": "Value"}}}, "questions": {"classification": {"answer": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "int32", "_type": "Value"}, "id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "question": {"dtype": "string", "_type": "Value"}, "tags": {"dtype": "string", "_type": "Value"}}, "domain": {"answer": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "int32", "_type": "Value"}, "id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "question": {"dtype": "string", "_type": "Value"}, "tags": {"dtype": "string", "_type": "Value"}}, "modality": {"answer": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "int32", "_type": "Value"}, "id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "question": {"dtype": "string", "_type": "Value"}, "tags": {"dtype": "string", "_type": "Value"}}, "stain": {"answer": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "int32", "_type": "Value"}, "id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "question": {"dtype": "string", "_type": "Value"}, "tags": {"dtype": "string", "_type": "Value"}}, "subdomain": {"answer": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "int32", "_type": "Value"}, "id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "question": {"dtype": "string", "_type": "Value"}, "tags": {"dtype": "string", "_type": "Value"}}, "submodality": {"answer": {"dtype": "string", "_type": "Value"}, "answer_idx": {"dtype": "int32", "_type": "Value"}, "id": {"dtype": "string", "_type": "Value"}, "name": {"dtype": "string", "_type": "Value"}, "options": {"feature": {"dtype": "string", "_type": "Value"}, "_type": "Sequence"}, "question": {"dtype": "string", "_type": "Value"}, "tags": {"dtype": "string", "_type": "Value"}}}, "instances": {"feature": {"bbox": {"id": {"dtype": "string", "_type": "Value"}, "type": {"dtype": "string", "_type": "Value"}, "classId": {"dtype": "int32", "_type": "Value"}, "className": {"dtype": "string", "_type": "Value"}, "probability": {"dtype": "int32", "_type": "Value"}, "points": {"x1": {"dtype": "float32", "_type": "Value"}, "x2": {"dtype": "float32", "_type": "Value"}, "y1": {"dtype": "float32", "_type": "Value"}, "y2": {"dtype": "float32", "_type": "Value"}}, "groupId": {"dtype": "int32", "_type": "Value"}, "pointLabels": {"dtype": "string", "_type": "Value"}, "attributes": {"feature": {"name": {"dtype": "string", "_type": "Value"}, "groupName": {"dtype": "string", "_type": "Value"}}, "_type": "Sequence"}, "error": {"dtype": "string", "_type": "Value"}, "locked": {"dtype": "bool", "_type": "Value"}}}, "_type": "Sequence"}}, "supervised_keys": {"input": "image", "output": "label_name"}, "builder_name": "ubench", "dataset_name": "ubench", "config_name": "perception_all", "version": {"version_str": "0.1.0", "description": "df76cd64a14d6be40128eaae97dded41ce435b7e098991f2fb691e38263fe5fc", "major": 0, "minor": 1, "patch": 0}, "splits": {"test": {"name": "test", "num_bytes": 1066292986, "num_examples": 17315, "shard_lengths": [10400, 5950, 965], "dataset_name": "ubench"}}, "download_checksums": {}, "download_size": 0, "dataset_size": 1066292986, "size_in_bytes": 1066292986}
 
 
perception/0.1.0/ubench-test-00000-of-00003.arrow DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:075abf17d2b3afa63dcfb51260d9d75feaffeef660ebb4b3a7890113ffab3c65
3
- size 503322760
 
 
 
 
perception/0.1.0/ubench-test-00001-of-00003.arrow DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:5fc9108f277cf3b117d76bf41f37b0de7c3e1f09aaaacec74084f3fb610a66ac
3
- size 501860448
 
 
 
 
perception/0.1.0/ubench-test-00002-of-00003.arrow DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:05a87da12d8a6aa1ef0cdf58b7536f175a5c9405a209cfbdba4967fd782b512e
3
- size 65193384