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@@ -24,6 +24,22 @@ dataset_info:
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  download_size: 415916
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  dataset_size: 5535297
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  ---
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- # Dataset Card for "her2-binding-prediction"
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- This is a dataset of HER2 binding antibodies from [Mason et al. (2021)](https://www.nature.com/articles/s41551-021-00699-9)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  download_size: 415916
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  dataset_size: 5535297
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  ---
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+ # HER2 binding dataset
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+ HER2 binding antibodies have been obtained from the [Github repo](https://github.com/dahjan/DMS_opt) for [Mason et al. (2021)](https://www.nature.com/articles/s41551-021-00699-9).
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+ Labels for antibody sequences were generated using scripts in the above Github repo. The number of negatives and positives were balanced through random undersampling using [imbalanced-learn](https://github.com/scikit-learn-contrib/imbalanced-learn), and sequences were deduplicated.
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+ The dataset has:
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+ * 39108 antibodies in total
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+ * 22779 antibodies after undersampling and deduplication
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+ * 18223 in the training set, 2278 in the evaluation set, and 2278 in the test set.
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+ Example
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+ | vh_full | vl_full | label |
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+ | ------- | ------- | ----- |
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+ | EVQ... | DIQ... | 1 |
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+ | EVQ... | DIQ... | 0 |
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+ | EVQ... | DIQ... | 0 |
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+ | EVQ... | DIQ... | 1 |