ideasbyjin
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Some more description
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README.md
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download_size: 415916
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dataset_size: 5535297
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# HER2 binding dataset
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HER2 binding antibodies have been obtained from the [Github repo](https://github.com/dahjan/DMS_opt) for [Mason et al. (2021)](https://www.nature.com/articles/s41551-021-00699-9).
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Labels for antibody sequences were generated using scripts in the above Github repo. The number of negatives and positives were balanced through random undersampling using [imbalanced-learn](https://github.com/scikit-learn-contrib/imbalanced-learn), and sequences were deduplicated.
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The dataset has:
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* 39108 antibodies in total
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* 22779 antibodies after undersampling and deduplication
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* 18223 in the training set, 2278 in the evaluation set, and 2278 in the test set.
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Example
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| vh_full | vl_full | label |
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| ------- | ------- | ----- |
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| EVQ... | DIQ... | 1 |
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| EVQ... | DIQ... | 0 |
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| EVQ... | DIQ... | 0 |
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| EVQ... | DIQ... | 1 |
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