Sample_Id Site1_Hugo_Symbol Site1_Chromosome Site1_Position Site2_Hugo_Symbol Site2_Chromosome Site2_Position Site2_Effect_On_Frame Tumor_Split_Read_Count Tumor_Paired_End_Read_Count SV_Status NCBI_Build Event_Info TCGA-4P-AA8J-01 SUFU 10 102550106 ADK 10 74708321 in-frame 19 38 SOMATIC GRCh37 SUFU-ADK TCGA-4P-AA8J-01 SMPD4P1 22 20626096 MED15 22 20582611 9 54 SOMATIC GRCh37 SMPD4P1-MED15 TCGA-4P-AA8J-01 MMS19 10 97498273 MICU1 10 72566794 2 8 SOMATIC GRCh37 MMS19-MICU1 TCGA-BA-4076-01 PHACTR2 6 143678209 PLAGL1 6 143968978 3 30 SOMATIC GRCh37 PHACTR2-PLAGL1 TCGA-BA-4078-01 SLC2A12 6 134052378 SGK1 6 134262148 frameshift 20 61 SOMATIC GRCh37 SLC2A12-SGK1 TCGA-BA-4078-01 PTK7 6 43076567 ANKS1A 6 34967239 frameshift 5 38 SOMATIC GRCh37 PTK7-ANKS1A TCGA-BA-4078-01 ATF6B 6 32116480 CMAHP 6 25115100 3 33 SOMATIC GRCh37 ATF6B-CMAHP TCGA-BA-4078-01 ANKS1A 6 34889599 DCDC2 6 24353623 in-frame 5 2 SOMATIC GRCh37 ANKS1A-DCDC2 TCGA-BA-4078-01 POFUT1 20 32208065 FDFT1 8 11831518 frameshift 1 1 SOMATIC GRCh37 POFUT1-FDFT1 TCGA-BA-4078-01 PRKDC 8 47927194 SPIDR 8 47595811 frameshift 1 1 SOMATIC GRCh37 PRKDC-SPIDR TCGA-BA-5151-01 STIM2 4 26861369 TBC1D19 4 26720081 in-frame 1 3 SOMATIC GRCh37 STIM2-TBC1D19 TCGA-BA-5152-01 RBMS2 12 56586926 NACA 12 56713190 in-frame 2 1 SOMATIC GRCh37 RBMS2-NACA TCGA-BA-5153-01 TRIO 5 14280436 PPP2R5E 14 63382157 in-frame 12 78 SOMATIC GRCh37 TRIO-PPP2R5E TCGA-BA-5153-01 ARIH2 3 48918998 TRIO 5 14286871 1 9 SOMATIC GRCh37 ARIH2-TRIO TCGA-BA-5557-01 TFRC 3 196082043 JUP 17 41771862 1 1 SOMATIC GRCh37 TFRC-JUP TCGA-BA-5558-01 GRAMD2 15 72197731 PKM 15 72202620 frameshift 10 29 SOMATIC GRCh37 GRAMD2-PKM TCGA-BA-5559-01 SAMD12 8 118580715 SAMHD1 20 36916830 in-frame 21 76 SOMATIC GRCh37 SAMD12-SAMHD1 TCGA-BA-5559-01 SAMHD1 20 36919364 YIF1B 19 38305507 in-frame 12 57 SOMATIC GRCh37 SAMHD1-YIF1B TCGA-BA-5559-01 YIF1B 19 38309405 SAMD12 8 118439961 in-frame 2 6 SOMATIC GRCh37 YIF1B-SAMD12 TCGA-BA-6868-01 LAMB1 7 107986022 PUS7 7 105457926 in-frame 86 384 SOMATIC GRCh37 LAMB1-PUS7 TCGA-BA-6868-01 MAMDC2 9 70131612 MRPS28 8 79919148 frameshift 58 165 SOMATIC GRCh37 MAMDC2-MRPS28 TCGA-BA-6868-01 ELAVL1 19 7991644 LYPLA2P2 19 7879940 12 28 SOMATIC GRCh37 ELAVL1-LYPLA2P2 TCGA-BA-6868-01 SGMS1 10 50466890 GRID1 10 85916239 3 23 SOMATIC GRCh37 SGMS1-GRID1 TCGA-BA-6868-01 MRPS28 8 80002999 MAMDC2 9 70108211 in-frame 3 4 SOMATIC GRCh37 MRPS28-MAMDC2 TCGA-BA-6868-01 ELAVL1 19 7973807 PRR36 19 7873617 in-frame 1000 1000 SOMATIC GRCh37 ELAVL1-PRR36 TCGA-BA-6869-01 PEMT 17 17576920 RAI1 17 17724028 4 31 SOMATIC GRCh37 PEMT-RAI1 TCGA-BA-6869-01 RAI1 17 17724159 PEMT 17 17577027 5 26 SOMATIC GRCh37 RAI1-PEMT TCGA-BA-6869-01 PDLIM1 10 95263864 TNRC6A 16 24789232 frameshift 1 7 SOMATIC GRCh37 PDLIM1-TNRC6A TCGA-BA-6869-01 PGD 1 10399704 CLSTN1 1 9730705 in-frame 1 1 SOMATIC GRCh37 PGD-CLSTN1 TCGA-BA-6871-01 NUAK2 1 205311705 LEMD1 1 205420574 39 157 SOMATIC GRCh37 NUAK2-LEMD1 TCGA-BA-6871-01 BAIAP2 17 81086580 TBCD 17 82889668 in-frame 38 148 SOMATIC GRCh37 BAIAP2-TBCD TCGA-BA-6871-01 SCNN1A 12 6348727 DCP1B 12 1946286 in-frame 8 78 SOMATIC GRCh37 SCNN1A-DCP1B TCGA-BA-6871-01 NR4A1 12 52041929 IL20RB 3 136980466 in-frame 9 17 SOMATIC GRCh37 NR4A1-IL20RB TCGA-BA-6871-01 ZNF76 6 35259727 ANKS1A 6 35017473 1 9 SOMATIC GRCh37 ZNF76-ANKS1A TCGA-BA-6872-01 SELENOW 19 47778814 EHD2 19 47740881 frameshift 21 92 SOMATIC GRCh37 SELENOW-EHD2 TCGA-BA-6872-01 LYPD1 2 132668400 NCKAP5 2 132732051 in-frame 3 11 SOMATIC GRCh37 LYPD1-NCKAP5 TCGA-BA-6872-01 EGFR 7 55019365 DYM 18 49391645 frameshift 1 14 SOMATIC GRCh37 EGFR-DYM TCGA-BA-6872-01 HIPK3 11 33257889 WT1-AS 11 32452021 1 5 SOMATIC GRCh37 HIPK3-WT1-AS TCGA-BA-6873-01 ALDH1A3 15 100887712 IGF1R 15 98891325 frameshift 1 3 SOMATIC GRCh37 ALDH1A3-IGF1R TCGA-BA-6873-01 LTBP3 11 65553701 CERS3 15 100402865 in-frame 1 3 SOMATIC GRCh37 LTBP3-CERS3 TCGA-BA-7269-01 FOXN2 2 48314814 PLB1 2 28640927 30 79 SOMATIC GRCh37 FOXN2-PLB1 TCGA-BA-7269-01 MARK2 11 63839560 BPIFA2 20 33178147 frameshift 12 36 SOMATIC GRCh37 MARK2-BPIFA2 TCGA-BA-7269-01 TAOK1 17 29467216 PARD6G 18 80183150 frameshift 6 12 SOMATIC GRCh37 TAOK1-PARD6G TCGA-BA-A4IG-01 MAP2K2 19 4110509 PSMD9 12 121915856 in-frame 40 296 SOMATIC GRCh37 MAP2K2-PSMD9 TCGA-BA-A4IG-01 TNS4 17 40487036 CCR7 17 40555818 frameshift 1 7 SOMATIC GRCh37 TNS4-CCR7 TCGA-BA-A4IG-01 CMTM4 16 66696340 SULT1E1 4 69857653 2 2 SOMATIC GRCh37 CMTM4-SULT1E1 TCGA-BA-A4II-01 GSE1 16 85613398 EMC8 16 85789050 frameshift 23 113 SOMATIC GRCh37 GSE1-EMC8 TCGA-BA-A4II-01 MARK2 11 63900678 C11orf84 11 63826928 frameshift 6 90 SOMATIC GRCh37 MARK2-C11orf84 TCGA-BA-A4II-01 AKAP9 7 91941147 ANKIB1 7 92294889 3 10 SOMATIC GRCh37 AKAP9-ANKIB1 TCGA-BA-A4II-01 WRAP53 17 7686078 MPDU1 17 7591851 3 6 SOMATIC GRCh37 WRAP53-MPDU1 TCGA-BA-A4II-01 KLHDC4 16 87765792 CA5A 16 87902520 in-frame 2 9 SOMATIC GRCh37 KLHDC4-CA5A TCGA-BA-A4II-01 TOP2A 17 40416740 TLK2 17 62560016 in-frame 1 2 SOMATIC GRCh37 TOP2A-TLK2 TCGA-BA-A6D8-01 DEDD 1 161130815 UFC1 1 161153926 13 39 SOMATIC GRCh37 DEDD-UFC1 TCGA-BA-A6D8-01 PCNX1 14 71103669 TTLL5 14 75954424 frameshift 6 17 SOMATIC GRCh37 PCNX1-TTLL5 TCGA-BA-A6DB-01 DLG1 3 197282679 TMEM44 3 194623695 in-frame 1 3 SOMATIC GRCh37 DLG1-TMEM44 TCGA-BA-A6DE-01 C18orf8 18 23509279 PSPC1 13 19772543 in-frame 16 121 SOMATIC GRCh37 C18orf8-PSPC1 TCGA-BA-A6DE-01 MAP2 2 209424276 ICA1L 2 202816009 9 45 SOMATIC GRCh37 MAP2-ICA1L TCGA-BA-A6DJ-01 UBE4B 1 10033694 PEX14 1 10536213 in-frame 12 43 SOMATIC GRCh37 UBE4B-PEX14 TCGA-BA-A6DJ-01 VMP1 17 59817773 TUBD1 17 59878334 frameshift 5 21 SOMATIC GRCh37 VMP1-TUBD1 TCGA-BA-A6DL-01 PARL 3 183884722 ABCC5 3 184014447 6 13 SOMATIC GRCh37 PARL-ABCC5 TCGA-BA-A6DL-01 CLTA 9 36204179 GNE 9 36249397 frameshift 1 6 SOMATIC GRCh37 CLTA-GNE TCGA-BA-A8YP-01 PRPSAP2 17 18867334 PLLP 16 57258584 frameshift 16 33 SOMATIC GRCh37 PRPSAP2-PLLP TCGA-BA-A8YP-01 NRIP1 21 15064745 GDPD1 17 59245414 11 29 SOMATIC GRCh37 NRIP1-GDPD1 TCGA-BA-A8YP-01 ZFR 5 32379115 PLEKHG4B 5 181514 frameshift 6 17 SOMATIC GRCh37 ZFR-PLEKHG4B TCGA-BA-A8YP-01 KBTBD2 7 32891536 PDE1C 7 32169956 5 8 SOMATIC GRCh37 KBTBD2-PDE1C TCGA-BA-A8YP-01 KDM6A X 44974715 DLL1 6 170286298 frameshift 4 10 SOMATIC GRCh37 KDM6A-DLL1 TCGA-BA-A8YP-01 DANCR 4 52712959 GTF3C3 2 196770039 5 5 SOMATIC GRCh37 DANCR-GTF3C3 TCGA-BA-A8YP-01 RSF1 11 77820528 TENM4 11 78738570 frameshift 3 5 SOMATIC GRCh37 RSF1-TENM4 TCGA-BB-4217-01 TUBD1 17 59886083 INPP5D 2 233182410 frameshift 5 14 SOMATIC GRCh37 TUBD1-INPP5D TCGA-BB-4223-01 PAN3 13 28139087 NTRK2 9 84934162 in-frame 7 5 SOMATIC GRCh37 PAN3-NTRK2 TCGA-BB-4223-01 FAM69A 1 92961376 LRRC8D 1 89843638 4 11 SOMATIC GRCh37 FAM69A-LRRC8D TCGA-BB-4223-01 OBSCN 1 228224734 CASZ1 1 10665571 in-frame 3 15 SOMATIC GRCh37 OBSCN-CASZ1 TCGA-BB-4223-01 ATP11B 3 182869331 NAALADL2 3 175655481 3 10 SOMATIC GRCh37 ATP11B-NAALADL2 TCGA-BB-4224-01 PACS2 14 105353733 DIO3OS 14 101552757 16 59 SOMATIC GRCh37 PACS2-DIO3OS TCGA-BB-4224-01 NOTCH1 9 136544024 SDCCAG3 9 136407938 frameshift 10 37 SOMATIC GRCh37 NOTCH1-SDCCAG3 TCGA-BB-4224-01 ATF7 12 53626280 ATP5G2 12 53676660 9 33 SOMATIC GRCh37 ATF7-ATP5G2 TCGA-BB-4225-01 KCNQ1 11 2445484 METTL15 11 28526475 10 52 SOMATIC GRCh37 KCNQ1-METTL15 TCGA-BB-4227-01 MSI2 17 57401471 UTP18 17 51296965 in-frame 11 65 SOMATIC GRCh37 MSI2-UTP18 TCGA-BB-4227-01 GLS 2 190924593 MYO1B 2 191276887 12 60 SOMATIC GRCh37 GLS-MYO1B TCGA-BB-4227-01 RAP2B 3 153163057 ANAPC16 10 72230366 in-frame 7 27 SOMATIC GRCh37 RAP2B-ANAPC16 TCGA-BB-4227-01 RAP2B 3 153163577 ASCC1 10 72216072 6 16 SOMATIC GRCh37 RAP2B-ASCC1 TCGA-BB-4227-01 TTLL11 9 122039272 NDUFA8 9 122148277 frameshift 2 16 SOMATIC GRCh37 TTLL11-NDUFA8 TCGA-BB-7861-01 PUM1 1 30992390 KIAA1211 4 56323377 frameshift 7 14 SOMATIC GRCh37 PUM1-KIAA1211 TCGA-BB-7861-01 TMLHE X 155513986 NEDD9 6 11193692 frameshift 2 8 SOMATIC GRCh37 TMLHE-NEDD9 TCGA-BB-7861-01 HERC4 10 67990211 CTNNA3 10 65920617 frameshift 1 9 SOMATIC GRCh37 HERC4-CTNNA3 TCGA-BB-7866-01 EIF2S2 20 34098498 NCOA6 20 34743341 in-frame 11 29 SOMATIC GRCh37 EIF2S2-NCOA6 TCGA-BB-7866-01 TAF4 20 61997550 STX16 20 58667490 in-frame 2 42 SOMATIC GRCh37 TAF4-STX16 TCGA-BB-7866-01 XRN1 3 142347234 GK5 3 142215692 frameshift 1 4 SOMATIC GRCh37 XRN1-GK5 TCGA-BB-7871-01 POLH 6 43615525 EZR 6 158766444 5 16 SOMATIC GRCh37 POLH-EZR TCGA-BB-7871-01 ADK 10 74224591 TAF1D 11 93732291 2 4 SOMATIC GRCh37 ADK-TAF1D TCGA-BB-7872-01 RBBP8 18 22936960 TAF4B 18 26265170 in-frame 7 32 SOMATIC GRCh37 RBBP8-TAF4B TCGA-BB-7872-01 TP53TG1 7 87341523 ABCB1 7 87553932 6 21 SOMATIC GRCh37 TP53TG1-ABCB1 TCGA-BB-8596-01 SF1 11 64766900 HRASLS2 11 63558660 in-frame 25 164 SOMATIC GRCh37 SF1-HRASLS2 TCGA-BB-A5HY-01 DTX2 7 76463709 ZP3 7 76425052 29 342 SOMATIC GRCh37 DTX2-ZP3 TCGA-BB-A5HY-01 SIN3A 15 75451423 SNUPN 15 75621056 15 36 SOMATIC GRCh37 SIN3A-SNUPN TCGA-BB-A5HY-01 BDP1 5 71483896 PMCHL2 5 71377506 9 47 SOMATIC GRCh37 BDP1-PMCHL2 TCGA-BB-A5HY-01 SLC25A17 22 40799023 DMC1 22 38569390 1 7 SOMATIC GRCh37 SLC25A17-DMC1 TCGA-BB-A5HY-01 NIN 14 50770388 SAV1 14 50665619 in-frame 1 3 SOMATIC GRCh37 NIN-SAV1 TCGA-C9-A47Z-01 AK3 9 4740937 IL33 9 6241684 8 197 SOMATIC GRCh37 AK3-IL33 TCGA-C9-A47Z-01 NDRG3 20 36746045 CPLX1 4 792608 5 9 SOMATIC GRCh37 NDRG3-CPLX1 TCGA-CN-4723-01 DNM1 9 128203631 LCN2 9 128151638 in-frame 35 120 SOMATIC GRCh37 DNM1-LCN2 TCGA-CN-4723-01 KIAA0319L 1 35554350 DLGAP3 1 34869089 frameshift 6 79 SOMATIC GRCh37 KIAA0319L-DLGAP3 TCGA-CN-4723-01 CACNA2D1 7 82335135 NAALADL2 3 175737306 in-frame 11 15 SOMATIC GRCh37 CACNA2D1-NAALADL2 TCGA-CN-4725-01 SLAIN2 4 48383784 CWH43 4 49003735 in-frame 20 173 SOMATIC GRCh37 SLAIN2-CWH43 TCGA-CN-4725-01 ZNF236 18 76881512 ZNF627 19 11614527 frameshift 2 4 SOMATIC GRCh37 ZNF236-ZNF627 TCGA-CN-4726-01 DSG1 18 31331867 DSP 6 7567781 in-frame 1 7 SOMATIC GRCh37 DSG1-DSP TCGA-CN-4726-01 CHMP5 9 33276564 SPINK4 9 33245112 in-frame 1 2 SOMATIC GRCh37 CHMP5-SPINK4 TCGA-CN-4726-01 PPP1R9B 17 50149143 COL1A1 17 50192850 in-frame 1 2 SOMATIC GRCh37 PPP1R9B-COL1A1 TCGA-CN-4728-01 NLGN4Y Y 14622591 VAMP7 Y 57126221 in-frame 2 3 SOMATIC GRCh37 NLGN4Y-VAMP7 TCGA-CN-4728-01 TSC22D1 13 44573163 LETM1 4 1825683 frameshift 1 5 SOMATIC GRCh37 TSC22D1-LETM1 TCGA-CN-4730-01 STARD3 17 39658522 OAZ1 19 2271782 in-frame 1 2 SOMATIC GRCh37 STARD3-OAZ1 TCGA-CN-4731-01 SCAF1 19 49653705 FLT3LG 19 49478909 frameshift 14 56 SOMATIC GRCh37 SCAF1-FLT3LG TCGA-CN-4731-01 PPP3CC 8 22475624 PIWIL2 8 22281120 in-frame 5 31 SOMATIC GRCh37 PPP3CC-PIWIL2 TCGA-CN-4731-01 WDR82 3 52287833 NT5DC2 3 52529334 5 29 SOMATIC GRCh37 WDR82-NT5DC2 TCGA-CN-4731-01 SLC3A2 11 62856381 GNG3 11 62707700 4 6 SOMATIC GRCh37 SLC3A2-GNG3 TCGA-CN-4733-01 RCL1 9 4793227 PLGRKT 9 5361888 frameshift 11 18 SOMATIC GRCh37 RCL1-PLGRKT TCGA-CN-4733-01 EPB41L1 20 36092813 TGM3 20 2309657 7 20 SOMATIC GRCh37 EPB41L1-TGM3 TCGA-CN-4735-01 CDC42BPB 14 103003928 PPP4R3A 14 91461607 frameshift 8 36 SOMATIC GRCh37 CDC42BPB-PPP4R3A TCGA-CN-4735-01 TTC7B 14 90730075 PPP2R5C 14 101856686 frameshift 1 17 SOMATIC GRCh37 TTC7B-PPP2R5C TCGA-CN-4735-01 PSD3 8 18867674 ANO1 11 70087752 frameshift 2 6 SOMATIC GRCh37 PSD3-ANO1 TCGA-CN-4736-01 MAP3K5 6 136791710 ARFIP1 4 152872452 in-frame 3 17 SOMATIC GRCh37 MAP3K5-ARFIP1 TCGA-CN-4736-01 PRRG4 11 32830632 QSER1 11 32953857 in-frame 1 3 SOMATIC GRCh37 PRRG4-QSER1 TCGA-CN-4737-01 TBC1D12 10 94442019 HELLS 10 94588229 in-frame 4 15 SOMATIC GRCh37 TBC1D12-HELLS TCGA-CN-4738-01 TLE3 15 70094532 THAP10 15 70882908 in-frame 20 55 SOMATIC GRCh37 TLE3-THAP10 TCGA-CN-4739-01 TBC1D2 9 98228952 GABBR2 9 98496514 in-frame 2 18 SOMATIC GRCh37 TBC1D2-GABBR2 TCGA-CN-4739-01 USP25 21 15811210 PCNT 21 46421970 in-frame 1 3 SOMATIC GRCh37 USP25-PCNT TCGA-CN-4741-01 PIP5K1C 19 3700297 MATK 19 3781672 in-frame 7 27 SOMATIC GRCh37 PIP5K1C-MATK TCGA-CN-4742-01 NCKAP1 2 183023806 PARD3 10 34696419 in-frame 29 116 SOMATIC GRCh37 NCKAP1-PARD3 TCGA-CN-4742-01 ELMSAN1 14 73727458 ANO1 11 70111707 frameshift 2 11 SOMATIC GRCh37 ELMSAN1-ANO1 TCGA-CN-4742-01 KLF7 2 207165467 ALS2 2 201768945 1 3 SOMATIC GRCh37 KLF7-ALS2 TCGA-CN-5355-01 HMGXB3 5 150001179 CAPN1 11 65204683 in-frame 8 60 SOMATIC GRCh37 HMGXB3-CAPN1 TCGA-CN-5355-01 SMG1P3 16 21519828 ME1 6 83352139 2 16 SOMATIC GRCh37 SMG1P3-ME1 TCGA-CN-5355-01 BOP1 8 144276224 PLEC 8 143938692 frameshift 1 2 SOMATIC GRCh37 BOP1-PLEC TCGA-CN-5359-01 NEDD4L 18 58165861 CDH19 18 66572316 2 28 SOMATIC GRCh37 NEDD4L-CDH19 TCGA-CN-5359-01 TSFM 12 57793073 OS9 12 57695962 in-frame 5 4 SOMATIC GRCh37 TSFM-OS9 TCGA-CN-5359-01 LAMB1 7 107986022 ATXN7L1 7 105761463 in-frame 2 12 SOMATIC GRCh37 LAMB1-ATXN7L1 TCGA-CN-5361-01 SRPK1 6 35920468 SOX2-OT 3 181563720 1 19 SOMATIC GRCh37 SRPK1-SOX2-OT TCGA-CN-5361-01 RNPEP 1 202004496 MICALL1 22 37932798 frameshift 1 1 SOMATIC GRCh37 RNPEP-MICALL1 TCGA-CN-5363-01 NSF 17 46704854 STRADA 17 63690597 3 14 SOMATIC GRCh37 NSF-STRADA TCGA-CN-5363-01 CD44 11 35139370 TRIM44 11 35725924 in-frame 1 14 SOMATIC GRCh37 CD44-TRIM44 TCGA-CN-5364-01 PTPN1 20 50510590 P2RX4 12 121217134 frameshift 11 49 SOMATIC GRCh37 PTPN1-P2RX4 TCGA-CN-5364-01 INTS12 4 105691976 CXXC4 4 104472366 in-frame 1 13 SOMATIC GRCh37 INTS12-CXXC4 TCGA-CN-5366-01 ESPN 1 6460110 FBLIM1 1 15784548 in-frame 1 41 SOMATIC GRCh37 ESPN-FBLIM1 TCGA-CN-5367-01 CPT1A 11 68799218 KMT5B 11 68167178 frameshift 31 88 SOMATIC GRCh37 CPT1A-KMT5B TCGA-CN-5367-01 FCHSD2 11 73140031 GUCY1A2 11 106986131 frameshift 11 85 SOMATIC GRCh37 FCHSD2-GUCY1A2 TCGA-CN-5367-01 MAX 14 65093708 RUNX2 6 45437947 frameshift 7 40 SOMATIC GRCh37 MAX-RUNX2 TCGA-CN-5367-01 CEP126 11 101922760 YAP1 11 102162456 in-frame 8 12 SOMATIC GRCh37 CEP126-YAP1 TCGA-CN-5367-01 RUNX2 6 45432019 MAX 14 65078036 frameshift 3 6 SOMATIC GRCh37 RUNX2-MAX TCGA-CN-5367-01 ARHGAP42 11 100795166 FAM168A 11 73468492 1 4 SOMATIC GRCh37 ARHGAP42-FAM168A TCGA-CN-5369-01 TNFSF14 19 6667113 GRAMD1A 19 35019191 in-frame 1 7 SOMATIC GRCh37 TNFSF14-GRAMD1A TCGA-CN-5370-01 THBS1 15 39584422 NRG1 8 32727949 frameshift 20 71 SOMATIC GRCh37 THBS1-NRG1 TCGA-CN-5370-01 FOXP1 3 71493426 PXDNL 8 51499770 2 10 SOMATIC GRCh37 FOXP1-PXDNL TCGA-CN-5370-01 FOXN1 17 28506443 PRKDC 8 47785317 3 5 SOMATIC GRCh37 FOXN1-PRKDC TCGA-CN-6010-01 MAPK10 4 86453030 CCSER1 4 90308244 2 19 SOMATIC GRCh37 MAPK10-CCSER1 TCGA-CN-6012-01 TIMELESS 12 56437466 GLS2 12 56471895 10 73 SOMATIC GRCh37 TIMELESS-GLS2 TCGA-CN-6013-01 POLR2B 4 56990898 REST 4 56966656 frameshift 23 43 SOMATIC GRCh37 POLR2B-REST TCGA-CN-6013-01 NFYC 1 40691867 CTPS1 1 41001029 3 33 SOMATIC GRCh37 NFYC-CTPS1 TCGA-CN-6017-01 TNNT3 11 1934885 COL1A1 17 50197994 in-frame 1000 1000 SOMATIC GRCh37 TNNT3-COL1A1 TCGA-CN-6018-01 SMURF1 7 99143726 AZGP1 7 99972006 in-frame 6 31 SOMATIC GRCh37 SMURF1-AZGP1 TCGA-CN-6018-01 SMURF1 7 99143726 GJC3 7 99923603 in-frame 1 13 SOMATIC GRCh37 SMURF1-GJC3 TCGA-CN-6020-01 MIRLET7BHG 22 46103249 SCUBE1 22 43339235 7 39 SOMATIC GRCh37 MIRLET7BHG-SCUBE1 TCGA-CN-6020-01 NSD3 8 38304587 ASH2L 8 38143739 1 10 SOMATIC GRCh37 NSD3-ASH2L TCGA-CN-6022-01 IQCH 15 67261394 MAP2K5 15 67693518 in-frame 1 3 SOMATIC GRCh37 IQCH-MAP2K5 TCGA-CN-6023-01 NDUFAF6 8 94975415 DPY19L4 8 94726331 2 5 SOMATIC GRCh37 NDUFAF6-DPY19L4 TCGA-CN-6024-01 SPEN 1 15848150 C1orf64 1 16005919 frameshift 30 77 SOMATIC GRCh37 SPEN-C1orf64 TCGA-CN-6024-01 CBFA2T2 20 33490301 HM13 20 31544947 frameshift 9 28 SOMATIC GRCh37 CBFA2T2-HM13 TCGA-CN-6024-01 GAPDH 12 6537010 TNC 9 115021267 in-frame 1 9 SOMATIC GRCh37 GAPDH-TNC TCGA-CN-6989-01 TMSB10 2 84905718 COL6A2 21 46111450 1 3 SOMATIC GRCh37 TMSB10-COL6A2 TCGA-CN-6992-01 IVNS1ABP 1 185299710 BAHCC1 17 81426800 in-frame 12 31 SOMATIC GRCh37 IVNS1ABP-BAHCC1 TCGA-CN-6992-01 TPX2 20 31742647 UNC5D 8 35549292 3 7 SOMATIC GRCh37 TPX2-UNC5D TCGA-CN-6992-01 DESI2 1 244653355 C1orf101 1 244635489 in-frame 1 12 SOMATIC GRCh37 DESI2-C1orf101 TCGA-CN-6992-01 MED13 17 61962752 INTS2 17 61912070 frameshift 1000 1000 SOMATIC GRCh37 MED13-INTS2 TCGA-CN-6994-01 PHF21A 11 45945840 GLIS2 16 4336725 frameshift 4 29 SOMATIC GRCh37 PHF21A-GLIS2 TCGA-CN-6994-01 TYMP 22 50529904 ATP8B4 15 49987549 1 10 SOMATIC GRCh37 TYMP-ATP8B4 TCGA-CN-6994-01 FKBP3 14 45129794 FANCM 14 45148837 in-frame 1 3 SOMATIC GRCh37 FKBP3-FANCM TCGA-CN-6995-01 ANO1 11 70132079 FOLR3 11 72135947 2 25 SOMATIC GRCh37 ANO1-FOLR3 TCGA-CN-6997-01 LYN 8 55953984 NTRK3 15 88033045 in-frame 24 146 SOMATIC GRCh37 LYN-NTRK3 TCGA-CN-A498-01 NOTCH1 9 136511152 MAPK1 22 21788808 frameshift 3 12 SOMATIC GRCh37 NOTCH1-MAPK1 TCGA-CN-A498-01 MAPK1 22 21799012 NOTCH1 9 136519565 frameshift 1 7 SOMATIC GRCh37 MAPK1-NOTCH1 TCGA-CN-A499-01 VCL 10 74043153 SFXN2 10 102726612 in-frame 2 7 SOMATIC GRCh37 VCL-SFXN2 TCGA-CN-A49A-01 STK39 2 168012634 NCKAP5 2 132732051 in-frame 8 35 SOMATIC GRCh37 STK39-NCKAP5 TCGA-CN-A49A-01 GPHN 14 67023675 ATP6V1D 14 67353040 frameshift 1 7 SOMATIC GRCh37 GPHN-ATP6V1D TCGA-CN-A49C-01 MACROD1 11 64151239 TCN1 11 59854835 in-frame 112 486 SOMATIC GRCh37 MACROD1-TCN1 TCGA-CN-A49C-01 CPT1A 11 68781771 P4HA3 11 74289130 frameshift 3 8 SOMATIC GRCh37 CPT1A-P4HA3 TCGA-CN-A49C-01 ERBB2 17 39717480 IKZF3 17 39792933 frameshift 1 9 SOMATIC GRCh37 ERBB2-IKZF3 TCGA-CN-A63T-01 SIL1 5 139121035 DNAJC18 5 139414272 in-frame 7 13 SOMATIC GRCh37 SIL1-DNAJC18 TCGA-CN-A63T-01 CSTF3 11 33090532 CCDC73 11 32760258 2 2 SOMATIC GRCh37 CSTF3-CCDC73 TCGA-CN-A63U-01 OCIAD1 4 48831249 GLIPR2 9 36162362 15 131 SOMATIC GRCh37 OCIAD1-GLIPR2 TCGA-CN-A63U-01 SLC25A17 22 40792525 RBX1 22 40967799 frameshift 12 60 SOMATIC GRCh37 SLC25A17-RBX1 TCGA-CN-A63W-01 COL17A1 10 104062258 CFAP43 10 104167737 frameshift 1 9 SOMATIC GRCh37 COL17A1-CFAP43 TCGA-CN-A63W-01 PEAK1 15 77420006 USP31 16 23102463 1 9 SOMATIC GRCh37 PEAK1-USP31 TCGA-CN-A63W-01 OXR1 8 106359636 VPS13B 8 99699525 frameshift 1 3 SOMATIC GRCh37 OXR1-VPS13B TCGA-CN-A641-01 SPRR2G 1 153149904 SPRR1B 1 153032460 in-frame 1000 1000 SOMATIC GRCh37 SPRR2G-SPRR1B TCGA-CN-A642-01 MOB3A 19 2076811 STK11 19 1216268 frameshift 13 71 SOMATIC GRCh37 MOB3A-STK11 TCGA-CN-A6UY-01 CBFA2T2 20 33490301 REM1 20 31476227 1 6 SOMATIC GRCh37 CBFA2T2-REM1 TCGA-CQ-5323-01 CPT1A 11 68773265 SHANK2 11 71174844 6 55 SOMATIC GRCh37 CPT1A-SHANK2 TCGA-CQ-5323-01 CPT1A 11 68839552 FGF3 11 69816423 1 17 SOMATIC GRCh37 CPT1A-FGF3 TCGA-CQ-5323-01 FCHSD2 11 72889829 NUMA1 11 72006263 in-frame 2 9 SOMATIC GRCh37 FCHSD2-NUMA1 TCGA-CQ-5323-01 RNF121 11 71929124 PPFIA1 11 70372212 1 10 SOMATIC GRCh37 RNF121-PPFIA1 TCGA-CQ-5326-01 MTERF1 7 91880055 PHTF2 7 77893608 frameshift 2 3 SOMATIC GRCh37 MTERF1-PHTF2 TCGA-CQ-5326-01 RWDD4 4 183650984 SORBS2 4 185652728 in-frame 1 5 SOMATIC GRCh37 RWDD4-SORBS2 TCGA-CQ-5332-01 PANX1 11 94129493 HEPHL1 11 94111537 in-frame 4 41 SOMATIC GRCh37 PANX1-HEPHL1 TCGA-CQ-5332-01 OSBPL1A 18 24225042 RIOK3 18 23473429 in-frame 2 15 SOMATIC GRCh37 OSBPL1A-RIOK3 TCGA-CQ-5332-01 PARP1 1 226374226 LIN9 1 226250919 in-frame 4 6 SOMATIC GRCh37 PARP1-LIN9 TCGA-CQ-5333-01 EPS8L2 11 709608 AGPAT2 9 136674807 frameshift 95 542 SOMATIC GRCh37 EPS8L2-AGPAT2 TCGA-CQ-5334-01 PDE7A 8 65779720 NRG1 8 32727949 in-frame 4 23 SOMATIC GRCh37 PDE7A-NRG1 TCGA-CQ-6219-01 AKAP13 15 85380798 RFX7 15 56087509 3 56 SOMATIC GRCh37 AKAP13-RFX7 TCGA-CQ-6220-01 CTSA 20 45895133 WFDC3 20 45789945 frameshift 1 6 SOMATIC GRCh37 CTSA-WFDC3 TCGA-CQ-6223-01 SNAPC1 14 61768740 FLJ22447 14 61650962 4 46 SOMATIC GRCh37 SNAPC1-FLJ22447 TCGA-CQ-6224-01 PTPRD 9 9938507 CYGB 17 76528611 1 30 SOMATIC GRCh37 PTPRD-CYGB TCGA-CQ-6224-01 ALG8 11 78124021 FGF19 11 69699576 frameshift 2 7 SOMATIC GRCh37 ALG8-FGF19 TCGA-CQ-6225-01 EIF2AK4 15 39939617 EPB42 15 43203275 frameshift 3 17 SOMATIC GRCh37 EIF2AK4-EPB42 TCGA-CQ-6225-01 DUS1L 17 82060701 CCDC57 17 82101866 in-frame 1 6 SOMATIC GRCh37 DUS1L-CCDC57 TCGA-CQ-6225-01 MYO1B 2 191350225 ZNF536 19 30443561 1 3 SOMATIC GRCh37 MYO1B-ZNF536 TCGA-CQ-6225-01 AP2B1 17 35594067 RAB20 13 110524197 in-frame 1 2 SOMATIC GRCh37 AP2B1-RAB20 TCGA-CQ-6227-01 FRMD6 14 51570410 BPIFB1 20 33286033 14 239 SOMATIC GRCh37 FRMD6-BPIFB1 TCGA-CQ-6228-01 PANX1 11 94153630 CEP126 11 101944265 frameshift 31 126 SOMATIC GRCh37 PANX1-CEP126 TCGA-CQ-6228-01 YIPF1 1 53878315 YTHDF2 1 28768929 frameshift 31 80 SOMATIC GRCh37 YIPF1-YTHDF2 TCGA-CQ-6228-01 EGLN1 1 231420998 C1orf131 1 231239188 frameshift 6 28 SOMATIC GRCh37 EGLN1-C1orf131 TCGA-CQ-6228-01 GALK2 15 49292537 TERB2 15 44978489 in-frame 4 16 SOMATIC GRCh37 GALK2-TERB2 TCGA-CQ-6228-01 LYST 1 235716712 DISC1 1 231795242 frameshift 3 7 SOMATIC GRCh37 LYST-DISC1 TCGA-CQ-6228-01 NCOA2 8 70403700 DCUN1D5 11 103083326 2 5 SOMATIC GRCh37 NCOA2-DCUN1D5 TCGA-CQ-6229-01 SYNE2 14 64020093 ITPK1 14 92993997 in-frame 3 39 SOMATIC GRCh37 SYNE2-ITPK1 TCGA-CQ-7063-01 CDKN2A 9 21974678 MTAP 9 21815433 in-frame 18 48 SOMATIC GRCh37 CDKN2A-MTAP TCGA-CQ-7065-01 NXN 17 979319 WRAP53 17 7700741 in-frame 23 173 SOMATIC GRCh37 NXN-WRAP53 TCGA-CQ-7065-01 NOTCH2 1 120069334 SPAG17 1 117981401 in-frame 6 47 SOMATIC GRCh37 NOTCH2-SPAG17 TCGA-CQ-7065-01 BACH1 21 29329693 DSCR3 21 37240639 in-frame 5 25 SOMATIC GRCh37 BACH1-DSCR3 TCGA-CQ-7067-01 COLGALT1 19 17559421 PGLS 19 17516173 frameshift 1 17 SOMATIC GRCh37 COLGALT1-PGLS TCGA-CQ-7068-01 ZNF57 19 2901048 MRE11 11 94461036 frameshift 1 1 SOMATIC GRCh37 ZNF57-MRE11 TCGA-CQ-7069-01 SERTAD2 2 64750281 TGFA 2 70465733 8 99 SOMATIC GRCh37 SERTAD2-TGFA TCGA-CQ-7071-01 ACTG1 17 81512232 SPRR1B 1 153032327 1 9 SOMATIC GRCh37 ACTG1-SPRR1B TCGA-CQ-7072-01 TMEM117 12 43944342 KIF16B 20 16312418 frameshift 4 24 SOMATIC GRCh37 TMEM117-KIF16B TCGA-CQ-7072-01 TBL1X X 9501849 WWC3 X 10090771 1 6 SOMATIC GRCh37 TBL1X-WWC3 TCGA-CQ-A4C6-01 CHSY1 15 101235255 PPP1CA 11 67401199 in-frame 4 49 SOMATIC GRCh37 CHSY1-PPP1CA TCGA-CQ-A4C9-01 PAIP1 5 43555830 TMEM267 5 43446557 in-frame 2 22 SOMATIC GRCh37 PAIP1-TMEM267 TCGA-CQ-A4C9-01 ELP4 11 31650221 EIF3M 11 32594914 frameshift 1 12 SOMATIC GRCh37 ELP4-EIF3M TCGA-CQ-A4C9-01 UXS1 2 106158058 TMEM241 18 23399647 in-frame 1 5 SOMATIC GRCh37 UXS1-TMEM241 TCGA-CQ-A4C9-01 CIR1 2 174395601 NFE2L2 2 177283805 1000 1000 SOMATIC GRCh37 CIR1-NFE2L2 TCGA-CQ-A4CA-01 GNA12 7 2843853 PHC3 3 170178938 frameshift 2 23 SOMATIC GRCh37 GNA12-PHC3 TCGA-CQ-A4CB-01 PPP1R2 3 195542904 GMNC 3 190860858 frameshift 1 4 SOMATIC GRCh37 PPP1R2-GMNC TCGA-CQ-A4CG-01 MICU1 10 72475100 DNAJB12 10 72336696 frameshift 1 12 SOMATIC GRCh37 MICU1-DNAJB12 TCGA-CQ-A4CH-01 EHBP1 2 62874532 MDH1 2 63594488 in-frame 28 137 SOMATIC GRCh37 EHBP1-MDH1 TCGA-CQ-A4CH-01 CHST10 2 100402564 MAP4K4 2 101823928 in-frame 19 81 SOMATIC GRCh37 CHST10-MAP4K4 TCGA-CQ-A4CH-01 ITSN1 21 33642713 CHODL 21 17917220 1 28 SOMATIC GRCh37 ITSN1-CHODL TCGA-CQ-A4CH-01 PAPLN 14 73274459 MYL4 17 47209389 4 13 SOMATIC GRCh37 PAPLN-MYL4 TCGA-CQ-A4CH-01 TRAPPC10 21 44012560 MDS2 1 23639680 frameshift 2 6 SOMATIC GRCh37 TRAPPC10-MDS2 TCGA-CQ-A4CI-01 SH2D3A 19 6767387 GPM6A 4 175651987 7 38 SOMATIC GRCh37 SH2D3A-GPM6A TCGA-CR-5243-01 COPS7A 12 6724818 RPLP0 12 120197462 in-frame 1 1 SOMATIC GRCh37 COPS7A-RPLP0 TCGA-CR-5247-01 CLN3 16 28484006 C15orf32 15 92500358 5 18 SOMATIC GRCh37 CLN3-C15orf32 TCGA-CR-5247-01 TFDP2 3 142093061 COG5 7 107324521 frameshift 2 29 SOMATIC GRCh37 TFDP2-COG5 TCGA-CR-5247-01 NADSYN1 11 71458544 GSTP1 11 67584685 frameshift 1 3 SOMATIC GRCh37 NADSYN1-GSTP1 TCGA-CR-5248-01 MAGI1 3 65621972 DPH3 3 16260829 frameshift 2 3 SOMATIC GRCh37 MAGI1-DPH3 TCGA-CR-5250-01 SESN1 6 109093795 CENPW 6 126346205 in-frame 1 3 SOMATIC GRCh37 SESN1-CENPW TCGA-CR-5250-01 ZFP36 19 39406928 OAZ1 19 2271385 frameshift 1 1 SOMATIC GRCh37 ZFP36-OAZ1 TCGA-CR-6467-01 TRIP12 2 229879982 PID1 2 229155964 frameshift 12 57 SOMATIC GRCh37 TRIP12-PID1 TCGA-CR-6467-01 ABCC4 13 95177707 ABCB4 7 87409392 in-frame 4 73 SOMATIC GRCh37 ABCC4-ABCB4 TCGA-CR-6467-01 TTC12 11 113344440 LUC7L2 7 139412551 in-frame 3 16 SOMATIC GRCh37 TTC12-LUC7L2 TCGA-CR-6467-01 MTDH 8 97644887 MATN2 8 97961408 in-frame 4 5 SOMATIC GRCh37 MTDH-MATN2 TCGA-CR-6467-01 CLDN10 13 95577338 TTC12 11 113350073 in-frame 2 3 SOMATIC GRCh37 CLDN10-TTC12 TCGA-CR-6470-01 PLEKHA5 12 19132450 DCTN2 12 57535845 frameshift 1 4 SOMATIC GRCh37 PLEKHA5-DCTN2 TCGA-CR-6473-01 FGFR3 4 1806934 TACC3 4 1737598 in-frame 268 1764 SOMATIC GRCh37 FGFR3-TACC3 TCGA-CR-6474-01 TFB2M 1 246564346 SMYD3 1 246335474 in-frame 21 96 SOMATIC GRCh37 TFB2M-SMYD3 TCGA-CR-6474-01 MVP 16 29831073 ZNF267 16 31914476 frameshift 15 54 SOMATIC GRCh37 MVP-ZNF267 TCGA-CR-6478-01 TMBIM4 12 66169855 TMEM131 2 97814388 frameshift 10 96 SOMATIC GRCh37 TMBIM4-TMEM131 TCGA-CR-6478-01 ANKRD23 2 96857888 FAM178B 2 96902707 16 44 SOMATIC GRCh37 ANKRD23-FAM178B TCGA-CR-6478-01 KIF21A 12 39442927 TSPAN8 12 71157787 16 42 SOMATIC GRCh37 KIF21A-TSPAN8 TCGA-CR-6478-01 GPI 19 34396430 EYS 6 65057727 in-frame 9 56 SOMATIC GRCh37 GPI-EYS TCGA-CR-6478-01 HSD17B12 11 43816391 TP53I11 11 44939190 4 12 SOMATIC GRCh37 HSD17B12-TP53I11 TCGA-CR-6478-01 CAV2 7 116500447 TES 7 116249020 in-frame 2 5 SOMATIC GRCh37 CAV2-TES TCGA-CR-6480-01 C1orf174 1 3892883 RAD18 3 8881459 frameshift 30 106 SOMATIC GRCh37 C1orf174-RAD18 TCGA-CR-6480-01 PPARA 22 46151970 SLC16A7 12 59655152 4 44 SOMATIC GRCh37 PPARA-SLC16A7 TCGA-CR-6481-01 KIF21A 12 39331730 IGKJ3 2 88861257 frameshift 59 0 SOMATIC GRCh37 KIF21A-IGKJ3 TCGA-CR-6481-01 CMC1 3 28241812 ZCWPW2 3 28435110 frameshift 2 12 SOMATIC GRCh37 CMC1-ZCWPW2 TCGA-CR-6482-01 ABCB9 12 122966287 MPHOSPH9 12 123166789 1 7 SOMATIC GRCh37 ABCB9-MPHOSPH9 TCGA-CR-6484-01 CDKL3 5 134319471 IGKJ2 2 88861559 in-frame 28 0 SOMATIC GRCh37 CDKL3-IGKJ2 TCGA-CR-6484-01 AGAP1 2 235494849 UBE2F 2 237973092 7 49 SOMATIC GRCh37 AGAP1-UBE2F TCGA-CR-6487-01 SNHG19 16 2154860 CSF1R 5 150086607 33 262 SOMATIC GRCh37 SNHG19-CSF1R TCGA-CR-6487-01 TSC1 9 132921363 DOLPP1 9 129086709 in-frame 16 62 SOMATIC GRCh37 TSC1-DOLPP1 TCGA-CR-6488-01 IP6K1 3 49786354 TRAIP 3 49840373 1 26 SOMATIC GRCh37 IP6K1-TRAIP TCGA-CR-6488-01 AATF 17 37031685 PCDH11X X 92618264 frameshift 2 12 SOMATIC GRCh37 AATF-PCDH11X TCGA-CR-7364-01 ASH2L 8 38110833 LINC03042 8 38516512 in-frame 6 10 SOMATIC GRCh37 ASH2L-LINC03042 TCGA-CR-7364-01 EIF4EBP1 8 38030718 TACC1 8 38846699 frameshift 4 4 SOMATIC GRCh37 EIF4EBP1-TACC1 TCGA-CR-7367-01 TFB2M 1 246548545 SMYD3 1 245929937 in-frame 28 39 SOMATIC GRCh37 TFB2M-SMYD3 TCGA-CR-7367-01 TIAM1 21 31339243 PCBP3 21 45896208 7 19 SOMATIC GRCh37 TIAM1-PCBP3 TCGA-CR-7367-01 XXYLT1 3 195156449 OPA1 3 193614723 in-frame 2 2 SOMATIC GRCh37 XXYLT1-OPA1 TCGA-CR-7368-01 EGFR 7 55019365 SEPT14 7 55807258 in-frame 1 7 SOMATIC GRCh37 EGFR-SEPT14 TCGA-CR-7370-01 SLBP 4 1694774 LETM1 4 1825683 in-frame 16 112 SOMATIC GRCh37 SLBP-LETM1 TCGA-CR-7370-01 PSMD14 2 161385571 CCDC148 2 158220713 in-frame 1 4 SOMATIC GRCh37 PSMD14-CCDC148 TCGA-CR-7371-01 ROCK1 18 21110818 RPL29 3 51995880 12 15 SOMATIC GRCh37 ROCK1-RPL29 TCGA-CR-7371-01 SH3GL1 19 4400324 STAP2 19 4334044 in-frame 1000 1000 SOMATIC GRCh37 SH3GL1-STAP2 TCGA-CR-7374-01 CREBBP 16 3850297 ATG10 5 82058495 in-frame 6 30 SOMATIC GRCh37 CREBBP-ATG10 TCGA-CR-7374-01 IGKC 2 88857255 SPSB1 1 9356106 6 1 SOMATIC GRCh37 IGKC-SPSB1 TCGA-CR-7374-01 CSDE1 1 114737999 CYB5B 16 69430154 4 5 SOMATIC GRCh37 CSDE1-CYB5B TCGA-CR-7374-01 TYW1 7 67195337 SIRPB2 20 1480065 frameshift 2 5 SOMATIC GRCh37 TYW1-SIRPB2 TCGA-CR-7374-01 RALY 20 34031604 RPN2 20 37223878 1 8 SOMATIC GRCh37 RALY-RPN2 TCGA-CR-7374-01 HSD11B1L 19 5687668 SAFB 19 5664022 in-frame 1 5 SOMATIC GRCh37 HSD11B1L-SAFB TCGA-CR-7376-01 APTX 9 33001567 NOL6 9 33472412 in-frame 6 9 SOMATIC GRCh37 APTX-NOL6 TCGA-CR-7376-01 CNTFR 9 34581095 KIF24 9 34297114 1 19 SOMATIC GRCh37 CNTFR-KIF24 TCGA-CR-7376-01 CHMP5 9 33276564 GALT 9 34646677 2 4 SOMATIC GRCh37 CHMP5-GALT TCGA-CR-7376-01 NFX1 9 33319127 ARHGEF39 9 35664126 frameshift 1 3 SOMATIC GRCh37 NFX1-ARHGEF39 TCGA-CR-7376-01 UNC13B 9 35162305 DNAJB5 9 34993200 frameshift 1 1 SOMATIC GRCh37 UNC13B-DNAJB5 TCGA-CR-7377-01 PARD3 10 34814876 ARMC4 10 27907777 frameshift 4 25 SOMATIC GRCh37 PARD3-ARMC4 TCGA-CR-7377-01 ERC1 12 1116033 ANKRD26 10 27005723 frameshift 1 3 SOMATIC GRCh37 ERC1-ANKRD26 TCGA-CR-7379-01 DSG1 18 31340025 DSCAS 18 31150799 6 12 SOMATIC GRCh37 DSG1-DSCAS TCGA-CR-7379-01 GAS6 13 113846527 ATP4B 13 113654942 in-frame 4 10 SOMATIC GRCh37 GAS6-ATP4B TCGA-CR-7379-01 NUDT3 6 34392264 CDH12 5 21817132 frameshift 1 9 SOMATIC GRCh37 NUDT3-CDH12 TCGA-CR-7379-01 ZC3H4 19 47081513 SAE1 19 47203671 frameshift 1 4 SOMATIC GRCh37 ZC3H4-SAE1 TCGA-CR-7380-01 IDH3A 15 78149430 SH2D7 15 78094116 in-frame 4 2 SOMATIC GRCh37 IDH3A-SH2D7 TCGA-CR-7382-01 RNH1 11 507113 HRAS 11 533944 51 314 SOMATIC GRCh37 RNH1-HRAS TCGA-CR-7382-01 NFRKB 11 129892715 FEN1 11 61796922 in-frame 1 10 SOMATIC GRCh37 NFRKB-FEN1 TCGA-CR-7383-01 DCUN1D4 4 51863709 GPM6B X 13785808 in-frame 9 49 SOMATIC GRCh37 DCUN1D4-GPM6B TCGA-CR-7383-01 PCMTD1 8 51898930 ARHGAP26 5 143207198 in-frame 2 1 SOMATIC GRCh37 PCMTD1-ARHGAP26 TCGA-CR-7385-01 TRIM25 17 56892018 TRIM37 17 58982921 frameshift 14 43 SOMATIC GRCh37 TRIM25-TRIM37 TCGA-CR-7386-01 MAP2K5 15 67543470 RAB27A 15 55234956 1 6 SOMATIC GRCh37 MAP2K5-RAB27A TCGA-CR-7388-01 RAP1GDS1 4 98352601 GSTCD 4 105845441 in-frame 4 9 SOMATIC GRCh37 RAP1GDS1-GSTCD TCGA-CR-7388-01 CBFB 16 67029813 ATP13A3 3 194462236 1 9 SOMATIC GRCh37 CBFB-ATP13A3 TCGA-CR-7389-01 ADAM17 2 9555509 ITGB1BP1 2 9418732 1 12 SOMATIC GRCh37 ADAM17-ITGB1BP1 TCGA-CR-7390-01 SHC1 1 154965543 EFNA3 1 155085091 frameshift 7 51 SOMATIC GRCh37 SHC1-EFNA3 TCGA-CR-7390-01 SPIDR 8 47713641 SNX7 1 98760054 frameshift 7 20 SOMATIC GRCh37 SPIDR-SNX7 TCGA-CR-7392-01 LRRC1 6 53795415 MLIP 6 54124473 in-frame 3 24 SOMATIC GRCh37 LRRC1-MLIP TCGA-CR-7392-01 CUX1 7 102115273 CAV2 7 116316432 2 11 SOMATIC GRCh37 CUX1-CAV2 TCGA-CR-7392-01 ROCK2 2 11192148 LPIN1 2 11765533 frameshift 1 3 SOMATIC GRCh37 ROCK2-LPIN1 TCGA-CR-7395-01 GNB1 1 1890820 NADK 1 1757310 11 15 SOMATIC GRCh37 GNB1-NADK TCGA-CR-7397-01 SCMH1 1 41186121 SHISA5 3 48501293 in-frame 2 34 SOMATIC GRCh37 SCMH1-SHISA5 TCGA-CR-7397-01 ITCH 20 34424525 CASS4 20 56445900 frameshift 2 15 SOMATIC GRCh37 ITCH-CASS4 TCGA-CR-7399-01 AK3 9 4722506 RCL1 9 4823548 in-frame 44 168 SOMATIC GRCh37 AK3-RCL1 TCGA-CR-7399-01 DGCR2 22 19122128 ANO1 11 70103066 frameshift 28 123 SOMATIC GRCh37 DGCR2-ANO1 TCGA-CR-7399-01 VTI1B 14 67656416 PLEKHH1 14 67585568 in-frame 7 47 SOMATIC GRCh37 VTI1B-PLEKHH1 TCGA-CR-7401-01 APP 21 26021840 FRG2LP 18 14138856 12 80 SOMATIC GRCh37 APP-FRG2LP TCGA-CR-7402-01 DSG2 18 31541314 DSG4 18 31399272 in-frame 62 275 SOMATIC GRCh37 DSG2-DSG4 TCGA-CR-7402-01 VCL 10 74043153 SEC24C 10 73766760 in-frame 30 103 SOMATIC GRCh37 VCL-SEC24C TCGA-CR-7404-01 EFNA1 1 155128069 FLAD1 1 154989560 frameshift 1 4 SOMATIC GRCh37 EFNA1-FLAD1 TCGA-CV-5430-01 OSGIN2 8 89914746 RIPK2 8 89786593 in-frame 27 61 SOMATIC GRCh37 OSGIN2-RIPK2 TCGA-CV-5430-01 PHF8 X 54022259 SLCO1C1 12 20717132 frameshift 1 7 SOMATIC GRCh37 PHF8-SLCO1C1 TCGA-CV-5431-01 FBXL20 17 39401361 UNC45B 17 35171322 in-frame 33 117 SOMATIC GRCh37 FBXL20-UNC45B TCGA-CV-5431-01 IGHGP 14 105668254 NOTCH1 9 136508977 11 1 SOMATIC GRCh37 IGHGP-NOTCH1 TCGA-CV-5431-01 TGFBRAP1 2 105296356 CCDC146 7 77236947 in-frame 1 3 SOMATIC GRCh37 TGFBRAP1-CCDC146 TCGA-CV-5431-01 ERBB2 17 39715939 CTTN 11 70422940 in-frame 1 1 SOMATIC GRCh37 ERBB2-CTTN TCGA-CV-5432-01 PFKFB4 3 48521986 COL7A1 3 48571278 in-frame 1 5 SOMATIC GRCh37 PFKFB4-COL7A1 TCGA-CV-5434-01 PTPRZ1 7 122055087 TSPAN33 7 129161679 in-frame 14 83 SOMATIC GRCh37 PTPRZ1-TSPAN33 TCGA-CV-5434-01 ROCK1 18 21006351 DCC 18 53386043 in-frame 10 44 SOMATIC GRCh37 ROCK1-DCC TCGA-CV-5434-01 NLK 17 28043331 RAD51D 17 35106481 frameshift 3 10 SOMATIC GRCh37 NLK-RAD51D TCGA-CV-5434-01 NLK 17 28043331 RAD51L3-RFFL 17 35106481 frameshift 3 10 SOMATIC GRCh37 NLK-RAD51L3-RFFL TCGA-CV-5436-01 SLX4IP 20 10458231 SLC24A3 20 19280959 frameshift 2 12 SOMATIC GRCh37 SLX4IP-SLC24A3 TCGA-CV-5436-01 AHR 7 17310123 TSPAN13 7 16783417 frameshift 1 3 SOMATIC GRCh37 AHR-TSPAN13 TCGA-CV-5440-01 FHOD3 18 36687178 MS4A15 11 60763706 3 12 SOMATIC GRCh37 FHOD3-MS4A15 TCGA-CV-5440-01 DTD1 20 18628233 RALGAPA2 20 20546832 in-frame 3 6 SOMATIC GRCh37 DTD1-RALGAPA2 TCGA-CV-5440-01 USP8 15 50490525 MYEF2 15 48168839 in-frame 2 9 SOMATIC GRCh37 USP8-MYEF2 TCGA-CV-5441-01 DDX1 2 15596763 C3orf67 3 58806456 in-frame 1 1 SOMATIC GRCh37 DDX1-C3orf67 TCGA-CV-5442-01 PKP1 1 201332903 JUP 17 41755174 3 7 SOMATIC GRCh37 PKP1-JUP TCGA-CV-5443-01 ITCH 20 34471515 DEFB118 20 31372857 frameshift 47 258 SOMATIC GRCh37 ITCH-DEFB118 TCGA-CV-5443-01 SLC26A11 17 80237594 OAF 11 120228868 in-frame 2 11 SOMATIC GRCh37 SLC26A11-OAF TCGA-CV-5443-01 PLGRKT 9 5431897 CD274 9 5456100 1 10 SOMATIC GRCh37 PLGRKT-CD274 TCGA-CV-5444-01 ESYT2 7 158748194 CNTNAP2 7 147043907 in-frame 1 20 SOMATIC GRCh37 ESYT2-CNTNAP2 TCGA-CV-5444-01 PRR4 12 11121010 SPSB2 12 6882287 2 9 SOMATIC GRCh37 PRR4-SPSB2 TCGA-CV-5970-01 ACAP2 3 195442795 IQCG 3 197914042 frameshift 1 26 SOMATIC GRCh37 ACAP2-IQCG TCGA-CV-5970-01 HSPB11 1 53939985 ZCCHC11 1 52497183 frameshift 1 6 SOMATIC GRCh37 HSPB11-ZCCHC11 TCGA-CV-5971-01 MYBPC2 19 50452003 DES 2 219421340 in-frame 1 9 SOMATIC GRCh37 MYBPC2-DES TCGA-CV-5973-01 NFYA 6 41094497 TSPO2 6 41042966 4 36 SOMATIC GRCh37 NFYA-TSPO2 TCGA-CV-5973-01 OTUB1 11 63988752 RPS6KA4 11 64365301 in-frame 3 14 SOMATIC GRCh37 OTUB1-RPS6KA4 TCGA-CV-5978-01 ADD1 4 2844024 ADK 10 74394141 7 30 SOMATIC GRCh37 ADD1-ADK TCGA-CV-5979-01 GABARAP 17 7241424 GPS2 17 7314659 28 63 SOMATIC GRCh37 GABARAP-GPS2 TCGA-CV-5979-01 IPO9 1 201871327 CSRP1 1 201496304 1 1 SOMATIC GRCh37 IPO9-CSRP1 TCGA-CV-6433-01 RALY 20 34031604 ASXL1 20 32428128 3 12 SOMATIC GRCh37 RALY-ASXL1 TCGA-CV-6441-01 HSPB11 1 53923904 NDC1 1 53772489 in-frame 5 54 SOMATIC GRCh37 HSPB11-NDC1 TCGA-CV-6441-01 OPA3 19 45584623 EML2 19 45642352 in-frame 3 30 SOMATIC GRCh37 OPA3-EML2 TCGA-CV-6933-01 CLNS1A 11 77637590 DCBLD1 6 117532260 frameshift 2 1 SOMATIC GRCh37 CLNS1A-DCBLD1 TCGA-CV-6935-01 ATAD2 8 123369058 ERBB4 2 211665477 frameshift 5 24 SOMATIC GRCh37 ATAD2-ERBB4 TCGA-CV-6936-01 LMAN2L 2 96734409 FAM178B 2 96929320 in-frame 2 29 SOMATIC GRCh37 LMAN2L-FAM178B TCGA-CV-6937-01 PI4KA 22 20793193 CCDC74BP1 22 20592100 48 193 SOMATIC GRCh37 PI4KA-CCDC74BP1 TCGA-CV-6937-01 FKBP1A 20 1392834 CDS2 20 5189067 frameshift 10 64 SOMATIC GRCh37 FKBP1A-CDS2 TCGA-CV-6937-01 ATP11B 3 182869331 TFRC 3 196058632 in-frame 4 30 SOMATIC GRCh37 ATP11B-TFRC TCGA-CV-6937-01 SMPD4P1 22 20613663 KLHL22 22 20471515 6 10 SOMATIC GRCh37 SMPD4P1-KLHL22 TCGA-CV-6937-01 KIAA1549L 11 33574873 WARS2 1 119076607 frameshift 4 10 SOMATIC GRCh37 KIAA1549L-WARS2 TCGA-CV-6937-01 KLHL22 22 20464858 KIAA1549L 11 33656012 frameshift 1 5 SOMATIC GRCh37 KLHL22-KIAA1549L TCGA-CV-6938-01 MBD5 2 148021684 ACVR2A 2 147896301 1 6 SOMATIC GRCh37 MBD5-ACVR2A TCGA-CV-6939-01 ZNF718 4 131505 PLEKHG4B 5 139483 frameshift 4 28 SOMATIC GRCh37 ZNF718-PLEKHG4B TCGA-CV-6939-01 NAALADL1 11 65045822 PATL1 11 59654072 in-frame 1 14 SOMATIC GRCh37 NAALADL1-PATL1 TCGA-CV-6939-01 LRP5 11 68446533 HSCB 22 28743882 in-frame 1 2 SOMATIC GRCh37 LRP5-HSCB TCGA-CV-6940-01 NAA25 12 112087683 SLC25A21 14 36684925 in-frame 18 154 SOMATIC GRCh37 NAA25-SLC25A21 TCGA-CV-6940-01 FAM234A 16 249658 LUC7L 16 208188 2 24 SOMATIC GRCh37 FAM234A-LUC7L TCGA-CV-6941-01 EGFR 7 55019365 ACADM 1 75732644 in-frame 32 172 SOMATIC GRCh37 EGFR-ACADM TCGA-CV-6941-01 TBC1D22A 22 46997709 GCAT 22 37810027 in-frame 5 27 SOMATIC GRCh37 TBC1D22A-GCAT TCGA-CV-6941-01 LPP 3 188609844 P3H2 3 189995442 in-frame 2 32 SOMATIC GRCh37 LPP-P3H2 TCGA-CV-6941-01 LIMK2 22 31258426 ATXN10 22 45806959 in-frame 3 22 SOMATIC GRCh37 LIMK2-ATXN10 TCGA-CV-6941-01 TP63 3 189808526 CYTH3 7 6190531 frameshift 4 16 SOMATIC GRCh37 TP63-CYTH3 TCGA-CV-6941-01 CELSR1 22 46463707 PACSIN2 22 42912157 4 12 SOMATIC GRCh37 CELSR1-PACSIN2 TCGA-CV-6941-01 ATXN10 22 45740538 TUBGCP6 22 50228028 in-frame 2 13 SOMATIC GRCh37 ATXN10-TUBGCP6 TCGA-CV-6941-01 FUS 16 31184396 PRSS36 16 31149731 in-frame 1 11 SOMATIC GRCh37 FUS-PRSS36 TCGA-CV-6941-01 SH3BP1 22 37643788 CACNA1I 22 39661965 in-frame 2 7 SOMATIC GRCh37 SH3BP1-CACNA1I TCGA-CV-6941-01 ARHGEF2 1 155978067 SMG5 1 156274686 1 9 SOMATIC GRCh37 ARHGEF2-SMG5 TCGA-CV-6941-01 PRR14L 22 31738387 SOX10 22 37983868 2 5 SOMATIC GRCh37 PRR14L-SOX10 TCGA-CV-6941-01 SMARCB1 22 23825415 ACR 22 50744061 frameshift 1 8 SOMATIC GRCh37 SMARCB1-ACR TCGA-CV-6948-01 TTC38 22 46278661 NACAP1 8 101367623 33 136 SOMATIC GRCh37 TTC38-NACAP1 TCGA-CV-6948-01 ZNF410 14 73909430 LIN52 14 74198922 in-frame 5 38 SOMATIC GRCh37 ZNF410-LIN52 TCGA-CV-6948-01 YME1L1 10 27142387 ANKRD26 10 26995147 frameshift 4 37 SOMATIC GRCh37 YME1L1-ANKRD26 TCGA-CV-6948-01 DGCR8 22 20080383 SGSM1 22 24844897 5 30 SOMATIC GRCh37 DGCR8-SGSM1 TCGA-CV-6948-01 MKRN2 3 12576741 C12orf75 12 105326970 2 22 SOMATIC GRCh37 MKRN2-C12orf75 TCGA-CV-6948-01 ERC1 12 991487 GRK3 22 25604377 1 17 SOMATIC GRCh37 ERC1-GRK3 TCGA-CV-6948-01 LHPP 10 124484326 TANGO6 16 69022828 in-frame 2 11 SOMATIC GRCh37 LHPP-TANGO6 TCGA-CV-6948-01 MRPS6 21 34073745 MYO3A 10 26201265 in-frame 2 11 SOMATIC GRCh37 MRPS6-MYO3A TCGA-CV-6948-01 SLC5A3 21 34073745 MYO3A 10 26201265 2 11 SOMATIC GRCh37 SLC5A3-MYO3A TCGA-CV-6948-01 ATP10D 4 47485519 GABRB1 4 47031914 1 3 SOMATIC GRCh37 ATP10D-GABRB1 TCGA-CV-6950-01 ABL1 9 130714455 EXOSC2 9 130695492 frameshift 2 11 SOMATIC GRCh37 ABL1-EXOSC2 TCGA-CV-6951-01 AAMDC 11 77842628 SCGB1D1 11 62192056 frameshift 1 4 SOMATIC GRCh37 AAMDC-SCGB1D1 TCGA-CV-6953-01 USP9X X 41162877 MRPS31 13 40729601 frameshift 3 61 SOMATIC GRCh37 USP9X-MRPS31 TCGA-CV-6953-01 S100A9 1 153358361 IGHG1 14 105742844 frameshift 3 59 SOMATIC GRCh37 S100A9-IGHG1 TCGA-CV-6953-01 SELENOW 19 47780749 EHD2 19 47716558 3 34 SOMATIC GRCh37 SELENOW-EHD2 TCGA-CV-6953-01 ROCK1 18 21110818 B4GALT6 18 31666372 frameshift 5 18 SOMATIC GRCh37 ROCK1-B4GALT6 TCGA-CV-6953-01 IKBKG X 154547745 GAB3 X 154716329 3 21 SOMATIC GRCh37 IKBKG-GAB3 TCGA-CV-6953-01 TRAPPC9 8 140405577 PTK2 8 140686694 in-frame 3 19 SOMATIC GRCh37 TRAPPC9-PTK2 TCGA-CV-6953-01 ASCC1 10 72196811 MICU1 10 72408037 in-frame 2 3 SOMATIC GRCh37 ASCC1-MICU1 TCGA-CV-6953-01 PARD3 10 34331117 HTRA1 10 122488902 in-frame 1 6 SOMATIC GRCh37 PARD3-HTRA1 TCGA-CV-6953-01 SPRR2E 1 153093553 SPRR2G 1 153150031 in-frame 1000 1000 SOMATIC GRCh37 SPRR2E-SPRR2G TCGA-CV-6954-01 FHOD3 18 36372744 MOCOS 18 36256968 in-frame 2 14 SOMATIC GRCh37 FHOD3-MOCOS TCGA-CV-6956-01 FSCN1 7 5605384 FBXL18 7 5438651 6 21 SOMATIC GRCh37 FSCN1-FBXL18 TCGA-CV-6959-01 TPX2 20 31778984 RALY 20 34072066 19 81 SOMATIC GRCh37 TPX2-RALY TCGA-CV-6961-01 TMED10 14 75176355 TTLL5 14 75820007 in-frame 42 164 SOMATIC GRCh37 TMED10-TTLL5 TCGA-CV-6961-01 CUX1 7 102070417 THSD7A 7 11636961 in-frame 1 26 SOMATIC GRCh37 CUX1-THSD7A TCGA-CV-6961-01 TTLL5 14 75793100 TMED10 14 75152143 in-frame 3 10 SOMATIC GRCh37 TTLL5-TMED10 TCGA-CV-6961-01 PCNT 21 46391376 POC1A 3 52075985 frameshift 1 3 SOMATIC GRCh37 PCNT-POC1A TCGA-CV-6961-01 EED 11 86250449 HIKESHI 11 86306246 1000 1000 SOMATIC GRCh37 EED-HIKESHI TCGA-CV-6962-01 C6orf48 6 31837435 TRIM40 6 30136412 3 5 SOMATIC GRCh37 C6orf48-TRIM40 TCGA-CV-7090-01 DHX15 4 24548855 RBPJ 4 26386353 frameshift 6 21 SOMATIC GRCh37 DHX15-RBPJ TCGA-CV-7090-01 NRP2 2 205683363 PARD3B 2 205553324 frameshift 5 14 SOMATIC GRCh37 NRP2-PARD3B TCGA-CV-7091-01 XPR1 1 180836716 TOR3A 1 179097828 in-frame 25 111 SOMATIC GRCh37 XPR1-TOR3A TCGA-CV-7097-01 MCTP1 5 94923962 TNC 9 115021267 in-frame 9 18 SOMATIC GRCh37 MCTP1-TNC TCGA-CV-7097-01 HELZ2 20 63572108 FNDC11 20 63555654 3 9 SOMATIC GRCh37 HELZ2-FNDC11 TCGA-CV-7099-01 LINC-PINT 7 131052425 GNGT1 7 93886506 5 3 SOMATIC GRCh37 LINC-PINT-GNGT1 TCGA-CV-7099-01 DLST 14 74889349 AHSA1 14 77464598 in-frame 1 1 SOMATIC GRCh37 DLST-AHSA1 TCGA-CV-7100-01 FGFR3 4 1806934 TACC3 4 1739702 in-frame 567 2161 SOMATIC GRCh37 FGFR3-TACC3 TCGA-CV-7100-01 LDLR 19 11089615 HSH2D 19 16152552 frameshift 89 347 SOMATIC GRCh37 LDLR-HSH2D TCGA-CV-7100-01 SART1 11 65967821 CNTN5 11 99819544 frameshift 6 21 SOMATIC GRCh37 SART1-CNTN5 TCGA-CV-7101-01 RIOK3 18 23453502 TAF4B 18 26389845 in-frame 11 34 SOMATIC GRCh37 RIOK3-TAF4B TCGA-CV-7101-01 GGCT 7 30498803 ZNRF2 7 30323642 frameshift 2 13 SOMATIC GRCh37 GGCT-ZNRF2 TCGA-CV-7101-01 TBL1XR1 3 177197121 KIAA1456 8 13006202 1 9 SOMATIC GRCh37 TBL1XR1-KIAA1456 TCGA-CV-7102-01 MGRN1 16 4665151 SNX29 16 12477719 in-frame 4 11 SOMATIC GRCh37 MGRN1-SNX29 TCGA-CV-7102-01 EFL1 15 82214717 CDADC1 13 49274291 in-frame 3 9 SOMATIC GRCh37 EFL1-CDADC1 TCGA-CV-7103-01 ACTL6A 3 179570241 ALG3 3 184245812 in-frame 36 129 SOMATIC GRCh37 ACTL6A-ALG3 TCGA-CV-7103-01 DNAJC19 3 180988023 ADK 10 74525256 in-frame 19 112 SOMATIC GRCh37 DNAJC19-ADK TCGA-CV-7103-01 FRMD6 14 51491534 ABHD12B 14 50901829 2 1 SOMATIC GRCh37 FRMD6-ABHD12B TCGA-CV-7104-01 LAMA3 18 23777619 SNRPD1 18 21629062 in-frame 34 217 SOMATIC GRCh37 LAMA3-SNRPD1 TCGA-CV-7104-01 CD72 9 35646403 TLN1 9 35703676 1 34 SOMATIC GRCh37 CD72-TLN1 TCGA-CV-7104-01 ACTB 7 5529535 COL17A1 10 104041344 frameshift 1 7 SOMATIC GRCh37 ACTB-COL17A1 TCGA-CV-7177-01 PSMD1 2 231146356 ATP2C1 3 130940630 in-frame 2 33 SOMATIC GRCh37 PSMD1-ATP2C1 TCGA-CV-7177-01 DIP2C 10 472439 TECTA 11 121125302 frameshift 1 8 SOMATIC GRCh37 DIP2C-TECTA TCGA-CV-7235-01 SLC39A6 18 36114097 MAST2 1 46019596 frameshift 20 34 SOMATIC GRCh37 SLC39A6-MAST2 TCGA-CV-7235-01 MACF1 1 39105717 AKIRIN1 1 38998171 in-frame 18 38 SOMATIC GRCh37 MACF1-AKIRIN1 TCGA-CV-7235-01 CAP1 1 40061812 KCNQ4 1 40819875 in-frame 19 32 SOMATIC GRCh37 CAP1-KCNQ4 TCGA-CV-7235-01 ARHGAP42 11 100687832 YAP1 11 102205893 in-frame 5 25 SOMATIC GRCh37 ARHGAP42-YAP1 TCGA-CV-7235-01 ZNF385B 2 179861101 FKBP7 2 178465931 4 26 SOMATIC GRCh37 ZNF385B-FKBP7 TCGA-CV-7235-01 MAST2 1 46023980 CARD16 11 105044658 in-frame 1 4 SOMATIC GRCh37 MAST2-CARD16 TCGA-CV-7236-01 RNF216 7 5725324 MTHFD1L 6 151009819 in-frame 20 63 SOMATIC GRCh37 RNF216-MTHFD1L TCGA-CV-7236-01 MTHFD1L 6 150972058 RNF216 7 5721172 in-frame 2 12 SOMATIC GRCh37 MTHFD1L-RNF216 TCGA-CV-7238-01 ZC3H3 8 143536257 TOP1MT 8 143331339 frameshift 5 30 SOMATIC GRCh37 ZC3H3-TOP1MT TCGA-CV-7238-01 GLIPR2 9 36150949 GALT 9 34646677 2 4 SOMATIC GRCh37 GLIPR2-GALT TCGA-CV-7238-01 KLHL5 4 39045096 SLC16A2 X 74520990 2 3 SOMATIC GRCh37 KLHL5-SLC16A2 TCGA-CV-7242-01 PER3 1 7794008 CAMTA1 1 7732448 frameshift 1 3 SOMATIC GRCh37 PER3-CAMTA1 TCGA-CV-7245-01 HNRNPUL1 19 41281275 BCKDHA 19 41410637 in-frame 11 194 SOMATIC GRCh37 HNRNPUL1-BCKDHA TCGA-CV-7247-01 SRRM2 16 2760499 PRSS33 16 2786604 6 48 SOMATIC GRCh37 SRRM2-PRSS33 TCGA-CV-7247-01 PANX1 11 94129493 HEPHL1 11 94093501 frameshift 2 15 SOMATIC GRCh37 PANX1-HEPHL1 TCGA-CV-7247-01 INIP 9 112716461 C9orf84 9 111786035 frameshift 3 4 SOMATIC GRCh37 INIP-C9orf84 TCGA-CV-7248-01 CENPC 4 67518156 STAP1 4 67558752 14 98 SOMATIC GRCh37 CENPC-STAP1 TCGA-CV-7248-01 DST 6 56503997 FBLN5 14 91937201 frameshift 20 51 SOMATIC GRCh37 DST-FBLN5 TCGA-CV-7248-01 MPP6 7 24623784 OSBPL3 7 24863599 frameshift 6 23 SOMATIC GRCh37 MPP6-OSBPL3 TCGA-CV-7248-01 SACS 13 23358335 PHF3 6 63778066 in-frame 2 6 SOMATIC GRCh37 SACS-PHF3 TCGA-CV-7253-01 DHCR24 1 54854037 PCNX2 1 233179175 in-frame 105 338 SOMATIC GRCh37 DHCR24-PCNX2 TCGA-CV-7253-01 PXN 12 120221623 MSI1 12 120343105 43 192 SOMATIC GRCh37 PXN-MSI1 TCGA-CV-7253-01 NOL9 1 6554107 DNAJC11 1 6681037 in-frame 7 30 SOMATIC GRCh37 NOL9-DNAJC11 TCGA-CV-7253-01 GRHL2 8 101492789 TRIM13 13 49997667 5 24 SOMATIC GRCh37 GRHL2-TRIM13 TCGA-CV-7253-01 RITA1 12 113187048 GRHL2 8 101543241 in-frame 4 11 SOMATIC GRCh37 RITA1-GRHL2 TCGA-CV-7253-01 PCNX2 1 233198939 TP73 1 3682333 2 3 SOMATIC GRCh37 PCNX2-TP73 TCGA-CV-7253-01 CSNK1G1 15 64300319 INTS2 17 61869988 frameshift 1 5 SOMATIC GRCh37 CSNK1G1-INTS2 TCGA-CV-7253-01 GRHL2 8 101492789 KCNRG 13 50020214 in-frame 1 2 SOMATIC GRCh37 GRHL2-KCNRG TCGA-CV-7254-01 RAB3D 19 11337172 DMBT1 10 122635991 frameshift 1 9 SOMATIC GRCh37 RAB3D-DMBT1 TCGA-CV-7254-01 LAMA3 18 23810503 ADHFE1 8 66460308 in-frame 1 5 SOMATIC GRCh37 LAMA3-ADHFE1 TCGA-CV-7255-01 HIRA 22 19431440 BCL2L13 22 17726677 in-frame 16 29 SOMATIC GRCh37 HIRA-BCL2L13 TCGA-CV-7255-01 AAK1 2 69556860 GALNT14 2 31147110 2 9 SOMATIC GRCh37 AAK1-GALNT14 TCGA-CV-7255-01 CELSR2 1 109273892 SORT1 1 109312131 1000 1000 SOMATIC GRCh37 CELSR2-SORT1 TCGA-CV-7261-01 GOLIM4 3 168024526 SLC40A1 2 189575320 in-frame 18 58 SOMATIC GRCh37 GOLIM4-SLC40A1 TCGA-CV-7261-01 ARHGEF2 1 155978365 UBQLN4 1 156051857 in-frame 1 5 SOMATIC GRCh37 ARHGEF2-UBQLN4 TCGA-CV-7261-01 PCCA 13 100157340 FSIP2 2 185828156 frameshift 1 5 SOMATIC GRCh37 PCCA-FSIP2 TCGA-CV-7261-01 SHROOM3 4 76586469 COL8A1 3 99744897 1 2 SOMATIC GRCh37 SHROOM3-COL8A1 TCGA-CV-7263-01 C1orf21 1 184477603 LAMC1 1 183116577 frameshift 3 4 SOMATIC GRCh37 C1orf21-LAMC1 TCGA-CV-7406-01 FBXO28 1 224114396 LYZL2 10 30612900 frameshift 13 50 SOMATIC GRCh37 FBXO28-LYZL2 TCGA-CV-7406-01 PDE5A 4 119596523 C4orf3 4 119298779 frameshift 2 27 SOMATIC GRCh37 PDE5A-C4orf3 TCGA-CV-7407-01 PTPRD 9 8733780 IDO1 8 39913889 11 68 SOMATIC GRCh37 PTPRD-IDO1 TCGA-CV-7407-01 TSHZ3 19 31349180 IFNL1 19 39296805 frameshift 7 10 SOMATIC GRCh37 TSHZ3-IFNL1 TCGA-CV-7407-01 HACL1 3 15571668 METTL6 3 15384187 frameshift 2 22 SOMATIC GRCh37 HACL1-METTL6 TCGA-CV-7407-01 PPP1R21 2 48511468 GTF2A1L 2 48669722 in-frame 4 5 SOMATIC GRCh37 PPP1R21-GTF2A1L TCGA-CV-7407-01 FNBP1 9 129957360 MFSD14CP 9 96918826 1 12 SOMATIC GRCh37 FNBP1-MFSD14CP TCGA-CV-7407-01 CALD1 7 134843971 AKR1B15 7 134564598 1 7 SOMATIC GRCh37 CALD1-AKR1B15 TCGA-CV-7407-01 CDC42BPA 1 227080893 PRKG1 10 51153164 in-frame 1 6 SOMATIC GRCh37 CDC42BPA-PRKG1 TCGA-CV-7409-01 TRAK2 2 201420417 KCTD18 2 200507091 7 57 SOMATIC GRCh37 TRAK2-KCTD18 TCGA-CV-7410-01 LPP 3 188225527 CLSTN2 3 140532324 6 30 SOMATIC GRCh37 LPP-CLSTN2 TCGA-CV-7410-01 APP 21 26089943 TMEM50B 21 33468926 1 33 SOMATIC GRCh37 APP-TMEM50B TCGA-CV-7413-01 KPNA4 3 160565214 IFT80 3 160384646 7 21 SOMATIC GRCh37 KPNA4-IFT80 TCGA-CV-7413-01 SUPT7L 2 27660984 RBKS 2 27781788 frameshift 4 9 SOMATIC GRCh37 SUPT7L-RBKS TCGA-CV-7414-01 PIK3R3 1 46131847 ZSWIM5 1 45088237 in-frame 2 15 SOMATIC GRCh37 PIK3R3-ZSWIM5 TCGA-CV-7414-01 ITGA2 5 52989532 NDUFS4 5 53646233 in-frame 1 4 SOMATIC GRCh37 ITGA2-NDUFS4 TCGA-CV-7414-01 BICD2 9 92715253 ASPN 9 92466571 in-frame 1 3 SOMATIC GRCh37 BICD2-ASPN TCGA-CV-7415-01 GLTSCR1 19 47673762 ZNF793 19 37548362 8 15 SOMATIC GRCh37 GLTSCR1-ZNF793 TCGA-CV-7415-01 SMARCA2 9 2088613 DMRT1 9 916763 in-frame 4 28 SOMATIC GRCh37 SMARCA2-DMRT1 TCGA-CV-7415-01 GTF2IRD1 7 74454176 HSPB1 7 76303802 2 1 SOMATIC GRCh37 GTF2IRD1-HSPB1 TCGA-CV-7416-01 TUBGCP3 13 112565111 TFDP1 13 113610996 in-frame 5 151 SOMATIC GRCh37 TUBGCP3-TFDP1 TCGA-CV-7416-01 CHST11 12 104457514 HCFC2 12 104066167 in-frame 2 4 SOMATIC GRCh37 CHST11-HCFC2 TCGA-CV-7416-01 RSPH3 6 158999712 MIF4GD 17 75268192 in-frame 1000 1000 SOMATIC GRCh37 RSPH3-MIF4GD TCGA-CV-7418-01 LRP5 11 68312805 CLPB 11 72359008 in-frame 6 29 SOMATIC GRCh37 LRP5-CLPB TCGA-CV-7418-01 NIPBL 5 36958231 SPEF2 5 35753624 frameshift 6 15 SOMATIC GRCh37 NIPBL-SPEF2 TCGA-CV-7418-01 FOXK2 17 82582934 FN3KRP 17 82726480 frameshift 4 19 SOMATIC GRCh37 FOXK2-FN3KRP TCGA-CV-7418-01 PMS1 2 189873656 HIBCH 2 190246212 in-frame 2 4 SOMATIC GRCh37 PMS1-HIBCH TCGA-CV-7421-01 EWSR1 22 29273864 ABR 17 1125367 in-frame 14 48 SOMATIC GRCh37 EWSR1-ABR TCGA-CV-7421-01 VPS41 7 38789801 AES 19 3054194 frameshift 10 37 SOMATIC GRCh37 VPS41-AES TCGA-CV-7421-01 PLAT 8 42207494 EFCAB8 20 32943636 5 15 SOMATIC GRCh37 PLAT-EFCAB8 TCGA-CV-7421-01 BCR 22 23182239 TOM1 22 35327271 frameshift 3 12 SOMATIC GRCh37 BCR-TOM1 TCGA-CV-7421-01 PLA2G6 22 38142050 SCARF2 22 20426020 4 7 SOMATIC GRCh37 PLA2G6-SCARF2 TCGA-CV-7421-01 TPX2 20 31760179 DUSP15 20 31850676 frameshift 2 14 SOMATIC GRCh37 TPX2-DUSP15 TCGA-CV-7422-01 TRABD 22 50185976 DDR2 1 162655211 5 17 SOMATIC GRCh37 TRABD-DDR2 TCGA-CV-7422-01 ARFIP1 4 152780226 DCTD 4 182915575 2 1 SOMATIC GRCh37 ARFIP1-DCTD TCGA-CV-7422-01 ANKRD42 11 83198642 PICALM 11 85959060 in-frame 1 1 SOMATIC GRCh37 ANKRD42-PICALM TCGA-CV-7424-01 DTNB 2 25451548 CNOT4 7 135422353 in-frame 6 16 SOMATIC GRCh37 DTNB-CNOT4 TCGA-CV-7424-01 AP2A2 11 926088 TRIM22 11 5697248 frameshift 4 7 SOMATIC GRCh37 AP2A2-TRIM22 TCGA-CV-7424-01 PPIL2 22 21683257 KIAA1671 22 25181699 in-frame 1 3 SOMATIC GRCh37 PPIL2-KIAA1671 TCGA-CV-7424-01 ANKIB1 7 92392292 GNAI1 7 80199225 in-frame 1 1 SOMATIC GRCh37 ANKIB1-GNAI1 TCGA-CV-7428-01 NFIX 19 13025552 RALGPS1 9 127166069 in-frame 7 26 SOMATIC GRCh37 NFIX-RALGPS1 TCGA-CV-7428-01 TMEM51 1 15153954 KAZN 1 15043989 7 15 SOMATIC GRCh37 TMEM51-KAZN TCGA-CV-7428-01 SMU1 9 33068824 B4GALT1 9 33104781 in-frame 3 6 SOMATIC GRCh37 SMU1-B4GALT1 TCGA-CV-7429-01 GNA13 17 65053502 BMI1 10 22328134 frameshift 9 51 SOMATIC GRCh37 GNA13-BMI1 TCGA-CV-7430-01 ELP3 8 28158633 MYO5C 15 52208643 in-frame 9 33 SOMATIC GRCh37 ELP3-MYO5C TCGA-CV-7430-01 IRAK2 3 10165048 SRGAP3 3 9124917 in-frame 8 36 SOMATIC GRCh37 IRAK2-SRGAP3 TCGA-CV-7430-01 PDLIM1 10 95263864 SORBS1 10 95322021 frameshift 2 6 SOMATIC GRCh37 PDLIM1-SORBS1 TCGA-CV-7433-01 LAMB3 1 209622536 NAMPT 7 106254504 frameshift 3 11 SOMATIC GRCh37 LAMB3-NAMPT TCGA-CV-7433-01 MFF 2 227328789 COL4A3 2 227282365 4 6 SOMATIC GRCh37 MFF-COL4A3 TCGA-CV-7434-01 PQLC1 18 79943329 HSBP1L1 18 79966612 frameshift 28 210 SOMATIC GRCh37 PQLC1-HSBP1L1 TCGA-CV-7434-01 OPA1 3 193593409 ATP13A4 3 193459231 in-frame 8 24 SOMATIC GRCh37 OPA1-ATP13A4 TCGA-CV-7435-01 NEDD4L 18 58165861 UBE2G1 17 4307123 frameshift 8 68 SOMATIC GRCh37 NEDD4L-UBE2G1 TCGA-CV-7437-01 DPY19L1 7 35010468 SDK1 7 3821450 in-frame 3 21 SOMATIC GRCh37 DPY19L1-SDK1 TCGA-CV-7438-01 PPP1R12A 12 79934695 TPGS2 18 36818973 frameshift 1 2 SOMATIC GRCh37 PPP1R12A-TPGS2 TCGA-CV-7440-01 KMT2C 7 152205106 GTF2IRD1 7 74589851 in-frame 29 35 SOMATIC GRCh37 KMT2C-GTF2IRD1 TCGA-CV-7446-01 ARG2 14 67651346 IPPK 9 92652639 4 12 SOMATIC GRCh37 ARG2-IPPK TCGA-CV-7446-01 NCOA2 8 70403700 EIF3E 8 108203503 1 1 SOMATIC GRCh37 NCOA2-EIF3E TCGA-CV-7446-01 IPPK 9 92656456 VTI1B 14 67651481 in-frame 1000 1000 SOMATIC GRCh37 IPPK-VTI1B TCGA-CV-7568-01 PGAP1 2 196870941 ZDBF2 2 206304717 frameshift 9 66 SOMATIC GRCh37 PGAP1-ZDBF2 TCGA-CV-A45P-01 EXOC2 6 488979 FRMD4B 3 69336586 1 28 SOMATIC GRCh37 EXOC2-FRMD4B TCGA-CV-A45R-01 REV1 2 99489817 TMEM131 2 97776018 2 7 SOMATIC GRCh37 REV1-TMEM131 TCGA-CV-A45T-01 SEC23B 20 18525932 ZCCHC7 9 37349357 in-frame 8 26 SOMATIC GRCh37 SEC23B-ZCCHC7 TCGA-CV-A45T-01 DENND1A 9 123557570 ENG 9 127818832 in-frame 2 8 SOMATIC GRCh37 DENND1A-ENG TCGA-CV-A45T-01 ZCCHC7 9 37327834 SEC23B 20 18542296 in-frame 1 6 SOMATIC GRCh37 ZCCHC7-SEC23B TCGA-CV-A45U-01 C11orf68 11 65919042 DRAP1 11 65920019 21 32 SOMATIC GRCh37 C11orf68-DRAP1 TCGA-CV-A45W-01 C14orf2 14 103921470 BRF1 14 105252579 14 33 SOMATIC GRCh37 C14orf2-BRF1 TCGA-CV-A45X-01 VPS53 17 697418 ABR 17 1100735 in-frame 6 21 SOMATIC GRCh37 VPS53-ABR TCGA-CV-A45X-01 PPFIA1 11 70272436 RBM4 11 66639700 6 20 SOMATIC GRCh37 PPFIA1-RBM4 TCGA-CV-A45X-01 KREMEN1 22 29073227 MAPK1 22 21769320 frameshift 2 4 SOMATIC GRCh37 KREMEN1-MAPK1 TCGA-CV-A45X-01 ADAM9 8 39091346 ERCC8 5 60928959 frameshift 1 2 SOMATIC GRCh37 ADAM9-ERCC8 TCGA-CV-A45Y-01 CAPS2 12 75371079 KCNC2 12 75051317 2 4 SOMATIC GRCh37 CAPS2-KCNC2 TCGA-CV-A461-01 MOB3A 19 2078140 DAND5 19 12973389 frameshift 6 13 SOMATIC GRCh37 MOB3A-DAND5 TCGA-CV-A464-01 ZNF462 9 106984409 RAD23B 9 107306379 in-frame 2 15 SOMATIC GRCh37 ZNF462-RAD23B TCGA-CV-A465-01 ZNF267 16 31885256 GPR180 13 94621078 in-frame 5 36 SOMATIC GRCh37 ZNF267-GPR180 TCGA-CV-A465-01 MRPL30 2 99181249 FAM178B 2 96960440 8 2 SOMATIC GRCh37 MRPL30-FAM178B TCGA-CV-A6JD-01 YWHAZ 8 100951929 UBA1 X 47198803 2 1 SOMATIC GRCh37 YWHAZ-UBA1 TCGA-CV-A6JE-01 HELZ 17 67151046 PSMD12 17 67341052 frameshift 8 69 SOMATIC GRCh37 HELZ-PSMD12 TCGA-CV-A6JN-01 CTTN 11 70422995 FHIT 3 60014075 in-frame 2 36 SOMATIC GRCh37 CTTN-FHIT TCGA-CV-A6JU-01 IGSF3 1 116666284 C1orf137 1 116694759 15 48 SOMATIC GRCh37 IGSF3-C1orf137 TCGA-CX-7085-01 SPRR2G 1 153150014 SPRR2D 1 153040291 in-frame 1000 1000 SOMATIC GRCh37 SPRR2G-SPRR2D TCGA-CX-7086-01 TBC1D10A 22 30299444 POLR3H 22 41540795 in-frame 8 20 SOMATIC GRCh37 TBC1D10A-POLR3H TCGA-CX-7086-01 CBX7 22 39149789 VPREB1 22 22244946 frameshift 4 14 SOMATIC GRCh37 CBX7-VPREB1 TCGA-CX-7086-01 BCR 22 23182239 UPB1 22 24500107 frameshift 1 14 SOMATIC GRCh37 BCR-UPB1 TCGA-CX-7086-01 OSBP2 22 30870682 NF2 22 29642202 in-frame 1 12 SOMATIC GRCh37 OSBP2-NF2 TCGA-CX-7086-01 CRCT1 1 152516010 SPRR2A 1 153056653 1000 1000 SOMATIC GRCh37 CRCT1-SPRR2A TCGA-CX-7219-01 EMP2 16 10532204 SORL1 11 121590488 24 0 SOMATIC GRCh37 EMP2-SORL1 TCGA-D6-6515-01 NDUFA7 19 8316496 PRKCG 19 53903073 frameshift 22 78 SOMATIC GRCh37 NDUFA7-PRKCG TCGA-D6-6517-01 IFT20 17 28335340 VTN 17 28370270 12 123 SOMATIC GRCh37 IFT20-VTN TCGA-D6-6517-01 DST 6 56458370 HMGN1 21 39349057 6 8 SOMATIC GRCh37 DST-HMGN1 TCGA-D6-6517-01 F3 1 94541537 C11orf80 11 66816053 in-frame 2 2 SOMATIC GRCh37 F3-C11orf80 TCGA-D6-6825-01 LAMB3 1 209622536 NAB1 2 190673101 frameshift 15 19 SOMATIC GRCh37 LAMB3-NAB1 TCGA-D6-6825-01 USP16 21 29030773 CNBD2 20 35972629 in-frame 4 27 SOMATIC GRCh37 USP16-CNBD2 TCGA-D6-6826-01 VGLL4 3 11601833 CHL1 3 377818 in-frame 11 102 SOMATIC GRCh37 VGLL4-CHL1 TCGA-D6-6826-01 RNF130 5 180013061 TBC1D9B 5 179904812 frameshift 1 5 SOMATIC GRCh37 RNF130-TBC1D9B TCGA-D6-6826-01 SDK2 17 73365258 CDC42EP4 17 73286612 1000 1000 SOMATIC GRCh37 SDK2-CDC42EP4 TCGA-D6-6827-01 RB1 13 48307406 HTR2C X 114906589 frameshift 5 28 SOMATIC GRCh37 RB1-HTR2C TCGA-D6-6827-01 USPL1 13 30618056 RB1 13 48342599 4 5 SOMATIC GRCh37 USPL1-RB1 TCGA-D6-8568-01 NLRC5 16 57017188 CYB5B 16 69459093 15 62 SOMATIC GRCh37 NLRC5-CYB5B TCGA-D6-8568-01 OTUB1 11 64001520 GBA1 1 155238650 frameshift 1 2 SOMATIC GRCh37 OTUB1-GBA1 TCGA-D6-8569-01 COL5A1 9 134772834 SPATA31D3 9 81946468 frameshift 9 22 SOMATIC GRCh37 COL5A1-SPATA31D3 TCGA-D6-8569-01 CAMSAP1 9 135907000 SDCCAG3 9 136407938 in-frame 2 23 SOMATIC GRCh37 CAMSAP1-SDCCAG3 TCGA-D6-8569-01 RXRA 9 134421805 PRRC2B 9 131430090 2 9 SOMATIC GRCh37 RXRA-PRRC2B TCGA-D6-A4Z9-01 DYRK1A 21 37367628 IFNGR2 21 33421480 10 15 SOMATIC GRCh37 DYRK1A-IFNGR2 TCGA-D6-A4Z9-01 DIP2A 21 46509376 NRIP1 21 14968526 3 12 SOMATIC GRCh37 DIP2A-NRIP1 TCGA-D6-A4ZB-01 PRMT2 21 46649739 WRB 21 39390698 in-frame 3 8 SOMATIC GRCh37 PRMT2-WRB TCGA-D6-A4ZB-01 C1S 12 7063067 PTPRO 12 15410280 2 5 SOMATIC GRCh37 C1S-PTPRO TCGA-D6-A4ZB-01 SCAPER 15 76404524 TMEM266 15 76134168 2 5 SOMATIC GRCh37 SCAPER-TMEM266 TCGA-D6-A6EM-01 ITGB5 3 124901266 FGL1 8 17885571 1 6 SOMATIC GRCh37 ITGB5-FGL1 TCGA-D6-A6EN-01 MINK1 17 4833640 ALOX12 17 7000336 in-frame 6 25 SOMATIC GRCh37 MINK1-ALOX12 TCGA-D6-A6EO-01 FAM160A1 4 151409465 HPF1 4 169753835 6 32 SOMATIC GRCh37 FAM160A1-HPF1 TCGA-D6-A6ES-01 PSMC6 14 52711524 KANSL2 12 48655060 in-frame 3 1 SOMATIC GRCh37 PSMC6-KANSL2 TCGA-D6-A74Q-01 STIP1 11 64186270 UBE2G1 17 4307123 frameshift 16 45 SOMATIC GRCh37 STIP1-UBE2G1 TCGA-D6-A74Q-01 ANKRD12 18 9137873 RIOK3 18 23462964 1 3 SOMATIC GRCh37 ANKRD12-RIOK3 TCGA-DQ-5624-01 ERP44 9 100052417 CHRDL2 11 74718832 in-frame 53 246 SOMATIC GRCh37 ERP44-CHRDL2 TCGA-DQ-5624-01 SLC2A11 22 23875241 LLPH 12 66124018 in-frame 15 99 SOMATIC GRCh37 SLC2A11-LLPH TCGA-DQ-5624-01 ALG10B 12 38318458 IGFBP6 12 53102045 in-frame 10 36 SOMATIC GRCh37 ALG10B-IGFBP6 TCGA-DQ-5624-01 ALG10 12 34024159 IGFBP6 12 53102045 in-frame 1000 1000 SOMATIC GRCh37 ALG10-IGFBP6 TCGA-DQ-5629-01 TMEM11 17 21214091 UBAP1 9 34220908 frameshift 2 27 SOMATIC GRCh37 TMEM11-UBAP1 TCGA-DQ-5629-01 PPP1R37 19 45093527 ZNF225 19 44115760 2 6 SOMATIC GRCh37 PPP1R37-ZNF225 TCGA-DQ-5630-01 DCLRE1C 10 14949036 OR7E26P 10 15000006 8 32 SOMATIC GRCh37 DCLRE1C-OR7E26P TCGA-DQ-5630-01 SWAP70 11 9694286 WEE1 11 9581532 frameshift 2 10 SOMATIC GRCh37 SWAP70-WEE1 TCGA-DQ-5630-01 STN1 10 103882645 SH3PXD2A 10 103801362 1000 1000 SOMATIC GRCh37 STN1-SH3PXD2A TCGA-DQ-5631-01 VSTM2L 20 37933589 RPRD1B 20 38089726 in-frame 4 24 SOMATIC GRCh37 VSTM2L-RPRD1B TCGA-DQ-7588-01 FAT1 4 186633684 CFAP97 4 185164179 in-frame 15 653 SOMATIC GRCh37 FAT1-CFAP97 TCGA-DQ-7589-01 MED24 17 40026156 PPP1R1B 17 39635607 frameshift 9 163 SOMATIC GRCh37 MED24-PPP1R1B TCGA-DQ-7589-01 DHX8 17 43484185 KRTAP4-1 17 41185321 4 40 SOMATIC GRCh37 DHX8-KRTAP4-1 TCGA-DQ-7589-01 CCND1 11 69643991 FGF4 11 69774127 in-frame 4 11 SOMATIC GRCh37 CCND1-FGF4 TCGA-DQ-7589-01 HAUS6 9 19094317 PMPCA 9 136412490 frameshift 5 7 SOMATIC GRCh37 HAUS6-PMPCA TCGA-DQ-7589-01 ZDHHC21 9 14690337 ELAVL2 9 23731125 2 16 SOMATIC GRCh37 ZDHHC21-ELAVL2 TCGA-DQ-7589-01 CDK14 7 90604249 ORC5 7 104204234 in-frame 2 14 SOMATIC GRCh37 CDK14-ORC5 TCGA-DQ-7589-01 ATXN1 6 16522627 ZNF788 19 12135775 4 5 SOMATIC GRCh37 ATXN1-ZNF788 TCGA-DQ-7589-01 HACD3 15 65530718 RAB11A 15 65850864 3 4 SOMATIC GRCh37 HACD3-RAB11A TCGA-DQ-7589-01 SNX30 9 112751157 CNTLN 9 17484295 in-frame 1 12 SOMATIC GRCh37 SNX30-CNTLN TCGA-DQ-7589-01 PARG 10 49908455 FAM21EP 10 50021467 1 9 SOMATIC GRCh37 PARG-FAM21EP TCGA-DQ-7589-01 TAF1A 1 222584128 SLC12A7 5 1085473 in-frame 1 3 SOMATIC GRCh37 TAF1A-SLC12A7 TCGA-DQ-7589-01 BCAS3 17 61078529 TLK2 17 62596585 in-frame 1 2 SOMATIC GRCh37 BCAS3-TLK2 TCGA-DQ-7590-01 PITX1 5 135033713 P4HA2 5 132218644 frameshift 10 27 SOMATIC GRCh37 PITX1-P4HA2 TCGA-DQ-7590-01 MKRN1 7 140459007 BRAF 7 140781693 in-frame 1 3 SOMATIC GRCh37 MKRN1-BRAF TCGA-DQ-7591-01 KPNA6 1 32108134 RHCE 1 25370540 in-frame 54 74 SOMATIC GRCh37 KPNA6-RHCE TCGA-DQ-7591-01 WDTC1 1 27234951 TMEM39B 1 32074951 6 52 SOMATIC GRCh37 WDTC1-TMEM39B TCGA-DQ-7591-01 MAD1L1 7 2149152 SERGEF 11 17788413 frameshift 9 23 SOMATIC GRCh37 MAD1L1-SERGEF TCGA-DQ-7591-01 PARD6G 18 80202710 CHST1 11 45652606 2 22 SOMATIC GRCh37 PARD6G-CHST1 TCGA-DQ-7591-01 KIF3B 20 32316874 NINL 20 25526598 4 7 SOMATIC GRCh37 KIF3B-NINL TCGA-DQ-7591-01 CS 12 56291631 MUCL1 12 54858193 3 6 SOMATIC GRCh37 CS-MUCL1 TCGA-DQ-7591-01 GINS1 20 25407895 DEFB123 20 31450029 frameshift 1 14 SOMATIC GRCh37 GINS1-DEFB123 TCGA-DQ-7591-01 DNAJC8 1 28232921 KDF1 1 26952412 1 8 SOMATIC GRCh37 DNAJC8-KDF1 TCGA-DQ-7591-01 NAV1 1 201649425 HN1L 16 1691843 in-frame 1 7 SOMATIC GRCh37 NAV1-HN1L TCGA-DQ-7591-01 PHB2 12 6970196 RBP5 12 7124730 frameshift 2 3 SOMATIC GRCh37 PHB2-RBP5 TCGA-DQ-7591-01 TASP1 20 13528446 AHCY 20 34295585 frameshift 1 7 SOMATIC GRCh37 TASP1-AHCY TCGA-DQ-7591-01 SNRNP40 1 31289254 EPB41 1 29039254 frameshift 1 3 SOMATIC GRCh37 SNRNP40-EPB41 TCGA-DQ-7592-01 DHTKD1 10 12069187 CDC123 10 12230948 in-frame 13 65 SOMATIC GRCh37 DHTKD1-CDC123 TCGA-DQ-7592-01 FRS2 12 69470530 LEMD3 12 65210926 2 25 SOMATIC GRCh37 FRS2-LEMD3 TCGA-DQ-7592-01 SMO 7 129209397 STRIP2 7 129464612 in-frame 1 2 SOMATIC GRCh37 SMO-STRIP2 TCGA-DQ-7593-01 WDR11 10 120905416 PDLIM1 10 95271784 in-frame 4 22 SOMATIC GRCh37 WDR11-PDLIM1 TCGA-DQ-7594-01 ACACA 17 37406262 CCDC192 5 127797103 frameshift 11 45 SOMATIC GRCh37 ACACA-CCDC192 TCGA-DQ-7594-01 NFE2L2 2 177264532 RFTN2 2 197572280 in-frame 8 39 SOMATIC GRCh37 NFE2L2-RFTN2 TCGA-DQ-7594-01 AGPS 2 177513908 MOB4 2 197540111 in-frame 4 4 SOMATIC GRCh37 AGPS-MOB4 TCGA-DQ-7594-01 METTL8 2 171392043 RFTN2 2 197572280 frameshift 1 13 SOMATIC GRCh37 METTL8-RFTN2 TCGA-F7-7848-01 MRPL21 11 68892890 SHANK2 11 70473439 in-frame 43 166 SOMATIC GRCh37 MRPL21-SHANK2 TCGA-F7-7848-01 RPS6KB2 11 67429240 PCNX3 11 65617940 frameshift 11 99 SOMATIC GRCh37 RPS6KB2-PCNX3 TCGA-F7-7848-01 C11orf80 11 66759096 TSGA10IP 11 65945715 frameshift 4 20 SOMATIC GRCh37 C11orf80-TSGA10IP TCGA-F7-7848-01 DYNLL1 12 120470104 COQ5 12 120510123 1 7 SOMATIC GRCh37 DYNLL1-COQ5 TCGA-F7-8298-01 METTL16 17 2473524 DHX8 17 43489449 in-frame 8 7 SOMATIC GRCh37 METTL16-DHX8 TCGA-F7-8298-01 HELZ 17 67239433 WIPF2 17 40256391 2 21 SOMATIC GRCh37 HELZ-WIPF2 TCGA-F7-8489-01 CASP1 11 105033064 TTC6 14 37802094 3 23 SOMATIC GRCh37 CASP1-TTC6 TCGA-F7-8489-01 ZFHX3 16 72889731 PMFBP1 16 72120089 frameshift 1 2 SOMATIC GRCh37 ZFHX3-PMFBP1 TCGA-F7-A50G-01 AEBP2 12 19493986 GYS2 12 21546470 frameshift 24 93 SOMATIC GRCh37 AEBP2-GYS2 TCGA-F7-A50I-01 CLSTN1 1 9773272 PIK3CD-AS2 1 9672719 4 66 SOMATIC GRCh37 CLSTN1-PIK3CD-AS2 TCGA-F7-A50I-01 CCDC47 17 63760914 USP37 2 218553724 in-frame 1 8 SOMATIC GRCh37 CCDC47-USP37 TCGA-F7-A50I-01 UTP6 17 31887236 BCAS3 17 61034666 frameshift 2 3 SOMATIC GRCh37 UTP6-BCAS3 TCGA-F7-A61V-01 KXD1 19 18565021 CRLF1 19 18573007 1 12 SOMATIC GRCh37 KXD1-CRLF1 TCGA-F7-A61W-01 C10orf76 10 102056085 LDB1 10 102111536 2 13 SOMATIC GRCh37 C10orf76-LDB1 TCGA-F7-A61W-01 AKR1A1 1 45561878 AGO3 1 36004341 frameshift 3 6 SOMATIC GRCh37 AKR1A1-AGO3 TCGA-F7-A620-01 F3 1 94541537 C11orf80 11 66816053 in-frame 1 1 SOMATIC GRCh37 F3-C11orf80 TCGA-F7-A623-01 PPIG 2 169614681 SSB 2 169805474 in-frame 5 27 SOMATIC GRCh37 PPIG-SSB TCGA-F7-A623-01 SMAP1 6 70798737 KHDC1 6 73292040 frameshift 5 11 SOMATIC GRCh37 SMAP1-KHDC1 TCGA-F7-A623-01 FUT10 8 33473064 RNF122 8 33558771 5 8 SOMATIC GRCh37 FUT10-RNF122 TCGA-F7-A623-01 BECN1 17 42813948 GPATCH8 17 44438715 4 7 SOMATIC GRCh37 BECN1-GPATCH8 TCGA-F7-A623-01 KIF13B 8 29099133 SLC25A21 14 36875004 in-frame 1 14 SOMATIC GRCh37 KIF13B-SLC25A21 TCGA-F7-A623-01 TANC2 17 63099357 CEP112 17 65961598 frameshift 2 8 SOMATIC GRCh37 TANC2-CEP112 TCGA-F7-A623-01 VTI1A 10 112464657 ACSL5 10 112394918 frameshift 1 9 SOMATIC GRCh37 VTI1A-ACSL5 TCGA-H7-A6C4-01 UBAC2 13 99244624 CLYBL 13 99772824 in-frame 1 18 SOMATIC GRCh37 UBAC2-CLYBL TCGA-H7-A6C4-01 WWC2 4 183099622 CCDC110 4 185471049 frameshift 2 7 SOMATIC GRCh37 WWC2-CCDC110 TCGA-H7-A76A-01 DENND1A 9 123609436 NDUFA8 9 122152408 in-frame 4 17 SOMATIC GRCh37 DENND1A-NDUFA8 TCGA-HD-7229-01 CHRM3 1 239827378 FMN2 1 240472372 4 16 SOMATIC GRCh37 CHRM3-FMN2 TCGA-HD-7229-01 PHF21A 11 46076754 MIR670HG 11 43569767 4 6 SOMATIC GRCh37 PHF21A-MIR670HG TCGA-HD-7229-01 JAK2 9 5029906 GLDC 9 6565429 in-frame 1 2 SOMATIC GRCh37 JAK2-GLDC TCGA-HD-7753-01 NSD2 4 1871542 PIBF1 13 72965274 65 239 SOMATIC GRCh37 NSD2-PIBF1 TCGA-HD-7753-01 PARD6G 18 80247277 RFTN2 2 197572280 in-frame 17 102 SOMATIC GRCh37 PARD6G-RFTN2 TCGA-HD-7753-01 LAMC2 1 183231103 WASHC3 12 102046119 in-frame 11 46 SOMATIC GRCh37 LAMC2-WASHC3 TCGA-HD-7753-01 FILIP1L 3 99876072 IMPG2 3 101269573 8 16 SOMATIC GRCh37 FILIP1L-IMPG2 TCGA-HD-7753-01 VRK1 14 96860735 SAMD4A 14 54702062 frameshift 1 3 SOMATIC GRCh37 VRK1-SAMD4A TCGA-HD-7831-01 IGKV1OR2-6 2 97355327 IGKC 2 88857683 3 49 SOMATIC GRCh37 IGKV1OR2-6-IGKC TCGA-HD-7831-01 FAM49B 8 129850835 CCDC26 8 129399684 3 17 SOMATIC GRCh37 FAM49B-CCDC26 TCGA-HD-7831-01 COL6A2 21 46122158 MYH9 22 36299042 in-frame 1 7 SOMATIC GRCh37 COL6A2-MYH9 TCGA-HD-7832-01 SEC24A 5 134692657 PCBD2 5 134959040 in-frame 1 3 SOMATIC GRCh37 SEC24A-PCBD2 TCGA-HD-8224-01 NSD2 4 1901251 PHTF2 7 77893608 in-frame 7 49 SOMATIC GRCh37 NSD2-PHTF2 TCGA-HD-8224-01 C15orf41 15 36579961 RYR3 15 33722715 frameshift 1 4 SOMATIC GRCh37 C15orf41-RYR3 TCGA-HD-8314-01 NIPAL3 1 24453504 GRHL3 1 24364185 frameshift 31 64 SOMATIC GRCh37 NIPAL3-GRHL3 TCGA-HD-8314-01 BPIFB2 20 33020587 MUC5B 11 1260626 frameshift 1 3 SOMATIC GRCh37 BPIFB2-MUC5B TCGA-HD-A634-01 GPD2 2 156476207 NR4A2 2 156326000 frameshift 23 161 SOMATIC GRCh37 GPD2-NR4A2 TCGA-HD-A634-01 NR4A2 2 156330668 GPD2 2 156476098 4 30 SOMATIC GRCh37 NR4A2-GPD2 TCGA-HD-A6HZ-01 PLPP1 5 55534572 SPEF2 5 35806707 frameshift 8 25 SOMATIC GRCh37 PLPP1-SPEF2 TCGA-HD-A6HZ-01 ACTR3 2 113955706 SLC4A10 2 161620915 5 15 SOMATIC GRCh37 ACTR3-SLC4A10 TCGA-HD-A6HZ-01 PTPRF 1 43623403 LRP12 8 104509074 4 10 SOMATIC GRCh37 PTPRF-LRP12 TCGA-HD-A6HZ-01 GPR161 1 168136257 MPC2 1 167920631 frameshift 1 5 SOMATIC GRCh37 GPR161-MPC2 TCGA-HD-A6HZ-01 CACNA2D1 7 81982567 CDK14 7 91045897 frameshift 1 2 SOMATIC GRCh37 CACNA2D1-CDK14 TCGA-HD-A6I0-01 ARHGEF37 5 149581624 MIR205HG 1 209429181 1 1 SOMATIC GRCh37 ARHGEF37-MIR205HG TCGA-HL-7533-01 TBL1X X 9501849 GPR143 X 9743673 15 69 SOMATIC GRCh37 TBL1X-GPR143 TCGA-HL-7533-01 NF1 17 31169997 RNF135 17 30997242 in-frame 7 24 SOMATIC GRCh37 NF1-RNF135 TCGA-HL-7533-01 IQGAP1 15 90390873 SPPL2A 15 50707874 frameshift 8 7 SOMATIC GRCh37 IQGAP1-SPPL2A TCGA-IQ-7630-01 PSAP 10 71851182 ASCC1 10 72213331 1 12 SOMATIC GRCh37 PSAP-ASCC1 TCGA-IQ-7631-01 LRP5 11 68312805 ZNF317 19 9155925 2 11 SOMATIC GRCh37 LRP5-ZNF317 TCGA-IQ-7632-01 PWP2 21 44124727 TRAPPC10 21 44074324 in-frame 3 5 SOMATIC GRCh37 PWP2-TRAPPC10 TCGA-IQ-A61G-01 ASNSD1 2 189661610 PMS1 2 189843964 in-frame 6 32 SOMATIC GRCh37 ASNSD1-PMS1 TCGA-IQ-A61G-01 EML3 11 62605113 INTS5 11 62649999 in-frame 2 6 SOMATIC GRCh37 EML3-INTS5 TCGA-IQ-A61H-01 GRHL2 8 101492789 CRMP1 4 5828668 frameshift 74 210 SOMATIC GRCh37 GRHL2-CRMP1 TCGA-IQ-A61H-01 GRHL2 8 101649499 SPAG1 8 100162279 1 17 SOMATIC GRCh37 GRHL2-SPAG1 TCGA-IQ-A61H-01 FCHSD2 11 73083695 STARD10 11 72793924 3 5 SOMATIC GRCh37 FCHSD2-STARD10 TCGA-IQ-A61H-01 ATP6V1C1 8 103042407 VPS13B 8 99556450 in-frame 1 3 SOMATIC GRCh37 ATP6V1C1-VPS13B TCGA-IQ-A61I-01 CXCL1 4 73869989 AFP 4 73453765 in-frame 2 14 SOMATIC GRCh37 CXCL1-AFP TCGA-IQ-A61I-01 FANCC 9 95135346 ACOT11 1 54584655 in-frame 1 8 SOMATIC GRCh37 FANCC-ACOT11 TCGA-KU-A66T-01 KDM5C X 53216074 HUWE1 X 53680186 44 200 SOMATIC GRCh37 KDM5C-HUWE1 TCGA-KU-A66T-01 NSD3 8 38304587 TCEA1 8 53970463 frameshift 22 223 SOMATIC GRCh37 NSD3-TCEA1 TCGA-KU-A66T-01 MYO1B 2 191245626 NCKAP1 2 182964808 5 17 SOMATIC GRCh37 MYO1B-NCKAP1 TCGA-KU-A66T-01 CHM X 85873052 KCNIP4 4 20850667 frameshift 1 4 SOMATIC GRCh37 CHM-KCNIP4 TCGA-KU-A66T-01 FAM171B 2 186694411 ZNF75D X 135252011 1 2 SOMATIC GRCh37 FAM171B-ZNF75D TCGA-KU-A6H7-01 CPSF6 12 69262562 COL16A1 1 31652853 frameshift 70 296 SOMATIC GRCh37 CPSF6-COL16A1 TCGA-KU-A6H7-01 COL16A1 1 31653599 CPSF6 12 69269512 frameshift 20 120 SOMATIC GRCh37 COL16A1-CPSF6 TCGA-KU-A6H7-01 HSPA8 11 123060593 VSTM5 11 93821323 frameshift 1 28 SOMATIC GRCh37 HSPA8-VSTM5 TCGA-MT-A51X-01 UNC13B 9 35231219 UBE2R2 9 33886881 frameshift 7 31 SOMATIC GRCh37 UNC13B-UBE2R2 TCGA-MT-A51X-01 GTF2IRD1 7 74454176 SEM1 7 96637306 4 5 SOMATIC GRCh37 GTF2IRD1-SEM1 TCGA-MT-A67A-01 CCAR2 8 22608065 PPP3CC 8 22540615 frameshift 2 2 SOMATIC GRCh37 CCAR2-PPP3CC TCGA-MT-A67F-01 RBM17 10 6106238 PRKACB 1 84179177 in-frame 9 48 SOMATIC GRCh37 RBM17-PRKACB TCGA-MT-A7BN-01 NT5DC1 6 116115770 SEC63 6 107883146 in-frame 5 20 SOMATIC GRCh37 NT5DC1-SEC63 TCGA-MT-A7BN-01 PREP 6 105281746 PTPRK 6 128322310 frameshift 1 9 SOMATIC GRCh37 PREP-PTPRK TCGA-MT-A7BN-01 BPGM 7 134646937 AKR1B15 7 134568158 1 2 SOMATIC GRCh37 BPGM-AKR1B15 TCGA-MT-A7BN-01 ZNF529 19 36572333 FAM187B 19 35225212 in-frame 1 2 SOMATIC GRCh37 ZNF529-FAM187B TCGA-MZ-A5BI-01 ZFPM2 8 105634357 ANXA13 8 123681359 frameshift 28 69 SOMATIC GRCh37 ZFPM2-ANXA13 TCGA-MZ-A5BI-01 NFE2L3 7 26183784 TPST1 7 66352505 in-frame 3 25 SOMATIC GRCh37 NFE2L3-TPST1 TCGA-MZ-A5BI-01 UBR5 8 102257632 TRAF3 14 102886189 in-frame 3 5 SOMATIC GRCh37 UBR5-TRAF3 TCGA-MZ-A5BI-01 SUZ12 17 31988497 LRRC37B 17 32053266 frameshift 1000 1000 SOMATIC GRCh37 SUZ12-LRRC37B TCGA-MZ-A6I9-01 HSD17B12 11 43840064 RPS6KB1 17 59910562 in-frame 1 2 SOMATIC GRCh37 HSD17B12-RPS6KB1 TCGA-MZ-A7D7-01 TOP1 20 41029455 CA10 17 51747818 frameshift 12 11 SOMATIC GRCh37 TOP1-CA10 TCGA-MZ-A7D7-01 JARID2 6 15452175 HFE 6 26091314 in-frame 1 11 SOMATIC GRCh37 JARID2-HFE TCGA-MZ-A7D7-01 UVRAG 11 75912039 DPP3 11 66492716 frameshift 1 3 SOMATIC GRCh37 UVRAG-DPP3 TCGA-P3-A5Q6-01 NELL2 12 44607169 MUC19 12 40397879 2 5 SOMATIC GRCh37 NELL2-MUC19 TCGA-P3-A5Q6-01 KMT2A 11 118436944 ATP5L 11 118431024 in-frame 1 1 SOMATIC GRCh37 KMT2A-ATP5L TCGA-P3-A5QA-01 MYH9 22 36282713 RBFOX2 22 35746561 in-frame 30 48 SOMATIC GRCh37 MYH9-RBFOX2 TCGA-P3-A5QA-01 FAM160A1 4 151482648 MYO18B 22 25868320 1 6 SOMATIC GRCh37 FAM160A1-MYO18B TCGA-P3-A5QE-01 SPAG7 17 4967720 DNAH17 17 78475833 frameshift 1 17 SOMATIC GRCh37 SPAG7-DNAH17 TCGA-P3-A5QF-01 CPSF1 8 144399588 VPS28 8 144423922 in-frame 8 20 SOMATIC GRCh37 CPSF1-VPS28 TCGA-P3-A6SW-01 ZBTB49 4 4290353 IGKJ5 2 88860603 13 0 SOMATIC GRCh37 ZBTB49-IGKJ5 TCGA-P3-A6SW-01 MIDN 19 1255694 HMGB2P1 19 1203272 3 4 SOMATIC GRCh37 MIDN-HMGB2P1 TCGA-P3-A6SX-01 RPS10 6 34424669 ITPR3 6 33655766 in-frame 2 10 SOMATIC GRCh37 RPS10-ITPR3 TCGA-P3-A6SX-01 SAMD9 7 93114795 VPS50 7 93239866 2 6 SOMATIC GRCh37 SAMD9-VPS50 TCGA-P3-A6T0-01 UBE2L3 22 21611043 BID 22 17739488 in-frame 1 11 SOMATIC GRCh37 UBE2L3-BID TCGA-P3-A6T3-01 NRP2 2 205697721 PARD3B 2 205615456 in-frame 2 7 SOMATIC GRCh37 NRP2-PARD3B TCGA-P3-A6T5-01 PRSS23 11 86823593 LGALS12 11 63510463 frameshift 7 26 SOMATIC GRCh37 PRSS23-LGALS12 TCGA-P3-A6T5-01 APLP2 11 130070082 SLC22A10 11 63362380 4 2 SOMATIC GRCh37 APLP2-SLC22A10 TCGA-P3-A6T7-01 CRYBG3 3 97900485 MYBPC1 12 101614496 frameshift 4 4 SOMATIC GRCh37 CRYBG3-MYBPC1 TCGA-P3-A6T7-01 P4HB 17 81859181 CENPX 17 82019219 in-frame 1 4 SOMATIC GRCh37 P4HB-CENPX TCGA-P3-A6T7-01 RGMA 15 93072916 GLYATL1P3 11 59093934 in-frame 1 2 SOMATIC GRCh37 RGMA-GLYATL1P3 TCGA-P3-A6T8-01 TMPRSS2 21 41471806 HSF2BP 21 43529962 in-frame 22 47 SOMATIC GRCh37 TMPRSS2-HSF2BP TCGA-P3-A6T8-01 SLC35G2 3 136819214 IL20RB 3 136980466 8 43 SOMATIC GRCh37 SLC35G2-IL20RB TCGA-P3-A6T8-01 EIF3A 10 119049801 TBC1D1 4 38089932 frameshift 7 6 SOMATIC GRCh37 EIF3A-TBC1D1 TCGA-P3-A6T8-01 AGO1 1 35902337 SLC25A3P1 1 53415524 3 8 SOMATIC GRCh37 AGO1-SLC25A3P1 TCGA-P3-A6T8-01 WNK1 12 754324 KDM4B 19 5016257 1 7 SOMATIC GRCh37 WNK1-KDM4B TCGA-QK-A64Z-01 TRA2B 3 185937825 HRH4 18 24468788 frameshift 6 27 SOMATIC GRCh37 TRA2B-HRH4 TCGA-QK-A64Z-01 TMEM241 18 23384990 RIOK3 18 23466133 in-frame 5 12 SOMATIC GRCh37 TMEM241-RIOK3 TCGA-QK-A64Z-01 YEATS2 3 183762279 HTR3C 3 184055312 in-frame 5 8 SOMATIC GRCh37 YEATS2-HTR3C TCGA-QK-A652-01 LENG1 19 54158282 NIT2 3 100341073 frameshift 8 25 SOMATIC GRCh37 LENG1-NIT2 TCGA-QK-A6IG-01 STK39 2 168247228 PARVA 11 12473745 in-frame 2 5 SOMATIC GRCh37 STK39-PARVA TCGA-QK-A6IG-01 PRR12 19 49601918 SNRNP70 19 49101390 in-frame 1 3 SOMATIC GRCh37 PRR12-SNRNP70 TCGA-QK-A6IH-01 DENND5B 12 31495810 TSPAN9 12 3083653 1 1 SOMATIC GRCh37 DENND5B-TSPAN9 TCGA-QK-A6IJ-01 RALY 20 33994131 PXMP4 20 33714736 9 21 SOMATIC GRCh37 RALY-PXMP4 TCGA-QK-A6V9-01 PLSCR1 3 146517006 MACROD2 20 16041201 frameshift 7 18 SOMATIC GRCh37 PLSCR1-MACROD2 TCGA-QK-A6VB-01 DDB1 11 61323979 STX3 11 59773211 in-frame 25 79 SOMATIC GRCh37 DDB1-STX3 TCGA-QK-A6VC-01 PBRM1 3 52678500 GLT8D1 3 52700496 10 16 SOMATIC GRCh37 PBRM1-GLT8D1 TCGA-QK-A6VC-01 NFE2L1 17 48056598 COPZ2 17 48033944 in-frame 1 7 SOMATIC GRCh37 NFE2L1-COPZ2 TCGA-QK-A8Z7-01 JUP 17 41758715 NT5C3B 17 41825657 in-frame 5 82 SOMATIC GRCh37 JUP-NT5C3B TCGA-QK-A8Z7-01 NMRAL2P 3 185968717 FBXL6 8 144357121 4 17 SOMATIC GRCh37 NMRAL2P-FBXL6 TCGA-QK-A8Z7-01 FOXA3 19 45864525 RGS6 14 72454528 frameshift 4 5 SOMATIC GRCh37 FOXA3-RGS6 TCGA-QK-A8Z8-01 TMEM165 4 55424643 KIAA1211 4 56272321 19 45 SOMATIC GRCh37 TMEM165-KIAA1211 TCGA-QK-A8Z8-01 RAB28 4 13460699 STAP1 4 67590884 frameshift 1 9 SOMATIC GRCh37 RAB28-STAP1 TCGA-QK-A8Z9-01 SP140L 2 230392229 PDE6D 2 231739202 10 33 SOMATIC GRCh37 SP140L-PDE6D TCGA-QK-A8Z9-01 AMOTL1 11 94729055 CEP295 11 93721312 in-frame 6 27 SOMATIC GRCh37 AMOTL1-CEP295 TCGA-QK-A8Z9-01 HADHA 2 26230192 PRKAR1B 7 596304 frameshift 2 1 SOMATIC GRCh37 HADHA-PRKAR1B TCGA-QK-A8Z9-01 TENM3 4 182449083 NR3C2 4 148194862 in-frame 1 2 SOMATIC GRCh37 TENM3-NR3C2 TCGA-QK-A8ZA-01 ESYT2 7 158797942 ZNF595 4 59430 in-frame 9 23 SOMATIC GRCh37 ESYT2-ZNF595 TCGA-QK-A8ZA-01 ATP11A 13 112690455 NAXD 13 110622216 frameshift 8 18 SOMATIC GRCh37 ATP11A-NAXD TCGA-QK-A8ZA-01 PRRC2B 9 131394263 UHRF2 9 6504593 4 12 SOMATIC GRCh37 PRRC2B-UHRF2 TCGA-QK-A8ZA-01 BTBD9 6 38577600 PLEKHB1 11 73660753 in-frame 1 9 SOMATIC GRCh37 BTBD9-PLEKHB1 TCGA-QK-A8ZA-01 ZCCHC14 16 87460008 C16orf95 16 87141103 1 5 SOMATIC GRCh37 ZCCHC14-C16orf95 TCGA-QK-A8ZB-01 HEBP1 12 12987152 NCK1 3 136948259 frameshift 35 189 SOMATIC GRCh37 HEBP1-NCK1 TCGA-QK-A8ZB-01 NCK1 3 136946295 HEBP1 12 12975479 frameshift 44 96 SOMATIC GRCh37 NCK1-HEBP1 TCGA-QK-A8ZB-01 IL20RB 3 136946295 HEBP1 12 12975479 44 54 SOMATIC GRCh37 IL20RB-HEBP1 TCGA-QK-A8ZB-01 PDIA6 2 10812678 DKK3 11 11968487 frameshift 23 48 SOMATIC GRCh37 PDIA6-DKK3 TCGA-QK-A8ZB-01 BRWD3 X 80791854 NALF1 13 107170786 in-frame 6 39 SOMATIC GRCh37 BRWD3-NALF1 TCGA-QK-A8ZB-01 MAP4K3 2 39378066 EML4 2 42280850 in-frame 2 4 SOMATIC GRCh37 MAP4K3-EML4 TCGA-QK-A8ZB-01 LPIN1 2 11820514 TIMM17A 1 201957511 frameshift 1 4 SOMATIC GRCh37 LPIN1-TIMM17A TCGA-RS-A6TO-01 NEAT1 11 65424014 CNIH2 11 66283035 85 152 SOMATIC GRCh37 NEAT1-CNIH2 TCGA-RS-A6TO-01 NEAT1_3 11 65424014 CNIH2 11 66283035 85 98 SOMATIC GRCh37 NEAT1_3-CNIH2 TCGA-RS-A6TO-01 IPPK 9 92669908 IARS 9 92256800 in-frame 2 19 SOMATIC GRCh37 IPPK-IARS TCGA-RS-A6TO-01 LRFN3 19 35935782 GMFG 19 39333126 2 2 SOMATIC GRCh37 LRFN3-GMFG TCGA-RS-A6TO-01 GLS 2 190902026 MYO1B 2 191276887 1 5 SOMATIC GRCh37 GLS-MYO1B TCGA-RS-A6TO-01 MYO9B 19 17102557 SPC24 19 11146430 in-frame 1 2 SOMATIC GRCh37 MYO9B-SPC24 TCGA-RS-A6TP-01 RCBTB2 13 48510629 EPSTI1 13 42926429 in-frame 17 58 SOMATIC GRCh37 RCBTB2-EPSTI1 TCGA-RS-A6TP-01 MAP2K4 17 12021001 PSMD12 17 67357578 in-frame 8 15 SOMATIC GRCh37 MAP2K4-PSMD12 TCGA-RS-A6TP-01 TRPC4AP 20 35078046 SOGA1 20 36804902 in-frame 6 15 SOMATIC GRCh37 TRPC4AP-SOGA1 TCGA-RS-A6TP-01 KIF3B 20 32316874 PXMP4 20 33714736 in-frame 3 2 SOMATIC GRCh37 KIF3B-PXMP4 TCGA-RS-A6TP-01 NINL 20 25489244 TTLL9 20 31937396 in-frame 1 8 SOMATIC GRCh37 NINL-TTLL9 TCGA-T2-A6WZ-01 USP9X X 41219231 BLVRB 19 40458545 in-frame 21 106 SOMATIC GRCh37 USP9X-BLVRB TCGA-T2-A6WZ-01 MACROD1 11 64151239 BAD 11 64284376 5 15 SOMATIC GRCh37 MACROD1-BAD TCGA-T2-A6X0-01 CCDC88C 14 91305765 RASGEF1B 4 81915358 in-frame 19 97 SOMATIC GRCh37 CCDC88C-RASGEF1B TCGA-T2-A6X0-01 BCL2L13 22 17655832 CUX2 12 111334441 in-frame 6 17 SOMATIC GRCh37 BCL2L13-CUX2 TCGA-T2-A6X0-01 DAPP1 4 99863072 COL4A3 2 227311786 frameshift 4 7 SOMATIC GRCh37 DAPP1-COL4A3 TCGA-T2-A6X0-01 COPS8 2 237099038 RIN3 14 92684987 4 1 SOMATIC GRCh37 COPS8-RIN3 TCGA-T2-A6X0-01 UFSP2 4 185425866 EPHA4 2 221501172 frameshift 3 5 SOMATIC GRCh37 UFSP2-EPHA4 TCGA-T2-A6X0-01 PEX14 1 10623116 CASZ1 1 10796650 1000 1000 SOMATIC GRCh37 PEX14-CASZ1 TCGA-T3-A92M-01 ZMAT5 22 29766872 NIPSNAP1 22 29561862 5 11 SOMATIC GRCh37 ZMAT5-NIPSNAP1 TCGA-T3-A92M-01 FHOD3 18 36298000 MOCOS 18 36256968 frameshift 4 8 SOMATIC GRCh37 FHOD3-MOCOS TCGA-T3-A92M-01 OSBPL1A 18 24239220 MYO16 13 109120370 frameshift 3 12 SOMATIC GRCh37 OSBPL1A-MYO16 TCGA-T3-A92M-01 CCDC142 2 74481223 M1AP 2 74581847 in-frame 2 5 SOMATIC GRCh37 CCDC142-M1AP TCGA-T3-A92M-01 NCS1 9 130223159 TOR1B 9 129804073 frameshift 2 4 SOMATIC GRCh37 NCS1-TOR1B TCGA-T3-A92N-01 BCL2L13 22 17696210 VPS8 3 184898565 in-frame 4 11 SOMATIC GRCh37 BCL2L13-VPS8 TCGA-TN-A7HJ-01 B4GALT1 9 33120419 HSPC324 9 136649065 7 16 SOMATIC GRCh37 B4GALT1-HSPC324 TCGA-TN-A7HJ-01 GNRHR2 1 145919900 S100A13 1 153619038 4 11 SOMATIC GRCh37 GNRHR2-S100A13 TCGA-TN-A7HJ-01 DNAAF5 7 770618 SMYD3 1 245929937 frameshift 2 1 SOMATIC GRCh37 DNAAF5-SMYD3 TCGA-TN-A7HJ-01 SENP5 3 196930900 KCNMB3 3 179244693 frameshift 1 5 SOMATIC GRCh37 SENP5-KCNMB3 TCGA-UF-A719-01 TULP4 6 158498812 FNDC1 6 159214945 in-frame 8 29 SOMATIC GRCh37 TULP4-FNDC1 TCGA-UF-A71A-01 RABEP1 17 5332152 RNF167 17 4940487 6 28 SOMATIC GRCh37 RABEP1-RNF167 TCGA-UF-A71A-01 TTK 6 80014586 BCKDHB 6 80200934 in-frame 8 16 SOMATIC GRCh37 TTK-BCKDHB TCGA-UF-A71B-01 TMEM241 18 23309680 PACS1 11 66193486 in-frame 1 5 SOMATIC GRCh37 TMEM241-PACS1 TCGA-UF-A71E-01 EPC1 10 32305772 QPCT 2 37359580 frameshift 8 10 SOMATIC GRCh37 EPC1-QPCT TCGA-UF-A7J9-01 RASSF8 12 26068923 BMAL2 12 27400534 5 10 SOMATIC GRCh37 RASSF8-BMAL2 TCGA-UF-A7J9-01 ERC1 12 1408247 HEBP1 12 12989415 in-frame 1 17 SOMATIC GRCh37 ERC1-HEBP1 TCGA-UF-A7JA-01 STAG1 3 136398749 SPSB4 3 141147142 frameshift 4 7 SOMATIC GRCh37 STAG1-SPSB4 TCGA-UF-A7JA-01 TRAPPC11 4 183679486 ING2 4 183510282 frameshift 3 3 SOMATIC GRCh37 TRAPPC11-ING2 TCGA-UF-A7JA-01 PRKCD 3 53190001 SLC4A8 12 51489700 in-frame 2 5 SOMATIC GRCh37 PRKCD-SLC4A8 TCGA-UF-A7JD-01 SNHG6 8 66925437 PPP1R42 8 67010831 13 39 SOMATIC GRCh37 SNHG6-PPP1R42 TCGA-UF-A7JD-01 POGZ 1 151423397 SLC6A13 12 243813 in-frame 4 13 SOMATIC GRCh37 POGZ-SLC6A13 TCGA-UF-A7JD-01 SLFN5 17 35243143 CDK5RAP3 17 47973519 3 15 SOMATIC GRCh37 SLFN5-CDK5RAP3 TCGA-UF-A7JD-01 SMIM15 5 61161088 ELOVL7 5 60799230 2 11 SOMATIC GRCh37 SMIM15-ELOVL7 TCGA-UF-A7JH-01 LEMD3 12 65171118 TSPAN8 12 71282819 1 11 SOMATIC GRCh37 LEMD3-TSPAN8 TCGA-UF-A7JJ-01 AEBP2 12 19473355 PIK3C2G 12 18609535 frameshift 6 2 SOMATIC GRCh37 AEBP2-PIK3C2G TCGA-UF-A7JJ-01 PARP4 13 24512706 COL9A1 6 70283820 1 15 SOMATIC GRCh37 PARP4-COL9A1 TCGA-UF-A7JK-01 POMK 8 43103830 ANK1 8 41734069 in-frame 9 26 SOMATIC GRCh37 POMK-ANK1 TCGA-UF-A7JK-01 MAP4 3 47914817 ULK2 17 19777716 frameshift 1 11 SOMATIC GRCh37 MAP4-ULK2 TCGA-UF-A7JV-01 YAP1 11 102162571 SHANK2 11 70502931 frameshift 3 4 SOMATIC GRCh37 YAP1-SHANK2 TCGA-UF-A7JV-01 PACS1 11 66193573 FOLH1 11 49158043 in-frame 2 7 SOMATIC GRCh37 PACS1-FOLH1 TCGA-UF-A7JV-01 UVRAG 11 75815524 RRAS2 11 14295855 in-frame 3 1 SOMATIC GRCh37 UVRAG-RRAS2 TCGA-UF-A7JV-01 CTSC 11 88334937 MMP12 11 102873112 in-frame 1 7 SOMATIC GRCh37 CTSC-MMP12 TCGA-UF-A7JV-01 LAMTOR1 11 72098289 UVRAG 11 75851883 in-frame 1 4 SOMATIC GRCh37 LAMTOR1-UVRAG TCGA-UP-A6WW-01 CYLD 16 50782466 UNGP1 16 51278781 13 17 SOMATIC GRCh37 CYLD-UNGP1 TCGA-UP-A6WW-01 TSPAN5 4 98658146 MAPK10 4 86017375 in-frame 3 20 SOMATIC GRCh37 TSPAN5-MAPK10 TCGA-UP-A6WW-01 C9orf3 9 94956015 CUEDC1 17 57885879 1 5 SOMATIC GRCh37 C9orf3-CUEDC1