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{"/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/__main__.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/__main__.py__", "embedding": null, "metadata": {"file_path": "dvc/__main__.py", "file_name": "__main__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["docstring"], "tokens": 39}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Main entry point for DVC command line tool.\"\"\"\nimport sys\n\nfrom dvc.main import main\n\nif __name__ == \"__main__\":\n    sys.exit(main(sys.argv[1:]))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/base.py_CmdBase_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/base.py_CmdBase_", "embedding": null, "metadata": {"file_path": "dvc/command/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 31, "end_line": 58, "span_ids": ["CmdBaseNoRepo.__init__", "CmdBase", "CmdBase.__init__", "CmdBase.run", "CmdBaseNoRepo"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdBase(ABC):\n    UNINITIALIZED = False\n\n    def __init__(self, args):\n        from dvc.repo import Repo\n        from dvc.updater import Updater\n\n        os.chdir(args.cd)\n\n        self.repo = Repo(uninitialized=self.UNINITIALIZED)\n        self.config = self.repo.config\n        self.args = args\n        if self.repo.tmp_dir:\n            hardlink_lock = self.config[\"core\"].get(\"hardlink_lock\", False)\n            updater = Updater(self.repo.tmp_dir, hardlink_lock=hardlink_lock)\n            updater.check()\n\n    @abstractmethod\n    def run(self):\n        pass\n\n\nclass CmdBaseNoRepo(CmdBase):\n    def __init__(self, args):  # pylint: disable=super-init-not-called\n        self.args = args\n\n        os.chdir(args.cd)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/commit.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/commit.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/commit.py", "file_name": "commit.py", "file_type": "text/x-python", "category": "implementation", "start_line": 34, "end_line": 75, "span_ids": ["add_parser"], "tokens": 271}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    COMMIT_HELP = (\n        \"Record changes to files or directories tracked by DVC\"\n        \" by storing the current versions in the cache.\"\n    )\n\n    commit_parser = subparsers.add_parser(\n        \"commit\",\n        parents=[parent_parser],\n        description=append_doc_link(COMMIT_HELP, \"commit\"),\n        help=COMMIT_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    commit_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Commit even if hash value for dependencies/outputs changed.\",\n    )\n    commit_parser.add_argument(\n        \"-d\",\n        \"--with-deps\",\n        action=\"store_true\",\n        default=False,\n        help=\"Commit all dependencies of the specified target.\",\n    )\n    commit_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Commit cache for subdirectories of the specified directory.\",\n    )\n    commit_parser.add_argument(\n        \"targets\",\n        nargs=\"*\",\n        help=\"DVC-files to commit. Optional. \"\n        \"(Finds all DVC-files in the workspace by default.)\",\n    ).complete = completion.DVC_FILE\n    commit_parser.set_defaults(func=CmdCommit)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/daemon.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/daemon.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/daemon.py", "file_name": "daemon.py", "file_type": "text/x-python", "category": "implementation", "start_line": 36, "end_line": 72, "span_ids": ["add_parser"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    DAEMON_HELP = \"Service daemon.\"\n    daemon_parser = subparsers.add_parser(\n        \"daemon\",\n        parents=[parent_parser],\n        description=DAEMON_HELP,\n        add_help=False,\n    )\n\n    daemon_subparsers = daemon_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc daemon CMD --help` for command-specific \" \"help.\",\n    )\n\n    fix_subparsers(daemon_subparsers)\n\n    DAEMON_UPDATER_HELP = \"Fetch latest available version.\"\n    daemon_updater_parser = daemon_subparsers.add_parser(\n        \"updater\",\n        parents=[parent_parser],\n        description=DAEMON_UPDATER_HELP,\n        help=DAEMON_UPDATER_HELP,\n    )\n    daemon_updater_parser.set_defaults(func=CmdDaemonUpdater)\n\n    DAEMON_ANALYTICS_HELP = \"Send dvc usage analytics.\"\n    daemon_analytics_parser = daemon_subparsers.add_parser(\n        \"analytics\",\n        parents=[parent_parser],\n        description=DAEMON_ANALYTICS_HELP,\n        help=DAEMON_ANALYTICS_HELP,\n    )\n    daemon_analytics_parser.add_argument(\n        \"target\", help=\"Analytics file.\",\n    ).complete = completion.FILE\n    daemon_analytics_parser.set_defaults(func=CmdDaemonAnalytics)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/destroy.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/destroy.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/destroy.py", "file_name": "destroy.py", "file_type": "text/x-python", "category": "implementation", "start_line": 37, "end_line": 55, "span_ids": ["add_parser"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    DESTROY_HELP = \"Remove DVC-files, local DVC config and data cache.\"\n\n    destroy_parser = subparsers.add_parser(\n        \"destroy\",\n        parents=[parent_parser],\n        description=append_doc_link(DESTROY_HELP, \"destroy\"),\n        help=DESTROY_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    destroy_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Force destruction.\",\n    )\n    destroy_parser.set_defaults(func=CmdDestroy)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/gc.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/gc.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/gc.py", "file_name": "gc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 65, "end_line": 154, "span_ids": ["add_parser"], "tokens": 554}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    GC_HELP = \"Garbage collect unused objects from cache or remote storage.\"\n    GC_DESCRIPTION = (\n        \"Removes all files in the cache or a remote which are not in\\n\"\n        \"use by the specified Git revisions (defaults to just HEAD).\"\n    )\n    gc_parser = subparsers.add_parser(\n        \"gc\",\n        parents=[parent_parser],\n        description=append_doc_link(GC_DESCRIPTION, \"gc\"),\n        help=GC_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    gc_parser.add_argument(\n        \"-w\",\n        \"--workspace\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep data files used in the current workspace.\",\n    )\n    gc_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep data files for the tips of all Git branches.\",\n    )\n    gc_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep data files for all Git tags.\",\n    )\n    gc_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep data files for all Git commits.\",\n    )\n    gc_parser.add_argument(\n        \"--all-experiments\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep data files for all experiments.\",\n    )\n    gc_parser.add_argument(\n        \"-c\",\n        \"--cloud\",\n        action=\"store_true\",\n        default=False,\n        help=\"Collect garbage in remote repository.\",\n    )\n    gc_parser.add_argument(\n        \"-r\",\n        \"--remote\",\n        help=\"Remote storage to collect garbage in\",\n        metavar=\"<name>\",\n    )\n    gc_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Force garbage collection - automatically agree to all prompts.\",\n    )\n    gc_parser.add_argument(\n        \"-j\",\n        \"--jobs\",\n        type=int,\n        help=(\n            \"Number of jobs to run simultaneously. \"\n            \"The default value is 4 * cpu_count(). \"\n            \"For SSH remotes, the default is 4. \"\n        ),\n        metavar=\"<number>\",\n    )\n    gc_parser.add_argument(\n        \"-p\",\n        \"--projects\",\n        dest=\"repos\",\n        type=str,\n        nargs=\"*\",\n        help=\"Keep data files required by these projects \"\n        \"in addition to the current one. \"\n        \"Useful if you share a single cache across repos.\",\n        metavar=\"<paths>\",\n    )\n    gc_parser.set_defaults(func=CmdGC)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/imp.py", "file_name": "imp.py", "file_type": "text/x-python", "category": "implementation", "start_line": 34, "end_line": 98, "span_ids": ["add_parser"], "tokens": 415}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    IMPORT_HELP = (\n        \"Download file or directory tracked by DVC or by Git \"\n        \"into the workspace, and track it.\"\n    )\n\n    import_parser = subparsers.add_parser(\n        \"import\",\n        parents=[parent_parser],\n        description=append_doc_link(IMPORT_HELP, \"import\"),\n        help=IMPORT_HELP,\n        formatter_class=argparse.RawTextHelpFormatter,\n    )\n    import_parser.add_argument(\n        \"url\", help=\"Location of DVC or Git repository to download from\"\n    )\n    import_parser.add_argument(\n        \"path\", help=\"Path to a file or directory within the repository\",\n    ).complete = completion.FILE\n    import_parser.add_argument(\n        \"-o\",\n        \"--out\",\n        nargs=\"?\",\n        help=\"Destination path to download files to\",\n        metavar=\"<path>\",\n    ).complete = completion.DIR\n    import_parser.add_argument(\n        \"--rev\",\n        nargs=\"?\",\n        help=\"Git revision (e.g. SHA, branch, tag)\",\n        metavar=\"<commit>\",\n    )\n    import_parser.add_argument(\n        \"--file\",\n        help=\"Specify name of the DVC-file this command will generate.\",\n        metavar=\"<filename>\",\n    )\n    import_parser.add_argument(\n        \"--no-exec\",\n        action=\"store_true\",\n        default=False,\n        help=\"Only create DVC-file without actually downloading it.\",\n    )\n    import_parser.add_argument(\n        \"--desc\",\n        type=str,\n        metavar=\"<text>\",\n        help=(\n            \"User description of the data (optional). \"\n            \"This doesn't affect any DVC operations.\"\n        ),\n    )\n    import_parser.add_argument(\n        \"-j\",\n        \"--jobs\",\n        type=int,\n        help=(\n            \"Number of jobs to run simultaneously. \"\n            \"The default value is 4 * cpu_count(). \"\n            \"For SSH remotes, the default is 4. \"\n        ),\n        metavar=\"<number>\",\n    )\n    import_parser.set_defaults(func=CmdImport)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/repro.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/repro.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/repro.py", "file_name": "repro.py", "file_type": "text/x-python", "category": "implementation", "start_line": 175, "end_line": 188, "span_ids": ["add_parser"], "tokens": 102}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    REPRO_HELP = (\n        \"Reproduce complete or partial pipelines by executing their stages.\"\n    )\n    repro_parser = subparsers.add_parser(\n        \"repro\",\n        parents=[parent_parser],\n        description=append_doc_link(REPRO_HELP, \"repro\"),\n        help=REPRO_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    add_arguments(repro_parser)\n    repro_parser.set_defaults(func=CmdRepro)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/daemon.py__spawn_posix__spawn_posix._pylint_disable_protect": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/daemon.py__spawn_posix__spawn_posix._pylint_disable_protect", "embedding": null, "metadata": {"file_path": "dvc/daemon.py", "file_name": "daemon.py", "file_type": "text/x-python", "category": "implementation", "start_line": 40, "end_line": 76, "span_ids": ["_spawn_posix"], "tokens": 271}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _spawn_posix(cmd, env):\n    from dvc.main import main\n\n    # NOTE: using os._exit instead of sys.exit, because dvc built\n    # with PyInstaller has trouble with SystemExit exception and throws\n    # errors such as \"[26338] Failed to execute script __main__\"\n    try:\n        pid = os.fork()\n        if pid > 0:\n            return\n    except OSError:\n        logger.exception(\"failed at first fork\")\n        os._exit(1)  # pylint: disable=protected-access\n\n    os.setsid()\n\n    try:\n        pid = os.fork()\n        if pid > 0:\n            os._exit(0)  # pylint: disable=protected-access\n    except OSError:\n        logger.exception(\"failed at second fork\")\n        os._exit(1)  # pylint: disable=protected-access\n\n    sys.stdin.close()\n    sys.stdout.close()\n    sys.stderr.close()\n\n    if platform.system() == \"Darwin\":\n        # workaround for MacOS bug\n        # https://github.com/iterative/dvc/issues/4294\n        _popen(cmd, env=env).communicate()\n    else:\n        os.environ.update(env)\n        main(cmd)\n\n    os._exit(0)  # pylint: disable=protected-access", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas.point_AsciiCanvas.point.self_canvas_y_x_char": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas.point_AsciiCanvas.point.self_canvas_y_x_char", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 103, "end_line": 120, "span_ids": ["AsciiCanvas.point"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AsciiCanvas:\n\n    def point(self, x, y, char):\n        \"\"\"Create a point on ASCII canvas.\n\n        Args:\n            x (int): x coordinate. Should be >= 0 and < number of columns in\n                the canvas.\n            y (int): y coordinate. Should be >= 0 an < number of lines in the\n                canvas.\n            char (str): character to place in the specified point on the\n                canvas.\n        \"\"\"\n        assert len(char) == 1\n        assert x >= 0\n        assert x < self.cols\n        assert y >= 0\n        assert y < self.lines\n\n        self.canvas[y][x] = char", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas.line_AsciiCanvas.line.if_dx_0_and_dy_0_.else_.for_y_in_range_y1_y0_1.self_point_x_y_char_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas.line_AsciiCanvas.line.if_dx_0_and_dy_0_.else_.for_y_in_range_y1_y0_1.self_point_x_y_char_", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 122, "end_line": 162, "span_ids": ["AsciiCanvas.line"], "tokens": 394}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AsciiCanvas:\n\n    def line(self, x0, y0, x1, y1, char):\n        \"\"\"Create a line on ASCII canvas.\n\n        Args:\n            x0 (int): x coordinate where the line should start.\n            y0 (int): y coordinate where the line should start.\n            x1 (int): x coordinate where the line should end.\n            y1 (int): y coordinate where the line should end.\n            char (str): character to draw the line with.\n        \"\"\"\n        # pylint: disable=too-many-arguments, too-many-branches\n        if x0 > x1:\n            x1, x0 = x0, x1\n            y1, y0 = y0, y1\n\n        dx = x1 - x0\n        dy = y1 - y0\n\n        if dx == 0 and dy == 0:\n            self.point(x0, y0, char)\n        elif abs(dx) >= abs(dy):\n            for x in range(x0, x1 + 1):\n                if dx == 0:\n                    y = y0\n                else:\n                    y = y0 + int(round((x - x0) * dy / float(dx)))\n                self.point(x, y, char)\n        elif y0 < y1:\n            for y in range(y0, y1 + 1):\n                if dy == 0:\n                    x = x0\n                else:\n                    x = x0 + int(round((y - y0) * dx / float(dy)))\n                self.point(x, y, char)\n        else:\n            for y in range(y1, y0 + 1):\n                if dy == 0:\n                    x = x0\n                else:\n                    x = x1 + int(round((y - y1) * dx / float(dy)))\n                self.point(x, y, char)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas.text_AsciiCanvas.box.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas.text_AsciiCanvas.box.None_3", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 164, "end_line": 201, "span_ids": ["AsciiCanvas.text", "AsciiCanvas.box"], "tokens": 306}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AsciiCanvas:\n\n    def text(self, x, y, text):\n        \"\"\"Print a text on ASCII canvas.\n\n        Args:\n            x (int): x coordinate where the text should start.\n            y (int): y coordinate where the text should start.\n            text (str): string that should be printed.\n        \"\"\"\n        for i, char in enumerate(text):\n            self.point(x + i, y, char)\n\n    def box(self, x0, y0, width, height):\n        \"\"\"Create a box on ASCII canvas.\n\n        Args:\n            x0 (int): x coordinate of the box corner.\n            y0 (int): y coordinate of the box corner.\n            width (int): box width.\n            height (int): box height.\n        \"\"\"\n        assert width > 1\n        assert height > 1\n\n        width -= 1\n        height -= 1\n\n        for x in range(x0, x0 + width):\n            self.point(x, y0, \"-\")\n            self.point(x, y0 + height, \"-\")\n\n        for y in range(y0, y0 + height):\n            self.point(x0, y, \"|\")\n            self.point(x0 + width, y, \"|\")\n\n        self.point(x0, y0, \"+\")\n        self.point(x0 + width, y0, \"+\")\n        self.point(x0, y0 + height, \"+\")\n        self.point(x0 + width, y0 + height, \"+\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py__build_sugiyama_layout__build_sugiyama_layout.return.sug": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py__build_sugiyama_layout__build_sugiyama_layout.return.sug", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 204, "end_line": 242, "span_ids": ["_build_sugiyama_layout"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _build_sugiyama_layout(vertexes, edges):\n    #\n    # Just a reminder about naming conventions:\n    # +------------X\n    # |\n    # |\n    # |\n    # |\n    # Y\n    #\n\n    vertexes = {v: Vertex(f\" {v} \") for v in vertexes}\n    # NOTE: reverting edges to correctly orientate the graph\n    edges = [Edge(vertexes[e], vertexes[s]) for s, e in edges]\n    vertexes = vertexes.values()\n    graph = Graph(vertexes, edges)\n\n    for vertex in vertexes:\n        vertex.view = VertexViewer(vertex.data)\n\n    # NOTE: determine min box length to create the best layout\n    minw = min(v.view.w for v in vertexes)\n\n    for edge in edges:\n        edge.view = EdgeViewer()\n\n    sug = SugiyamaLayout(graph.C[0])\n    graph = graph.C[0]\n    roots = list(filter(lambda x: len(x.e_in()) == 0, graph.sV))\n\n    sug.init_all(roots=roots, optimize=True)\n\n    sug.yspace = VertexViewer.HEIGHT\n    sug.xspace = minw\n    sug.route_edge = route_with_lines\n\n    sug.draw()\n\n    return sug", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_draw_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_draw_", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 245, "end_line": 319, "span_ids": ["draw"], "tokens": 636}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def draw(vertexes, edges):\n    \"\"\"Build a DAG and draw it in ASCII.\n\n    Args:\n        vertexes (list): list of graph vertexes.\n        edges (list): list of graph edges.\n    \"\"\"\n    # pylint: disable=too-many-locals\n    # NOTE: coordinates might me negative, so we need to shift\n    # everything to the positive plane before we actually draw it.\n    Xs = []  # pylint: disable=invalid-name\n    Ys = []  # pylint: disable=invalid-name\n\n    sug = _build_sugiyama_layout(vertexes, edges)\n\n    for vertex in sug.g.sV:\n        # NOTE: moving boxes w/2 to the left\n        Xs.append(vertex.view.xy[0] - vertex.view.w / 2.0)\n        Xs.append(vertex.view.xy[0] + vertex.view.w / 2.0)\n        Ys.append(vertex.view.xy[1])\n        Ys.append(vertex.view.xy[1] + vertex.view.h)\n\n    for edge in sug.g.sE:\n        for x, y in edge.view._pts:  # pylint: disable=protected-access\n            Xs.append(x)\n            Ys.append(y)\n\n    minx = min(Xs)\n    miny = min(Ys)\n    maxx = max(Xs)\n    maxy = max(Ys)\n\n    canvas_cols = int(math.ceil(math.ceil(maxx) - math.floor(minx))) + 1\n    canvas_lines = int(round(maxy - miny))\n\n    canvas = AsciiCanvas(canvas_cols, canvas_lines)\n\n    # NOTE: first draw edges so that node boxes could overwrite them\n    for edge in sug.g.sE:\n        # pylint: disable=protected-access\n        assert len(edge.view._pts) > 1\n        for index in range(1, len(edge.view._pts)):\n            start = edge.view._pts[index - 1]\n            end = edge.view._pts[index]\n\n            start_x = int(round(start[0] - minx))\n            start_y = int(round(start[1] - miny))\n            end_x = int(round(end[0] - minx))\n            end_y = int(round(end[1] - miny))\n\n            assert start_x >= 0\n            assert start_y >= 0\n            assert end_x >= 0\n            assert end_y >= 0\n\n            canvas.line(start_x, start_y, end_x, end_y, \"*\")\n\n    for vertex in sug.g.sV:\n        # NOTE: moving boxes w/2 to the left\n        x = vertex.view.xy[0] - vertex.view.w / 2.0\n        y = vertex.view.xy[1]\n\n        canvas.box(\n            int(round(x - minx)),\n            int(round(y - miny)),\n            vertex.view.w,\n            vertex.view.h,\n        )\n\n        canvas.text(\n            int(round(x - minx)) + 1, int(round(y - miny)) + 1, vertex.data\n        )\n\n    return canvas.draw()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/gs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/gs.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "GSDependency"], "tokens": 31}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.gs import GSOutput\n\n\nclass GSDependency(BaseDependency, GSOutput):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/hdfs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/hdfs.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "HDFSDependency"], "tokens": 34}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.hdfs import HDFSOutput\n\n\nclass HDFSDependency(BaseDependency, HDFSOutput):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/local.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/local.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "LocalDependency"], "tokens": 30}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.local import LocalOutput\n\n\nclass LocalDependency(BaseDependency, LocalOutput):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/s3.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/s3.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "S3Dependency"], "tokens": 34}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.s3 import S3Output\n\n\nclass S3Dependency(BaseDependency, S3Output):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/ssh.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/ssh.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "SSHDependency"], "tokens": 31}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.ssh import SSHOutput\n\n\nclass SSHDependency(BaseDependency, SSHOutput):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/gs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/gs.py__", "embedding": null, "metadata": {"file_path": "dvc/output/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["GSOutput", "imports"], "tokens": 30}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.base import BaseOutput\n\nfrom ..tree.gs import GSTree\n\n\nclass GSOutput(BaseOutput):\n    TREE_CLS = GSTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/prompt.py__Manages_user_prompts__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/prompt.py__Manages_user_prompts__", "embedding": null, "metadata": {"file_path": "dvc/prompt.py", "file_name": "prompt.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 57, "span_ids": ["ask", "password", "confirm", "docstring"], "tokens": 267}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages user prompts.\"\"\"\n\nimport logging\nimport sys\nfrom getpass import getpass\n\nlogger = logging.getLogger(__name__)\n\n\ndef ask(prompt, limited_to=None):\n    if not sys.stdout.isatty():\n        return None\n\n    while True:\n        try:\n            answer = input(prompt + \" \").lower()\n        except EOFError:\n            return None\n\n        if not limited_to:\n            return answer\n\n        if answer in limited_to:\n            return answer\n\n        logger.info(\n            \"Your response must be one of: {options}. \"\n            \"Please try again.\".format(options=limited_to)\n        )\n\n\ndef confirm(statement):\n    \"\"\"Ask the user for confirmation about the specified statement.\n\n    Args:\n        statement (unicode): statement to ask the user confirmation about.\n\n    Returns:\n        bool: whether or not specified statement was confirmed.\n    \"\"\"\n    prompt = f\"{statement} [y/n]\"\n    answer = ask(prompt, limited_to=[\"yes\", \"no\", \"y\", \"n\"])\n    return answer and answer.startswith(\"y\")\n\n\ndef password(statement):\n    \"\"\"Ask the user for a password.\n\n    Args:\n        statement (str): string to prompt the user with.\n\n    Returns:\n        str: password entered by the user.\n    \"\"\"\n    logger.info(f\"{statement}: \")\n    return getpass(\"\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.used_cache_Repo.used_cache.return.cache": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.used_cache_Repo.used_cache.return.cache", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 284, "end_line": 350, "span_ids": ["Repo.used_cache"], "tokens": 438}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    def used_cache(\n        self,\n        targets=None,\n        all_branches=False,\n        with_deps=False,\n        all_tags=False,\n        all_commits=False,\n        all_experiments=False,\n        remote=None,\n        force=False,\n        jobs=None,\n        recursive=False,\n        used_run_cache=None,\n        revs=None,\n    ):\n        \"\"\"Get the stages related to the given target and collect\n        the `info` of its outputs.\n\n        This is useful to know what files from the cache are _in use_\n        (namely, a file described as an output on a stage).\n\n        The scope is, by default, the working directory, but you can use\n        `all_branches`/`all_tags`/`all_commits`/`all_experiments` to expand\n        the scope.\n\n        Returns:\n            A dictionary with Schemes (representing output's location) mapped\n            to items containing the output's `dumpd` names and the output's\n            children (if the given output is a directory).\n        \"\"\"\n        from dvc.cache import NamedCache\n\n        cache = NamedCache()\n\n        for branch in self.brancher(\n            revs=revs,\n            all_branches=all_branches,\n            all_tags=all_tags,\n            all_commits=all_commits,\n            all_experiments=all_experiments,\n        ):\n            targets = targets or [None]\n\n            pairs = cat(\n                self.stage.collect_granular(\n                    target, recursive=recursive, with_deps=with_deps\n                )\n                for target in targets\n            )\n\n            suffix = f\"({branch})\" if branch else \"\"\n            for stage, filter_info in pairs:\n                used_cache = stage.get_used_cache(\n                    remote=remote,\n                    force=force,\n                    jobs=jobs,\n                    filter_info=filter_info,\n                )\n                cache.update(used_cache, suffix=suffix)\n\n        if used_run_cache:\n            used_cache = self.stage_cache.get_used_cache(\n                used_run_cache, remote=remote, force=force, jobs=jobs,\n            )\n            cache.update(used_cache)\n\n        return cache", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/destroy.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/destroy.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/destroy.py", "file_name": "destroy.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 18, "span_ids": ["_destroy_stages", "imports", "destroy"], "tokens": 106}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.utils.fs import remove\n\nfrom . import locked\n\n\n@locked\ndef _destroy_stages(repo):\n    for stage in repo.stages:\n        stage.unprotect_outs()\n        stage.dvcfile.remove(force=True)\n\n\n# NOTE: not locking `destroy`, as `remove` will need to delete `.dvc` dir,\n# which will cause issues on Windows, as `.dvc/lock` will be busy.\ndef destroy(repo):\n    _destroy_stages(repo)\n    remove(repo.dvc_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/install.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/install.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/install.py", "file_name": "install.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 3, "span_ids": ["install"], "tokens": 19}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def install(self, use_pre_commit_tool):\n    self.scm.install(use_pre_commit_tool)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/move.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/move.py_os_", "embedding": null, "metadata": {"file_path": "dvc/repo/move.py", "file_name": "move.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 75, "span_ids": ["imports", "_expand_target_path", "move"], "tokens": 471}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.exceptions import MoveNotDataSourceError\nfrom dvc.repo.scm_context import scm_context\n\nfrom . import locked\n\n\ndef _expand_target_path(from_path, to_path):\n    if os.path.isdir(to_path):\n        return os.path.join(to_path, os.path.basename(from_path))\n    return to_path\n\n\n@locked\n@scm_context\ndef move(self, from_path, to_path):\n    \"\"\"\n    Renames an output file and modifies the stage associated\n    to reflect the change on the pipeline.\n\n    If the output has the same name as its stage, it would\n    also rename the corresponding DVC-file.\n\n    E.g.\n          Having: (hello, hello.dvc)\n\n          $ dvc move hello greetings\n\n          Result: (greeting, greeting.dvc)\n\n    It only works with outputs generated by `add` or `import`,\n    also known as data sources.\n    \"\"\"\n    import dvc.output as Output\n    from dvc.stage import Stage\n\n    from ..dvcfile import DVC_FILE_SUFFIX, Dvcfile\n\n    from_out = Output.loads_from(Stage(self), [from_path])[0]\n    assert from_out.scheme == \"local\"\n\n    to_path = _expand_target_path(from_path, to_path)\n\n    outs = self.find_outs_by_path(from_out.fspath)\n    assert len(outs) == 1\n    out = outs[0]\n    stage = out.stage\n\n    if not stage.is_data_source:\n        raise MoveNotDataSourceError(stage.addressing)\n\n    stage_name = os.path.splitext(os.path.basename(stage.path))[0]\n    from_name = os.path.basename(from_out.fspath)\n    if stage_name == from_name:\n        os.unlink(stage.path)\n\n        stage.path = os.path.join(\n            os.path.dirname(to_path),\n            os.path.basename(to_path) + DVC_FILE_SUFFIX,\n        )\n\n        stage.wdir = os.path.abspath(\n            os.path.join(os.curdir, os.path.dirname(to_path))\n        )\n\n    to_path = os.path.relpath(to_path, stage.wdir)\n\n    to_out = Output.loads_from(stage, [to_path], out.use_cache, out.metric)[0]\n\n    out.move(to_out)\n    stage.save()\n\n    Dvcfile(self, stage.path).dump(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/remove.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/remove.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/remove.py", "file_name": "remove.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 20, "span_ids": ["imports", "remove"], "tokens": 83}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport typing\n\nfrom . import locked\n\nif typing.TYPE_CHECKING:\n    from dvc.repo import Repo\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\ndef remove(self: \"Repo\", target: str, outs: bool = False):\n    stages = self.stage.from_target(target)\n\n    for stage in stages:\n        stage.remove(remove_outs=outs, force=outs)\n\n    return stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/status.py__cloud_status__cloud_status.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/status.py__cloud_status__cloud_status.return.ret", "embedding": null, "metadata": {"file_path": "dvc/repo/status.py", "file_name": "status.py", "file_type": "text/x-python", "category": "implementation", "start_line": 39, "end_line": 109, "span_ids": ["_cloud_status"], "tokens": 408}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _cloud_status(\n    self,\n    targets=None,\n    jobs=None,\n    remote=None,\n    all_branches=False,\n    with_deps=False,\n    all_tags=False,\n    recursive=False,\n    all_commits=False,\n):\n    \"\"\"Returns a dictionary with the files that are new or deleted.\n\n    - new: Remote doesn't have the file\n    - deleted: File is no longer in the local cache\n    - missing: File doesn't exist neither in the cache, neither in remote\n\n    Example:\n            Given the following commands:\n\n            $ echo \"foo\" > foo\n            $ echo \"bar\" > bar\n            $ dvc add foo bar\n            $ dvc status -c\n\n            It will return something like:\n\n            { \"foo\": \"new\", \"bar\": \"new\" }\n\n            Now, after pushing and removing \"bar\" from the local cache:\n\n            $ dvc push\n            $ rm .dvc/cache/c1/57a79031e1c40f85931829bc5fc552\n\n            The result would be:\n\n            { \"bar\": \"deleted\" }\n    \"\"\"\n    import dvc.remote.base as cloud\n\n    used = self.used_cache(\n        targets,\n        all_branches=all_branches,\n        all_tags=all_tags,\n        all_commits=all_commits,\n        with_deps=with_deps,\n        force=True,\n        remote=remote,\n        jobs=jobs,\n        recursive=recursive,\n    )\n\n    ret = {}\n    status_info = self.cloud.status(\n        used, jobs, remote=remote, log_missing=False\n    )\n    for info in status_info.values():\n        name = info[\"name\"]\n        status_ = info[\"status\"]\n        if status_ == cloud.STATUS_OK:\n            continue\n\n        prefix_map = {\n            cloud.STATUS_DELETED: \"deleted\",\n            cloud.STATUS_NEW: \"new\",\n            cloud.STATUS_MISSING: \"missing\",\n        }\n\n        ret[name] = prefix_map[status_]\n\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/status.py_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/status.py_status_", "embedding": null, "metadata": {"file_path": "dvc/repo/status.py", "file_name": "status.py", "file_type": "text/x-python", "category": "implementation", "start_line": 106, "end_line": 148, "span_ids": ["status"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\ndef status(\n    self,\n    targets=None,\n    jobs=None,\n    cloud=False,\n    remote=None,\n    all_branches=False,\n    with_deps=False,\n    all_tags=False,\n    all_commits=False,\n    recursive=False,\n):\n    if isinstance(targets, str):\n        targets = [targets]\n\n    if cloud or remote:\n        return _cloud_status(\n            self,\n            targets,\n            jobs,\n            all_branches=all_branches,\n            with_deps=with_deps,\n            remote=remote,\n            all_tags=all_tags,\n            all_commits=all_commits,\n            recursive=True,\n        )\n\n    ignored = list(\n        compress(\n            [\"--all-branches\", \"--all-tags\", \"--all-commits\", \"--jobs\"],\n            [all_branches, all_tags, all_commits, jobs],\n        )\n    )\n    if ignored:\n        msg = \"The following options are meaningless for local status: {}\"\n        raise InvalidArgumentError(msg.format(\", \".join(ignored)))\n\n    return _local_status(\n        self, targets, with_deps=with_deps, recursive=recursive\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/__init__.py__Manages_source_control_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/__init__.py__Manages_source_control_", "embedding": null, "metadata": {"file_path": "dvc/scm/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 34, "span_ids": ["NoSCM", "SCM", "NoSCM.__getattr__", "docstring"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages source control systems (e.g. Git).\"\"\"\n\nfrom dvc.scm.base import Base, NoSCMError\nfrom dvc.scm.git import Git\n\n\n# Syntactic sugar to signal that this is an actual implementation for a DVC\n# project under no SCM control.\nclass NoSCM(Base):\n    def __getattr__(self, name):\n        raise NoSCMError\n\n\ndef SCM(\n    root_dir, search_parent_directories=True, no_scm=False\n):  # pylint: disable=invalid-name\n    \"\"\"Returns SCM instance that corresponds to a repo at the specified\n    path.\n\n    Args:\n        root_dir (str): path to a root directory of the repo.\n        search_parent_directories (bool): whether to look for repo root in\n        parent directories.\n        no_scm (bool): return NoSCM if True.\n\n    Returns:\n        dvc.scm.base.Base: SCM instance.\n    \"\"\"\n\n    if no_scm:\n        return NoSCM(root_dir)\n\n    return Git(root_dir, search_parent_directories=search_parent_directories)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State._prepare_db_State._prepare_db.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State._prepare_db_State._prepare_db.None_4", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 199, "end_line": 244, "span_ids": ["State._prepare_db"], "tokens": 356}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def _prepare_db(self, empty=False):\n        from dvc import __version__\n\n        if not empty:\n            cmd = \"PRAGMA user_version;\"\n            self._execute(cmd)\n            ret = self._fetchall()\n            assert len(ret) == 1\n            assert len(ret[0]) == 1\n            assert isinstance(ret[0][0], int)\n            version = ret[0][0]\n\n            if version > self.VERSION:\n                raise StateVersionTooNewError(\n                    __version__, self.VERSION, version\n                )\n            elif version < self.VERSION:\n                logger.warning(\n                    \"State file version '%d' is too old. \"\n                    \"Reformatting to the current version '%d'.\",\n                    version,\n                    self.VERSION,\n                )\n                cmd = \"DROP TABLE IF EXISTS {};\"\n                self._execute(cmd.format(self.STATE_TABLE))\n                self._execute(cmd.format(self.STATE_INFO_TABLE))\n                self._execute(cmd.format(self.LINK_STATE_TABLE))\n\n        # Check that the state file is indeed a database\n        cmd = \"CREATE TABLE IF NOT EXISTS {} ({})\"\n        self._execute(cmd.format(self.STATE_TABLE, self.STATE_TABLE_LAYOUT))\n        self._execute(\n            cmd.format(self.STATE_INFO_TABLE, self.STATE_INFO_TABLE_LAYOUT)\n        )\n        self._execute(\n            cmd.format(self.LINK_STATE_TABLE, self.LINK_STATE_TABLE_LAYOUT)\n        )\n\n        cmd = (\n            \"INSERT OR IGNORE INTO {} (count) SELECT 0 \"\n            \"WHERE NOT EXISTS (SELECT * FROM {})\"\n        )\n        self._execute(cmd.format(self.STATE_INFO_TABLE, self.STATE_INFO_TABLE))\n\n        cmd = \"PRAGMA user_version = {};\"\n        self._execute(cmd.format(self.VERSION))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.load_State._vacuum.self.database.isolation_level_1._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.load_State._vacuum.self.database.isolation_level_1._", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 246, "end_line": 282, "span_ids": ["State.load", "State._vacuum"], "tokens": 295}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def load(self):\n        \"\"\"Loads state database.\"\"\"\n        retries = 1\n        while True:\n            assert self.database is None\n            assert self.cursor is None\n            assert self.inserts == 0\n            empty = not os.path.exists(self.state_file)\n            # NOTE: we use nolock option because fcntl() lock sqlite uses\n            # doesn't work on some older NFS/CIFS filesystems.\n            # This opens a possibility of data corruption by concurrent writes,\n            # which is prevented by repo lock.\n            self.database = _connect_sqlite(self.state_file, {\"nolock\": 1})\n            self.cursor = self.database.cursor()\n\n            # Try loading once to check that the file is indeed a database\n            # and reformat it if it is not.\n            try:\n                self._prepare_db(empty=empty)\n                return\n            except sqlite3.DatabaseError:\n                self.cursor.close()\n                self.database.close()\n                self.database = None\n                self.cursor = None\n                self.inserts = 0\n                if retries > 0:\n                    os.unlink(self.state_file)\n                    retries -= 1\n                else:\n                    raise\n\n    def _vacuum(self):\n        # NOTE: see https://bugs.python.org/issue28518\n        self.database.isolation_level = None\n        self._execute(\"VACUUM\")\n        self.database.isolation_level = \"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.dump_State.dump.self.inserts.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.dump_State.dump.self.inserts.0", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 284, "end_line": 331, "span_ids": ["State.dump"], "tokens": 355}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def dump(self):\n        \"\"\"Saves state database.\"\"\"\n        assert self.database is not None\n\n        cmd = \"SELECT count from {} WHERE rowid=?\".format(\n            self.STATE_INFO_TABLE\n        )\n        self._execute(cmd, (self.STATE_INFO_ROW,))\n        ret = self._fetchall()\n        assert len(ret) == 1\n        assert len(ret[0]) == 1\n        count = self._from_sqlite(ret[0][0]) + self.inserts\n\n        if count > self.row_limit:\n            msg = \"cleaning up state, this might take a while.\"\n            logger.warning(msg)\n\n            delete = count - self.row_limit\n            delete += int(self.row_limit * (self.row_cleanup_quota / 100.0))\n            cmd = (\n                \"DELETE FROM {} WHERE timestamp IN (\"\n                \"SELECT timestamp FROM {} ORDER BY timestamp ASC LIMIT {});\"\n            )\n            self._execute(\n                cmd.format(self.STATE_TABLE, self.STATE_TABLE, delete)\n            )\n\n            self._vacuum()\n\n            cmd = \"SELECT COUNT(*) FROM {}\"\n\n            self._execute(cmd.format(self.STATE_TABLE))\n            ret = self._fetchall()\n            assert len(ret) == 1\n            assert len(ret[0]) == 1\n            count = ret[0][0]\n\n        cmd = \"UPDATE {} SET count = ? WHERE rowid = ?\".format(\n            self.STATE_INFO_TABLE\n        )\n        self._execute(cmd, (self._to_sqlite(count), self.STATE_INFO_ROW))\n\n        self.database.commit()\n        self.cursor.close()\n        self.database.close()\n        self.database = None\n        self.cursor = None\n        self.inserts = 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System._reflink_darwin_System._reflink_darwin.return.clonefile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System._reflink_darwin_System._reflink_darwin.return.clonefile_", "embedding": null, "metadata": {"file_path": "dvc/system.py", "file_name": "system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 77, "span_ids": ["System._reflink_darwin"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class System:\n\n    @staticmethod\n    def _reflink_darwin(src, dst):\n        import ctypes\n\n        LIBC = \"libc.dylib\"\n        LIBC_FALLBACK = \"/usr/lib/libSystem.dylib\"\n        try:\n            clib = ctypes.CDLL(LIBC)\n        except OSError as exc:\n            logger.debug(\n                \"unable to access '{}' (errno '{}'). \"\n                \"Falling back to '{}'.\".format(LIBC, exc.errno, LIBC_FALLBACK)\n            )\n            if exc.errno != errno.ENOENT:\n                raise\n            # NOTE: trying to bypass System Integrity Protection (SIP)\n            clib = ctypes.CDLL(LIBC_FALLBACK)\n\n        if not hasattr(clib, \"clonefile\"):\n            return -1\n\n        clonefile = clib.clonefile\n        clonefile.argtypes = [ctypes.c_char_p, ctypes.c_char_p, ctypes.c_int]\n        clonefile.restype = ctypes.c_int\n\n        return clonefile(\n            ctypes.c_char_p(os.fsencode(src)),\n            ctypes.c_char_p(os.fsencode(dst)),\n            ctypes.c_int(0),\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System.inode_System.inode.return.inode": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System.inode_System.inode.return.inode", "embedding": null, "metadata": {"file_path": "dvc/system.py", "file_name": "system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 160, "end_line": 186, "span_ids": ["System.inode"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class System:\n\n    @staticmethod\n    def inode(path):\n        path = os.fspath(path)\n\n        if System.is_unix():\n            import ctypes\n\n            inode = os.lstat(path).st_ino\n            # NOTE: See https://bugs.python.org/issue29619 and\n            # https://stackoverflow.com/questions/34643289/\n            # pythons-os-stat-is-returning-wrong-inode-value\n            inode = ctypes.c_ulong(inode).value\n        else:\n            # getdirinfo from ntfsutils works on both files and dirs\n            info = System._getdirinfo(path)\n            inode = abs(\n                hash(\n                    (\n                        info.dwVolumeSerialNumber,\n                        info.nFileIndexHigh,\n                        info.nFileIndexLow,\n                    )\n                )\n            )\n        assert inode >= 0\n        assert inode < 2 ** 64\n        return inode", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-google_compute_engine.logger.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-google_compute_engine.logger.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-google_compute_engine.logger.py", "file_name": "hook-google_compute_engine.logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports"], "tokens": 39}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from PyInstaller.utils.hooks import (  # pylint:disable=import-error\n    copy_metadata,\n)\n\ndatas = copy_metadata(\"google-compute-engine\")\nhiddenimports = [\"google_cloud_engine\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/innosetup/config_gen.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/innosetup/config_gen.py__", "embedding": null, "metadata": {"file_path": "scripts/innosetup/config_gen.py", "file_name": "config_gen.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 12, "span_ids": ["docstring"], "tokens": 68}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# This script generates config.ini for setup.iss script\nimport configparser\n\nfrom dvc import __version__\n\nconfig = configparser.ConfigParser()\nconfig.add_section(\"Version\")\nconfig.set(\"Version\", \"Version\", __version__)\n\nwith open(\"scripts/innosetup/config.ini\", \"w\") as f:\n    config.write(f)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/add.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/add.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 86, "span_ids": ["add_parser"], "tokens": 327}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    ADD_HELP = \"Track data files or directories with DVC.\"\n\n    parser = subparsers.add_parser(\n        \"add\",\n        parents=[parent_parser],\n        description=append_doc_link(ADD_HELP, \"add\"),\n        help=ADD_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Recursively add files under directory targets.\",\n    )\n    parser.add_argument(\n        \"--no-commit\",\n        action=\"store_true\",\n        default=False,\n        help=\"Don't put files/directories into cache.\",\n    )\n    parser.add_argument(\n        \"--external\",\n        action=\"store_true\",\n        default=False,\n        help=\"Allow targets that are outside of the DVC repository.\",\n    )\n    parser.add_argument(\n        \"--glob\",\n        action=\"store_true\",\n        default=False,\n        help=\"Allows targets containing shell-style wildcards.\",\n    )\n    parser.add_argument(\n        \"--file\",\n        help=\"Specify name of the DVC-file this command will generate.\",\n        metavar=\"<filename>\",\n    )\n    parser.add_argument(\n        \"--desc\",\n        type=str,\n        metavar=\"<text>\",\n        help=(\n            \"User description of the data (optional). \"\n            \"This doesn't affect any DVC operations.\"\n        ),\n    )\n    parser.add_argument(\n        \"targets\", nargs=\"+\", help=\"Input files/directories to add.\",\n    ).complete = completion.FILE\n    parser.set_defaults(func=CmdAdd)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/init.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/init.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/init.py", "file_name": "init.py", "file_type": "text/x-python", "category": "implementation", "start_line": 30, "end_line": 72, "span_ids": ["add_parser"], "tokens": 283}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    \"\"\"Setup parser for `dvc init`.\"\"\"\n    INIT_HELP = \"Initialize DVC in the current directory.\"\n    INIT_DESCRIPTION = (\n        \"Initialize DVC in the current directory. Expects directory\\n\"\n        \"to be a Git repository unless --no-scm option is specified.\"\n    )\n\n    init_parser = subparsers.add_parser(\n        \"init\",\n        parents=[parent_parser],\n        description=append_doc_link(INIT_DESCRIPTION, \"init\"),\n        help=INIT_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    init_parser.add_argument(\n        \"--no-scm\",\n        action=\"store_true\",\n        default=False,\n        help=\"Initiate DVC in directory that is \"\n        \"not tracked by any SCM tool (e.g. Git).\",\n    )\n    init_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Overwrite existing '.dvc/' directory. \"\n            \"This operation removes local cache.\"\n        ),\n    )\n    init_parser.add_argument(\n        \"--subdir\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Necessary for running this command inside a subdirectory of a \"\n            \"parent SCM repository.\"\n        ),\n    )\n    init_parser.set_defaults(func=CmdInit)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py_show_", "embedding": null, "metadata": {"file_path": "dvc/repo/metrics/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 80, "end_line": 129, "span_ids": ["show"], "tokens": 272}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\ndef show(\n    repo,\n    targets=None,\n    all_branches=False,\n    all_tags=False,\n    recursive=False,\n    revs=None,\n    all_commits=False,\n):\n    res = {}\n    metrics_found = False\n\n    for rev in repo.brancher(\n        revs=revs,\n        all_branches=all_branches,\n        all_tags=all_tags,\n        all_commits=all_commits,\n    ):\n        metrics = _collect_metrics(repo, targets, rev, recursive)\n\n        if not metrics_found and metrics:\n            metrics_found = True\n\n        vals = _read_metrics(repo, metrics, rev)\n\n        if vals:\n            res[rev] = vals\n\n    if not res:\n        if metrics_found:\n            raise NoMetricsParsedError(\"metrics\")\n        elif targets:\n            raise MetricDoesNotExistError(targets)\n        else:\n            raise NoMetricsFoundError(\"metrics\", \"-m/-M\")\n\n    # Hide workspace metrics if they are the same as in the active branch\n    try:\n        active_branch = repo.scm.active_branch()\n    except (TypeError, SCMError):\n        # TypeError - detached head\n        # SCMError - no repo case\n        pass\n    else:\n        if res.get(\"workspace\") == res.get(active_branch):\n            res.pop(\"workspace\", None)\n\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/base.py_Base_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/base.py_Base_", "embedding": null, "metadata": {"file_path": "dvc/scm/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 37, "end_line": 177, "span_ids": ["Base.untracked_files", "Base.checkout", "Base.tag", "Base.close", "Base.dir", "Base.ignore", "Base.reset_ignores", "Base.track_changed_files", "Base.is_repo", "Base.commit", "Base.reset_tracked_files", "Base.root_dir", "Base.list_tags", "Base.branch", "Base.cleanup_ignores", "Base.belongs_to_scm", "Base.add", "Base.install", "Base.list_all_commits", "Base.is_ignored", "Base.remind_to_track", "Base.ignore_file", "Base.active_branch", "Base.is_tracked", "Base.is_dirty", "Base.__repr__", "Base", "Base.track_file", "Base.__init__", "Base.ignore_list", "Base.is_submodule", "Base.ignore_remove", "Base.list_branches"], "tokens": 907}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Base:\n    \"\"\"Base class for source control management driver implementations.\"\"\"\n\n    def __init__(self, root_dir=os.curdir):\n        self._root_dir = os.path.realpath(root_dir)\n\n    @property\n    def root_dir(self) -> str:\n        return self._root_dir\n\n    def __repr__(self):\n        return \"{class_name}: '{directory}'\".format(\n            class_name=type(self).__name__, directory=self.dir\n        )\n\n    @property\n    def dir(self):\n        \"\"\"Path to a directory with SCM specific information.\"\"\"\n        return None\n\n    @staticmethod\n    def is_repo(root_dir):  # pylint: disable=unused-argument\n        \"\"\"Returns whether or not root_dir is a valid SCM repository.\"\"\"\n        return True\n\n    @staticmethod\n    def is_submodule(root_dir):  # pylint: disable=unused-argument\n        \"\"\"Returns whether or not root_dir is a valid SCM repository\n        submodule.\n        \"\"\"\n        return True\n\n    def is_ignored(self, path):  # pylint: disable=unused-argument\n        \"\"\"Returns whether or not path is ignored by SCM.\"\"\"\n        return False\n\n    def ignore(self, path):  # pylint: disable=unused-argument\n        \"\"\"Makes SCM ignore a specified path.\"\"\"\n\n    def ignore_remove(self, path):  # pylint: disable=unused-argument\n        \"\"\"Makes SCM stop ignoring a specified path.\"\"\"\n\n    @property\n    def ignore_file(self):\n        \"\"\"Filename for a file that contains ignored paths for this SCM.\"\"\"\n\n    def ignore_list(self, p_list):\n        \"\"\"Makes SCM ignore all paths specified in a list.\"\"\"\n        return [self.ignore(path) for path in p_list]\n\n    def add(self, paths):\n        \"\"\"Makes SCM start tracking every path from a specified list of paths.\n        \"\"\"\n\n    def commit(self, msg):\n        \"\"\"Makes SCM create a commit.\"\"\"\n\n    def checkout(self, branch, create_new=False):\n        \"\"\"Makes SCM checkout a branch.\"\"\"\n\n    def branch(self, branch):\n        \"\"\"Makes SCM create a branch with a specified name.\"\"\"\n\n    def tag(self, tag):\n        \"\"\"Makes SCM create a tag with a specified name.\"\"\"\n\n    def untracked_files(self):  # pylint: disable=no-self-use\n        \"\"\"Returns a list of untracked files.\"\"\"\n        return []\n\n    def is_tracked(self, path):  # pylint: disable=no-self-use, unused-argument\n        \"\"\"Returns whether or not a specified path is tracked.\"\"\"\n        return False\n\n    def is_dirty(self):\n        \"\"\"Return whether the SCM contains uncommitted changes.\"\"\"\n        return False\n\n    def active_branch(self):  # pylint: disable=no-self-use\n        \"\"\"Returns current branch in the repo.\"\"\"\n        return \"\"\n\n    def list_branches(self):  # pylint: disable=no-self-use\n        \"\"\"Returns a list of available branches in the repo.\"\"\"\n        return []\n\n    def list_tags(self):  # pylint: disable=no-self-use\n        \"\"\"Returns a list of available tags in the repo.\"\"\"\n        return []\n\n    def list_all_commits(self):  # pylint: disable=no-self-use\n        \"\"\"Returns a list of commits in the repo.\"\"\"\n        return []\n\n    def install(self, use_pre_commit_tool=False):\n        \"\"\"\n        Adds dvc commands to SCM hooks for the repo.\n\n        If use_pre_commit_tool is set and pre-commit is\n        installed it will be used to install the hooks.\n        \"\"\"\n\n    def cleanup_ignores(self):\n        \"\"\"\n        This method should clean up ignores (eg. entries in .gitignore),\n        use, when method editing ignores (eg. add, run, import) fails to\n        perform its task.\n        \"\"\"\n\n    def reset_ignores(self):\n        \"\"\"\n        Method to reset in-memory ignore storing mechanism.\n        \"\"\"\n\n    def reset_tracked_files(self):\n        \"\"\"\n        Method to reset in-memory tracked files storing mechanism.\n        \"\"\"\n\n    def remind_to_track(self):\n        \"\"\"\n        Method to remind user to track newly created files handled by scm\n        \"\"\"\n\n    def track_changed_files(self):\n        \"\"\"\n        Method to stage files that have changed\n        \"\"\"\n\n    def track_file(self, path):\n        \"\"\"\n        Method to add file to mechanism that will remind user\n        to track new files\n        \"\"\"\n\n    def belongs_to_scm(self, path):\n        \"\"\"Return boolean whether file belongs to scm\"\"\"\n\n    def close(self):\n        \"\"\" Method to close the files \"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_gs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_gs.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_gs.py", "file_name": "test_gs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestGSDependency", "TestGSDependency._get_cls"], "tokens": 44}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.gs import GSDependency\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\nclass TestGSDependency(TestLocalDependency):\n    def _get_cls(self):\n        return GSDependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_hdfs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_hdfs.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_hdfs.py", "file_name": "test_hdfs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 13, "span_ids": ["TestHDFSDependency", "imports", "TestHDFSDependency._get_cls"], "tokens": 82}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.dependency.hdfs import HDFSDependency\nfrom tests import PY39, PYARROW_NOT_AVAILABLE\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\n@pytest.mark.skipif(PY39, reason=PYARROW_NOT_AVAILABLE)\n@pytest.mark.hdfs\nclass TestHDFSDependency(TestLocalDependency):\n    def _get_cls(self):\n        return HDFSDependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_http.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_http.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestHTTPDependency._get_cls", "TestHTTPDependency"], "tokens": 41}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.http import HTTPDependency\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\nclass TestHTTPDependency(TestLocalDependency):\n    def _get_cls(self):\n        return HTTPDependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_local.py_mock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_local.py_mock_", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_local.py", "file_name": "test_local.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 21, "span_ids": ["imports", "TestLocalDependency.test_save_missing", "TestLocalDependency._get_dependency", "TestLocalDependency", "TestLocalDependency._get_cls"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import mock\n\nfrom dvc.dependency import LocalDependency\nfrom dvc.stage import Stage\nfrom tests.basic_env import TestDvc\n\n\nclass TestLocalDependency(TestDvc):\n    def _get_cls(self):\n        return LocalDependency\n\n    def _get_dependency(self):\n        stage = Stage(self.dvc)\n        return self._get_cls()(stage, \"path\")\n\n    def test_save_missing(self):\n        d = self._get_dependency()\n        with mock.patch.object(d.tree, \"exists\", return_value=False):\n            with self.assertRaises(d.DoesNotExistError):\n                d.save()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_s3.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_s3.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestS3Dependency", "TestS3Dependency._get_cls"], "tokens": 45}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.s3 import S3Dependency\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\nclass TestS3Dependency(TestLocalDependency):\n    def _get_cls(self):\n        return S3Dependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_ssh.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_ssh.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["TestSSHDependency", "imports", "TestSSHDependency._get_cls"], "tokens": 42}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.ssh import SSHDependency\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\nclass TestSSHDependency(TestLocalDependency):\n    def _get_cls(self):\n        return SSHDependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_gs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_gs.py__", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_gs.py", "file_name": "test_gs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestGSOutput._get_cls", "TestGSOutput"], "tokens": 39}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.gs import GSOutput\nfrom tests.unit.output.test_local import TestLocalOutput\n\n\nclass TestGSOutput(TestLocalOutput):\n    def _get_cls(self):\n        return GSOutput", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_hdfs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_hdfs.py__", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_hdfs.py", "file_name": "test_hdfs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 13, "span_ids": ["imports", "TestHDFSOutput._get_cls", "TestHDFSOutput"], "tokens": 79}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.output.hdfs import HDFSOutput\nfrom tests import PY39, PYARROW_NOT_AVAILABLE\nfrom tests.unit.output.test_local import TestLocalOutput\n\n\n@pytest.mark.skipif(PY39, reason=PYARROW_NOT_AVAILABLE)\n@pytest.mark.hdfs\nclass TestHDFSOutput(TestLocalOutput):\n    def _get_cls(self):\n        return HDFSOutput", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_local.py_TestGetFilesNumber_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_local.py_TestGetFilesNumber_", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_local.py", "file_name": "test_local.py", "file_type": "text/x-python", "category": "test", "start_line": 72, "end_line": 102, "span_ids": ["TestGetFilesNumber.test_return_multiple_for_dir", "TestGetFilesNumber.test_return_0_on_no_cache", "TestGetFilesNumber", "TestGetFilesNumber.test_return_1_on_single_file_cache", "TestGetFilesNumber._get_output"], "tokens": 245}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGetFilesNumber(TestDvc):\n    def _get_output(self):\n        stage = Stage(self.dvc)\n        return LocalOutput(stage, \"path\")\n\n    def test_return_0_on_no_cache(self):\n        o = self._get_output()\n        o.use_cache = False\n        self.assertEqual(0, o.get_files_number())\n\n    @patch.object(\n        LocalCache,\n        \"get_dir_cache\",\n        return_value=DirInfo.from_list(\n            [\n                {\"relpath\": \"foo\", \"md5\": \"asdf\"},\n                {\"relpath\": \"bar\", \"md5\": \"qwe\"},\n            ]\n        ),\n    )\n    def test_return_multiple_for_dir(self, _mock_get_dir_cache):\n        o = self._get_output()\n        o.hash_info = HashInfo(\"md5\", \"12345678.dir\")\n        self.assertEqual(2, o.get_files_number())\n\n    @patch.object(LocalOutput, \"is_dir_checksum\", False)\n    def test_return_1_on_single_file_cache(self):\n        o = self._get_output()\n        o.hash_info = HashInfo(\"md5\", \"12345678\")\n        self.assertEqual(1, o.get_files_number())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_s3.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_s3.py__", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestS3Output._get_cls", "TestS3Output"], "tokens": 43}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.s3 import S3Output\nfrom tests.unit.output.test_local import TestLocalOutput\n\n\nclass TestS3Output(TestLocalOutput):\n    def _get_cls(self):\n        return S3Output", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_ssh.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_ssh.py__", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestSSHOutput", "TestSSHOutput._get_cls"], "tokens": 40}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.ssh import SSHOutput\nfrom tests.unit.output.test_local import TestLocalOutput\n\n\nclass TestSSHOutput(TestLocalOutput):\n    def _get_cls(self):\n        return SSHOutput", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_prompt.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_prompt.py__", "embedding": null, "metadata": {"file_path": "tests/unit/test_prompt.py", "file_name": "test_prompt.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 16, "span_ids": ["TestConfirm.test_eof", "imports", "TestConfirm"], "tokens": 88}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from unittest import TestCase\n\nimport mock\n\nfrom dvc.prompt import confirm\n\n\nclass TestConfirm(TestCase):\n    @mock.patch(\"sys.stdout.isatty\", return_value=True)\n    @mock.patch(\"dvc.prompt.input\", side_effect=EOFError)\n    def test_eof(self, mock_input, mock_isatty):\n        ret = confirm(\"message\")\n        mock_isatty.assert_called()\n        mock_input.assert_called()\n        self.assertFalse(ret)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_TestContainsLink_TestContainsLink.test_should_return_false_on_no_more_dirs_below_path.dirname_patch_assert_call": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_TestContainsLink_TestContainsLink.test_should_return_false_on_no_more_dirs_below_path.dirname_patch_assert_call", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 38, "end_line": 62, "span_ids": ["TestContainsLink.test_should_return_false_on_path_eq_to_base_path", "TestContainsLink.test_should_return_false_on_no_more_dirs_below_path", "TestContainsLink.test_should_raise_exception_on_base_path_not_in_path", "TestContainsLink.test_should_return_true_on_symlink_in_path", "TestContainsLink"], "tokens": 248}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestContainsLink(TestCase):\n    def test_should_raise_exception_on_base_path_not_in_path(self):\n        with self.assertRaises(BasePathNotInCheckedPathException):\n            contains_symlink_up_to(os.path.join(\"foo\", \"path\"), \"bar\")\n\n    @patch.object(System, \"is_symlink\", return_value=True)\n    def test_should_return_true_on_symlink_in_path(self, _):\n        base_path = \"foo\"\n        path = os.path.join(base_path, \"bar\")\n        self.assertTrue(contains_symlink_up_to(path, base_path))\n\n    @patch.object(System, \"is_symlink\", return_value=False)\n    def test_should_return_false_on_path_eq_to_base_path(self, _):\n        path = \"path\"\n        self.assertFalse(contains_symlink_up_to(path, path))\n\n    @patch.object(System, \"is_symlink\", return_value=False)\n    @patch.object(os.path, \"dirname\", side_effect=lambda arg: arg)\n    def test_should_return_false_on_no_more_dirs_below_path(\n        self, dirname_patch, _\n    ):\n        self.assertFalse(\n            contains_symlink_up_to(os.path.join(\"foo\", \"path\"), \"foo\")\n        )\n        dirname_patch.assert_called_once()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 161, "end_line": 216, "span_ids": ["add_parser"], "tokens": 358}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    DIFF_DESCRIPTION = (\n        \"Show added, modified, or deleted data between commits in the DVC\"\n        \" repository, or between a commit and the workspace.\"\n    )\n    diff_parser = subparsers.add_parser(\n        \"diff\",\n        parents=[parent_parser],\n        description=append_doc_link(DIFF_DESCRIPTION, \"diff\"),\n        help=DIFF_DESCRIPTION,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    diff_parser.add_argument(\n        \"--targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these tracked files or directories. \"\n            \"Accepts one or more file paths.\"\n        ),\n    ).complete = completion.FILE\n    diff_parser.add_argument(\n        \"a_rev\",\n        help=\"Old Git commit to compare (defaults to HEAD)\",\n        nargs=\"?\",\n        default=\"HEAD\",\n    )\n    diff_parser.add_argument(\n        \"b_rev\",\n        help=(\"New Git commit to compare (defaults to the current workspace)\"),\n        nargs=\"?\",\n    )\n    diff_parser.add_argument(\n        \"--show-json\",\n        help=\"Format the output into a JSON\",\n        action=\"store_true\",\n        default=False,\n    )\n    diff_parser.add_argument(\n        \"--show-hash\",\n        help=\"Display hash value for each entry\",\n        action=\"store_true\",\n        default=False,\n    )\n    diff_parser.add_argument(\n        \"--show-md\",\n        help=\"Show tabulated output in the Markdown format (GFM).\",\n        action=\"store_true\",\n        default=False,\n    )\n    diff_parser.add_argument(\n        \"--hide-missing\",\n        help=\"Hide missing cache file status.\",\n        action=\"store_true\",\n    )\n    diff_parser.set_defaults(func=CmdDiff)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/daemon.py__spawn_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/daemon.py__spawn_", "embedding": null, "metadata": {"file_path": "dvc/daemon.py", "file_name": "daemon.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 110, "span_ids": ["_spawn", "daemon"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _spawn(cmd, env):\n    logger.debug(f\"Trying to spawn '{cmd}'\")\n\n    if os.name == \"nt\":\n        _spawn_windows(cmd, env)\n    elif os.name == \"posix\":\n        _spawn_posix(cmd, env)\n    else:\n        raise NotImplementedError\n\n    logger.debug(f\"Spawned '{cmd}'\")\n\n\ndef daemon(args):\n    \"\"\"Launch a `dvc daemon` command in a detached process.\n\n    Args:\n        args (list): list of arguments to append to `dvc daemon` command.\n    \"\"\"\n    if os.environ.get(DVC_DAEMON):\n        logger.debug(\"skipping launching a new daemon.\")\n        return\n\n    cmd = [\"daemon\", \"-q\"] + args\n\n    env = fix_env()\n    file_path = os.path.abspath(inspect.stack()[0][1])\n    env[\"PYTHONPATH\"] = os.path.dirname(os.path.dirname(file_path))\n    env[DVC_DAEMON] = \"1\"\n\n    _spawn(cmd, env)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/env.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/env.py__", "embedding": null, "metadata": {"file_path": "dvc/env.py", "file_name": "env.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 5, "span_ids": ["impl"], "tokens": 42}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "DVC_CHECKPOINT = \"DVC_CHECKPOINT\"\nDVC_DAEMON = \"DVC_DAEMON\"\nDVC_PAGER = \"DVC_PAGER\"\nDVC_ROOT = \"DVC_ROOT\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_setup_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_setup_", "embedding": null, "metadata": {"file_path": "dvc/logger.py", "file_name": "logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 182, "end_line": 238, "span_ids": ["setup"], "tokens": 364}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def setup(level=logging.INFO):\n    colorama.init()\n\n    addLoggingLevel(\"TRACE\", logging.DEBUG - 5)\n    logging.config.dictConfig(\n        {\n            \"version\": 1,\n            \"filters\": {\n                \"exclude_errors\": {\"()\": excludeFilter(logging.WARNING)},\n                \"exclude_info\": {\"()\": excludeFilter(logging.INFO)},\n                \"exclude_debug\": {\"()\": excludeFilter(logging.DEBUG)},\n            },\n            \"formatters\": {\"color\": {\"()\": ColorFormatter}},\n            \"handlers\": {\n                \"console_info\": {\n                    \"class\": \"dvc.logger.LoggerHandler\",\n                    \"level\": \"INFO\",\n                    \"formatter\": \"color\",\n                    \"stream\": \"ext://sys.stdout\",\n                    \"filters\": [\"exclude_errors\"],\n                },\n                \"console_debug\": {\n                    \"class\": \"dvc.logger.LoggerHandler\",\n                    \"level\": \"DEBUG\",\n                    \"formatter\": \"color\",\n                    \"stream\": \"ext://sys.stdout\",\n                    \"filters\": [\"exclude_info\"],\n                },\n                \"console_trace\": {\n                    \"class\": \"dvc.logger.LoggerHandler\",\n                    \"level\": \"TRACE\",\n                    \"formatter\": \"color\",\n                    \"stream\": \"ext://sys.stdout\",\n                    \"filters\": [\"exclude_debug\"],\n                },\n                \"console_errors\": {\n                    \"class\": \"dvc.logger.LoggerHandler\",\n                    \"level\": \"WARNING\",\n                    \"formatter\": \"color\",\n                    \"stream\": \"ext://sys.stderr\",\n                },\n            },\n            \"loggers\": {\n                \"dvc\": {\n                    \"level\": level,\n                    \"handlers\": [\n                        \"console_info\",\n                        \"console_debug\",\n                        \"console_trace\",\n                        \"console_errors\",\n                    ],\n                },\n            },\n            \"disable_existing_loggers\": False,\n        }\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State._file_metadata_changed_State._update_state_for_path_changed.self__execute_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State._file_metadata_changed_State._update_state_for_path_changed.self__execute_", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 333, "end_line": 363, "span_ids": ["State._update_state_record_timestamp_for_inode", "State._file_metadata_changed", "State._update_state_for_path_changed"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    @staticmethod\n    def _file_metadata_changed(actual_mtime, mtime, actual_size, size):\n        return actual_mtime != mtime or actual_size != size\n\n    def _update_state_record_timestamp_for_inode(self, actual_inode):\n        cmd = \"UPDATE {} SET timestamp = ? WHERE inode = ?\".format(\n            self.STATE_TABLE\n        )\n        self._execute(\n            cmd, (current_timestamp(), self._to_sqlite(actual_inode))\n        )\n\n    def _update_state_for_path_changed(\n        self, actual_inode, actual_mtime, actual_size, checksum\n    ):\n        cmd = (\n            \"UPDATE {} SET \"\n            \"mtime = ?, size = ?, \"\n            \"md5 = ?, timestamp = ? \"\n            \"WHERE inode = ?\"\n        ).format(self.STATE_TABLE)\n        self._execute(\n            cmd,\n            (\n                actual_mtime,\n                actual_size,\n                checksum,\n                current_timestamp(),\n                self._to_sqlite(actual_inode),\n            ),\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State._insert_new_state_record_State.get_state_record_for_inode.return.None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State._insert_new_state_record_State.get_state_record_for_inode.return.None", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 365, "end_line": 397, "span_ids": ["State.get_state_record_for_inode", "State._insert_new_state_record"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def _insert_new_state_record(\n        self, actual_inode, actual_mtime, actual_size, checksum\n    ):\n        assert checksum is not None\n\n        cmd = (\n            \"INSERT INTO {}(inode, mtime, size, md5, timestamp) \"\n            \"VALUES (?, ?, ?, ?, ?)\"\n        ).format(self.STATE_TABLE)\n        self._execute(\n            cmd,\n            (\n                self._to_sqlite(actual_inode),\n                actual_mtime,\n                actual_size,\n                checksum,\n                current_timestamp(),\n            ),\n        )\n        self.inserts += 1\n\n    def get_state_record_for_inode(self, inode):\n        cmd = (\n            \"SELECT mtime, size, md5, timestamp from {} WHERE \"\n            \"inode=?\".format(self.STATE_TABLE)\n        )\n        self._execute(cmd, (self._to_sqlite(inode),))\n        results = self._fetchall()\n        if results:\n            # uniqueness constrain on inode\n            assert len(results) == 1\n            return results[0]\n        return None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.save_State.save.self__update_state_for_pa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.save_State.save.self__update_state_for_pa", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 400, "end_line": 424, "span_ids": ["State.save"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def save(self, path_info, hash_info):\n        \"\"\"Save hash for the specified path info.\n\n        Args:\n            path_info (dict): path_info to save hash for.\n            hash_info (HashInfo): hash to save.\n        \"\"\"\n        assert isinstance(path_info, str) or path_info.scheme == \"local\"\n        assert hash_info\n        assert isinstance(hash_info, HashInfo)\n        assert os.path.exists(path_info)\n\n        actual_mtime, actual_size = get_mtime_and_size(path_info, self.tree)\n        actual_inode = get_inode(path_info)\n\n        existing_record = self.get_state_record_for_inode(actual_inode)\n        if not existing_record:\n            self._insert_new_state_record(\n                actual_inode, actual_mtime, actual_size, hash_info.value\n            )\n            return\n\n        self._update_state_for_path_changed(\n            actual_inode, actual_mtime, actual_size, hash_info.value\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater._notify_Updater._notify.logger_info_boxify_messag": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater._notify_Updater._notify.logger_info_boxify_messag", "embedding": null, "metadata": {"file_path": "dvc/updater.py", "file_name": "updater.py", "file_type": "text/x-python", "category": "implementation", "start_line": 98, "end_line": 116, "span_ids": ["Updater._notify"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Updater:\n\n    def _notify(self, latest):\n        if not sys.stdout.isatty():\n            return\n\n        message = (\n            \"Update available {red}{current}{reset} -> {green}{latest}{reset}\"\n            + \"\\n\"\n            + self._get_update_instructions()\n        ).format(\n            red=colorama.Fore.RED,\n            reset=colorama.Fore.RESET,\n            green=colorama.Fore.GREEN,\n            yellow=colorama.Fore.YELLOW,\n            blue=colorama.Fore.BLUE,\n            current=self.current,\n            latest=latest,\n        )\n\n        logger.info(boxify(message, border_color=\"yellow\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_boxify_boxify.return.box_str": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_boxify_boxify.return.box_str", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 311, "end_line": 355, "span_ids": ["boxify"], "tokens": 324}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def boxify(message, border_color=None):\n    \"\"\"Put a message inside a box.\n\n    Args:\n        message (unicode): message to decorate.\n        border_color (unicode): name of the color to outline the box with.\n    \"\"\"\n    lines = message.split(\"\\n\")\n    max_width = max(_visual_width(line) for line in lines)\n\n    padding_horizontal = 5\n    padding_vertical = 1\n\n    box_size_horizontal = max_width + (padding_horizontal * 2)\n\n    chars = {\"corner\": \"+\", \"horizontal\": \"-\", \"vertical\": \"|\", \"empty\": \" \"}\n\n    margin = \"{corner}{line}{corner}\\n\".format(\n        corner=chars[\"corner\"], line=chars[\"horizontal\"] * box_size_horizontal\n    )\n\n    padding_lines = [\n        \"{border}{space}{border}\\n\".format(\n            border=colorize(chars[\"vertical\"], color=border_color),\n            space=chars[\"empty\"] * box_size_horizontal,\n        )\n        * padding_vertical\n    ]\n\n    content_lines = [\n        \"{border}{space}{content}{space}{border}\\n\".format(\n            border=colorize(chars[\"vertical\"], color=border_color),\n            space=chars[\"empty\"] * padding_horizontal,\n            content=_visual_center(line, max_width),\n        )\n        for line in lines\n    ]\n\n    box_str = \"{margin}{padding}{content}{padding}{margin}\".format(\n        margin=colorize(margin, color=border_color),\n        padding=\"\".join(padding_lines),\n        content=\"\".join(content_lines),\n    )\n\n    return box_str", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/version.py__Used_in_setup_py_so_do__generate_version.return._base_version_short_sh": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/version.py__Used_in_setup_py_so_do__generate_version.return._base_version_short_sh", "embedding": null, "metadata": {"file_path": "dvc/version.py", "file_name": "version.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 26, "span_ids": ["_generate_version", "docstring"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# Used in setup.py, so don't pull any additional dependencies\n#\n# Based on:\n#   - https://github.com/python/mypy/blob/master/mypy/version.py\n#   - https://github.com/python/mypy/blob/master/mypy/git.py\nimport os\nimport subprocess\n\n_BASE_VERSION = \"1.11.0\"\n\n\ndef _generate_version(base_version):\n    \"\"\"Generate a version with information about the Git repository.\"\"\"\n    pkg_dir = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))\n\n    if not _is_git_repo(pkg_dir) or not _have_git():\n        return base_version\n\n    if _is_release(pkg_dir, base_version) and not _is_dirty(pkg_dir):\n        return base_version\n\n    return \"{base_version}+{short_sha}{dirty}\".format(\n        base_version=base_version,\n        short_sha=_git_revision(pkg_dir).decode(\"utf-8\")[0:6],\n        dirty=\".mod\" if _is_dirty(pkg_dir) else \"\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/version.py__is_git_repo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/version.py__is_git_repo_", "embedding": null, "metadata": {"file_path": "dvc/version.py", "file_name": "version.py", "file_type": "text/x-python", "category": "implementation", "start_line": 30, "end_line": 76, "span_ids": ["_have_git", "_is_dirty", "_is_release", "impl:3", "_git_revision", "_is_git_repo"], "tokens": 279}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _is_git_repo(dir_path):\n    \"\"\"Is the given directory version-controlled with Git?\"\"\"\n    return os.path.exists(os.path.join(dir_path, \".git\"))\n\n\ndef _have_git():\n    \"\"\"Can we run the git executable?\"\"\"\n    try:\n        subprocess.check_output([\"git\", \"--help\"])\n        return True\n    except subprocess.CalledProcessError:\n        return False\n    except OSError:\n        return False\n\n\ndef _is_release(dir_path, base_version):\n    try:\n        output = subprocess.check_output(\n            [\"git\", \"describe\", \"--tags\", \"--exact-match\"],\n            cwd=dir_path,\n            stderr=subprocess.STDOUT,\n        ).decode(\"utf-8\")\n        tag = output.strip()\n        return tag == base_version\n    except subprocess.CalledProcessError:\n        return False\n\n\ndef _git_revision(dir_path):\n    \"\"\"Get SHA of the HEAD of a Git repository.\"\"\"\n    return subprocess.check_output(\n        [\"git\", \"rev-parse\", \"HEAD\"], cwd=dir_path\n    ).strip()\n\n\ndef _is_dirty(dir_path):\n    \"\"\"Check whether a git repository has uncommitted changes.\"\"\"\n    try:\n        subprocess.check_call([\"git\", \"diff\", \"--quiet\"], cwd=dir_path)\n        return False\n    except subprocess.CalledProcessError:\n        return True\n\n\n__version__ = _generate_version(_BASE_VERSION)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddLocalRemoteFile_TestAddLocalRemoteFile.test.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddLocalRemoteFile_TestAddLocalRemoteFile.test.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 236, "span_ids": ["TestAddLocalRemoteFile.test", "TestAddLocalRemoteFile"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddLocalRemoteFile(TestDvc):\n    def test(self):\n        \"\"\"\n        Making sure that 'remote' syntax is handled properly for local outs.\n        \"\"\"\n        cwd = os.getcwd()\n        remote = \"myremote\"\n\n        ret = main([\"remote\", \"add\", remote, cwd])\n        self.assertEqual(ret, 0)\n\n        self.dvc = DvcRepo()\n\n        foo = f\"remote://{remote}/{self.FOO}\"\n        ret = main([\"add\", foo])\n        self.assertEqual(ret, 0)\n\n        d = load_yaml(\"foo.dvc\")\n        self.assertEqual(d[\"outs\"][0][\"path\"], foo)\n\n        bar = os.path.join(cwd, self.BAR)\n        ret = main([\"add\", bar])\n        self.assertEqual(ret, 0)\n\n        d = load_yaml(\"bar.dvc\")\n        self.assertEqual(d[\"outs\"][0][\"path\"], self.BAR)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestCmdAdd_TestDoubleAddUnchanged.test_dir.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestCmdAdd_TestDoubleAddUnchanged.test_dir.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 200, "end_line": 222, "span_ids": ["TestCmdAdd.test", "TestDoubleAddUnchanged.test_file", "TestDoubleAddUnchanged", "TestDoubleAddUnchanged.test_dir", "TestCmdAdd"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCmdAdd(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", \"non-existing-file\"])\n        self.assertNotEqual(ret, 0)\n\n\nclass TestDoubleAddUnchanged(TestDvc):\n    def test_file(self):\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n    def test_dir(self):\n        ret = main([\"add\", self.DATA_DIR])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.DATA_DIR])\n        self.assertEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestShouldThrowProperExceptionOnCorruptedStageFile_TestShouldThrowProperExceptionOnCorruptedStageFile.test.assert_expected_error_in_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestShouldThrowProperExceptionOnCorruptedStageFile_TestShouldThrowProperExceptionOnCorruptedStageFile.test.assert_expected_error_in_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 427, "end_line": 447, "span_ids": ["TestShouldThrowProperExceptionOnCorruptedStageFile", "TestShouldThrowProperExceptionOnCorruptedStageFile.test"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestShouldThrowProperExceptionOnCorruptedStageFile(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.FOO])\n        assert 0 == ret\n\n        foo_stage = relpath(self.FOO + DVC_FILE_SUFFIX)\n\n        # corrupt stage file\n        with open(foo_stage, \"a+\") as file:\n            file.write(\"this will break yaml file structure\")\n\n        self._caplog.clear()\n\n        ret = main([\"add\", self.BAR])\n        assert 1 == ret\n\n        expected_error = (\n            f\"unable to read: '{foo_stage}', YAML file structure is corrupted\"\n        )\n\n        assert expected_error in self._caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddFilename_TestAddFilename.test.None_10": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddFilename_TestAddFilename.test.None_10", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 450, "end_line": 475, "span_ids": ["TestAddFilename", "TestAddFilename.test"], "tokens": 251}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddFilename(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.FOO, self.BAR, \"--file\", \"error.dvc\"])\n        self.assertNotEqual(0, ret)\n\n        ret = main([\"add\", \"-R\", self.DATA_DIR, \"--file\", \"error.dvc\"])\n        self.assertNotEqual(0, ret)\n\n        with self.assertRaises(RecursiveAddingWhileUsingFilename):\n            self.dvc.add(self.DATA_DIR, recursive=True, fname=\"error.dvc\")\n\n        ret = main([\"add\", self.DATA_DIR, \"--file\", \"data_directory.dvc\"])\n        self.assertEqual(0, ret)\n        self.assertTrue(os.path.exists(\"data_directory.dvc\"))\n\n        ret = main([\"add\", self.FOO, \"--file\", \"bar.dvc\"])\n        self.assertEqual(0, ret)\n        self.assertTrue(os.path.exists(\"bar.dvc\"))\n        self.assertFalse(os.path.exists(\"foo.dvc\"))\n\n        os.remove(\"bar.dvc\")\n\n        ret = main([\"add\", self.FOO, \"--file\", \"bar.dvc\"])\n        self.assertEqual(0, ret)\n        self.assertTrue(os.path.exists(\"bar.dvc\"))\n        self.assertFalse(os.path.exists(\"foo.dvc\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestExternalCacheDir_TestExternalCacheDir.test_remote_references.assert_self_dvc_cache_ssh": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestExternalCacheDir_TestExternalCacheDir.test_remote_references.assert_self_dvc_cache_ssh", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 69, "end_line": 95, "span_ids": ["TestExternalCacheDir.test_remote_references", "TestExternalCacheDir.test", "TestExternalCacheDir"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestExternalCacheDir(TestDvc):\n    def test(self):\n        cache_dir = TestDvc.mkdtemp()\n\n        ret = main([\"config\", \"cache.dir\", cache_dir])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.path.exists(self.dvc.cache.local.cache_dir))\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.DATA_DIR])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.path.exists(\".dvc/cache\"))\n        self.assertNotEqual(len(os.listdir(cache_dir)), 0)\n\n    def test_remote_references(self):\n        ssh_url = \"ssh://user@localhost:23\"\n        assert main([\"remote\", \"add\", \"storage\", ssh_url]) == 0\n        assert main([\"remote\", \"add\", \"cache\", \"remote://storage/tmp\"]) == 0\n        assert main([\"config\", \"cache.ssh\", \"cache\"]) == 0\n\n        self.dvc.__init__()\n\n        assert self.dvc.cache.ssh.tree.path_info == ssh_url + \"/tmp\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestSharedCacheDir_TestSharedCacheDir.test.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestSharedCacheDir_TestSharedCacheDir.test.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 135, "span_ids": ["TestSharedCacheDir", "TestSharedCacheDir.test"], "tokens": 332}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestSharedCacheDir(TestDir):\n    def test(self):\n        cache_dir = os.path.abspath(os.path.join(os.curdir, \"cache\"))\n        for d in [\"dir1\", \"dir2\"]:\n            os.mkdir(d)\n            os.chdir(d)\n\n            ret = main([\"init\", \"--no-scm\"])\n            self.assertEqual(ret, 0)\n\n            ret = main([\"config\", \"cache.dir\", cache_dir])\n            self.assertEqual(ret, 0)\n\n            self.assertFalse(os.path.exists(os.path.join(\".dvc\", \"cache\")))\n\n            with open(\"common\", \"w+\") as fd:\n                fd.write(\"common\")\n\n            with open(\"unique\", \"w+\") as fd:\n                fd.write(d)\n\n            ret = main([\"add\", \"common\", \"unique\"])\n            self.assertEqual(ret, 0)\n\n            os.chdir(\"..\")\n\n        self.assertFalse(os.path.exists(os.path.join(\"dir1\", \".dvc\", \"cache\")))\n        self.assertFalse(os.path.exists(os.path.join(\"dir2\", \".dvc\", \"cache\")))\n\n        subdirs = list(\n            filter(\n                lambda x: os.path.isdir(os.path.join(cache_dir, x)),\n                os.listdir(cache_dir),\n            )\n        )\n        self.assertEqual(len(subdirs), 3)\n        self.assertEqual(\n            len(os.listdir(os.path.join(cache_dir, subdirs[0]))), 1\n        )\n        self.assertEqual(\n            len(os.listdir(os.path.join(cache_dir, subdirs[1]))), 1\n        )\n        self.assertEqual(\n            len(os.listdir(os.path.join(cache_dir, subdirs[2]))), 1\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckout_TestCheckout._test_checkout.self_assertTrue_filecmp_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckout_TestCheckout._test_checkout.self_assertTrue_filecmp_c", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 34, "end_line": 57, "span_ids": ["TestCheckout._test_checkout", "TestCheckout.setUp", "TestCheckout.test", "TestCheckout"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckout(TestRepro):\n    def setUp(self):\n        super().setUp()\n\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        self.data_dir_stage = stages[0]\n        self.assertTrue(self.data_dir_stage is not None)\n\n        self.orig = \"orig\"\n        shutil.copy(self.FOO, self.orig)\n        os.unlink(self.FOO)\n\n        self.orig_dir = \"orig_dir\"\n        shutil.copytree(self.DATA_DIR, self.orig_dir)\n        shutil.rmtree(self.DATA_DIR)\n\n    def test(self):\n        self.dvc.checkout(force=True)\n        self._test_checkout()\n\n    def _test_checkout(self):\n        self.assertTrue(os.path.isfile(self.FOO))\n        self.assertTrue(filecmp.cmp(self.FOO, self.orig, shallow=False))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutSingleStage_TestCheckoutCorruptedCacheFile.test.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutSingleStage_TestCheckoutCorruptedCacheFile.test.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 60, "end_line": 83, "span_ids": ["TestCheckoutCorruptedCacheFile", "TestCheckoutCorruptedCacheFile.test", "TestCheckoutSingleStage", "TestCheckoutSingleStage.test"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutSingleStage(TestCheckout):\n    def test(self):\n        ret = main([\"checkout\", \"--force\", self.foo_stage.path])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"checkout\", \"--force\", self.data_dir_stage.path])\n        self.assertEqual(ret, 0)\n\n        self._test_checkout()\n\n\nclass TestCheckoutCorruptedCacheFile(TestRepro):\n    def test(self):\n        cache = self.foo_stage.outs[0].cache_path\n\n        os.chmod(cache, 0o644)\n        with open(cache, \"a\") as fd:\n            fd.write(\"1\")\n\n        with pytest.raises(CheckoutError):\n            self.dvc.checkout(force=True)\n\n        self.assertFalse(os.path.isfile(self.FOO))\n        self.assertFalse(os.path.isfile(cache))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutCorruptedCacheDir_TestCheckoutCorruptedCacheDir.test.self_assertFalse_os_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutCorruptedCacheDir_TestCheckoutCorruptedCacheDir.test.self_assertFalse_os_path_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 89, "end_line": 117, "span_ids": ["TestCheckoutCorruptedCacheDir.test", "TestCheckoutCorruptedCacheDir"], "tokens": 248}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutCorruptedCacheDir(TestDvc):\n    def test(self):\n        # NOTE: using 'copy' so that cache and link don't have same inode\n        ret = main([\"config\", \"cache.type\", \"copy\"])\n        self.assertEqual(ret, 0)\n\n        self.dvc = DvcRepo(\".\")\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        self.assertEqual(len(stages[0].outs), 1)\n        out = stages[0].outs[0]\n\n        # NOTE: modifying cache file for one of the files inside the directory\n        # to check if dvc will detect that the cache is corrupted.\n        _, entry_hash = next(\n            self.dvc.cache.local.load_dir_cache(out.hash_info).items()\n        )\n        cache = os.fspath(\n            self.dvc.cache.local.tree.hash_to_path_info(entry_hash.value)\n        )\n\n        os.chmod(cache, 0o644)\n        with open(cache, \"w+\") as fobj:\n            fobj.write(\"1\")\n\n        with pytest.raises(CheckoutError):\n            self.dvc.checkout(force=True)\n\n        self.assertFalse(os.path.exists(cache))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCmdCheckout_CheckoutBase.outs_info.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCmdCheckout_CheckoutBase.outs_info.return._", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 114, "end_line": 148, "span_ids": ["TestCmdCheckout", "CheckoutBase", "CheckoutBase.outs_info", "CheckoutBase.commit_data_file", "TestCmdCheckout.test", "CheckoutBase.read_ignored"], "tokens": 250}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCmdCheckout(TestCheckout):\n    def test(self):\n        ret = main([\"checkout\", \"--force\"])\n        self.assertEqual(ret, 0)\n        self._test_checkout()\n\n\nclass CheckoutBase(TestDvcGit):\n    GIT_IGNORE = \".gitignore\"\n\n    def commit_data_file(self, fname, content=\"random text\"):\n        with open(fname, \"w\") as fd:\n            fd.write(content)\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n        self.dvc.scm.add([fname + \".dvc\", \".gitignore\"])\n        self.dvc.scm.commit(\"adding \" + fname)\n\n    def read_ignored(self):\n        with open(self.GIT_IGNORE) as f:\n            return [s.strip(\"\\n\") for s in f.readlines()]\n\n    def outs_info(self, stage):\n        FileInfo = collections.namedtuple(\"FileInfo\", \"path inode\")\n\n        paths = [\n            path\n            for output in stage[\"outs\"]\n            for path in self.dvc.tree.walk_files(output[\"path\"])\n        ]\n\n        return [\n            FileInfo(path=path, inode=System.inode(path)) for path in paths\n        ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestRemoveFilesWhenCheckout_TestRemoveFilesWhenCheckout.test.self_assertFalse_os_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestRemoveFilesWhenCheckout_TestRemoveFilesWhenCheckout.test.self_assertFalse_os_path_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 147, "end_line": 170, "span_ids": ["TestRemoveFilesWhenCheckout.test", "TestRemoveFilesWhenCheckout"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRemoveFilesWhenCheckout(CheckoutBase):\n    def test(self):\n        fname = \"file_in_a_branch\"\n        branch_master = \"master\"\n        branch_1 = \"b1\"\n\n        self.dvc.scm.add(self.dvc.scm.untracked_files())\n        self.dvc.scm.commit(\"add all files\")\n\n        # add the file into a separate branch\n        self.dvc.scm.checkout(branch_1, True)\n        ret = main([\"checkout\", \"--force\"])\n        self.assertEqual(ret, 0)\n        self.commit_data_file(fname)\n\n        # Checkout back in master\n        self.dvc.scm.checkout(branch_master)\n        self.assertTrue(os.path.exists(fname))\n\n        # Make sure `dvc checkout` removes the file\n        # self.dvc.checkout()\n        ret = main([\"checkout\", \"--force\"])\n        self.assertEqual(ret, 0)\n        self.assertFalse(os.path.exists(fname))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutCleanWorkingDir_TestCheckoutCleanWorkingDir.test.self_assertFalse_os_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutCleanWorkingDir_TestCheckoutCleanWorkingDir.test.self_assertFalse_os_path_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 173, "end_line": 187, "span_ids": ["TestCheckoutCleanWorkingDir.test", "TestCheckoutCleanWorkingDir"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutCleanWorkingDir(CheckoutBase):\n    @patch(\"dvc.prompt.confirm\", return_value=True)\n    def test(self, mock_prompt):\n        mock_prompt.return_value = True\n\n        stages = self.dvc.add(self.DATA_DIR)\n        stage = stages[0]\n\n        working_dir_change = os.path.join(self.DATA_DIR, \"not_cached.txt\")\n        with open(working_dir_change, \"w\") as f:\n            f.write(\"not_cached\")\n\n        ret = main([\"checkout\", stage.relpath])\n        self.assertEqual(ret, 0)\n        self.assertFalse(os.path.exists(working_dir_change))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutCleanWorkingDir.test_force_TestCheckoutCleanWorkingDir.test_force.self_assertRaises_DvcExce": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutCleanWorkingDir.test_force_TestCheckoutCleanWorkingDir.test_force.self_assertRaises_DvcExce", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 189, "end_line": 206, "span_ids": ["TestCheckoutCleanWorkingDir.test_force"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutCleanWorkingDir(CheckoutBase):\n\n    @patch(\"dvc.prompt.confirm\", return_value=False)\n    def test_force(self, mock_prompt):\n        mock_prompt.return_value = False\n\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        stage = stages[0]\n\n        working_dir_change = os.path.join(self.DATA_DIR, \"not_cached.txt\")\n        with open(working_dir_change, \"w\") as f:\n            f.write(\"not_cached\")\n\n        ret = main([\"checkout\", stage.relpath])\n        self.assertNotEqual(ret, 0)\n\n        mock_prompt.assert_called()\n        self.assertNotEqual(ret, 0)\n        self.assertRaises(DvcException)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutSelectiveRemove_TestCheckoutSelectiveRemove.test.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutSelectiveRemove_TestCheckoutSelectiveRemove.test.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 215, "end_line": 241, "span_ids": ["TestCheckoutSelectiveRemove.test", "TestCheckoutSelectiveRemove"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutSelectiveRemove(CheckoutBase):\n    def test(self):\n        # Use copy to test for changes in the inodes\n        ret = main([\"config\", \"cache.type\", \"copy\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.DATA_DIR])\n        self.assertEqual(0, ret)\n\n        stage_path = self.DATA_DIR + DVC_FILE_SUFFIX\n        stage = load_yaml(stage_path)\n        staged_files = self.outs_info(stage)\n\n        # move instead of remove, to lock inode assigned to stage_files[0].path\n        # if we were to use remove, we might end up with same inode assigned to\n        # newly checked out file\n        shutil.move(staged_files[0].path, \"random_name\")\n\n        ret = main([\"checkout\", \"--force\", stage_path])\n        self.assertEqual(ret, 0)\n\n        checkedout_files = self.outs_info(stage)\n\n        self.assertEqual(len(staged_files), len(checkedout_files))\n        self.assertEqual(staged_files[0].path, checkedout_files[0].path)\n        self.assertNotEqual(staged_files[0].inode, checkedout_files[0].inode)\n        self.assertEqual(staged_files[1].inode, checkedout_files[1].inode)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestGitIgnoreBasic_TestGitIgnoreBasic.test.None_9": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestGitIgnoreBasic_TestGitIgnoreBasic.test.None_9", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 244, "end_line": 271, "span_ids": ["TestGitIgnoreBasic.test", "TestGitIgnoreBasic"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGitIgnoreBasic(CheckoutBase):\n    def test(self):\n        fname1 = \"file_1\"\n        fname2 = \"file_2\"\n        fname3 = \"file_3\"\n\n        self.dvc.scm.add(self.dvc.scm.untracked_files())\n        self.dvc.scm.commit(\"add all files\")\n\n        self.assertFalse(os.path.exists(self.GIT_IGNORE))\n\n        self.commit_data_file(fname1)\n        self.commit_data_file(fname2)\n        self.dvc.run(\n            single_stage=True,\n            cmd=f\"python {self.CODE} {self.FOO} {fname3}\",\n            deps=[self.CODE, self.FOO],\n            outs_no_cache=[fname3],\n        )\n\n        self.assertTrue(os.path.exists(self.GIT_IGNORE))\n\n        ignored = self.read_ignored()\n\n        self.assertEqual(len(ignored), 2)\n\n        self.assertIn(\"/\" + fname1, ignored)\n        self.assertIn(\"/\" + fname2, ignored)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestGitIgnoreWhenCheckout_TestGitIgnoreWhenCheckout.test.None_12": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestGitIgnoreWhenCheckout_TestGitIgnoreWhenCheckout.test.None_12", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 267, "end_line": 296, "span_ids": ["TestGitIgnoreWhenCheckout.test", "TestGitIgnoreWhenCheckout"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGitIgnoreWhenCheckout(CheckoutBase):\n    def test(self):\n        fname_master = \"file_in_a_master\"\n        branch_master = \"master\"\n        fname_branch = \"file_in_a_branch\"\n        branch_1 = \"b1\"\n\n        self.dvc.scm.add(self.dvc.scm.untracked_files())\n        self.dvc.scm.commit(\"add all files\")\n        self.commit_data_file(fname_master)\n\n        self.dvc.scm.checkout(branch_1, True)\n        ret = main([\"checkout\", \"--force\"])\n        self.assertEqual(ret, 0)\n        self.commit_data_file(fname_branch)\n\n        self.dvc.scm.checkout(branch_master)\n        ret = main([\"checkout\", \"--force\"])\n        self.assertEqual(ret, 0)\n\n        ignored = self.read_ignored()\n\n        self.assertEqual(len(ignored), 1)\n        self.assertIn(\"/\" + fname_master, ignored)\n\n        self.dvc.scm.checkout(branch_1)\n        ret = main([\"checkout\", \"--force\"])\n        self.assertEqual(ret, 0)\n        ignored = self.read_ignored()\n        self.assertIn(\"/\" + fname_branch, ignored)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutMissingMd5InStageFile_TestCheckoutEmptyDir.test.self_assertEqual_len_os_l": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutMissingMd5InStageFile_TestCheckoutEmptyDir.test.self_assertEqual_len_os_l", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 309, "end_line": 338, "span_ids": ["TestCheckoutMissingMd5InStageFile.test", "TestCheckoutEmptyDir.test", "TestCheckoutEmptyDir", "TestCheckoutMissingMd5InStageFile"], "tokens": 228}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutMissingMd5InStageFile(TestRepro):\n    def test(self):\n        d = load_yaml(self.file1_stage)\n        del d[Stage.PARAM_OUTS][0][LocalTree.PARAM_CHECKSUM]\n        del d[Stage.PARAM_DEPS][0][LocalTree.PARAM_CHECKSUM]\n        dump_yaml(self.file1_stage, d)\n\n        with pytest.raises(CheckoutError):\n            self.dvc.checkout(force=True)\n\n\nclass TestCheckoutEmptyDir(TestDvc):\n    def test(self):\n        dname = \"empty_dir\"\n        os.mkdir(dname)\n\n        stages = self.dvc.add(dname)\n        self.assertEqual(len(stages), 1)\n        stage = stages[0]\n        self.assertTrue(stage is not None)\n        self.assertEqual(len(stage.outs), 1)\n\n        stage.outs[0].remove()\n        self.assertFalse(os.path.exists(dname))\n\n        stats = self.dvc.checkout(force=True)\n        assert stats[\"added\"] == [dname + os.sep]\n\n        self.assertTrue(os.path.isdir(dname))\n        self.assertEqual(len(os.listdir(dname)), 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutNotCachedFile_TestCheckoutDirectory.test.self_assertTrue_os_path_e": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutNotCachedFile_TestCheckoutDirectory.test.self_assertTrue_os_path_e", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 339, "end_line": 381, "span_ids": ["TestCheckoutWithDeps", "TestCheckoutNotCachedFile.test", "TestCheckoutNotCachedFile", "TestCheckoutDirectory", "TestCheckoutDirectory.test", "TestCheckoutWithDeps.test"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutNotCachedFile(TestDvc):\n    def test(self):\n        cmd = \"python {} {} {}\".format(self.CODE, self.FOO, \"out\")\n\n        self.dvc.add(self.FOO)\n        stage = self.dvc.run(\n            cmd=cmd,\n            deps=[self.FOO, self.CODE],\n            outs_no_cache=[\"out\"],\n            single_stage=True,\n        )\n        self.assertTrue(stage is not None)\n\n        stats = self.dvc.checkout(force=True)\n        assert not any(stats.values())\n\n\nclass TestCheckoutWithDeps(TestRepro):\n    def test(self):\n        os.unlink(self.FOO)\n        os.unlink(self.file1)\n\n        self.assertFalse(os.path.exists(self.FOO))\n        self.assertFalse(os.path.exists(self.file1))\n\n        ret = main([\"checkout\", \"--force\", self.file1_stage, \"--with-deps\"])\n        self.assertEqual(ret, 0)\n\n        self.assertTrue(os.path.exists(self.FOO))\n        self.assertTrue(os.path.exists(self.file1))\n\n\nclass TestCheckoutDirectory(TestRepro):\n    def test(self):\n        stage = self.dvc.add(self.DATA_DIR)[0]\n\n        shutil.rmtree(self.DATA_DIR)\n        self.assertFalse(os.path.exists(self.DATA_DIR))\n\n        ret = main([\"checkout\", stage.path])\n        self.assertEqual(ret, 0)\n\n        self.assertTrue(os.path.exists(self.DATA_DIR))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutHook_TestCheckoutHook.test.with_self_assertRaises_Co.self_dvc_checkout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutHook_TestCheckoutHook.test.with_self_assertRaises_Co.self_dvc_checkout_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 385, "end_line": 400, "span_ids": ["TestCheckoutHook", "TestCheckoutHook.test"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutHook(TestDvc):\n    @patch(\"sys.stdout.isatty\", return_value=True)\n    @patch(\"dvc.prompt.input\", side_effect=EOFError)\n    def test(self, _mock_input, _mock_isatty):\n        \"\"\" Test that dvc checkout handles EOFError gracefully, which is what\n        it will experience when running in a git hook.\n        \"\"\"\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        stage = stages[0]\n        self.assertNotEqual(stage, None)\n\n        self.create(os.path.join(self.DATA_DIR, \"test\"), \"test\")\n\n        with self.assertRaises(ConfirmRemoveError):\n            self.dvc.checkout()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_os_TestArgParse.test.self_assertIsInstance_arg": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_os_TestArgParse.test.self_assertIsInstance_arg", "embedding": null, "metadata": {"file_path": "tests/func/test_cli.py", "file_name": "test_cli.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["imports", "TestArgParse", "TestArgParse.test"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.cli import parse_args\nfrom dvc.command.add import CmdAdd\nfrom dvc.command.base import CmdBase\nfrom dvc.command.checkout import CmdCheckout\nfrom dvc.command.config import CmdConfig\nfrom dvc.command.data_sync import CmdDataPull, CmdDataPush\nfrom dvc.command.gc import CmdGC\nfrom dvc.command.init import CmdInit\nfrom dvc.command.remove import CmdRemove\nfrom dvc.command.repro import CmdRepro\nfrom dvc.command.run import CmdRun\nfrom dvc.command.status import CmdDataStatus\nfrom dvc.exceptions import DvcException, DvcParserError\nfrom tests.basic_env import TestDvc\n\n\nclass TestArgParse(TestDvc):\n    def test(self):\n        args = parse_args([\"init\"])\n        self.assertIsInstance(args.func(args), CmdInit)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestRun_TestRun.test.self_assertEqual_args_com": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestRun_TestRun.test.self_assertEqual_args_com", "embedding": null, "metadata": {"file_path": "tests/func/test_cli.py", "file_name": "test_cli.py", "file_type": "text/x-python", "category": "test", "start_line": 25, "end_line": 69, "span_ids": ["TestRun.test", "TestRun"], "tokens": 268}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRun(TestDvc):\n    def test(self):\n        dep1 = \"dep1\"\n        dep2 = \"dep2\"\n\n        out1 = \"out1\"\n        out2 = \"out2\"\n\n        out_no_cache1 = \"out_no_cache1\"\n        out_no_cache2 = \"out_no_cache2\"\n\n        fname = \"dvc.dvc\"\n        cmd = \"cmd\"\n        arg1 = \"arg1\"\n        arg2 = \"arg2\"\n\n        args = parse_args(\n            [\n                \"run\",\n                \"-d\",\n                dep1,\n                \"--deps\",\n                dep2,\n                \"-o\",\n                out1,\n                \"--outs\",\n                out2,\n                \"-O\",\n                out_no_cache1,\n                \"--outs-no-cache\",\n                out_no_cache2,\n                \"--file\",\n                fname,\n                cmd,\n                arg1,\n                arg2,\n            ]\n        )\n\n        self.assertIsInstance(args.func(args), CmdRun)\n        self.assertEqual(args.deps, [dep1, dep2])\n        self.assertEqual(args.outs, [out1, out2])\n        self.assertEqual(args.outs_no_cache, [out_no_cache1, out_no_cache2])\n        self.assertEqual(args.file, fname)\n        self.assertEqual(args.command, [cmd, arg1, arg2])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_TestGCBranchesTags_TestGCBranchesTags.test.self__check_cache_1_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_TestGCBranchesTags_TestGCBranchesTags.test.self__check_cache_1_", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 52, "end_line": 109, "span_ids": ["TestGCBranchesTags.test", "TestGCBranchesTags", "TestGCBranchesTags._check_cache"], "tokens": 495}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGCBranchesTags(TestDvcGit):\n    def _check_cache(self, num):\n        total = 0\n        for _, _, files in os.walk(os.path.join(\".dvc\", \"cache\")):\n            total += len(files)\n        self.assertEqual(total, num)\n\n    def test(self):\n        fname = \"file\"\n\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"v1.0\")\n\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n        self.dvc.scm.add([\".gitignore\", stages[0].relpath])\n        self.dvc.scm.commit(\"v1.0\")\n        self.dvc.scm.tag(\"v1.0\")\n\n        self.dvc.scm.checkout(\"test\", create_new=True)\n        self.dvc.remove(stages[0].relpath)\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"test\")\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n        self.dvc.scm.add([\".gitignore\", stages[0].relpath])\n        self.dvc.scm.commit(\"test\")\n\n        self.dvc.scm.checkout(\"master\")\n        self.dvc.remove(stages[0].relpath)\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"trash\")\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n        self.dvc.scm.add([\".gitignore\", stages[0].relpath])\n        self.dvc.scm.commit(\"trash\")\n\n        self.dvc.remove(stages[0].relpath)\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"master\")\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n        self.dvc.scm.add([\".gitignore\", stages[0].relpath])\n        self.dvc.scm.commit(\"master\")\n\n        self._check_cache(4)\n\n        self.dvc.gc(all_tags=True, all_branches=True)\n\n        self._check_cache(3)\n\n        self.dvc.gc(all_tags=False, all_branches=True)\n\n        self._check_cache(2)\n\n        self.dvc.gc(all_tags=True, all_branches=False)\n\n        self._check_cache(1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_TestGCMultipleDvcRepos_TestGCMultipleDvcRepos.setUp.self.additional_dvc_7.DvcRepo_self_additional_p": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_TestGCMultipleDvcRepos_TestGCMultipleDvcRepos.setUp.self.additional_dvc_7.DvcRepo_self_additional_p", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 112, "end_line": 134, "span_ids": ["TestGCMultipleDvcRepos", "TestGCMultipleDvcRepos.setUp", "TestGCMultipleDvcRepos._check_cache"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGCMultipleDvcRepos(TestDvcGit):\n    def _check_cache(self, num):\n        total = 0\n        for _, _, files in os.walk(os.path.join(\".dvc\", \"cache\")):\n            total += len(files)\n        self.assertEqual(total, num)\n\n    def setUp(self):\n        super().setUp()\n        self.additional_path = TestDir.mkdtemp()\n        self.additional_git = Repo.init(self.additional_path)\n        self.additional_dvc = DvcRepo.init(self.additional_path)\n\n        cache_path = os.path.join(self._root_dir, \".dvc\", \"cache\")\n        config_path = os.path.join(\n            self.additional_path, \".dvc\", \"config.local\"\n        )\n        cfg = configobj.ConfigObj()\n        cfg.filename = config_path\n        cfg[\"cache\"] = {\"dir\": cache_path}\n        cfg.write()\n\n        self.additional_dvc = DvcRepo(self.additional_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_os_TestMoveNotDataSource.test.self_assertNotEqual_ret_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_os_TestMoveNotDataSource.test.self_assertNotEqual_ret_", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 61, "span_ids": ["TestMove", "TestMoveNotDataSource", "TestMoveNonExistentFile", "imports", "TestCmdMove.test", "TestMoveNotDataSource.test", "TestMove.test", "TestMoveNonExistentFile.test", "TestMoveDirectory.test", "TestMoveDirectory", "TestCmdMove"], "tokens": 435}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.dvcfile import DVC_FILE_SUFFIX\nfrom dvc.exceptions import DvcException, MoveNotDataSourceError\nfrom dvc.main import main\nfrom dvc.utils.serialize import load_yaml\nfrom tests.basic_env import TestDvc, TestDvcGit\nfrom tests.func.test_repro import TestRepro\nfrom tests.utils import cd\n\n\nclass TestMove(TestDvc):\n    def test(self):\n        dst = self.FOO + \"1\"\n        self.dvc.add(self.FOO)\n        self.dvc.move(self.FOO, dst)\n\n        self.assertFalse(os.path.isfile(self.FOO))\n        self.assertTrue(os.path.isfile(dst))\n\n\nclass TestMoveNonExistentFile(TestDvc):\n    def test(self):\n        with self.assertRaises(DvcException):\n            self.dvc.move(\"non_existent_file\", \"dst\")\n\n\nclass TestMoveDirectory(TestDvc):\n    def test(self):\n        dst = \"dst\"\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n        self.dvc.move(self.DATA_DIR, dst)\n        self.assertFalse(os.path.exists(self.DATA_DIR))\n        self.assertTrue(os.path.exists(dst))\n\n\nclass TestCmdMove(TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n        ret = main([\"move\", self.FOO, self.FOO + \"1\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"move\", \"non-existing-file\", \"dst\"])\n        self.assertNotEqual(ret, 0)\n\n\nclass TestMoveNotDataSource(TestRepro):\n    def test(self):\n        from dvc.repo import Repo as DvcRepo\n\n        self.dvc = DvcRepo(self._root_dir)\n        with self.assertRaises(MoveNotDataSourceError):\n            self.dvc.move(self.file1, \"dst\")\n\n        ret = main([\"move\", self.file1, \"dst\"])\n        self.assertNotEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileWithExtension_TestMoveFileWithExtension.test.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileWithExtension_TestMoveFileWithExtension.test.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 65, "end_line": 81, "span_ids": ["TestMoveFileWithExtension", "TestMoveFileWithExtension.test"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMoveFileWithExtension(TestDvc):\n    def test(self):\n        with open(os.path.join(self.dvc.root_dir, \"file.csv\"), \"w\") as fd:\n            fd.write(\"1,2,3\\n\")\n\n        self.dvc.add(\"file.csv\")\n\n        self.assertTrue(os.path.exists(\"file.csv\"))\n        self.assertTrue(os.path.exists(\"file.csv.dvc\"))\n\n        ret = main([\"move\", \"file.csv\", \"other_name.csv\"])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.path.exists(\"file.csv\"))\n        self.assertFalse(os.path.exists(\"file.csv.dvc\"))\n        self.assertTrue(os.path.exists(\"other_name.csv\"))\n        self.assertTrue(os.path.exists(\"other_name.csv.dvc\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileToDirectory_TestMoveFileToDirectory.test.None_6": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileToDirectory_TestMoveFileToDirectory.test.None_6", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 85, "end_line": 100, "span_ids": ["TestMoveFileToDirectory.test", "TestMoveFileToDirectory"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMoveFileToDirectory(TestDvc):\n    def test(self):\n        foo_dvc_file = self.FOO + DVC_FILE_SUFFIX\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.exists(foo_dvc_file))\n\n        new_foo_path = os.path.join(self.DATA_DIR, self.FOO)\n        new_foo_dvc_path = new_foo_path + DVC_FILE_SUFFIX\n        ret = main([\"move\", self.FOO, new_foo_path])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.path.exists(self.FOO))\n        self.assertFalse(os.path.exists(foo_dvc_file))\n        self.assertTrue(os.path.exists(new_foo_path))\n        self.assertTrue(os.path.exists(new_foo_dvc_path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileToDirectoryWithoutSpecifiedTargetName_TestMoveFileToDirectoryWithoutSpecifiedTargetName.test.self_assertEqual_self_FOO": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileToDirectoryWithoutSpecifiedTargetName_TestMoveFileToDirectoryWithoutSpecifiedTargetName.test.self_assertEqual_self_FOO", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 101, "end_line": 121, "span_ids": ["TestMoveFileToDirectoryWithoutSpecifiedTargetName", "TestMoveFileToDirectoryWithoutSpecifiedTargetName.test"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMoveFileToDirectoryWithoutSpecifiedTargetName(TestDvc):\n    def test(self):\n        foo_stage_file_path = self.FOO + DVC_FILE_SUFFIX\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.exists(foo_stage_file_path))\n\n        target_foo_path = os.path.join(self.DATA_DIR, self.FOO)\n        target_foo_stage_file_path = target_foo_path + DVC_FILE_SUFFIX\n\n        ret = main([\"move\", self.FOO, self.DATA_DIR])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.path.exists(self.FOO))\n        self.assertFalse(os.path.exists(foo_stage_file_path))\n\n        self.assertTrue(os.path.exists(target_foo_path))\n        self.assertTrue(os.path.exists(target_foo_stage_file_path))\n\n        new_stage = load_yaml(target_foo_stage_file_path)\n        self.assertEqual(self.FOO, new_stage[\"outs\"][0][\"path\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveDirectoryShouldNotOverwriteExisting_TestMoveDirectoryShouldNotOverwriteExisting.test.self_assertEqual_set_os_l": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveDirectoryShouldNotOverwriteExisting_TestMoveDirectoryShouldNotOverwriteExisting.test.self_assertEqual_set_os_l", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 124, "end_line": 148, "span_ids": ["TestMoveDirectoryShouldNotOverwriteExisting", "TestMoveDirectoryShouldNotOverwriteExisting.test"], "tokens": 189}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMoveDirectoryShouldNotOverwriteExisting(TestDvcGit):\n    def test(self):\n        dir_name = \"dir\"\n        orig_listdir = set(os.listdir(self.DATA_DIR))\n\n        self.dvc.add(self.DATA_DIR)\n\n        os.mkdir(dir_name)\n        new_dir_name = os.path.join(dir_name, self.DATA_DIR)\n\n        self.dvc.move(self.DATA_DIR, dir_name)\n\n        data_dir_stage = self.DATA_DIR + DVC_FILE_SUFFIX\n        self.assertFalse(os.path.exists(self.DATA_DIR))\n        self.assertFalse(os.path.exists(data_dir_stage))\n\n        self.assertTrue(os.path.exists(dir_name))\n        self.assertEqual(\n            set(os.listdir(dir_name)),\n            {\".gitignore\", data_dir_stage, self.DATA_DIR},\n        )\n\n        self.assertTrue(os.path.exists(new_dir_name))\n        self.assertTrue(os.path.isfile(new_dir_name + DVC_FILE_SUFFIX))\n        self.assertEqual(set(os.listdir(new_dir_name)), orig_listdir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileBetweenDirectories_TestMoveFileBetweenDirectories.test.self_assertEqual_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileBetweenDirectories_TestMoveFileBetweenDirectories.test.self_assertEqual_", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 151, "end_line": 176, "span_ids": ["TestMoveFileBetweenDirectories.test", "TestMoveFileBetweenDirectories"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMoveFileBetweenDirectories(TestDvc):\n    def test(self):\n        data_stage_file = self.DATA + DVC_FILE_SUFFIX\n        ret = main([\"add\", self.DATA])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.exists(data_stage_file))\n\n        new_data_dir = \"data_dir2\"\n        os.makedirs(new_data_dir)\n\n        ret = main([\"move\", self.DATA, new_data_dir])\n        self.assertEqual(ret, 0)\n\n        new_data_path = os.path.join(new_data_dir, os.path.basename(self.DATA))\n        new_data_stage_file = new_data_path + DVC_FILE_SUFFIX\n\n        self.assertFalse(os.path.exists(self.DATA))\n        self.assertFalse(os.path.exists(data_stage_file))\n\n        self.assertTrue(os.path.exists(new_data_path))\n        self.assertTrue(os.path.exists(new_data_stage_file))\n\n        new_stage_file = load_yaml(new_data_stage_file)\n        self.assertEqual(\n            os.path.basename(self.DATA), new_stage_file[\"outs\"][0][\"path\"]\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_output.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_output.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/func/test_output.py", "file_name": "test_output.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 37, "span_ids": ["imports", "test_scheme", "_get_out"], "tokens": 293}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.output import OUTS_MAP, _get\nfrom dvc.stage import Stage\nfrom tests import PY39, PYARROW_NOT_AVAILABLE\n\nMARKERS = [\n    pytest.mark.skipif(PY39, reason=PYARROW_NOT_AVAILABLE),\n    pytest.mark.hdfs,\n]\n\nTESTS = [\n    (\"s3://bucket/path\", \"s3\"),\n    (\"gs://bucket/path\", \"gs\"),\n    (\"ssh://example.com:/dir/path\", \"ssh\"),\n    (\"path/to/file\", \"local\"),\n    (\"path\\\\to\\\\file\", \"local\"),\n    (\"file\", \"local\"),\n    (\"./file\", \"local\"),\n    (\".\\\\file\", \"local\"),\n    (\"../file\", \"local\"),\n    (\"..\\\\file\", \"local\"),\n    (\"unknown://path\", \"local\"),\n    pytest.param(\"hdfs://example.com/dir/path\", \"hdfs\", marks=MARKERS),\n    pytest.param(\"hdfs://example.com/dir/path\", \"hdfs\", marks=MARKERS),\n]\n\n\ndef _get_out(dvc, path):\n    return _get(Stage(dvc), path, None, None, None, None)\n\n\n@pytest.mark.parametrize(\"url,scheme\", TESTS)\ndef test_scheme(dvc, url, scheme):\n    # pylint: disable=unidiomatic-typecheck\n    assert type(_get_out(dvc, url)) == OUTS_MAP[scheme]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_TestRemote.test_overwrite_TestRemote.test_referencing_other_remotes.assert_config_remote_ba": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_TestRemote.test_overwrite_TestRemote.test_referencing_other_remotes.assert_config_remote_ba", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 52, "end_line": 66, "span_ids": ["TestRemote.test_overwrite", "TestRemote.test_referencing_other_remotes"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRemote(TestDvc):\n\n    def test_overwrite(self):\n        remote_name = \"a\"\n        remote_url = \"s3://bucket/name\"\n        self.assertEqual(main([\"remote\", \"add\", remote_name, remote_url]), 0)\n        self.assertEqual(main([\"remote\", \"add\", remote_name, remote_url]), 251)\n        self.assertEqual(\n            main([\"remote\", \"add\", \"-f\", remote_name, remote_url]), 0\n        )\n\n    def test_referencing_other_remotes(self):\n        assert main([\"remote\", \"add\", \"foo\", \"ssh://localhost/\"]) == 0\n        assert main([\"remote\", \"add\", \"bar\", \"remote://foo/dvc-storage\"]) == 0\n\n        config = configobj.ConfigObj(self.dvc.config.files[\"repo\"])\n        assert config['remote \"bar\"'][\"url\"] == \"remote://foo/dvc-storage\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_TestRemoteRemove_TestRemoteDefault.test.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_TestRemoteRemove_TestRemoteDefault.test.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 90, "end_line": 120, "span_ids": ["TestRemoteDefault.test", "TestRemoteRemove", "TestRemoteDefault", "TestRemoteRemove.test"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRemoteRemove(TestDvc):\n    def test(self):\n        ret = main([\"config\", \"core.checksum_jobs\", \"1\"])\n        self.assertEqual(ret, 0)\n\n        remote = \"mys3\"\n        ret = main([\"remote\", \"add\", remote, \"s3://bucket/name\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"remote\", \"remove\", remote])\n        self.assertEqual(ret, 0)\n\n\nclass TestRemoteDefault(TestDvc):\n    def test(self):\n        remote = \"mys3\"\n        ret = main([\"remote\", \"add\", \"mys3\", \"s3://bucket/path\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"remote\", \"default\", \"mys3\"])\n        self.assertEqual(ret, 0)\n        config_file = os.path.join(self.dvc.dvc_dir, Config.CONFIG)\n        config = configobj.ConfigObj(config_file)\n        default = config[\"core\"][\"remote\"]\n        self.assertEqual(default, remote)\n\n        ret = main([\"remote\", \"default\", \"--unset\"])\n        self.assertEqual(ret, 0)\n        config = configobj.ConfigObj(config_file)\n        default = config.get(\"core\", {}).get(\"remote\")\n        self.assertEqual(default, None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestRepro_TestReproFail.test.self_assertNotEqual_ret_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestRepro_TestReproFail.test.self_assertNotEqual_ret_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 62, "end_line": 87, "span_ids": ["TestRepro.setUp", "TestRepro", "TestReproFail.test", "TestReproFail"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRepro(SingleStageRun, TestDvc):\n    def setUp(self):\n        super().setUp()\n\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        self.foo_stage = stages[0]\n        self.assertTrue(self.foo_stage is not None)\n\n        self.file1 = \"file1\"\n        self.file1_stage = self.file1 + \".dvc\"\n        self.stage = self._run(\n            fname=self.file1_stage,\n            outs=[self.file1],\n            deps=[self.FOO, self.CODE],\n            cmd=f\"python {self.CODE} {self.FOO} {self.file1}\",\n            name=\"run1\",\n        )\n\n\nclass TestReproFail(TestRepro):\n    def test(self):\n        os.unlink(self.CODE)\n\n        ret = main([\"repro\", self._get_stage_target(self.stage)])\n        self.assertNotEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproCyclicGraph_TestReproCyclicGraph.test.with_self_assertRaises_Cy.self_dvc_reproduce_cycle": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproCyclicGraph_TestReproCyclicGraph.test.with_self_assertRaises_Cy.self_dvc_reproduce_cycle", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 90, "end_line": 114, "span_ids": ["TestReproCyclicGraph.test", "TestReproCyclicGraph"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproCyclicGraph(SingleStageRun, TestDvc):\n    def test(self):\n        self._run(\n            deps=[self.FOO],\n            outs=[\"bar.txt\"],\n            cmd=\"echo bar > bar.txt\",\n            name=\"copybarbar-txt\",\n        )\n\n        self._run(\n            deps=[\"bar.txt\"],\n            outs=[\"baz.txt\"],\n            cmd=\"echo baz > baz.txt\",\n            name=\"copybazbaz-txt\",\n        )\n\n        stage_dump = {\n            \"cmd\": \"echo baz > foo\",\n            \"deps\": [{\"path\": \"baz.txt\"}],\n            \"outs\": [{\"path\": self.FOO}],\n        }\n        dump_yaml(\"cycle.dvc\", stage_dump)\n\n        with self.assertRaises(CyclicGraphError):\n            self.dvc.reproduce(\"cycle.dvc\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproWorkingDirectoryAsOutput_TestReproWorkingDirectoryAsOutput.test.with_self_assertRaises_St.self_dvc_reproduce_faulty": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproWorkingDirectoryAsOutput_TestReproWorkingDirectoryAsOutput.test.with_self_assertRaises_St.self_dvc_reproduce_faulty", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 117, "end_line": 155, "span_ids": ["TestReproWorkingDirectoryAsOutput.test", "TestReproWorkingDirectoryAsOutput"], "tokens": 341}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproWorkingDirectoryAsOutput(TestDvc):\n    \"\"\"\n    |  stage.cwd  |  out.path | cwd as output |\n    |:-----------:|:---------:|:-------------:|\n    |     dir     |    dir    |      True     |\n    | dir/subdir/ |    dir    |      True     |\n    |     dir     |   dir-1   |     False     |\n    |      .      | something |     False     |\n    \"\"\"\n\n    def test(self):\n        # File structure:\n        #       .\n        #       |-- dir1\n        #       |  |__ dir2.dvc         (out.path == ../dir2)\n        #       |__ dir2\n        #           |__ something.dvc    (stage.cwd == ./dir2)\n\n        os.mkdir(os.path.join(self.dvc.root_dir, \"dir1\"))\n\n        self.dvc.run(\n            fname=os.path.join(\"dir1\", \"dir2.dvc\"),\n            wdir=\"dir1\",\n            outs=[os.path.join(\"..\", \"dir2\")],\n            cmd=\"mkdir {path}\".format(path=os.path.join(\"..\", \"dir2\")),\n            single_stage=True,\n        )\n\n        faulty_stage_path = os.path.join(\"dir2\", \"something.dvc\")\n\n        output = os.path.join(\"..\", \"something\")\n        stage_dump = {\n            \"cmd\": f\"echo something > {output}\",\n            \"outs\": [{\"path\": output}],\n        }\n        dump_yaml(faulty_stage_path, stage_dump)\n\n        with self.assertRaises(StagePathAsOutputError):\n            self.dvc.reproduce(faulty_stage_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproWorkingDirectoryAsOutput.test_similar_paths_TestReproWorkingDirectoryAsOutput.test_similar_paths.try_.except_StagePathAsOutputE.self_fail_should_not_rai": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproWorkingDirectoryAsOutput.test_similar_paths_TestReproWorkingDirectoryAsOutput.test_similar_paths.try_.except_StagePathAsOutputE.self_fail_should_not_rai", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 204, "end_line": 228, "span_ids": ["TestReproWorkingDirectoryAsOutput.test_similar_paths"], "tokens": 192}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproWorkingDirectoryAsOutput(TestDvc):\n\n    def test_similar_paths(self):\n        # File structure:\n        #\n        #       .\n        #       |-- something.dvc   (out.path == something)\n        #       |-- something\n        #       |__ something-1\n        #          |-- a\n        #          |__ a.dvc        (stage.cwd == something-1)\n\n        self.dvc.run(\n            outs=[\"something\"], cmd=\"mkdir something\", single_stage=True\n        )\n\n        os.mkdir(\"something-1\")\n\n        stage = os.path.join(\"something-1\", \"a.dvc\")\n\n        stage_dump = {\"cmd\": \"echo a > a\", \"outs\": [{\"path\": \"a\"}]}\n        dump_yaml(stage, stage_dump)\n\n        try:\n            self.dvc.reproduce(stage)\n        except StagePathAsOutputError:\n            self.fail(\"should not raise StagePathAsOutputError\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproDepDirWithOutputsUnderIt_TestReproDepDirWithOutputsUnderIt.test.None_8": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproDepDirWithOutputsUnderIt_TestReproDepDirWithOutputsUnderIt.test.None_8", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 257, "end_line": 291, "span_ids": ["TestReproDepDirWithOutputsUnderIt", "TestReproDepDirWithOutputsUnderIt.test"], "tokens": 273}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproDepDirWithOutputsUnderIt(SingleStageRun, TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.DATA)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n        stages = self.dvc.add(self.DATA_SUB)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n        deps = [self.DATA, self.DATA_SUB]\n        stage = self.dvc.run(\n            cmd=\"ls {}\".format(\" \".join(deps)),\n            fname=\"dvcfile2.dvc\",\n            deps=deps,\n            single_stage=True,\n        )\n        self.assertTrue(stage is not None)\n\n        file1 = \"file1\"\n        file1_stage = file1 + \".dvc\"\n        stage = self._run(\n            fname=file1_stage,\n            deps=[self.DATA_DIR],\n            outs=[file1],\n            cmd=f\"python {self.CODE} {self.DATA} {file1}\",\n            name=\"copy-data-file1\",\n        )\n        self.assertTrue(stage is not None)\n\n        os.unlink(self.DATA)\n        shutil.copyfile(self.FOO, self.DATA)\n\n        stages = self.dvc.reproduce(self._get_stage_target(stage))\n        self.assertEqual(len(stages), 2)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproNoDeps_TestReproNoDeps.test.self_assertEqual_len_stag": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproNoDeps_TestReproNoDeps.test.self_assertEqual_len_stag", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 294, "end_line": 313, "span_ids": ["TestReproNoDeps", "TestReproNoDeps.test"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproNoDeps(TestRepro):\n    def test(self):\n        out = \"out\"\n        code_file = \"out.py\"\n        stage_file = \"out.dvc\"\n        code = (\n            'import uuid\\nwith open(\"{}\", \"w+\") as fd:\\n'\n            \"\\tfd.write(str(uuid.uuid4()))\\n\".format(out)\n        )\n        with open(code_file, \"w+\") as fd:\n            fd.write(code)\n        stage = self._run(\n            fname=stage_file,\n            outs=[out],\n            cmd=f\"python {code_file}\",\n            name=\"uuid\",\n        )\n\n        stages = self.dvc.reproduce(self._get_stage_target(stage))\n        self.assertEqual(len(stages), 1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproForce_TestReproChangedCode.swap_code.self_create_self_CODE_ne": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproForce_TestReproChangedCode.swap_code.self_create_self_CODE_ne", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 312, "end_line": 335, "span_ids": ["TestReproChangedCode", "TestReproChangedCode.swap_code", "TestReproForce.test", "TestReproChangedCode.test", "TestReproForce"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproForce(TestRepro):\n    def test(self):\n        stages = self.dvc.reproduce(\n            self._get_stage_target(self.stage), force=True\n        )\n        self.assertEqual(len(stages), 2)\n\n\nclass TestReproChangedCode(TestRepro):\n    def test(self):\n        self.swap_code()\n\n        stages = self.dvc.reproduce(self._get_stage_target(self.stage))\n\n        self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))\n        self.assertEqual(len(stages), 1)\n\n    def swap_code(self):\n        os.unlink(self.CODE)\n        new_contents = self.CODE_CONTENTS\n        new_contents += \"\\nshutil.copyfile('{}', \" \"sys.argv[2])\\n\".format(\n            self.BAR\n        )\n        self.create(self.CODE, new_contents)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedData_TestReproUpToDate.test.self_assertEqual_ret_0_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedData_TestReproUpToDate.test.self_assertEqual_ret_0_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 338, "end_line": 371, "span_ids": ["TestReproDry", "TestReproChangedData.swap_foo_with_bar", "TestReproDry.test", "TestReproChangedData", "TestReproChangedData.test", "TestReproUpToDate", "TestReproUpToDate.test"], "tokens": 254}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproChangedData(TestRepro):\n    def test(self):\n        self.swap_foo_with_bar()\n\n        stages = self.dvc.reproduce(self._get_stage_target(self.stage))\n\n        self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))\n        self.assertEqual(len(stages), 2)\n\n    def swap_foo_with_bar(self):\n        os.unlink(self.FOO)\n        shutil.copyfile(self.BAR, self.FOO)\n\n\nclass TestReproDry(TestReproChangedData):\n    def test(self):\n        self.swap_foo_with_bar()\n\n        stages = self.dvc.reproduce(\n            self._get_stage_target(self.stage), dry=True\n        )\n\n        self.assertTrue(len(stages), 2)\n        self.assertFalse(filecmp.cmp(self.file1, self.BAR, shallow=False))\n\n        ret = main([\"repro\", \"--dry\", self._get_stage_target(self.stage)])\n        self.assertEqual(ret, 0)\n        self.assertFalse(filecmp.cmp(self.file1, self.BAR, shallow=False))\n\n\nclass TestReproUpToDate(TestRepro):\n    def test(self):\n        ret = main([\"repro\", self._get_stage_target(self.stage)])\n        self.assertEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproDryNoExec_TestReproDryNoExec.test.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproDryNoExec_TestReproDryNoExec.test.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 378, "end_line": 425, "span_ids": ["TestReproDryNoExec.test", "TestReproDryNoExec"], "tokens": 273}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproDryNoExec(TestDvc):\n    def test(self):\n        deps = []\n        for d in range(3):\n            idir = f\"idir{d}\"\n            odir = f\"odir{d}\"\n\n            deps.append(\"-d\")\n            deps.append(odir)\n\n            os.mkdir(idir)\n\n            f = os.path.join(idir, \"file\")\n            with open(f, \"w+\") as fobj:\n                fobj.write(str(d))\n\n            ret = main(\n                [\n                    \"run\",\n                    \"--no-exec\",\n                    \"--single-stage\",\n                    \"-d\",\n                    idir,\n                    \"-o\",\n                    odir,\n                    \"python -c 'import shutil; \"\n                    'shutil.copytree(\"{}\", \"{}\")\\''.format(idir, odir),\n                ]\n            )\n            self.assertEqual(ret, 0)\n\n        ret = main(\n            [\n                \"run\",\n                \"--no-exec\",\n                \"--single-stage\",\n                \"--file\",\n                DVC_FILE,\n                *deps,\n                \"ls {}\".format(\n                    \" \".join(dep for i, dep in enumerate(deps) if i % 2)\n                ),\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        ret = main([\"repro\", \"--dry\", DVC_FILE])\n        self.assertEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedDeepData_TestReproChangedDeepData.test.self_assertEqual_len_stag": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedDeepData_TestReproChangedDeepData.test.self_assertEqual_len_stag", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 428, "end_line": 448, "span_ids": ["TestReproChangedDeepData.setUp", "TestReproChangedDeepData", "TestReproChangedDeepData.test"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproChangedDeepData(TestReproChangedData):\n    def setUp(self):\n        super().setUp()\n\n        self.file2 = \"file2\"\n        self.stage = self._run(\n            fname=self.file2 + \".dvc\",\n            outs=[self.file2],\n            deps=[self.file1, self.CODE],\n            cmd=f\"python {self.CODE} {self.file1} {self.file2}\",\n            name=\"copy-file-file2\",\n        )\n\n    def test(self):\n        self.swap_foo_with_bar()\n\n        stages = self.dvc.reproduce(self._get_stage_target(self.stage))\n\n        self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))\n        self.assertTrue(filecmp.cmp(self.file2, self.BAR, shallow=False))\n        self.assertEqual(len(stages), 3)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproMetricsAddUnchanged_TestReproMetricsAddUnchanged.test.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproMetricsAddUnchanged_TestReproMetricsAddUnchanged.test.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 637, "end_line": 671, "span_ids": ["TestReproMetricsAddUnchanged.test", "TestReproMetricsAddUnchanged"], "tokens": 268}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproMetricsAddUnchanged(TestDvc):\n    def test(self):\n        \"\"\"\n        Check that adding/removing metrics doesn't affect stage state\n        \"\"\"\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n        file1 = \"file1\"\n        file1_stage = file1 + \".dvc\"\n        self.dvc.run(\n            fname=file1_stage,\n            outs_no_cache=[file1],\n            deps=[self.FOO, self.CODE],\n            cmd=f\"python {self.CODE} {self.FOO} {file1}\",\n            single_stage=True,\n        )\n\n        stages = self.dvc.reproduce(file1_stage)\n        self.assertEqual(len(stages), 0)\n\n        d = load_yaml(file1_stage)\n        d[\"outs\"][0][\"metric\"] = True\n        dump_yaml(file1_stage, d)\n\n        stages = self.dvc.reproduce(file1_stage)\n        self.assertEqual(len(stages), 0)\n\n        d = load_yaml(file1_stage)\n        d[\"outs\"][0][\"metric\"] = False\n        dump_yaml(file1_stage, d)\n\n        stages = self.dvc.reproduce(file1_stage)\n        self.assertEqual(len(stages), 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedDirData_TestReproChangedDirData.test.None_9": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedDirData_TestReproChangedDirData.test.None_9", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 738, "end_line": 779, "span_ids": ["TestReproChangedDirData.test", "TestReproChangedDirData"], "tokens": 339}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproChangedDirData(SingleStageRun, TestDvc):\n    def test(self):\n        dir_name = \"dir\"\n        dir_code = \"dir_code.py\"\n\n        with open(dir_code, \"w+\") as fd:\n            fd.write(\n                \"import os; import sys; import shutil; \"\n                \"shutil.copytree(sys.argv[1], sys.argv[2])\"\n            )\n\n        stage = self._run(\n            outs=[dir_name],\n            deps=[self.DATA_DIR, dir_code],\n            cmd=f\"python {dir_code} {self.DATA_DIR} {dir_name}\",\n            name=\"copy-dir\",\n        )\n        target = self._get_stage_target(stage)\n\n        self.assertTrue(stage is not None)\n\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 0)\n\n        with open(self.DATA_SUB, \"a\") as fd:\n            fd.write(\"add\")\n\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n        # Check that dvc indeed registers changed output dir\n        shutil.move(self.BAR, dir_name)\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n        # Check that dvc registers mtime change for the directory.\n        System.hardlink(self.DATA_SUB, self.DATA_SUB + \".lnk\")\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproMissingMd5InStageFile_TestCmdRepro.test.self_assertNotEqual_ret_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproMissingMd5InStageFile_TestCmdRepro.test.self_assertNotEqual_ret_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 759, "end_line": 781, "span_ids": ["TestReproMissingMd5InStageFile.test", "TestCmdRepro.test", "TestReproMissingMd5InStageFile", "TestCmdRepro"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproMissingMd5InStageFile(TestRepro):\n    def test(self):\n        d = load_yaml(self.file1_stage)\n        del d[Stage.PARAM_OUTS][0][LocalTree.PARAM_CHECKSUM]\n        del d[Stage.PARAM_DEPS][0][LocalTree.PARAM_CHECKSUM]\n        dump_yaml(self.file1_stage, d)\n\n        stages = self.dvc.reproduce(self.file1_stage)\n        self.assertEqual(len(stages), 1)\n\n\nclass TestCmdRepro(TestReproChangedData):\n    def test(self):\n        self.swap_foo_with_bar()\n\n        ret = main([\"status\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"repro\", self._get_stage_target(self.stage)])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"repro\", \"non-existing-file\"])\n        self.assertNotEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproAlreadyCached.test_force_import_TestReproAlreadyCached.test_force_import.with_patch_download_as_mo.with_patch_checkout_as_mo.self_assertEqual_mock_che": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproAlreadyCached.test_force_import_TestReproAlreadyCached.test_force_import.with_patch_download_as_mo.with_patch_checkout_as_mo.self_assertEqual_mock_che", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 934, "end_line": 958, "span_ids": ["TestReproAlreadyCached.test_force_import"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproAlreadyCached(TestRepro):\n\n    def test_force_import(self):\n        ret = main([\"import-url\", self.FOO, self.BAR])\n        self.assertEqual(ret, 0)\n\n        patch_download = patch.object(\n            LocalTree,\n            \"download\",\n            side_effect=LocalTree.download,\n            autospec=True,\n        )\n\n        patch_checkout = patch.object(\n            BaseOutput,\n            \"checkout\",\n            side_effect=BaseOutput.checkout,\n            autospec=True,\n        )\n\n        with patch_download as mock_download:\n            with patch_checkout as mock_checkout:\n                assert main([\"unfreeze\", \"bar.dvc\"]) == 0\n                ret = main([\"repro\", \"--force\", \"bar.dvc\"])\n                self.assertEqual(ret, 0)\n                self.assertEqual(mock_download.call_count, 1)\n                self.assertEqual(mock_checkout.call_count, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestShouldDisplayMetricsOnReproWithMetricsOption_TestShouldDisplayMetricsOnReproWithMetricsOption.test.self_assertIn_expected_me": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestShouldDisplayMetricsOnReproWithMetricsOption_TestShouldDisplayMetricsOnReproWithMetricsOption.test.self_assertIn_expected_me", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 922, "end_line": 947, "span_ids": ["TestShouldDisplayMetricsOnReproWithMetricsOption", "TestShouldDisplayMetricsOnReproWithMetricsOption.test"], "tokens": 175}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestShouldDisplayMetricsOnReproWithMetricsOption(TestDvc):\n    def test(self):\n        metrics_file = \"metrics_file\"\n        metrics_value = 0.123489015\n        ret = main(\n            [\n                \"run\",\n                \"--single-stage\",\n                \"-m\",\n                metrics_file,\n                f\"echo {metrics_value} >> {metrics_file}\",\n            ]\n        )\n        self.assertEqual(0, ret)\n\n        self._caplog.clear()\n\n        from dvc.dvcfile import DVC_FILE_SUFFIX\n\n        ret = main(\n            [\"repro\", \"--force\", \"--metrics\", metrics_file + DVC_FILE_SUFFIX]\n        )\n        self.assertEqual(0, ret)\n\n        expected_metrics_display = f\"Path\\n{metrics_file}  {metrics_value}\\n\"\n        self.assertIn(expected_metrics_display, self._caplog.text)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_s3.py__upload_multipart_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_s3.py__upload_multipart_", "embedding": null, "metadata": {"file_path": "tests/func/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 75, "end_line": 114, "span_ids": ["_upload_multipart", "test_copy_multipart_preserve_etag"], "tokens": 321}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _upload_multipart(s3, Bucket, Key):\n    mpu = s3.create_multipart_upload(Bucket=Bucket, Key=Key)\n    mpu_id = mpu[\"UploadId\"]\n\n    parts = []\n    n_parts = 10\n    for i in range(1, n_parts + 1):\n        # NOTE: Generation parts of variable size. Part size should be at\n        # least 5MB:\n        # https://docs.aws.amazon.com/AmazonS3/latest/API/mpUploadComplete.html\n        part_size = REDUCED_PART_SIZE + i\n        body = b\"1\" * part_size\n        part = s3.upload_part(\n            Bucket=Bucket,\n            Key=Key,\n            PartNumber=i,\n            UploadId=mpu_id,\n            Body=body,\n            ContentLength=len(body),\n        )\n        parts.append({\"PartNumber\": i, \"ETag\": part[\"ETag\"]})\n\n    s3.complete_multipart_upload(\n        Bucket=Bucket,\n        Key=Key,\n        UploadId=mpu_id,\n        MultipartUpload={\"Parts\": parts},\n    )\n\n\n@mock_s3\n@reduced_min_part_size\ndef test_copy_multipart_preserve_etag():\n    from_info, to_info = _get_src_dst()\n\n    s3 = boto3.client(\"s3\")\n    s3.create_bucket(Bucket=from_info.bucket)\n    _upload_multipart(s3, from_info.bucket, from_info.path)\n    S3Tree._copy(s3, from_info, to_info, {})", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_TestSCMGit_TestSCMGit.test_is_tracked.None_10": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_TestSCMGit_TestSCMGit.test_is_tracked.None_10", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 36, "end_line": 56, "span_ids": ["TestSCMGit.test_commit", "TestSCMGit", "TestSCMGit.test_is_tracked"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestSCMGit(TestGit):\n    def test_commit(self):\n        G = Git(self._root_dir)\n        G.add([\"foo\"])\n        G.commit(\"add\")\n        self.assertIn(\"foo\", self.git.git.ls_files())\n\n    def test_is_tracked(self):\n        foo = os.path.abspath(self.FOO)\n        G = Git(self._root_dir)\n        G.add([self.FOO, self.UNICODE])\n        self.assertTrue(G.is_tracked(foo))\n        self.assertTrue(G.is_tracked(self.FOO))\n        self.assertTrue(G.is_tracked(self.UNICODE))\n        G.commit(\"add\")\n        self.assertTrue(G.is_tracked(foo))\n        self.assertTrue(G.is_tracked(self.FOO))\n        G.gitpython.repo.index.remove([self.FOO], working_tree=True)\n        self.assertFalse(G.is_tracked(foo))\n        self.assertFalse(G.is_tracked(self.FOO))\n        self.assertFalse(G.is_tracked(\"not-existing-file\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestReload_TestReload.test.self_assertEqual_d_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestReload_TestReload.test.self_assertEqual_d_stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 70, "end_line": 91, "span_ids": ["TestReload.test", "TestReload"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReload(TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        stage = stages[0]\n        self.assertTrue(stage is not None)\n\n        d = load_yaml(stage.relpath)\n\n        # NOTE: checking that reloaded stage didn't change its checksum\n        md5 = \"11111111111111111111111111111111\"\n        d[stage.PARAM_MD5] = md5\n        dump_yaml(stage.relpath, d)\n\n        dvcfile = SingleStageFile(self.dvc, stage.relpath)\n        stage = dvcfile.stage\n\n        self.assertTrue(stage is not None)\n        dvcfile.dump(stage)\n\n        d = load_yaml(stage.relpath)\n        self.assertEqual(d[stage.PARAM_MD5], md5)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestExternalRemoteResolution_TestExternalRemoteResolution.test_remote_output.assert_os_path_exists_fil": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestExternalRemoteResolution_TestExternalRemoteResolution.test_remote_output.assert_os_path_exists_fil", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 114, "end_line": 137, "span_ids": ["TestExternalRemoteResolution.test_remote_output", "TestExternalRemoteResolution"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestExternalRemoteResolution(TestDvc):\n    def test_remote_output(self):\n        tmp_path = tempfile.mkdtemp()\n        storage = os.path.join(tmp_path, \"storage\")\n        file_path = os.path.join(storage, \"file\")\n\n        os.makedirs(storage)\n\n        assert main([\"remote\", \"add\", \"tmp\", tmp_path]) == 0\n        assert main([\"remote\", \"add\", \"storage\", \"remote://tmp/storage\"]) == 0\n        assert (\n            main(\n                [\n                    \"run\",\n                    \"--single-stage\",\n                    \"-O\",\n                    \"remote://storage/file\",\n                    f\"echo file > {file_path}\",\n                ]\n            )\n            == 0\n        )\n\n        assert os.path.exists(file_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestExternalRemoteResolution.test_remote_dependency_TestExternalRemoteResolution.test_remote_dependency.assert_os_path_exists_mo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestExternalRemoteResolution.test_remote_dependency_TestExternalRemoteResolution.test_remote_dependency.assert_os_path_exists_mo", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 145, "end_line": 159, "span_ids": ["TestExternalRemoteResolution.test_remote_dependency"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestExternalRemoteResolution(TestDvc):\n\n    def test_remote_dependency(self):\n        tmp_path = tempfile.mkdtemp()\n        storage = os.path.join(tmp_path, \"storage\")\n        file_path = os.path.join(storage, \"file\")\n\n        os.makedirs(storage)\n\n        with open(file_path, \"w\") as fobj:\n            fobj.write(\"Isle of Dogs\")\n\n        assert main([\"remote\", \"add\", \"tmp\", tmp_path]) == 0\n        assert main([\"remote\", \"add\", \"storage\", \"remote://tmp/storage\"]) == 0\n        assert main([\"import-url\", \"remote://storage/file\", \"movie.txt\"]) == 0\n\n        assert os.path.exists(\"movie.txt\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_system.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_system.py__", "embedding": null, "metadata": {"file_path": "tests/func/test_system.py", "file_name": "test_system.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 18, "span_ids": ["imports", "test_getdirinfo"], "tokens": 104}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.system import System\n\n\n@pytest.mark.skipif(os.name != \"nt\", reason=\"Windows specific\")\ndef test_getdirinfo(tmp_path):\n    # simulate someone holding an exclusive access\n    locked = str(tmp_path / \"locked\")\n    fd = os.open(locked, os.O_WRONLY | os.O_CREAT | os.O_EXCL)\n    try:\n        # should not raise WinError\n        System._getdirinfo(locked)\n    finally:\n        os.close(fd)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestWalkInGit_TestWalkInGit.test_nobranch.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestWalkInGit_TestWalkInGit.test_nobranch.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 145, "end_line": 159, "span_ids": ["TestWalkInGit.test_nobranch", "TestWalkInGit"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestWalkInGit(AssertWalkEqualMixin, TestGit):\n    def test_nobranch(self):\n        tree = LocalTree(None, {\"url\": self._root_dir}, use_dvcignore=True)\n        self.assertWalkEqual(\n            tree.walk(\".\"),\n            [\n                (\".\", [\"data_dir\"], [\"bar\", \"\u0442\u0435\u0441\u0442\", \"code.py\", \"foo\"]),\n                (join(\"data_dir\"), [\"data_sub_dir\"], [\"data\"]),\n                (join(\"data_dir\", \"data_sub_dir\"), [], [\"data_sub\"]),\n            ],\n        )\n        self.assertWalkEqual(\n            tree.walk(join(\"data_dir\", \"data_sub_dir\")),\n            [(join(\"data_dir\", \"data_sub_dir\"), [], [\"data_sub\"])],\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_unprotect.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_unprotect.py_os_", "embedding": null, "metadata": {"file_path": "tests/func/test_unprotect.py", "file_name": "test_unprotect.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 38, "span_ids": ["imports", "TestUnprotect", "TestUnprotect.test"], "tokens": 295}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.main import main\nfrom tests.basic_env import TestDvc\n\n\nclass TestUnprotect(TestDvc):\n    def test(self):\n        ret = main([\"config\", \"cache.type\", \"hardlink\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        cache = os.path.join(\n            \".dvc\", \"cache\", \"ac\", \"bd18db4cc2f85cedef654fccc4a4d8\"\n        )\n\n        self.assertFalse(os.access(self.FOO, os.W_OK))\n        self.assertFalse(os.access(cache, os.W_OK))\n\n        ret = main([\"unprotect\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        self.assertTrue(os.access(self.FOO, os.W_OK))\n\n        if os.name == \"nt\":\n            # NOTE: cache is now unprotected, because NTFS doesn't allow\n            # deleting read-only files, so we have to try to set write perms\n            # on files that we try to delete, which propagates to the cache\n            # file. But it should be restored after the next cache check, hence\n            # why we call `dvc status` here.\n            self.assertTrue(os.access(cache, os.W_OK))\n            ret = main([\"status\"])\n            self.assertEqual(ret, 0)\n\n        self.assertFalse(os.access(cache, os.W_OK))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_exception_under_verbose_TestColorFormatter.test_exception_under_verbose.with_caplog_at_level_logg.assert_expected_format": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_exception_under_verbose_TestColorFormatter.test_exception_under_verbose.with_caplog_at_level_logg.assert_expected_format", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 99, "end_line": 120, "span_ids": ["TestColorFormatter.test_exception_under_verbose"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestColorFormatter:\n\n    def test_exception_under_verbose(self, caplog, dt):\n        with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n            try:\n                raise Exception(\"description\")\n            except Exception:\n                stack_trace = traceback.format_exc()\n                logger.exception(\"\")\n\n            expected = (\n                \"{green}{datetime}{nc} \"\n                \"{red}ERROR{nc}: description\\n\"\n                \"{red}{line}{nc}\\n\"\n                \"{stack_trace}\"\n                \"{red}{line}{nc}\".format(\n                    line=\"-\" * 60,\n                    stack_trace=stack_trace,\n                    **colors,\n                    datetime=dt,\n                )\n            )\n\n            assert expected == formatter.format(caplog.records[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/https.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/https.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/https.py", "file_name": "https.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "HTTPSDependency"], "tokens": 32}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from ..tree.https import HTTPSTree\nfrom .http import HTTPDependency\n\n\nclass HTTPSDependency(HTTPDependency):\n    TREE_CLS = HTTPSTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scheme.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scheme.py__", "embedding": null, "metadata": {"file_path": "dvc/scheme.py", "file_name": "scheme.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 15, "span_ids": ["Schemes"], "tokens": 102}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Schemes:\n    SSH = \"ssh\"\n    HDFS = \"hdfs\"\n    WEBHDFS = \"webhdfs\"\n    S3 = \"s3\"\n    AZURE = \"azure\"\n    HTTP = \"http\"\n    HTTPS = \"https\"\n    GS = \"gs\"\n    GDRIVE = \"gdrive\"\n    LOCAL = \"local\"\n    OSS = \"oss\"\n    WEBDAV = \"webdav\"\n    WEBDAVS = \"webdavs\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State_State._from_sqlite.return.num": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State_State._from_sqlite.return.num", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 96, "end_line": 198, "span_ids": ["State.files", "State._execute", "State._fetchall", "State", "State._to_sqlite", "State.__init__", "State._from_sqlite"], "tokens": 710}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):  # pylint: disable=too-many-instance-attributes\n    \"\"\"Class for the state database.\n\n    Args:\n        repo (dvc.repo.Repo): repo instance that this state belongs to.\n        config (configobj.ConfigObj): config for the state.\n\n    Raises:\n        StateVersionTooNewError: thrown when dvc version is older than the\n            state database version.\n    \"\"\"\n\n    VERSION = 3\n    STATE_FILE = \"state\"\n    STATE_TABLE = \"state\"\n    STATE_TABLE_LAYOUT = (\n        \"inode INTEGER PRIMARY KEY, \"\n        \"mtime TEXT NOT NULL, \"\n        \"size TEXT NOT NULL, \"\n        \"md5 TEXT NOT NULL, \"\n        \"timestamp TEXT NOT NULL\"\n    )\n\n    STATE_INFO_TABLE = \"state_info\"\n    STATE_INFO_TABLE_LAYOUT = \"count INTEGER\"\n    STATE_INFO_ROW = 1\n\n    LINK_STATE_TABLE = \"link_state\"\n    LINK_STATE_TABLE_LAYOUT = (\n        \"path TEXT PRIMARY KEY, \"\n        \"inode INTEGER NOT NULL, \"\n        \"mtime TEXT NOT NULL\"\n    )\n\n    STATE_ROW_LIMIT = 100000000\n    STATE_ROW_CLEANUP_QUOTA = 50\n\n    MAX_INT = 2 ** 63 - 1\n    MAX_UINT = 2 ** 64 - 2\n\n    def __init__(self, repo):\n        from dvc.tree.local import LocalTree\n\n        super().__init__()\n\n        self.repo = repo\n        self.root_dir = repo.root_dir\n        self.tree = LocalTree(None, {\"url\": self.root_dir})\n\n        state_config = repo.config.get(\"state\", {})\n        self.row_limit = state_config.get(\"row_limit\", self.STATE_ROW_LIMIT)\n        self.row_cleanup_quota = state_config.get(\n            \"row_cleanup_quota\", self.STATE_ROW_CLEANUP_QUOTA\n        )\n\n        if not repo.tmp_dir:\n            self.state_file = None\n            return\n\n        self.state_file = os.path.join(repo.tmp_dir, self.STATE_FILE)\n\n        # https://www.sqlite.org/tempfiles.html\n        self.temp_files = [\n            self.state_file + \"-journal\",\n            self.state_file + \"-wal\",\n        ]\n\n        self.database = None\n        self.cursor = None\n        self.inserts = 0\n\n    @property\n    def files(self):\n        return self.temp_files + [self.state_file]\n\n    def _execute(self, cmd, parameters=()):\n        logger.trace(cmd)\n        return self.cursor.execute(cmd, parameters)\n\n    def _fetchall(self):\n        ret = self.cursor.fetchall()\n        logger.trace(\"fetched: %s\", ret)\n        return ret\n\n    def _to_sqlite(self, num):\n        assert num >= 0\n        assert num < self.MAX_UINT\n        # NOTE: sqlite stores unit as signed ints, so maximum uint is 2^63-1\n        # see http://jakegoulding.com/blog/2011/02/06/sqlite-64-bit-integers/\n        if num > self.MAX_INT:\n            ret = -(num - self.MAX_INT)\n        else:\n            ret = num\n        assert self._from_sqlite(ret) == num\n        return ret\n\n    def _from_sqlite(self, num):\n        assert abs(num) <= self.MAX_INT\n        if num < 0:\n            return abs(num) + self.MAX_INT\n        assert num < self.MAX_UINT\n        assert num >= 0\n        return num", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_TestDirFixture.tearDown_TestDirFixture.tearDown.try_.except_OSError_as_exc_.if_os_name_nt_and_ex.else_.raise": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_TestDirFixture.tearDown_TestDirFixture.tearDown.try_.except_OSError_as_exc_.if_os_name_nt_and_ex.else_.raise", "embedding": null, "metadata": {"file_path": "tests/basic_env.py", "file_name": "basic_env.py", "file_type": "text/x-python", "category": "implementation", "start_line": 95, "end_line": 112, "span_ids": ["TestDirFixture.tearDown"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestDirFixture:\n\n    def tearDown(self):\n        self._popd()\n        try:\n            remove(self._root_dir)\n        except OSError as exc:\n            # pylint: disable=no-member\n            # We ignore this under Windows with a warning because it happened\n            # to be really hard to trace all not properly closed files.\n            #\n            # Best guess so far is that gitpython is the culprit:\n            # it opens files and uses __del__ to close them, which can happen\n            # late in current pythons. TestGitFixture and TestDvcFixture try\n            # to close that and it works on most of the tests, but not all.\n            # Repos and thus git repos are created all over the dvc ;)\n            if os.name == \"nt\" and exc.winerror == 32:\n                warnings.warn(\"Failed to remove test dir: \" + str(exc))\n            else:\n                raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddCmdDirectoryRecursive_TestAddCmdDirectoryRecursive.test_warn_about_large_directories.with_self__caplog_at_leve.assert_warning_in_self__c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddCmdDirectoryRecursive_TestAddCmdDirectoryRecursive.test_warn_about_large_directories.with_self__caplog_at_leve.assert_warning_in_self__c", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 82, "end_line": 109, "span_ids": ["TestAddCmdDirectoryRecursive", "TestAddCmdDirectoryRecursive.test_warn_about_large_directories", "TestAddCmdDirectoryRecursive.test"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddCmdDirectoryRecursive(TestDvc):\n    def test(self):\n        ret = main([\"add\", \"--recursive\", self.DATA_DIR])\n        self.assertEqual(ret, 0)\n\n    def test_warn_about_large_directories(self):\n        warning = (\n            \"You are adding a large directory 'large-dir' recursively,\"\n            \" consider tracking it as a whole instead.\\n\"\n            \"{purple}HINT:{nc} Remove the generated DVC-file and then\"\n            \" run `{cyan}dvc add large-dir{nc}`\".format(\n                purple=colorama.Fore.MAGENTA,\n                cyan=colorama.Fore.CYAN,\n                nc=colorama.Style.RESET_ALL,\n            )\n        )\n\n        os.mkdir(\"large-dir\")\n\n        # Create a lot of files\n        for iteration in range(LARGE_DIR_SIZE + 1):\n            path = os.path.join(\"large-dir\", str(iteration))\n            with open(path, \"w\") as fobj:\n                fobj.write(path)\n\n        with self._caplog.at_level(logging.WARNING, logger=\"dvc\"):\n            assert main([\"add\", \"--recursive\", \"large-dir\"]) == 0\n            assert warning in self._caplog.messages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_parent_config_parser_parent_config_parser_set_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_parent_config_parser_parent_config_parser_set_", "embedding": null, "metadata": {"file_path": "dvc/command/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 133, "end_line": 163, "span_ids": ["impl:5"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "parent_config_parser = argparse.ArgumentParser(add_help=False)\nlevel_group = parent_config_parser.add_mutually_exclusive_group()\nlevel_group.add_argument(\n    \"--global\",\n    dest=\"level\",\n    action=\"store_const\",\n    const=\"global\",\n    help=\"Use global config.\",\n)\nlevel_group.add_argument(\n    \"--system\",\n    dest=\"level\",\n    action=\"store_const\",\n    const=\"system\",\n    help=\"Use system config.\",\n)\nlevel_group.add_argument(\n    \"--repo\",\n    dest=\"level\",\n    action=\"store_const\",\n    const=\"repo\",\n    help=\"Use repo config (.dvc/config).\",\n)\nlevel_group.add_argument(\n    \"--local\",\n    dest=\"level\",\n    action=\"store_const\",\n    const=\"local\",\n    help=\"Use local config (.dvc/config.local).\",\n)\nparent_config_parser.set_defaults(level=None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 166, "end_line": 204, "span_ids": ["add_parser"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    CONFIG_HELP = \"Get or set config options.\"\n\n    config_parser = subparsers.add_parser(\n        \"config\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(CONFIG_HELP, \"config\"),\n        help=CONFIG_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    config_parser.add_argument(\n        \"-u\",\n        \"--unset\",\n        default=False,\n        action=\"store_true\",\n        help=\"Unset option.\",\n    )\n    config_parser.add_argument(\n        \"name\",\n        nargs=\"?\",\n        type=_name_type,\n        help=\"Option name (section.option or remote.name.option).\",\n    )\n    config_parser.add_argument(\"value\", nargs=\"?\", help=\"Option value.\")\n    config_parser.add_argument(\n        \"-l\",\n        \"--list\",\n        default=False,\n        action=\"store_true\",\n        help=\"List all defined config values.\",\n    )\n    config_parser.add_argument(\n        \"--show-origin\",\n        default=False,\n        action=\"store_true\",\n        help=\"Show the source file containing each config value.\",\n    )\n    config_parser.set_defaults(func=CmdConfig)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/http.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/http.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 9, "span_ids": ["imports", "HTTPDependency"], "tokens": 47}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.base import BaseOutput\n\nfrom ..tree.http import HTTPTree\n\n\nclass HTTPDependency(BaseDependency, BaseOutput):\n    TREE_CLS = HTTPTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/hdfs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/hdfs.py__", "embedding": null, "metadata": {"file_path": "dvc/output/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["imports", "HDFSOutput"], "tokens": 34}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.base import BaseOutput\n\nfrom ..tree.hdfs import HDFSTree\n\n\nclass HDFSOutput(BaseOutput):\n    TREE_CLS = HDFSTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/s3.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/s3.py__", "embedding": null, "metadata": {"file_path": "dvc/output/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["imports", "S3Output"], "tokens": 34}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.base import BaseOutput\n\nfrom ..tree.s3 import S3Tree\n\n\nclass S3Output(BaseOutput):\n    TREE_CLS = S3Tree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/ssh.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/ssh.py__", "embedding": null, "metadata": {"file_path": "dvc/output/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["imports", "SSHOutput"], "tokens": 33}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.base import BaseOutput\n\nfrom ..tree.ssh import SSHTree\n\n\nclass SSHOutput(BaseOutput):\n    TREE_CLS = SSHTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_progress.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_progress.py_logging_", "embedding": null, "metadata": {"file_path": "tests/unit/test_progress.py", "file_name": "test_progress.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 51, "span_ids": ["test_quiet_notty", "imports", "test_quiet_logging", "test_quiet_logging_disable_false", "test_default"], "tokens": 364}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport sys\n\nimport mock\n\nfrom dvc.progress import Tqdm\nfrom dvc.utils import env2bool\n\n\ndef test_quiet_logging(caplog, capsys):\n    with caplog.at_level(logging.CRITICAL, logger=\"dvc\"):\n        for _ in Tqdm(range(10)):\n            pass\n        out_err = capsys.readouterr()\n        assert out_err.out == \"\"\n        assert out_err.err == \"\"\n\n\ndef test_quiet_logging_disable_false(caplog, capsys):\n    with caplog.at_level(logging.CRITICAL, logger=\"dvc\"):\n        # simulate interactive terminal\n        with mock.patch.object(sys.stderr, \"isatty\", return_value=True):\n            for _ in Tqdm(range(10), disable=False):\n                pass\n            out_err = capsys.readouterr()\n            assert out_err.out == \"\"\n            assert out_err.err == \"\"\n\n\ndef test_quiet_notty(caplog, capsys):\n    with caplog.at_level(logging.INFO, logger=\"dvc\"):\n        for _ in Tqdm(range(10)):\n            pass\n        out_err = capsys.readouterr()\n        assert out_err.out == \"\"\n        if env2bool(\"DVC_IGNORE_ISATTY\"):\n            assert \"0/10\" in out_err.err\n        else:\n            assert out_err.err == \"\"\n\n\ndef test_default(caplog, capsys):\n    with caplog.at_level(logging.INFO, logger=\"dvc\"):\n        # simulate interactive terminal\n        with mock.patch.object(sys.stderr, \"isatty\", return_value=True):\n            for _ in Tqdm(range(10)):\n                pass\n            out_err = capsys.readouterr()\n            assert out_err.out == \"\"\n            assert \"0/10\" in out_err.err", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/get.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/get.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/get.py", "file_name": "get.py", "file_type": "text/x-python", "category": "implementation", "start_line": 53, "end_line": 88, "span_ids": ["add_parser"], "tokens": 261}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    GET_HELP = \"Download file or directory tracked by DVC or by Git.\"\n    get_parser = subparsers.add_parser(\n        \"get\",\n        parents=[parent_parser],\n        description=append_doc_link(GET_HELP, \"get\"),\n        help=GET_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    get_parser.add_argument(\n        \"url\", help=\"Location of DVC or Git repository to download from\"\n    )\n    get_parser.add_argument(\n        \"path\", help=\"Path to a file or directory within the repository\",\n    ).complete = completion.FILE\n    get_parser.add_argument(\n        \"-o\",\n        \"--out\",\n        nargs=\"?\",\n        help=\"Destination path to download files to\",\n        metavar=\"<path>\",\n    ).complete = completion.DIR\n    get_parser.add_argument(\n        \"--rev\",\n        nargs=\"?\",\n        help=\"Git revision (e.g. SHA, branch, tag)\",\n        metavar=\"<commit>\",\n    )\n    get_parser.add_argument(\n        \"--show-url\",\n        action=\"store_true\",\n        help=\"Print the storage location (URL) the target data would be \"\n        \"downloaded from, and exit.\",\n    )\n    get_parser.set_defaults(func=CmdGet)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp_url.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp_url.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/imp_url.py", "file_name": "imp_url.py", "file_type": "text/x-python", "category": "implementation", "start_line": 32, "end_line": 81, "span_ids": ["add_parser"], "tokens": 390}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    IMPORT_HELP = (\n        \"Download or copy file from URL and take it under DVC control.\"\n    )\n\n    import_parser = subparsers.add_parser(\n        \"import-url\",\n        parents=[parent_parser],\n        description=append_doc_link(IMPORT_HELP, \"import-url\"),\n        help=IMPORT_HELP,\n        formatter_class=argparse.RawTextHelpFormatter,\n    )\n    import_parser.add_argument(\n        \"url\",\n        help=\"Location of the data to download. Supported URLs:\\n\"\n        \"/absolute/path/to/file/or/dir\\n\"\n        \"relative/path/to/file/or/dir\\n\"\n        \"C:\\\\\\\\path\\\\to\\\\file\\\\or\\\\dir\\n\"\n        \"https://example.com/path/to/file\\n\"\n        \"s3://bucket/key/path\\n\"\n        \"gs://bucket/path/to/file/or/dir\\n\"\n        \"hdfs://example.com/path/to/file\\n\"\n        \"ssh://example.com/absolute/path/to/file/or/dir\\n\"\n        \"remote://remote_name/path/to/file/or/dir (see `dvc remote`)\",\n    )\n    import_parser.add_argument(\n        \"out\", nargs=\"?\", help=\"Destination path to put files to.\",\n    ).complete = completion.DIR\n    import_parser.add_argument(\n        \"--file\",\n        help=\"Specify name of the DVC-file this command will generate.\",\n        metavar=\"<filename>\",\n    ).complete = completion.DIR\n    import_parser.add_argument(\n        \"--no-exec\",\n        action=\"store_true\",\n        default=False,\n        help=\"Only create DVC-file without actually downloading it.\",\n    )\n    import_parser.add_argument(\n        \"--desc\",\n        type=str,\n        metavar=\"<text>\",\n        help=(\n            \"User description of the data (optional). \"\n            \"This doesn't affect any DVC operations.\"\n        ),\n    )\n    import_parser.set_defaults(func=CmdImportUrl)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/imp.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/imp.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/imp.py", "file_name": "imp.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 9, "span_ids": ["imp"], "tokens": 75}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def imp(self, url, path, out=None, fname=None, rev=None, **kwargs):\n    erepo = {\"url\": url}\n    if rev is not None:\n        erepo[\"rev\"] = rev\n\n    return self.imp_url(\n        path, out=out, fname=fname, erepo=erepo, frozen=True, **kwargs\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.save_link_State.save_link.self__execute_cmd_relat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.save_link_State.save_link.self__execute_cmd_relat", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 458, "end_line": 477, "span_ids": ["State.save_link"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def save_link(self, path_info):\n        \"\"\"Adds the specified path to the list of links created by dvc. This\n        list is later used on `dvc checkout` to cleanup old links.\n\n        Args:\n            path_info (dict): path info to add to the list of links.\n        \"\"\"\n        assert isinstance(path_info, str) or path_info.scheme == \"local\"\n\n        if not self.tree.exists(path_info):\n            return\n\n        mtime, _ = get_mtime_and_size(path_info, self.tree)\n        inode = get_inode(path_info)\n        relative_path = relpath(path_info, self.root_dir)\n\n        cmd = \"REPLACE INTO {}(path, inode, mtime) \" \"VALUES (?, ?, ?)\".format(\n            self.LINK_STATE_TABLE\n        )\n        self._execute(cmd, (relative_path, self._to_sqlite(inode), mtime))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/__init__.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/__init__.py_os_", "embedding": null, "metadata": {"file_path": "tests/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 48, "span_ids": ["imports"], "tokens": 406}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport sys\n\n# FIXME: Search and replace these from the tests if pyarrow wheel is available\nPY39 = sys.version_info >= (3, 9, 0)\nPYARROW_NOT_AVAILABLE = \"pyarrow not available yet for Python3.9\"\n\n\n# Increasing fd ulimit for tests\nif os.name == \"nt\":\n    import subprocess\n\n    import win32file  # pylint: disable=import-error\n\n    win32file._setmaxstdio(4096)\n\n    # Workaround for two bugs:\n    #\n    # 1) gitpython-developers/GitPython#546\n    # GitPython leaves git cat-file --batch/--batch-check processes that are\n    # not cleaned up correctly, so Popen._active list has their defunct\n    # process handles, that it is not able to cleanup because of bug 2)\n    #\n    # 2) https://bugs.python.org/issue37380\n    # subprocess.Popen._internal_poll on windows is getting\n    #\n    # \tOSError: [WinError 6] The handle is invalid\n    #\n    # exception, which it doesn't ignore and so Popen is not able to cleanup\n    # old processes and that prevents it from creating any new processes at\n    # all, which results in our tests failing whenever they try to use Popen.\n    # This patch was released in 3.9.0 and backported to some earlier\n    # versions.\n    if sys.version_info < (3, 9, 0):\n\n        def noop():\n            pass\n\n        subprocess._cleanup = noop\n        subprocess._active = None\nelse:\n    import resource\n\n    resource.setrlimit(resource.RLIMIT_NOFILE, (4096, 4096))\n\n    nproc_soft, nproc_hard = resource.getrlimit(resource.RLIMIT_NPROC)\n    resource.setrlimit(resource.RLIMIT_NPROC, (nproc_hard, nproc_hard))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_TestGitSubmoduleFixture_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_TestGitSubmoduleFixture_", "embedding": null, "metadata": {"file_path": "tests/basic_env.py", "file_name": "basic_env.py", "file_type": "text/x-python", "category": "implementation", "start_line": 143, "end_line": 210, "span_ids": ["TestDvc", "TestGitSubmodule", "TestDvcFixture.setUp", "TestDvcGit.inject_fixtures", "TestDvcGit", "TestGit", "TestDvcGitFixture.tearDown", "TestGit.__init__", "TestDvcGitFixture", "TestDir.__init__", "TestGitSubmoduleFixture.setUp", "TestGitSubmoduleFixture", "TestDvc.inject_fixtures", "TestDvcFixture", "TestDvc.__init__", "TestDir", "TestDvcGit.__init__", "TestDvcGitFixture.setUp", "TestGitSubmodule.__init__"], "tokens": 443}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGitSubmoduleFixture(TestGitFixture):\n    def setUp(self):\n        super().setUp()\n        subrepo = Repo.init()\n        subrepo_path = \"subrepo\"\n        self.git.create_submodule(subrepo_path, subrepo_path, subrepo.git_dir)\n        self._pushd(subrepo_path)\n\n\nclass TestDvcFixture(TestDirFixture):\n    def setUp(self):\n        super().setUp()\n        self.dvc = DvcRepo.init(self.root_dir, no_scm=True)\n\n\nclass TestDvcGitFixture(TestGitFixture):\n    def setUp(self):\n        super().setUp()\n        self.dvc = DvcRepo.init(self.root_dir)\n        self.dvc.scm.commit(\"init dvc\")\n\n    def tearDown(self):\n        self.dvc.scm.close()\n        super().tearDown()\n\n\n# NOTE: Inheritance order in the classes below is important.\n\n\nclass TestDir(TestDirFixture, TestCase):\n    def __init__(self, methodName):\n        TestDirFixture.__init__(self)\n        TestCase.__init__(self, methodName)\n\n\nclass TestGit(TestGitFixture, TestCase):\n    def __init__(self, methodName):\n        TestGitFixture.__init__(self)\n        TestCase.__init__(self, methodName)\n\n\nclass TestGitSubmodule(TestGitSubmoduleFixture, TestCase):\n    def __init__(self, methodName):\n        TestGitSubmoduleFixture.__init__(self)\n        TestCase.__init__(self, methodName)\n\n\nclass TestDvc(TestDvcFixture, TestCase):\n    def __init__(self, methodName):\n        TestDvcFixture.__init__(self)\n        TestCase.__init__(self, methodName)\n        self._caplog = None\n\n    @pytest.fixture(autouse=True)\n    def inject_fixtures(self, caplog):\n        self._caplog = caplog\n\n\nclass TestDvcGit(TestDvcGitFixture, TestCase):\n    def __init__(self, methodName):\n        TestDvcGitFixture.__init__(self)\n        TestCase.__init__(self, methodName)\n        self._caplog = None\n\n    @pytest.fixture(autouse=True)\n    def inject_fixtures(self, caplog):\n        self._caplog = caplog", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_open_external_test_open_external.assert_api_read_version_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_open_external_test_open_external.assert_api_read_version_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 73, "end_line": 110, "span_ids": ["test_open_external"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"cloud\",\n    [\n        pytest.lazy_fixture(cloud)\n        for cloud in [\n            \"s3\",\n            \"gs\",\n            \"azure\",\n            \"gdrive\",\n            \"oss\",\n            \"http\",\n            \"hdfs\",\n            \"ssh\",\n            \"webdav\",\n        ]\n    ],\n)\ndef test_open_external(tmp_dir, erepo_dir, cloud):\n    erepo_dir.add_remote(config=cloud.config)\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"version\", \"master\", commit=\"add version\")\n\n        with erepo_dir.branch(\"branch\", new=\"True\"):\n            # NOTE: need file to be other size for Mac\n            erepo_dir.dvc_gen(\"version\", \"branchver\", commit=\"add version\")\n\n    erepo_dir.dvc.push(all_branches=True)\n\n    # Remove cache to force download\n    remove(erepo_dir.dvc.cache.local.cache_dir)\n\n    # Using file url to force clone to tmp repo\n    repo_url = f\"file://{erepo_dir}\"\n    with api.open(\"version\", repo=repo_url) as fd:\n        assert fd.read() == \"master\"\n\n    assert api.read(\"version\", repo=repo_url, rev=\"branch\") == \"branchver\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproShell_TestReproShell.test.None_2.self_assertEqual_os_geten": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproShell_TestReproShell.test.None_2.self_assertEqual_os_geten", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1272, "end_line": 1295, "span_ids": ["TestReproShell.test", "TestReproShell"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproShell(TestDvc):\n    def test(self):\n        if os.name == \"nt\":\n            return\n\n        fname = \"shell.txt\"\n        stage = fname + \".dvc\"\n\n        self.dvc.run(\n            fname=stage,\n            outs=[fname],\n            cmd=f\"echo $SHELL > {fname}\",\n            single_stage=True,\n        )\n\n        with open(fname) as fd:\n            self.assertEqual(os.getenv(\"SHELL\"), fd.read().strip())\n\n        os.unlink(fname)\n\n        self.dvc.reproduce(stage)\n\n        with open(fname) as fd:\n            self.assertEqual(os.getenv(\"SHELL\"), fd.read().strip())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_state_overflow_mock_get_inode.return.get_inode_mocked": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_state_overflow_mock_get_inode.return.get_inode_mocked", "embedding": null, "metadata": {"file_path": "tests/func/test_state.py", "file_name": "test_state.py", "file_type": "text/x-python", "category": "test", "start_line": 36, "end_line": 53, "span_ids": ["test_state_overflow", "mock_get_inode"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_state_overflow(tmp_dir, dvc):\n    # NOTE: trying to add more entries than state can handle,\n    # to see if it will clean up and vacuum successfully\n    dvc.config[\"state\"][\"row_limit\"] = 10\n\n    path = tmp_dir / \"dir\"\n    path.mkdir()\n    for i in range(20):\n        (path / str(i)).write_text(str(i))\n\n    dvc.add(\"dir\")\n\n\ndef mock_get_inode(inode):\n    def get_inode_mocked(_):\n        return inode\n\n    return get_inode_mocked", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_get_state_record_for_inode_test_get_state_record_for_inode.with_state_.assert_ret_is_not_None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_get_state_record_for_inode_test_get_state_record_for_inode.with_state_.assert_ret_is_not_None", "embedding": null, "metadata": {"file_path": "tests/func/test_state.py", "file_name": "test_state.py", "file_type": "text/x-python", "category": "test", "start_line": 54, "end_line": 69, "span_ids": ["test_get_state_record_for_inode"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@mock.patch(\"dvc.state.get_inode\", autospec=True)\ndef test_get_state_record_for_inode(get_inode_mock, tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo content\")\n\n    state = State(dvc)\n    inode = state.MAX_INT + 2\n    assert inode != state._to_sqlite(inode)\n\n    foo = tmp_dir / \"foo\"\n    md5 = file_md5(foo)[0]\n    get_inode_mock.side_effect = mock_get_inode(inode)\n\n    with state:\n        state.save(PathInfo(foo), HashInfo(\"md5\", md5))\n        ret = state.get_state_record_for_inode(inode)\n        assert ret is not None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_get_url.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_get_url.py__", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_get_url.py", "file_name": "test_get_url.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 15, "span_ids": ["imports", "test_get_url"], "tokens": 97}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.get_url import CmdGetUrl\n\n\ndef test_get_url(mocker):\n    cli_args = parse_args([\"get-url\", \"src\", \"out\"])\n    assert cli_args.func == CmdGetUrl\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.Repo.get_url\")\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\"src\", out=\"out\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_run.py_from_dvc_cli_import_parse_test_run.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_run.py_from_dvc_cli_import_parse_test_run.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_run.py", "file_name": "test_run.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 81, "span_ids": ["imports", "test_run"], "tokens": 438}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.run import CmdRun\n\n\ndef test_run(mocker, dvc):\n    cli_args = parse_args(\n        [\n            \"run\",\n            \"--name\",\n            \"nam\",\n            \"--deps\",\n            \"deps\",\n            \"--outs\",\n            \"outs\",\n            \"--outs-no-cache\",\n            \"outs-no-cache\",\n            \"--metrics\",\n            \"metrics\",\n            \"--metrics-no-cache\",\n            \"metrics-no-cache\",\n            \"--plots\",\n            \"plots\",\n            \"--plots-no-cache\",\n            \"plots-no-cache\",\n            \"--file\",\n            \"file\",\n            \"--wdir\",\n            \"wdir\",\n            \"--no-exec\",\n            \"--force\",\n            \"--no-run-cache\",\n            \"--no-commit\",\n            \"--outs-persist\",\n            \"outs-persist\",\n            \"--outs-persist-no-cache\",\n            \"outs-persist-no-cache\",\n            \"--checkpoints\",\n            \"checkpoints\",\n            \"--always-changed\",\n            \"--params\",\n            \"file:param1,param2\",\n            \"--params\",\n            \"param3\",\n            \"--external\",\n            \"--desc\",\n            \"description\",\n            \"command\",\n        ]\n    )\n    assert cli_args.func == CmdRun\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"run\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        deps=[\"deps\"],\n        outs=[\"outs\"],\n        outs_no_cache=[\"outs-no-cache\"],\n        metrics=[\"metrics\"],\n        metrics_no_cache=[\"metrics-no-cache\"],\n        plots=[\"plots\"],\n        plots_no_cache=[\"plots-no-cache\"],\n        outs_persist=[\"outs-persist\"],\n        outs_persist_no_cache=[\"outs-persist-no-cache\"],\n        checkpoints=[\"checkpoints\"],\n        params=[\"file:param1,param2\", \"param3\"],\n        fname=\"file\",\n        wdir=\"wdir\",\n        no_exec=True,\n        force=True,\n        run_cache=False,\n        no_commit=True,\n        always_changed=True,\n        cmd=\"command\",\n        name=\"nam\",\n        single_stage=False,\n        external=True,\n        desc=\"description\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_run.py_test_run_args_from_cli_test_run_args_from_cli.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_run.py_test_run_args_from_cli_test_run_args_from_cli.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_run.py", "file_name": "test_run.py", "file_type": "text/x-python", "category": "test", "start_line": 84, "end_line": 113, "span_ids": ["test_run_args_from_cli"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_args_from_cli(mocker, dvc):\n    args = parse_args([\"run\", \"echo\", \"foo\"])\n    cmd = args.func(args)\n    m = mocker.patch.object(cmd.repo, \"run\", autospec=True)\n    assert cmd.run() == 0\n    m.assert_called_once_with(\n        deps=[],\n        outs=[],\n        outs_no_cache=[],\n        metrics=[],\n        metrics_no_cache=[],\n        plots=[],\n        plots_no_cache=[],\n        outs_persist=[],\n        outs_persist_no_cache=[],\n        checkpoints=[],\n        params=[],\n        fname=None,\n        wdir=None,\n        no_exec=False,\n        force=False,\n        run_cache=True,\n        no_commit=False,\n        always_changed=False,\n        cmd=\"echo foo\",\n        name=None,\n        single_stage=False,\n        external=False,\n        desc=None,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_run.py_test_run_args_with_spaces_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_run.py_test_run_args_with_spaces_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_run.py", "file_name": "test_run.py", "file_type": "text/x-python", "category": "test", "start_line": 116, "end_line": 146, "span_ids": ["test_run_args_with_spaces"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_args_with_spaces(mocker, dvc):\n    args = parse_args([\"run\", \"echo\", \"foo bar\"])\n    cmd = args.func(args)\n    m = mocker.patch.object(cmd.repo, \"run\", autospec=True)\n    assert cmd.run() == 0\n    m.assert_called_once_with(\n        deps=[],\n        outs=[],\n        outs_no_cache=[],\n        metrics=[],\n        metrics_no_cache=[],\n        plots=[],\n        plots_no_cache=[],\n        outs_persist=[],\n        outs_persist_no_cache=[],\n        checkpoints=[],\n        params=[],\n        fname=None,\n        wdir=None,\n        no_exec=False,\n        force=False,\n        run_cache=True,\n        no_commit=False,\n        always_changed=False,\n        cmd='echo \"foo bar\"',\n        name=None,\n        single_stage=False,\n        external=False,\n        desc=None,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py_json_logger.logging_getLogger___name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py_json_logger.logging_getLogger___name_", "embedding": null, "metadata": {"file_path": "dvc/analytics.py", "file_name": "analytics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["imports"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport logging\nimport os\nimport platform\nimport sys\nimport tempfile\nimport uuid\n\nimport distro\nimport requests\n\nfrom dvc import __version__\nfrom dvc.config import Config, to_bool\nfrom dvc.daemon import daemon\nfrom dvc.exceptions import NotDvcRepoError\nfrom dvc.lock import Lock, LockError\nfrom dvc.repo import Repo\nfrom dvc.scm import SCM, NoSCM\nfrom dvc.scm.base import SCMError\nfrom dvc.utils import env2bool, is_binary\nfrom dvc.utils.fs import makedirs\n\nlogger = logging.getLogger(__name__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py_collect_and_send_report_collect_and_send_report.with_tempfile_NamedTempor.daemon_analytics_fobj": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py_collect_and_send_report_collect_and_send_report.with_tempfile_NamedTempor.daemon_analytics_fobj", "embedding": null, "metadata": {"file_path": "dvc/analytics.py", "file_name": "analytics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 27, "end_line": 50, "span_ids": ["collect_and_send_report"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def collect_and_send_report(args=None, return_code=None):\n    \"\"\"\n    Collect information from the runtime/environment and the command\n    being executed into a report and send it over the network.\n\n    To prevent analytics from blocking the execution of the main thread,\n    sending the report is done in a separate process.\n\n    The inter-process communication happens through a file containing the\n    report as a JSON, where the _collector_ generates it and the _sender_\n    removes it after sending it.\n    \"\"\"\n    report = {}\n\n    # Include command execution information on the report only when available.\n    if args and hasattr(args, \"func\"):\n        report.update({\"cmd_class\": args.func.__name__})\n\n    if return_code is not None:\n        report.update({\"cmd_return_code\": return_code})\n\n    with tempfile.NamedTemporaryFile(delete=False, mode=\"w\") as fobj:\n        json.dump(report, fobj)\n        daemon([\"analytics\", fobj.name])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py__scm_in_use__runtime_info.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py__scm_in_use__runtime_info.return._", "embedding": null, "metadata": {"file_path": "dvc/analytics.py", "file_name": "analytics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 85, "end_line": 105, "span_ids": ["_runtime_info", "_scm_in_use"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _scm_in_use():\n    try:\n        scm = SCM(root_dir=Repo.find_root())\n        return type(scm).__name__\n    except SCMError:\n        return NoSCM.__name__\n    except NotDvcRepoError:\n        pass\n\n\ndef _runtime_info():\n    \"\"\"\n    Gather information from the environment where DVC runs to fill a report.\n    \"\"\"\n    return {\n        \"dvc_version\": __version__,\n        \"is_binary\": is_binary(),\n        \"scm_class\": _scm_in_use(),\n        \"system_info\": _system_info(),\n        \"user_id\": _find_or_create_user_id(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py__system_info__system_info.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py__system_info__system_info.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/analytics.py", "file_name": "analytics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 108, "end_line": 134, "span_ids": ["_system_info"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _system_info():\n    system = platform.system()\n\n    if system == \"Windows\":\n        version = sys.getwindowsversion()\n\n        return {\n            \"os\": \"windows\",\n            \"windows_version_build\": version.build,\n            \"windows_version_major\": version.major,\n            \"windows_version_minor\": version.minor,\n            \"windows_version_service_pack\": version.service_pack,\n        }\n\n    if system == \"Darwin\":\n        return {\"os\": \"mac\", \"mac_version\": platform.mac_ver()[0]}\n\n    if system == \"Linux\":\n        return {\n            \"os\": \"linux\",\n            \"linux_distro\": distro.id(),\n            \"linux_distro_like\": distro.like(),\n            \"linux_distro_version\": distro.version(),\n        }\n\n    # We don't collect data for any other system.\n    raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py__find_or_create_user_id_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py__find_or_create_user_id_", "embedding": null, "metadata": {"file_path": "dvc/analytics.py", "file_name": "analytics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 140, "end_line": 174, "span_ids": ["_find_or_create_user_id"], "tokens": 258}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _find_or_create_user_id():\n    \"\"\"\n    The user's ID is stored on a file under the global config directory.\n\n    The file should contain a JSON with a \"user_id\" key:\n\n        {\"user_id\": \"16fd2706-8baf-433b-82eb-8c7fada847da\"}\n\n    IDs are generated randomly with UUID.\n    \"\"\"\n    config_dir = Config.get_dir(\"global\")\n    fname = os.path.join(config_dir, \"user_id\")\n    lockfile = os.path.join(config_dir, \"user_id.lock\")\n\n    # Since the `fname` and `lockfile` are under the global config,\n    # we need to make sure such directory exist already.\n    makedirs(config_dir, exist_ok=True)\n\n    try:\n        with Lock(lockfile):\n            try:\n                with open(fname) as fobj:\n                    user_id = json.load(fobj)[\"user_id\"]\n\n            except (FileNotFoundError, ValueError, KeyError):\n                user_id = str(uuid.uuid4())\n\n                with open(fname, \"w\") as fobj:\n                    json.dump({\"user_id\": user_id}, fobj)\n\n            return user_id\n\n    except LockError:\n        logger.debug(f\"Failed to acquire '{lockfile}'\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_open_open.return._OpenContextManager__open": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_open_open.return._OpenContextManager__open", "embedding": null, "metadata": {"file_path": "dvc/api.py", "file_name": "api.py", "file_type": "text/x-python", "category": "implementation", "start_line": 36, "end_line": 59, "span_ids": ["open"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def open(  # noqa, pylint: disable=redefined-builtin\n    path, repo=None, rev=None, remote=None, mode=\"r\", encoding=None\n):\n    \"\"\"\n    Open file in the supplied path tracked in a repo (both DVC projects and\n    plain Git repos are supported). For Git repos, HEAD is used unless a rev\n    argument is supplied. The default remote is tried unless a remote argument\n    is supplied. It may only be used as a context manager:\n\n        with dvc.api.open(\n                'path/to/file',\n                repo='https://example.com/url/to/repo'\n                ) as fd:\n            # ... Handle file object fd\n    \"\"\"\n    args = (path,)\n    kwargs = {\n        \"repo\": repo,\n        \"remote\": remote,\n        \"rev\": rev,\n        \"mode\": mode,\n        \"encoding\": encoding,\n    }\n    return _OpenContextManager(_open, args, kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py__OpenContextManager__open.with__make_repo_repo_rev.with__repo_open_by_relpat.yield_fd": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py__OpenContextManager__open.with__make_repo_repo_rev.with__repo_open_by_relpat.yield_fd", "embedding": null, "metadata": {"file_path": "dvc/api.py", "file_name": "api.py", "file_type": "text/x-python", "category": "implementation", "start_line": 62, "end_line": 80, "span_ids": ["_OpenContextManager", "_open", "_OpenContextManager.__init__", "_OpenContextManager.__getattr__"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class _OpenContextManager(GCM):\n    def __init__(\n        self, func, args, kwds\n    ):  # pylint: disable=super-init-not-called\n        self.gen = func(*args, **kwds)\n        self.func, self.args, self.kwds = func, args, kwds\n\n    def __getattr__(self, name):\n        raise AttributeError(\n            \"dvc.api.open() should be used in a with statement.\"\n        )\n\n\ndef _open(path, repo=None, rev=None, remote=None, mode=\"r\", encoding=None):\n    with _make_repo(repo, rev=rev) as _repo:\n        with _repo.open_by_relpath(\n            path, remote=remote, mode=mode, encoding=encoding\n        ) as fd:\n            yield fd", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/add.py_argparse_CmdAdd.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/add.py_argparse_CmdAdd.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["imports", "CmdAdd", "CmdAdd.run"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException, RecursiveAddingWhileUsingFilename\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdAdd(CmdBase):\n    def run(self):\n        try:\n            if len(self.args.targets) > 1 and self.args.file:\n                raise RecursiveAddingWhileUsingFilename()\n\n            self.repo.add(\n                self.args.targets,\n                recursive=self.args.recursive,\n                no_commit=self.args.no_commit,\n                fname=self.args.file,\n                external=self.args.external,\n                glob=self.args.glob,\n                desc=self.args.desc,\n            )\n\n        except DvcException:\n            logger.exception(\"\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/base.py_logging_append_doc_link.return._message_nDocumentation": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/base.py_logging_append_doc_link.return._message_nDocumentation", "embedding": null, "metadata": {"file_path": "dvc/command/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 28, "span_ids": ["imports", "fix_subparsers", "append_doc_link"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom abc import ABC, abstractmethod\n\nlogger = logging.getLogger(__name__)\n\n\ndef fix_subparsers(subparsers):\n    \"\"\"Workaround for bug in Python 3. See more info at:\n        https://bugs.python.org/issue16308\n        https://github.com/iterative/dvc/issues/769\n\n        Args:\n            subparsers: subparsers to fix.\n    \"\"\"\n    subparsers.required = True\n    subparsers.dest = \"cmd\"\n\n\ndef append_doc_link(help_message, path):\n    from dvc.utils import format_link\n\n    if not path:\n        return help_message\n    doc_base = \"https://man.dvc.org/\"\n    return \"{message}\\nDocumentation: {link}\".format(\n        message=help_message, link=format_link(doc_base + path)\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/checkout.py_CmdCheckout_CmdCheckout.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/checkout.py_CmdCheckout_CmdCheckout.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/checkout.py", "file_name": "checkout.py", "file_type": "text/x-python", "category": "implementation", "start_line": 39, "end_line": 65, "span_ids": ["CmdCheckout", "CmdCheckout.run"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdCheckout(CmdBase):\n    def run(self):\n        stats, exc = None, None\n        try:\n            stats = self.repo.checkout(\n                targets=self.args.targets,\n                with_deps=self.args.with_deps,\n                force=self.args.force,\n                relink=self.args.relink,\n                recursive=self.args.recursive,\n            )\n        except CheckoutError as _exc:\n            exc = _exc\n            stats = exc.stats\n\n        if self.args.summary:\n            default_message = \"No changes.\"\n            msg = get_summary(\n                sorted(stats.items(), key=operator.itemgetter(0))\n            )\n            logger.info(msg or default_message)\n        else:\n            log_changes(stats)\n\n        if exc:\n            raise exc\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/checkout.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/checkout.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/checkout.py", "file_name": "checkout.py", "file_type": "text/x-python", "category": "implementation", "start_line": 69, "end_line": 121, "span_ids": ["add_parser"], "tokens": 319}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    CHECKOUT_HELP = \"Checkout data files from cache.\"\n\n    checkout_parser = subparsers.add_parser(\n        \"checkout\",\n        parents=[parent_parser],\n        description=append_doc_link(CHECKOUT_HELP, \"checkout\"),\n        help=CHECKOUT_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    checkout_parser.add_argument(\n        \"--summary\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show summary of the changes.\",\n    )\n    checkout_parser.add_argument(\n        \"-d\",\n        \"--with-deps\",\n        action=\"store_true\",\n        default=False,\n        help=\"Checkout all dependencies of the specified target.\",\n    )\n    checkout_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Checkout all subdirectories of the specified directory.\",\n    )\n    checkout_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Do not prompt when removing working directory files.\",\n    )\n    checkout_parser.add_argument(\n        \"--relink\",\n        action=\"store_true\",\n        default=False,\n        help=\"Recreate links or copies from cache to workspace.\",\n    )\n    checkout_parser.add_argument(\n        \"targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these tracked files/directories, \"\n            \".dvc files, or stage names.\"\n        ),\n    ).complete = completion.DVC_FILE\n    checkout_parser.set_defaults(func=CmdCheckout)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/commit.py_argparse_CmdCommit.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/commit.py_argparse_CmdCommit.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/commit.py", "file_name": "commit.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["imports", "CmdCommit", "CmdCommit.run"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdCommit(CmdBase):\n    def run(self):\n        if not self.args.targets:\n            self.args.targets = [None]\n\n        for target in self.args.targets:\n            try:\n                self.repo.commit(\n                    target,\n                    with_deps=self.args.with_deps,\n                    recursive=self.args.recursive,\n                    force=self.args.force,\n                )\n            except DvcException:\n                logger.exception(\n                    \"failed to commit{}\".format(\n                        (\" \" + target) if target else \"\"\n                    )\n                )\n                return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_argparse_CmdDataPull.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_argparse_CmdDataPull.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/data_sync.py", "file_name": "data_sync.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 44, "span_ids": ["CmdDataPull.run", "imports", "CmdDataBase.log_summary", "CmdDataPull", "CmdDataBase", "CmdDataPull.log_summary"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.command.checkout import log_changes\nfrom dvc.exceptions import CheckoutError, DvcException\nfrom dvc.utils.humanize import get_summary\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdDataBase(CmdBase):\n    def log_summary(self, stats):\n        default_msg = \"Everything is up to date.\"\n        logger.info(get_summary(stats.items()) or default_msg)\n\n\nclass CmdDataPull(CmdDataBase):\n    def log_summary(self, stats):\n        log_changes(stats)\n        super().log_summary(stats)\n\n    def run(self):\n        try:\n            stats = self.repo.pull(\n                targets=self.args.targets,\n                jobs=self.args.jobs,\n                remote=self.args.remote,\n                all_branches=self.args.all_branches,\n                all_tags=self.args.all_tags,\n                all_commits=self.args.all_commits,\n                with_deps=self.args.with_deps,\n                force=self.args.force,\n                recursive=self.args.recursive,\n                run_cache=self.args.run_cache,\n            )\n            self.log_summary(stats)\n        except (CheckoutError, DvcException) as exc:\n            self.log_summary(getattr(exc, \"stats\", {}))\n            logger.exception(\"failed to pull data from the cloud\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_CmdDataPush_CmdDataPush.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_CmdDataPush_CmdDataPush.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/data_sync.py", "file_name": "data_sync.py", "file_type": "text/x-python", "category": "implementation", "start_line": 47, "end_line": 66, "span_ids": ["CmdDataPush.run", "CmdDataPush"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdDataPush(CmdDataBase):\n    def run(self):\n        try:\n            processed_files_count = self.repo.push(\n                targets=self.args.targets,\n                jobs=self.args.jobs,\n                remote=self.args.remote,\n                all_branches=self.args.all_branches,\n                all_tags=self.args.all_tags,\n                all_commits=self.args.all_commits,\n                with_deps=self.args.with_deps,\n                recursive=self.args.recursive,\n                run_cache=self.args.run_cache,\n                glob=self.args.glob,\n            )\n            self.log_summary({\"pushed\": processed_files_count})\n        except DvcException:\n            logger.exception(\"failed to push data to the cloud\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_CmdDataFetch_CmdDataFetch.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_CmdDataFetch_CmdDataFetch.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/data_sync.py", "file_name": "data_sync.py", "file_type": "text/x-python", "category": "implementation", "start_line": 67, "end_line": 85, "span_ids": ["CmdDataFetch.run", "CmdDataFetch"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdDataFetch(CmdDataBase):\n    def run(self):\n        try:\n            processed_files_count = self.repo.fetch(\n                targets=self.args.targets,\n                jobs=self.args.jobs,\n                remote=self.args.remote,\n                all_branches=self.args.all_branches,\n                all_tags=self.args.all_tags,\n                all_commits=self.args.all_commits,\n                with_deps=self.args.with_deps,\n                recursive=self.args.recursive,\n                run_cache=self.args.run_cache,\n            )\n            self.log_summary({\"fetched\": processed_files_count})\n        except DvcException:\n            logger.exception(\"failed to fetch data from the cloud\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/destroy.py_argparse_CmdDestroy.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/destroy.py_argparse_CmdDestroy.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/destroy.py", "file_name": "destroy.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["imports", "CmdDestroy.run", "CmdDestroy"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nimport dvc.prompt as prompt\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdDestroy(CmdBase):\n    def run(self):\n        try:\n            statement = (\n                \"This will destroy all information about your pipelines,\"\n                \" all data files, as well as cache in .dvc/cache.\"\n                \"\\n\"\n                \"Are you sure you want to continue?\"\n            )\n\n            if not self.args.force and not prompt.confirm(statement):\n                raise DvcException(\n                    \"cannot destroy without a confirmation from the user.\"\n                    \" Use `-f` to force.\"\n                )\n\n            self.repo.destroy()\n        except DvcException:\n            logger.exception(\"failed to destroy DVC\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/gc.py_argparse_CmdGC.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/gc.py_argparse_CmdGC.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/gc.py", "file_name": "gc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 62, "span_ids": ["imports", "CmdGC", "CmdGC.run"], "tokens": 396}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\nimport os\n\nimport dvc.prompt as prompt\nfrom dvc.command.base import CmdBase, append_doc_link\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdGC(CmdBase):\n    def run(self):\n        from dvc.repo.gc import _raise_error_if_all_disabled\n\n        _raise_error_if_all_disabled(\n            all_branches=self.args.all_branches,\n            all_tags=self.args.all_tags,\n            all_commits=self.args.all_commits,\n            workspace=self.args.workspace,\n        )\n\n        msg = \"This will remove all cache except items used in \"\n\n        msg += \"the workspace\"\n        if self.args.all_commits:\n            msg += \" and all git commits\"\n        elif self.args.all_branches and self.args.all_tags:\n            msg += \" and all git branches and tags\"\n        elif self.args.all_branches:\n            msg += \" and all git branches\"\n        elif self.args.all_tags:\n            msg += \" and all git tags\"\n        elif self.args.all_experiments:\n            msg += \" and all experiments\"\n\n        if self.args.repos:\n            msg += \" of the current and the following repos:\"\n\n            for repo_path in self.args.repos:\n                msg += \"\\n  - %s\" % os.path.abspath(repo_path)\n        else:\n            msg += \" of the current repo.\"\n\n        logger.warning(msg)\n\n        msg = \"Are you sure you want to proceed?\"\n        if not self.args.force and not prompt.confirm(msg):\n            return 1\n\n        self.repo.gc(\n            all_branches=self.args.all_branches,\n            all_tags=self.args.all_tags,\n            all_commits=self.args.all_commits,\n            all_experiments=self.args.all_experiments,\n            cloud=self.args.cloud,\n            remote=self.args.remote,\n            force=self.args.force,\n            jobs=self.args.jobs,\n            repos=self.args.repos,\n            workspace=self.args.workspace,\n        )\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/get.py_argparse_CmdGet._get_file_from_repo.try_.except_DvcException_.return.1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/get.py_argparse_CmdGet._get_file_from_repo.try_.except_DvcException_.return.1", "embedding": null, "metadata": {"file_path": "dvc/command/get.py", "file_name": "get.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 50, "span_ids": ["CmdGet", "CmdGet._get_file_from_repo", "imports", "CmdGet._show_url", "CmdGet.run"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.exceptions import DvcException\n\nfrom . import completion\nfrom .base import CmdBaseNoRepo, append_doc_link\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdGet(CmdBaseNoRepo):\n    def _show_url(self):\n        from dvc.api import get_url\n\n        try:\n            url = get_url(\n                self.args.path, repo=self.args.url, rev=self.args.rev\n            )\n            logger.info(url)\n        except DvcException:\n            logger.exception(\"failed to show URL\")\n            return 1\n\n        return 0\n\n    def run(self):\n        if self.args.show_url:\n            return self._show_url()\n\n        return self._get_file_from_repo()\n\n    def _get_file_from_repo(self):\n        from dvc.repo import Repo\n\n        try:\n            Repo.get(\n                self.args.url,\n                path=self.args.path,\n                out=self.args.out,\n                rev=self.args.rev,\n            )\n            return 0\n        except DvcException:\n            logger.exception(\n                \"failed to get '{}' from '{}'\".format(\n                    self.args.path, self.args.url\n                )\n            )\n            return 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/get_url.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/get_url.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/get_url.py", "file_name": "get_url.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 40, "span_ids": ["imports", "CmdGetUrl.run", "CmdGetUrl", "add_parser"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.exceptions import DvcException\n\nfrom . import completion\nfrom .base import CmdBaseNoRepo, append_doc_link\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdGetUrl(CmdBaseNoRepo):\n    def run(self):\n        from dvc.repo import Repo\n\n        try:\n            Repo.get_url(self.args.url, out=self.args.out)\n            return 0\n        except DvcException:\n            logger.exception(f\"failed to get '{self.args.url}'\")\n            return 1\n\n\ndef add_parser(subparsers, parent_parser):\n    GET_HELP = \"Download or copy files from URL.\"\n    get_parser = subparsers.add_parser(\n        \"get-url\",\n        parents=[parent_parser],\n        description=append_doc_link(GET_HELP, \"get-url\"),\n        help=GET_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    get_parser.add_argument(\n        \"url\", help=\"See `dvc import-url -h` for full list of supported URLs.\"\n    )\n    get_parser.add_argument(\n        \"out\", nargs=\"?\", help=\"Destination path to put data to.\",\n    ).complete = completion.DIR\n    get_parser.set_defaults(func=CmdGetUrl)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_logging_CmdPreCommit._run.return.main_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_logging_CmdPreCommit._run.return.main_status_", "embedding": null, "metadata": {"file_path": "dvc/command/git_hook.py", "file_name": "git_hook.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["CmdHookBase._run", "CmdHookBase", "imports", "CmdPreCommit._run", "CmdPreCommit", "CmdHookBase.run"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nfrom dvc.command.base import CmdBaseNoRepo, fix_subparsers\nfrom dvc.exceptions import NotDvcRepoError\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdHookBase(CmdBaseNoRepo):\n    def run(self):\n        from dvc.repo import Repo\n\n        try:\n            repo = Repo()\n            repo.close()\n        except NotDvcRepoError:\n            return 0\n\n        return self._run()\n\n    def _run(self):\n        raise NotImplementedError\n\n\nclass CmdPreCommit(CmdHookBase):\n    def _run(self):\n        from dvc.main import main\n\n        return main([\"status\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/git_hook.py", "file_name": "git_hook.py", "file_type": "text/x-python", "category": "implementation", "start_line": 84, "end_line": 160, "span_ids": ["add_parser"], "tokens": 526}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    GIT_HOOK_HELP = \"Run GIT hook.\"\n\n    git_hook_parser = subparsers.add_parser(\n        \"git-hook\",\n        parents=[parent_parser],\n        description=GIT_HOOK_HELP,\n        add_help=False,\n    )\n\n    git_hook_subparsers = git_hook_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc daemon CMD --help` for command-specific help.\",\n    )\n\n    fix_subparsers(git_hook_subparsers)\n\n    PRE_COMMIT_HELP = \"Run pre-commit GIT hook.\"\n    pre_commit_parser = git_hook_subparsers.add_parser(\n        \"pre-commit\",\n        parents=[parent_parser],\n        description=PRE_COMMIT_HELP,\n        help=PRE_COMMIT_HELP,\n    )\n    pre_commit_parser.add_argument(\n        \"args\", nargs=\"*\", help=\"Arguments passed by GIT or pre-commit tool.\",\n    )\n    pre_commit_parser.set_defaults(func=CmdPreCommit)\n\n    POST_CHECKOUT_HELP = \"Run post-checkout GIT hook.\"\n    post_checkout_parser = git_hook_subparsers.add_parser(\n        \"post-checkout\",\n        parents=[parent_parser],\n        description=POST_CHECKOUT_HELP,\n        help=POST_CHECKOUT_HELP,\n    )\n    post_checkout_parser.add_argument(\n        \"args\", nargs=\"*\", help=\"Arguments passed by GIT or pre-commit tool.\",\n    )\n    post_checkout_parser.set_defaults(func=CmdPostCheckout)\n\n    PRE_PUSH_HELP = \"Run pre-push GIT hook.\"\n    pre_push_parser = git_hook_subparsers.add_parser(\n        \"pre-push\",\n        parents=[parent_parser],\n        description=PRE_PUSH_HELP,\n        help=PRE_PUSH_HELP,\n    )\n    pre_push_parser.add_argument(\n        \"args\", nargs=\"*\", help=\"Arguments passed by GIT or pre-commit tool.\",\n    )\n    pre_push_parser.set_defaults(func=CmdPrePush)\n\n    MERGE_DRIVER_HELP = \"Run GIT merge driver.\"\n    merge_driver_parser = git_hook_subparsers.add_parser(\n        \"merge-driver\",\n        parents=[parent_parser],\n        description=MERGE_DRIVER_HELP,\n        help=MERGE_DRIVER_HELP,\n    )\n    merge_driver_parser.add_argument(\n        \"--ancestor\",\n        required=True,\n        help=\"Ancestor's version of the conflicting file.\",\n    )\n    merge_driver_parser.add_argument(\n        \"--our\",\n        required=True,\n        help=\"Current version of the conflicting file.\",\n    )\n    merge_driver_parser.add_argument(\n        \"--their\",\n        required=True,\n        help=\"Other branch's version of the conflicting file.\",\n    )\n    merge_driver_parser.set_defaults(func=CmdMergeDriver)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp.py_argparse_CmdImport.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp.py_argparse_CmdImport.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/imp.py", "file_name": "imp.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["CmdImport.run", "imports", "CmdImport"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdImport(CmdBase):\n    def run(self):\n        try:\n            self.repo.imp(\n                self.args.url,\n                self.args.path,\n                out=self.args.out,\n                fname=self.args.file,\n                rev=self.args.rev,\n                no_exec=self.args.no_exec,\n                desc=self.args.desc,\n                jobs=self.args.jobs,\n            )\n        except DvcException:\n            logger.exception(\n                \"failed to import '{}' from '{}'.\".format(\n                    self.args.path, self.args.url\n                )\n            )\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp_url.py_argparse_CmdImportUrl.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/imp_url.py_argparse_CmdImportUrl.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/imp_url.py", "file_name": "imp_url.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["imports", "CmdImportUrl", "CmdImportUrl.run"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdImportUrl(CmdBase):\n    def run(self):\n        try:\n            self.repo.imp_url(\n                self.args.url,\n                out=self.args.out,\n                fname=self.args.file,\n                no_exec=self.args.no_exec,\n                desc=self.args.desc,\n            )\n        except DvcException:\n            logger.exception(\n                \"failed to import {}. You could also try downloading \"\n                \"it manually, and adding it with `dvc add`.\".format(\n                    self.args.url\n                )\n            )\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/init.py_argparse_CmdInit.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/init.py_argparse_CmdInit.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/init.py", "file_name": "init.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 53, "span_ids": ["imports", "CmdInit", "CmdInit.run", "_welcome_message"], "tokens": 354}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nimport colorama\n\nfrom dvc import analytics\nfrom dvc.command.base import CmdBaseNoRepo, append_doc_link\nfrom dvc.utils import boxify\nfrom dvc.utils import format_link as fmt_link\n\nlogger = logging.getLogger(__name__)\n\n\ndef _welcome_message():\n    if analytics.is_enabled():\n        logger.info(\n            boxify(\n                \"DVC has enabled anonymous aggregate usage analytics.\\n\"\n                \"Read the analytics documentation (and how to opt-out) here:\\n\"\n                + fmt_link(\"https://dvc.org/doc/user-guide/analytics\"),\n                border_color=\"red\",\n            )\n        )\n\n    msg = (\n        \"{yellow}What's next?{nc}\\n\"\n        \"{yellow}------------{nc}\\n\"\n        f\"- Check out the documentation: {fmt_link('https://dvc.org/doc')}\\n\"\n        f\"- Get help and share ideas: {fmt_link('https://dvc.org/chat')}\\n\"\n        f\"- Star us on GitHub: {fmt_link('https://github.com/iterative/dvc')}\"\n    ).format(yellow=colorama.Fore.YELLOW, nc=colorama.Fore.RESET)\n\n    logger.info(msg)\n\n\nclass CmdInit(CmdBaseNoRepo):\n    def run(self):\n        from dvc.exceptions import InitError\n        from dvc.repo import Repo\n\n        try:\n            self.repo = Repo.init(\n                \".\",\n                no_scm=self.args.no_scm,\n                force=self.args.force,\n                subdir=self.args.subdir,\n            )\n            self.config = self.repo.config\n            _welcome_message()\n        except InitError:\n            logger.exception(\"failed to initiate DVC\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/install.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/install.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/install.py", "file_name": "install.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 37, "span_ids": ["imports", "CmdInstall.run", "add_parser", "CmdInstall"], "tokens": 222}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdInstall(CmdBase):\n    def run(self):\n        try:\n            self.repo.install(self.args.use_pre_commit_tool)\n        except DvcException:\n            logger.exception(\"failed to install DVC Git hooks\")\n            return 1\n        return 0\n\n\ndef add_parser(subparsers, parent_parser):\n    INSTALL_HELP = \"Install DVC git hooks into the repository.\"\n    install_parser = subparsers.add_parser(\n        \"install\",\n        parents=[parent_parser],\n        description=append_doc_link(INSTALL_HELP, \"install\"),\n        help=INSTALL_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    install_parser.add_argument(\n        \"--use-pre-commit-tool\",\n        action=\"store_true\",\n        default=False,\n        help=\"Install DVC hooks using pre-commit \"\n        \"(https://pre-commit.com) if it is installed.\",\n    )\n    install_parser.set_defaults(func=CmdInstall)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/__init__.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/__init__.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/ls/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 46, "end_line": 80, "span_ids": ["add_parser"], "tokens": 245}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    LIST_HELP = (\n        \"List repository contents, including files\"\n        \" and directories tracked by DVC and by Git.\"\n    )\n    list_parser = subparsers.add_parser(\n        \"list\",\n        parents=[parent_parser],\n        description=append_doc_link(LIST_HELP, \"list\"),\n        help=LIST_HELP,\n        formatter_class=argparse.RawTextHelpFormatter,\n    )\n    list_parser.add_argument(\"url\", help=\"Location of DVC repository to list\")\n    list_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        help=\"Recursively list files.\",\n    )\n    list_parser.add_argument(\n        \"--dvc-only\", action=\"store_true\", help=\"Show only DVC outputs.\"\n    )\n    list_parser.add_argument(\n        \"--rev\",\n        nargs=\"?\",\n        help=\"Git revision (e.g. SHA, branch, tag)\",\n        metavar=\"<commit>\",\n    )\n    list_parser.add_argument(\n        \"path\",\n        nargs=\"?\",\n        help=\"Path to directory within the repository to list outputs for\",\n    ).complete = completion.DIR\n    list_parser.set_defaults(func=CmdList)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/ls_colors.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/ls_colors.py_os_", "embedding": null, "metadata": {"file_path": "dvc/command/ls/ls_colors.py", "file_name": "ls_colors.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 49, "span_ids": ["LsColors._format", "LsColors._load", "imports", "LsColors.__init__", "LsColors.format", "LsColors"], "tokens": 344}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\n\nclass LsColors:\n    default = \"rs=0:di=01;34:ex=01;32\"\n\n    def __init__(self, lscolors=None):\n        self._extensions = {}\n        self._codes = {}\n        self._load(lscolors or os.environ.get(\"LS_COLORS\") or LsColors.default)\n\n    def _load(self, lscolors):\n        for item in lscolors.split(\":\"):\n            try:\n                code, color = item.split(\"=\", 1)\n            except ValueError:\n                continue\n            if code.startswith(\"*.\"):\n                self._extensions[code[1:]] = color\n            else:\n                self._codes[code] = color\n\n    def format(self, entry):\n        text = entry[\"path\"]\n\n        if entry.get(\"isout\", False) and \"out\" in self._codes:\n            return self._format(text, code=\"out\")\n\n        if entry.get(\"isdir\", False):\n            return self._format(text, code=\"di\")\n\n        if entry.get(\"isexec\", False):\n            return self._format(text, code=\"ex\")\n\n        _, ext = os.path.splitext(text)\n        return self._format(text, ext=ext)\n\n    def _format(self, text, code=None, ext=None):\n        val = None\n        if ext:\n            val = self._extensions.get(ext, None)\n        if code:\n            val = self._codes.get(code, None)\n\n        if not val:\n            return text\n        rs = self._codes.get(\"rs\", 0)\n        return f\"\\033[{val}m{text}\\033[{rs}m\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_CmdMetricsDiff_CmdMetricsDiff.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_CmdMetricsDiff_CmdMetricsDiff.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/metrics.py", "file_name": "metrics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 112, "end_line": 141, "span_ids": ["CmdMetricsDiff.run", "CmdMetricsDiff"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdMetricsDiff(CmdMetricsBase):\n    def run(self):\n        try:\n            diff = self.repo.metrics.diff(\n                a_rev=self.args.a_rev,\n                b_rev=self.args.b_rev,\n                targets=self.args.targets,\n                recursive=self.args.recursive,\n                all=self.args.all,\n            )\n\n            if self.args.show_json:\n                import json\n\n                logger.info(json.dumps(diff))\n            else:\n                table = _show_diff(\n                    diff,\n                    self.args.show_md,\n                    self.args.no_path,\n                    precision=self.args.precision,\n                )\n                if table:\n                    logger.info(table)\n\n        except DvcException:\n            logger.exception(\"failed to show metrics diff\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/move.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/move.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/move.py", "file_name": "move.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 46, "span_ids": ["imports", "CmdMove.run", "add_parser", "CmdMove"], "tokens": 296}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdMove(CmdBase):\n    def run(self):\n        try:\n            self.repo.move(self.args.src, self.args.dst)\n        except DvcException:\n            msg = \"failed to move '{}' -> '{}'\".format(\n                self.args.src, self.args.dst\n            )\n            logger.exception(msg)\n            return 1\n        return 0\n\n\ndef add_parser(subparsers, parent_parser):\n    MOVE_HELP = \"Rename or move a DVC controlled data file or a directory.\"\n    MOVE_DESCRIPTION = (\n        \"Rename or move a DVC controlled data file or a directory.\\n\"\n        \"It renames and modifies the corresponding DVC-file to reflect the\"\n        \" changes.\"\n    )\n\n    move_parser = subparsers.add_parser(\n        \"move\",\n        parents=[parent_parser],\n        description=append_doc_link(MOVE_DESCRIPTION, \"move\"),\n        help=MOVE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    move_parser.add_argument(\n        \"src\", help=\"Source path to a data file or directory.\",\n    ).complete = completion.FILE\n    move_parser.add_argument(\n        \"dst\", help=\"Destination path.\",\n    ).complete = completion.FILE\n    move_parser.set_defaults(func=CmdMove)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteAdd_CmdRemoteAdd.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteAdd_CmdRemoteAdd.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 24, "end_line": 40, "span_ids": ["CmdRemoteAdd", "CmdRemoteAdd.run"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdRemoteAdd(CmdRemote):\n    def run(self):\n        if self.args.default:\n            logger.info(f\"Setting '{self.args.name}' as a default remote.\")\n\n        with self.config.edit(self.args.level) as conf:\n            if self.args.name in conf[\"remote\"] and not self.args.force:\n                raise ConfigError(\n                    \"remote '{}' already exists. Use `-f|--force` to \"\n                    \"overwrite it.\".format(self.args.name)\n                )\n\n            conf[\"remote\"][self.args.name] = {\"url\": self.args.url}\n            if self.args.default:\n                conf[\"core\"][\"remote\"] = self.args.name\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/root.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/root.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/root.py", "file_name": "root.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 28, "span_ids": ["imports", "CmdRoot.run", "CmdRoot", "add_parser"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command.base import CmdBaseNoRepo, append_doc_link\nfrom dvc.utils import relpath\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdRoot(CmdBaseNoRepo):\n    def run(self):\n        from dvc.repo import Repo\n\n        logger.info(relpath(Repo.find_root()))\n        return 0\n\n\ndef add_parser(subparsers, parent_parser):\n    ROOT_HELP = \"Return the relative path to the root of the DVC project.\"\n    root_parser = subparsers.add_parser(\n        \"root\",\n        parents=[parent_parser],\n        description=append_doc_link(ROOT_HELP, \"root\"),\n        help=ROOT_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    root_parser.set_defaults(func=CmdRoot)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_argparse_CmdRun.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_argparse_CmdRun.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 66, "span_ids": ["imports", "CmdRun", "CmdRun.run"], "tokens": 448}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdRun(CmdBase):\n    def run(self):\n        if not any(\n            [\n                self.args.deps,\n                self.args.outs,\n                self.args.outs_no_cache,\n                self.args.metrics,\n                self.args.metrics_no_cache,\n                self.args.plots,\n                self.args.plots_no_cache,\n                self.args.outs_persist,\n                self.args.outs_persist_no_cache,\n                self.args.checkpoints,\n                self.args.params,\n                self.args.command,\n            ]\n        ):  # pragma: no cover\n            logger.error(\n                \"too few arguments. Specify at least one: `-d`, `-o`, `-O`, \"\n                \"`-m`, `-M`, `-p`, `--plots`, `--plots-no-cache`, \"\n                \"`--outs-persist`, `--outs-persist-no-cache`, `command`.\"\n            )\n            return 1\n\n        try:\n            self.repo.run(\n                cmd=self._parsed_cmd(),\n                outs=self.args.outs,\n                outs_no_cache=self.args.outs_no_cache,\n                metrics=self.args.metrics,\n                metrics_no_cache=self.args.metrics_no_cache,\n                plots=self.args.plots,\n                plots_no_cache=self.args.plots_no_cache,\n                deps=self.args.deps,\n                params=self.args.params,\n                fname=self.args.file,\n                wdir=self.args.wdir,\n                no_exec=(self.args.no_exec or bool(self.args.checkpoints)),\n                force=self.args.force,\n                run_cache=not self.args.no_run_cache,\n                no_commit=self.args.no_commit,\n                outs_persist=self.args.outs_persist,\n                outs_persist_no_cache=self.args.outs_persist_no_cache,\n                checkpoints=self.args.checkpoints,\n                always_changed=self.args.always_changed,\n                name=self.args.name,\n                single_stage=self.args.single_stage,\n                external=self.args.external,\n                desc=self.args.desc,\n            )\n        except DvcException:\n            logger.exception(\"\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/status.py_CmdDataStatus.run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/status.py_CmdDataStatus.run_", "embedding": null, "metadata": {"file_path": "dvc/command/status.py", "file_name": "status.py", "file_type": "text/x-python", "category": "implementation", "start_line": 46, "end_line": 84, "span_ids": ["CmdDataStatus.run"], "tokens": 237}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdDataStatus(CmdDataBase):\n\n    def run(self):\n        indent = 1 if self.args.cloud else 0\n        try:\n            st = self.repo.status(\n                targets=self.args.targets,\n                jobs=self.args.jobs,\n                cloud=self.args.cloud,\n                remote=self.args.remote,\n                all_branches=self.args.all_branches,\n                all_tags=self.args.all_tags,\n                all_commits=self.args.all_commits,\n                with_deps=self.args.with_deps,\n                recursive=self.args.recursive,\n            )\n\n            if self.args.quiet:\n                return bool(st)\n\n            if self.args.show_json:\n                import json\n\n                logger.info(json.dumps(st))\n            elif st:\n                self._show(st, indent)\n            elif not self.repo.stages:\n                logger.info(self.EMPTY_PROJECT_MSG)\n            elif self.args.cloud or self.args.remote:\n                remote = self.args.remote or self.repo.config[\"core\"].get(\n                    \"remote\"\n                )\n                logger.info(self.IN_SYNC_MSG.format(remote=remote))\n            else:\n                logger.info(self.UP_TO_DATE_MSG)\n\n        except DvcException:\n            logger.exception(\"\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/unprotect.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/unprotect.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/unprotect.py", "file_name": "unprotect.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 39, "span_ids": ["imports", "add_parser", "CmdUnprotect", "CmdUnprotect.run"], "tokens": 258}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdUnprotect(CmdBase):\n    def run(self):\n        for target in self.args.targets:\n            try:\n                self.repo.unprotect(target)\n            except DvcException:\n                msg = f\"failed to unprotect '{target}'\"\n                logger.exception(msg)\n                return 1\n        return 0\n\n\ndef add_parser(subparsers, parent_parser):\n    UNPROTECT_HELP = (\n        \"Unprotect tracked files or directories (when hardlinks or symlinks \"\n        \"have been enabled with `dvc config cache.type`)\"\n    )\n    unprotect_parser = subparsers.add_parser(\n        \"unprotect\",\n        parents=[parent_parser],\n        description=append_doc_link(UNPROTECT_HELP, \"unprotect\"),\n        help=UNPROTECT_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    unprotect_parser.add_argument(\n        \"targets\", nargs=\"+\", help=\"Data files/directories to unprotect.\",\n    ).complete = completion.FILE\n    unprotect_parser.set_defaults(func=CmdUnprotect)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/update.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/update.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/update.py", "file_name": "update.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 52, "span_ids": ["imports", "CmdUpdate", "add_parser", "CmdUpdate.run"], "tokens": 301}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdUpdate(CmdBase):\n    def run(self):\n        ret = 0\n        try:\n            self.repo.update(\n                targets=self.args.targets,\n                rev=self.args.rev,\n                recursive=self.args.recursive,\n            )\n        except DvcException:\n            logger.exception(\"failed update data\")\n            ret = 1\n        return ret\n\n\ndef add_parser(subparsers, parent_parser):\n    UPDATE_HELP = \"Update data artifacts imported from other DVC repositories.\"\n    update_parser = subparsers.add_parser(\n        \"update\",\n        parents=[parent_parser],\n        description=append_doc_link(UPDATE_HELP, \"update\"),\n        help=UPDATE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    update_parser.add_argument(\n        \"targets\", nargs=\"+\", help=\"DVC-files to update.\",\n    ).complete = completion.DVC_FILE\n    update_parser.add_argument(\n        \"--rev\",\n        nargs=\"?\",\n        help=\"Git revision (e.g. SHA, branch, tag)\",\n        metavar=\"<commit>\",\n    )\n    update_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Update all stages in the specified directory.\",\n    )\n    update_parser.set_defaults(func=CmdUpdate)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py__DVC_config_objects__NoRemoteError.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py__DVC_config_objects__NoRemoteError.pass", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 38, "span_ids": ["ConfigError.__init__", "ConfigError", "NoRemoteError", "docstring"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"DVC config objects.\"\"\"\nimport logging\nimport os\nimport re\nfrom contextlib import contextmanager\nfrom functools import partial\nfrom urllib.parse import urlparse\n\nimport configobj\nfrom funcy import cached_property, compact, re_find, walk_values\nfrom voluptuous import (\n    ALLOW_EXTRA,\n    All,\n    Any,\n    Coerce,\n    Invalid,\n    Lower,\n    Optional,\n    Range,\n    Schema,\n)\n\nfrom dvc.exceptions import DvcException, NotDvcRepoError\nfrom dvc.path_info import PathInfo\nfrom dvc.utils import relpath\n\nlogger = logging.getLogger(__name__)\n\n\nclass ConfigError(DvcException):\n    \"\"\"DVC config exception.\"\"\"\n\n    def __init__(self, msg):\n        super().__init__(f\"config file error: {msg}\")\n\n\nclass NoRemoteError(ConfigError):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_supported_cache_type_supported_cache_type.return.types": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_supported_cache_type_supported_cache_type.return.types", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 30, "end_line": 47, "span_ids": ["supported_cache_type"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def supported_cache_type(types):\n    \"\"\"Checks if link type config option consists only of valid values.\n\n    Args:\n        types (list/string): type(s) of links that dvc should try out.\n    \"\"\"\n    if types is None:\n        return None\n    if isinstance(types, str):\n        types = [typ.strip() for typ in types.split(\",\")]\n\n    unsupported = set(types) - {\"reflink\", \"hardlink\", \"symlink\", \"copy\"}\n    if unsupported:\n        raise Invalid(\n            \"Unsupported cache type(s): {}\".format(\", \".join(unsupported))\n        )\n\n    return types", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py__Checks_that_value_is_ei_Choices.return.Any_choices_msg_expect": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py__Checks_that_value_is_ei_Choices.return.Any_choices_msg_expect", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 50, "end_line": 66, "span_ids": ["supported_cache_type", "impl:3", "Choices"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# Checks that value is either true or false and converts it to bool\nto_bool = Bool = All(\n    Lower,\n    Any(\"true\", \"false\"),\n    lambda v: v == \"true\",\n    msg=\"expected true or false\",\n)\n\n\ndef Choices(*choices):\n    \"\"\"Checks that value belongs to the specified set of values\n\n    Args:\n        *choices: pass allowed values as arguments, or pass a list or\n            tuple as a single argument\n    \"\"\"\n    return Any(*choices, msg=\"expected one of {}\".format(\", \".join(choices)))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_ByUrl_ByUrl.return.validate": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_ByUrl_ByUrl.return.validate", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 80, "end_line": 96, "span_ids": ["ByUrl"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def ByUrl(mapping):\n    schemas = walk_values(Schema, mapping)\n\n    def validate(data):\n        if \"url\" not in data:\n            raise Invalid(\"expected 'url'\")\n\n        parsed = urlparse(data[\"url\"])\n        # Windows absolute paths should really have scheme == \"\" (local)\n        if os.name == \"nt\" and len(parsed.scheme) == 1 and parsed.netloc == \"\":\n            return schemas[\"\"](data)\n        if parsed.scheme not in schemas:\n            raise Invalid(f\"Unsupported URL type {parsed.scheme}://\")\n\n        return schemas[parsed.scheme](data)\n\n    return validate", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py__Draws_DAG_in_ASCII__make_pager.return.pager": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py__Draws_DAG_in_ASCII__make_pager.return.pager", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["make_pager", "docstring"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Draws DAG in ASCII.\"\"\"\n\nimport logging\nimport math\nimport os\nimport pydoc\nimport sys\n\nfrom grandalf.graphs import Edge, Graph, Vertex\nfrom grandalf.layouts import SugiyamaLayout\nfrom grandalf.routing import EdgeViewer, route_with_lines\n\nfrom dvc.env import DVC_PAGER\nfrom dvc.utils import format_link\n\nlogger = logging.getLogger(__name__)\n\n\nDEFAULT_PAGER = \"less\"\nDEFAULT_PAGER_FORMATTED = \"{} --chop-long-lines --clear-screen\".format(\n    DEFAULT_PAGER\n)\n\n\ndef make_pager(cmd):\n    def pager(text):\n        return pydoc.tempfilepager(pydoc.plain(text), cmd)\n\n    return pager", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_find_pager_find_pager.return.pydoc_plainpager": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_find_pager_find_pager.return.pydoc_plainpager", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 32, "end_line": 49, "span_ids": ["find_pager"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def find_pager():\n    if not sys.stdout.isatty():\n        return pydoc.plainpager\n\n    env_pager = os.getenv(DVC_PAGER)\n    if env_pager:\n        return make_pager(env_pager)\n\n    if os.system(f\"({DEFAULT_PAGER}) 2>{os.devnull}\") == 0:\n        return make_pager(DEFAULT_PAGER_FORMATTED)\n\n    logger.warning(\n        \"Unable to find `less` in the PATH. Check out \"\n        \"{} for more info.\".format(\n            format_link(\"https://man.dvc.org/pipeline/show\")\n        )\n    )\n    return pydoc.plainpager", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_VertexViewer_VertexViewer.w.return.self__w": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_VertexViewer_VertexViewer.w.return.self__w", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 52, "end_line": 75, "span_ids": ["VertexViewer.__init__", "VertexViewer.w", "VertexViewer.h", "VertexViewer"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class VertexViewer:\n    \"\"\"Class to define vertex box boundaries that will be accounted for during\n    graph building by grandalf.\n\n    Args:\n        name (str): name of the vertex.\n    \"\"\"\n\n    HEIGHT = 3  # top and bottom box edges + text\n\n    def __init__(self, name):\n        # pylint: disable=invalid-name\n        self._h = self.HEIGHT  # top and bottom box edges + text\n        self._w = len(name) + 2  # right and left bottom edges + text\n\n    @property\n    def h(self):  # pylint: disable=invalid-name\n        \"\"\"Height of the box.\"\"\"\n        return self._h\n\n    @property\n    def w(self):  # pylint: disable=invalid-name\n        \"\"\"Width of the box.\"\"\"\n        return self._w", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py__Manages_dvc_remotes_th_DataCloud.get_remote.raise_NoRemoteError_error": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py__Manages_dvc_remotes_th_DataCloud.get_remote.raise_NoRemoteError_error", "embedding": null, "metadata": {"file_path": "dvc/data_cloud.py", "file_name": "data_cloud.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 45, "span_ids": ["DataCloud.get_remote", "DataCloud.__init__", "DataCloud", "docstring"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages dvc remotes that user can use with push/pull/status commands.\"\"\"\n\nimport logging\n\nfrom dvc.config import NoRemoteError\nfrom dvc.remote import get_remote\n\nlogger = logging.getLogger(__name__)\n\n\nclass DataCloud:\n    \"\"\"Class that manages dvc remotes.\n\n    Args:\n        repo (dvc.repo.Repo): repo instance that belongs to the repo that\n            we are working on.\n\n    Raises:\n        config.ConfigError: thrown when config has invalid format.\n    \"\"\"\n\n    def __init__(self, repo):\n        self.repo = repo\n\n    def get_remote(self, name=None, command=\"<command>\"):\n        if not name:\n            name = self.repo.config[\"core\"].get(\"remote\")\n\n        if name:\n            return self._init_remote(name)\n\n        if bool(self.repo.config[\"remote\"]):\n            error_msg = (\n                \"no remote specified. Setup default remote with\\n\"\n                \"    dvc remote default <remote name>\\n\"\n                \"or use:\\n\"\n                \"    dvc {} -r <remote name>\".format(command)\n            )\n        else:\n            error_msg = (\n                \"no remote specified. Create a default remote with\\n\"\n                \"    dvc remote add -d <remote name> <remote url>\"\n            )\n\n        raise NoRemoteError(error_msg)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_OutputNotFoundError_StagePathAsOutputError.__init__.super___init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_OutputNotFoundError_StagePathAsOutputError.__init__.super___init___", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 44, "end_line": 76, "span_ids": ["StagePathAsOutputError.__init__", "StagePathAsOutputError", "OutputNotFoundError", "OutputNotFoundError.__init__"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class OutputNotFoundError(DvcException):\n    \"\"\"Thrown if a file/directory is not found as an output in any pipeline.\n\n    Args:\n        output (unicode): path to the file/directory.\n    \"\"\"\n\n    def __init__(self, output, repo=None):\n        self.output = output\n        self.repo = repo\n        super().__init__(\n            \"Unable to find DVC-file with output '{path}'\".format(\n                path=relpath(self.output)\n            )\n        )\n\n\nclass StagePathAsOutputError(DvcException):\n    \"\"\"Thrown if directory that stage is going to be saved in is specified as\n    an output of another stage.\n\n    Args:\n        stage (Stage): a stage that is in some other stages output\n        output (str): an output covering the stage above\n    \"\"\"\n\n    def __init__(self, stage, output):\n        assert isinstance(output, str)\n        super().__init__(\n            \"{stage} is within an output '{output}' of another stage\".format(\n                stage=stage, output=output\n            )\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_MoveNotDataSourceError_MoveNotDataSourceError.__init__.super___init___msg_form": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_MoveNotDataSourceError_MoveNotDataSourceError.__init__.super___init___msg_form", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 107, "end_line": 122, "span_ids": ["MoveNotDataSourceError", "MoveNotDataSourceError.__init__"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class MoveNotDataSourceError(DvcException):\n    \"\"\"Thrown when trying to move a file/directory that is not an output\n    in a data source stage.\n\n    Args:\n        path (str): path to the file/directory.\n    \"\"\"\n\n    def __init__(self, path):\n        msg = (\n            \"move is not permitted for stages that are not data sources. \"\n            \"You need to either move '{path}' to a new location and edit \"\n            \"it by hand, or remove '{path}' and create a new one at the \"\n            \"desired location.\"\n        )\n        super().__init__(msg.format(path=path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__cached_clone__cached_clone.return.repo_path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__cached_clone__cached_clone.return.repo_path", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 288, "end_line": 312, "span_ids": ["_cached_clone"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _cached_clone(url, rev, for_write=False):\n    \"\"\"Clone an external git repo to a temporary directory.\n\n    Returns the path to a local temporary directory with the specified\n    revision checked out. If for_write is set prevents reusing this dir via\n    cache.\n    \"\"\"\n    # even if we have already cloned this repo, we may need to\n    # fetch/fast-forward to get specified rev\n    clone_path, shallow = _clone_default_branch(url, rev, for_write=for_write)\n\n    if not for_write and (url) in CLONES:\n        return CLONES[url][0]\n\n    # Copy to a new dir to keep the clone clean\n    repo_path = tempfile.mkdtemp(\"dvc-erepo\")\n    logger.debug(\"erepo: making a copy of %s clone\", url)\n    copy_tree(clone_path, repo_path)\n\n    # Check out the specified revision\n    if for_write:\n        _git_checkout(repo_path, rev)\n    else:\n        CLONES[url] = (repo_path, shallow)\n    return repo_path", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/istextfile.py__Use_heuristics_to_gues_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/istextfile.py__Use_heuristics_to_gues_", "embedding": null, "metadata": {"file_path": "dvc/istextfile.py", "file_name": "istextfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 35, "span_ids": ["istextfile", "docstring"], "tokens": 298}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Use heuristics to guess if it is a text file or a binary file.\"\"\"\n\n# Based on https://eli.thegreenplace.net/2011/10/19/\n# perls-guess-if-file-is-text-or-binary-implemented-in-python\n\n\nTEXT_CHARS = bytes(range(32, 127)) + b\"\\n\\r\\t\\f\\b\"\n\n\ndef istextfile(fname, blocksize=512, tree=None):\n    \"\"\" Uses heuristics to guess whether the given file is text or binary,\n        by reading a single block of bytes from the file.\n        If more than 30% of the chars in the block are non-text, or there\n        are NUL ('\\x00') bytes in the block, assume this is a binary file.\n    \"\"\"\n    if tree:\n        open_func = tree.open\n    else:\n        open_func = open\n    with open_func(fname, \"rb\") as fobj:\n        block = fobj.read(blocksize)\n\n    if not block:\n        # An empty file is considered a valid text file\n        return True\n\n    if b\"\\x00\" in block:\n        # Files with null bytes are binary\n        return False\n\n    # Use translate's 'deletechars' argument to efficiently remove all\n    # occurrences of TEXT_CHARS from the block\n    nontext = block.translate(None, TEXT_CHARS)\n    return float(len(nontext)) / len(block) <= 0.30", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/lock.py_Lock_Lock.__exit__.self_unlock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/lock.py_Lock_Lock.__exit__.self_unlock_", "embedding": null, "metadata": {"file_path": "dvc/lock.py", "file_name": "lock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 83, "end_line": 131, "span_ids": ["Lock.lock", "Lock.unlock", "Lock._do_lock", "Lock.is_locked", "Lock", "Lock.__enter__", "Lock.files", "Lock.__exit__", "Lock.__init__"], "tokens": 293}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Lock(LockBase):\n    \"\"\"Class for DVC repo lock.\n\n    Uses zc.lockfile as backend.\n    \"\"\"\n\n    def __init__(self, lockfile, friendly=False, **kwargs):\n        super().__init__(lockfile)\n        self._friendly = friendly\n        self._lock = None\n\n    @property\n    def files(self):\n        return [self._lockfile]\n\n    def _do_lock(self):\n        try:\n            with Tqdm(\n                bar_format=\"{desc}\",\n                disable=not self._friendly,\n                desc=(\n                    \"If DVC froze, see `hardlink_lock` in {}\".format(\n                        format_link(\"https://man.dvc.org/config#core\")\n                    )\n                ),\n            ):\n                self._lock = zc.lockfile.LockFile(self._lockfile)\n        except zc.lockfile.LockError:\n            raise LockError(FAILED_TO_LOCK_MESSAGE)\n\n    def lock(self):\n        retries = 6\n        delay = DEFAULT_TIMEOUT / retries\n        lock_retry = retry(retries, LockError, timeout=delay)(self._do_lock)\n        lock_retry()\n\n    def unlock(self):\n        self._lock.close()\n        self._lock = None\n\n    @property\n    def is_locked(self):\n        return bool(self._lock)\n\n    def __enter__(self):\n        self.lock()\n\n    def __exit__(self, typ, value, tbck):\n        self.unlock()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/lock.py_HardlinkLock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/lock.py_HardlinkLock_", "embedding": null, "metadata": {"file_path": "dvc/lock.py", "file_name": "lock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 137, "end_line": 202, "span_ids": ["HardlinkLock.__del__", "make_lock", "HardlinkLock._set_claimfile", "HardlinkLock.lock", "HardlinkLock", "HardlinkLock.__init__"], "tokens": 606}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HardlinkLock(flufl.lock.Lock, LockBase):\n    \"\"\"Class for DVC repo lock.\n\n    Args:\n        lockfile (str): the lock filename\n            in.\n        tmp_dir (str): a directory to store claim files.\n    \"\"\"\n\n    def __init__(\n        self, lockfile, tmp_dir=None, **kwargs\n    ):  # pylint: disable=super-init-not-called\n        import socket\n\n        self._tmp_dir = tmp_dir\n        super().__init__(lockfile)\n\n        # NOTE: this is basically Lock.__init__ copy-paste, except that\n        # instead of using `socket.getfqdn()` we use `socket.gethostname()`\n        # to speed this up. We've seen [1] `getfqdn()` take ~5sec to return\n        # anything, which is way too slow. `gethostname()` is actually a\n        # fallback for `getfqdn()` when it is not able to resolve a\n        # canonical hostname through network. The claimfile that uses\n        # `self._hostname` is still usable, as it uses `pid` and random\n        # number to generate the resulting lock file name, which is unique\n        # enough for our application.\n        #\n        # [1] https://github.com/iterative/dvc/issues/2582\n        self._hostname = socket.gethostname()\n\n        self._lifetime = timedelta(days=365)  # Lock for good by default\n        self._separator = flufl.lock.SEP\n        self._set_claimfile()\n        self._owned = True\n        self._retry_errnos = []\n\n    def lock(self):  # pylint: disable=arguments-differ\n        try:\n            super().lock(timedelta(seconds=DEFAULT_TIMEOUT))\n        except flufl.lock.TimeOutError:\n            raise LockError(FAILED_TO_LOCK_MESSAGE)\n\n    def _set_claimfile(self, pid=None):\n        super()._set_claimfile(pid)\n\n        if self._tmp_dir is not None:\n            # Under Windows file path length is limited so we hash it\n            filename = hashlib.md5(self._claimfile.encode()).hexdigest()\n            self._claimfile = os.path.join(self._tmp_dir, filename + \".lock\")\n\n    # Fix for __del__ bug in flufl.lock [1] which is causing errors on\n    # Python shutdown [2].\n    # [1] https://gitlab.com/warsaw/flufl.lock/issues/7\n    # [2] https://github.com/iterative/dvc/issues/2573\n    def __del__(self):\n        try:\n            if self._owned:\n                self.finalize()\n        except ImportError:\n            pass\n\n\ndef make_lock(lockfile, tmp_dir=None, friendly=False, hardlink_lock=False):\n    cls = HardlinkLock if hardlink_lock else Lock\n    return cls(lockfile, tmp_dir=tmp_dir, friendly=friendly)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_ColorFormatter.format_ColorFormatter.formatTime.return._green_date_nc_form": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_ColorFormatter.format_ColorFormatter.formatTime.return._green_date_nc_form", "embedding": null, "metadata": {"file_path": "dvc/logger.py", "file_name": "logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 57, "end_line": 97, "span_ids": ["ColorFormatter.formatTime", "ColorFormatter.format"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ColorFormatter(logging.Formatter):\n\n    def format(self, record):\n        record.message = record.getMessage()\n        msg = self.formatMessage(record)\n\n        if record.levelname == \"INFO\":\n            return msg\n\n        if record.exc_info:\n            if getattr(record, \"tb_only\", False):\n                cause = \"\"\n            else:\n                cause = \": \".join(_iter_causes(record.exc_info[1]))\n\n            msg = \"{message}{separator}{cause}\".format(\n                message=msg or \"\",\n                separator=\" - \" if msg and cause else \"\",\n                cause=cause,\n            )\n\n            if _is_verbose():\n                msg += _stack_trace(record.exc_info)\n\n        return \"{asctime}{color}{levelname}{nc}: {msg}\".format(\n            asctime=self.formatTime(record, self.datefmt),\n            color=self.color_code[record.levelname],\n            nc=colorama.Fore.RESET,\n            levelname=record.levelname,\n            msg=msg,\n        )\n\n    def formatTime(self, record, datefmt=None):\n        # only show if current level is set to DEBUG\n        # also, skip INFO as it is used for UI\n        if not _is_verbose() or record.levelno == logging.INFO:\n            return \"\"\n\n        return \"{green}{date}{nc} \".format(\n            green=colorama.Fore.GREEN,\n            date=super().formatTime(record, datefmt),\n            nc=colorama.Fore.RESET,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/main.py_main_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/main.py_main_", "embedding": null, "metadata": {"file_path": "dvc/main.py", "file_name": "main.py", "file_type": "text/x-python", "category": "implementation", "start_line": 58, "end_line": 141, "span_ids": ["main"], "tokens": 524}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def main(argv=None):  # noqa: C901\n    \"\"\"Run dvc CLI command.\n\n    Args:\n        argv: optional list of arguments to parse. sys.argv is used by default.\n\n    Returns:\n        int: command's return code.\n    \"\"\"\n    args = None\n    disable_other_loggers()\n\n    outerLogLevel = logger.level\n    try:\n        args = parse_args(argv)\n\n        level = None\n        if args.quiet:\n            level = logging.CRITICAL\n        elif args.verbose == 1:\n            level = logging.DEBUG\n        elif args.verbose > 1:\n            level = logging.TRACE\n\n        if level is not None:\n            logger.setLevel(level)\n\n        logger.trace(args)\n\n        with profile(enable=args.cprofile, dump=args.cprofile_dump):\n            with debug(args.pdb):\n                cmd = args.func(args)\n                ret = cmd.run()\n    except ConfigError:\n        logger.exception(\"configuration error\")\n        ret = 251\n    except KeyboardInterrupt:\n        logger.exception(\"interrupted by the user\")\n        ret = 252\n    except NotDvcRepoError:\n        logger.exception(\"\")\n        ret = 253\n    except DvcParserError:\n        ret = 254\n    except DvcException:\n        ret = 255\n        logger.exception(\"\")\n    except Exception as exc:  # noqa, pylint: disable=broad-except\n        # pylint: disable=no-member\n        if isinstance(exc, OSError) and exc.errno == errno.EMFILE:\n            logger.exception(\n                \"too many open files, please visit \"\n                \"{} to see how to handle this \"\n                \"problem\".format(error_link(\"many-files\")),\n                extra={\"tb_only\": True},\n            )\n        else:\n            from dvc.info import get_dvc_info\n\n            logger.exception(\"unexpected error\")\n\n            dvc_info = get_dvc_info()\n            logger.debug(\"Version info for developers:\\n%s\", dvc_info)\n\n            logger.info(FOOTER)\n        ret = 255\n\n    try:\n        if analytics.is_enabled():\n            analytics.collect_and_send_report(args, ret)\n\n        return ret\n    finally:\n        logger.setLevel(outerLogLevel)\n\n        # Closing pools by-hand to prevent weird messages when closing SSH\n        # connections. See https://github.com/iterative/dvc/issues/3248 for\n        # more info.\n        close_pools()\n\n        # Remove cached repos in the end of the call, these are anonymous\n        # so won't be reused by any other subsequent run anyway.\n        clean_repos()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_URLInfo_URLInfo.from_parts.return.obj": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_URLInfo_URLInfo.from_parts.return.obj", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 121, "end_line": 141, "span_ids": ["URLInfo.__init__", "URLInfo.from_parts", "URLInfo"], "tokens": 183}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class URLInfo(_BasePath):\n    DEFAULT_PORTS = {\"http\": 80, \"https\": 443, \"ssh\": 22, \"hdfs\": 0}\n\n    def __init__(self, url):\n        p = urlparse(url)\n        assert not p.query and not p.params and not p.fragment\n        assert p.password is None\n        self._fill_parts(p.scheme, p.hostname, p.username, p.port, p.path)\n\n    @classmethod\n    def from_parts(\n        cls, scheme=None, host=None, user=None, port=None, path=\"\", netloc=None\n    ):\n        assert bool(host) ^ bool(netloc)\n\n        if netloc is not None:\n            return cls(f\"{scheme}://{netloc}{path}\")\n\n        obj = cls.__new__(cls)\n        obj._fill_parts(scheme, host, user, port, path)\n        return obj", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_URLInfo._base_parts_URLInfo.isin.return.self__base_parts_other": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_URLInfo._base_parts_URLInfo.isin.return.self__base_parts_other", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 143, "end_line": 232, "span_ids": ["URLInfo.name", "URLInfo:4", "URLInfo.replace", "URLInfo.__eq__", "URLInfo.__hash__", "URLInfo._base_parts", "URLInfo.__repr__", "URLInfo.netloc", "URLInfo.bucket", "URLInfo.__div__", "URLInfo.parent", "URLInfo._path", "URLInfo.relative_to", "URLInfo.isin", "URLInfo.path", "URLInfo.url", "URLInfo.parts", "URLInfo.__str__", "URLInfo.parents"], "tokens": 589}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class URLInfo(_BasePath):\n\n    @property\n    def _base_parts(self):\n        return (self.scheme, self.host, self.user, self.port)\n\n    @property\n    def parts(self):\n        return self._base_parts + self._path.parts\n\n    def replace(self, path=None):\n        return self.from_parts(*self._base_parts, path=path)\n\n    @cached_property\n    def url(self):\n        return f\"{self.scheme}://{self.netloc}{self._spath}\"\n\n    def __str__(self):\n        return self.url\n\n    def __repr__(self):\n        return \"{}: '{}'\".format(type(self).__name__, self)\n\n    def __eq__(self, other):\n        if isinstance(other, (str, bytes)):\n            other = self.__class__(other)\n        return (\n            self.__class__ == other.__class__\n            and self._base_parts == other._base_parts\n            and self._path == other._path\n        )\n\n    def __hash__(self):\n        return hash(self.parts)\n\n    def __div__(self, other):\n        return self.replace(path=posixpath.join(self._spath, other))\n\n    __truediv__ = __div__\n\n    @property\n    def path(self):\n        return self._spath\n\n    @cached_property\n    def _path(self):\n        return _URLPathInfo(self._spath)\n\n    @property\n    def name(self):\n        return self._path.name\n\n    @cached_property\n    def netloc(self):\n        netloc = self.host\n        if self.user:\n            netloc = self.user + \"@\" + netloc\n        if self.port and int(self.port) != self.DEFAULT_PORTS.get(self.scheme):\n            netloc += \":\" + str(self.port)\n        return netloc\n\n    @property\n    def bucket(self):\n        return self.netloc\n\n    @property\n    def parent(self):\n        return self.replace(path=self._path.parent)\n\n    @property\n    def parents(self):\n        return _URLPathParents(self)\n\n    def relative_to(self, other):\n        if isinstance(other, (str, bytes)):\n            other = self.__class__(other)\n        if self.__class__ != other.__class__:\n            msg = f\"'{self}' has incompatible class with '{other}'\"\n            raise ValueError(msg)\n        if self._base_parts != other._base_parts:\n            msg = f\"'{self}' does not start with '{other}'\"\n            raise ValueError(msg)\n        return self._path.relative_to(other._path)\n\n    def isin(self, other):\n        if isinstance(other, (str, bytes)):\n            other = self.__class__(other)\n        elif self.__class__ != other.__class__:\n            return False\n        return self._base_parts == other._base_parts and self._path.isin(\n            other._path\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_HTTPURLInfo._extra_parts_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_HTTPURLInfo._extra_parts_", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 299, "end_line": 335, "span_ids": ["HTTPURLInfo.__eq__", "WebDAVURLInfo", "WebDAVURLInfo.url", "HTTPURLInfo._extra_parts", "HTTPURLInfo.url", "HTTPURLInfo.parts"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPURLInfo(URLInfo):\n\n    @property\n    def _extra_parts(self):\n        return (self.params, self.query, self.fragment)\n\n    @property\n    def parts(self):\n        return self._base_parts + self._path.parts + self._extra_parts\n\n    @cached_property\n    def url(self):\n        return \"{}://{}{}{}{}{}\".format(\n            self.scheme,\n            self.netloc,\n            self._spath,\n            (\";\" + self.params) if self.params else \"\",\n            (\"?\" + self.query) if self.query else \"\",\n            (\"#\" + self.fragment) if self.fragment else \"\",\n        )\n\n    def __eq__(self, other):\n        if isinstance(other, (str, bytes)):\n            other = self.__class__(other)\n        return (\n            self.__class__ == other.__class__\n            and self._base_parts == other._base_parts\n            and self._path == other._path\n            and self._extra_parts == other._extra_parts\n        )\n\n\nclass WebDAVURLInfo(URLInfo):\n    @cached_property\n    def url(self):\n        return \"{}://{}{}\".format(\n            self.scheme.replace(\"webdav\", \"http\"), self.netloc, self._spath\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/progress.py__Manages_progress_bars__Tqdm.update_to.self_update_current_sel": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/progress.py__Manages_progress_bars__Tqdm.update_to.self_update_current_sel", "embedding": null, "metadata": {"file_path": "dvc/progress.py", "file_name": "progress.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 118, "span_ids": ["Tqdm.update_msg", "Tqdm.update_to", "Tqdm.__init__", "Tqdm", "docstring"], "tokens": 837}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages progress bars for DVC repo.\"\"\"\n\nimport logging\nimport sys\nfrom threading import RLock\n\nfrom tqdm import tqdm\n\nfrom dvc.utils import env2bool\n\nlogger = logging.getLogger(__name__)\ntqdm.set_lock(RLock())\n\n\nclass Tqdm(tqdm):\n    \"\"\"\n    maximum-compatibility tqdm-based progressbars\n    \"\"\"\n\n    BAR_FMT_DEFAULT = (\n        \"{percentage:3.0f}% {desc}|{bar}|\"\n        \"{postfix[info]}{n_fmt}/{total_fmt}\"\n        \" [{elapsed}<{remaining}, {rate_fmt:>11}]\"\n    )\n    # nested bars should have fixed bar widths to align nicely\n    BAR_FMT_DEFAULT_NESTED = (\n        \"{percentage:3.0f}%|{bar:10}|{desc:{ncols_desc}.{ncols_desc}}\"\n        \"{postfix[info]}{n_fmt}/{total_fmt}\"\n        \" [{elapsed}<{remaining}, {rate_fmt:>11}]\"\n    )\n    BAR_FMT_NOTOTAL = (\n        \"{desc}{bar:b}|{postfix[info]}{n_fmt} [{elapsed}, {rate_fmt:>11}]\"\n    )\n    BYTES_DEFAULTS = {\n        \"unit\": \"B\",\n        \"unit_scale\": True,\n        \"unit_divisor\": 1024,\n        \"miniters\": 1,\n    }\n\n    def __init__(\n        self,\n        iterable=None,\n        disable=None,\n        level=logging.ERROR,\n        desc=None,\n        leave=False,\n        bar_format=None,\n        bytes=False,  # pylint: disable=W0622\n        file=None,\n        total=None,\n        postfix=None,\n        **kwargs\n    ):\n        \"\"\"\n        bytes   : shortcut for\n            `unit='B', unit_scale=True, unit_divisor=1024, miniters=1`\n        desc  : persists after `close()`\n        level  : effective logging level for determining `disable`;\n            used only if `disable` is unspecified\n        disable  : If (default: None) or False,\n            will be determined by logging level.\n            May be overridden to `True` due to non-TTY status.\n            Skip override by specifying env var `DVC_IGNORE_ISATTY`.\n        kwargs  : anything accepted by `tqdm.tqdm()`\n        \"\"\"\n        kwargs = kwargs.copy()\n        if bytes:\n            kwargs = {**self.BYTES_DEFAULTS, **kwargs}\n        else:\n            kwargs.setdefault(\"unit_scale\", total > 999 if total else True)\n        if file is None:\n            file = sys.stderr\n        # auto-disable based on `logger.level`\n        if not disable:\n            disable = logger.getEffectiveLevel() > level\n        # auto-disable based on TTY\n        if (\n            not disable\n            and not env2bool(\"DVC_IGNORE_ISATTY\")\n            and hasattr(file, \"isatty\")\n        ):\n            disable = not file.isatty()\n        super().__init__(\n            iterable=iterable,\n            disable=disable,\n            leave=leave,\n            desc=desc,\n            bar_format=\"!\",\n            lock_args=(False,),\n            total=total,\n            **kwargs\n        )\n        self.postfix = postfix or {\"info\": \"\"}\n        if bar_format is None:\n            if self.__len__():\n                self.bar_format = (\n                    self.BAR_FMT_DEFAULT_NESTED\n                    if self.pos\n                    else self.BAR_FMT_DEFAULT\n                )\n            else:\n                self.bar_format = self.BAR_FMT_NOTOTAL\n        else:\n            self.bar_format = bar_format\n        self.refresh()\n\n    def update_msg(self, msg, n=1):\n        \"\"\"\n        Sets `msg` as a postfix and calls `update(n)`.\n        \"\"\"\n        self.postfix[\"info\"] = \" %s |\" % msg\n        self.update(n)\n\n    def update_to(self, current, total=None):\n        if total:\n            self.total = total  # pylint: disable=W0613,W0201\n        self.update(current - self.n)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/slow_link_detection.py_slow_link_guard_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/slow_link_detection.py_slow_link_guard_", "embedding": null, "metadata": {"file_path": "dvc/remote/slow_link_detection.py", "file_name": "slow_link_detection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 26, "end_line": 48, "span_ids": ["slow_link_guard"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def slow_link_guard(f):\n    @wraps(f)\n    def wrapper(remote, *args, **kwargs):\n        if this.already_displayed:\n            return f(remote, *args, **kwargs)\n\n        cache_conf = remote.repo.config[\"cache\"]\n        slow_link_warning = cache_conf.get(\"slow_link_warning\", True)\n        if not slow_link_warning or cache_conf.get(\"type\"):\n            return f(remote, *args, **kwargs)\n\n        start = time.time()\n        result = f(remote, *args, **kwargs)\n        delta = time.time() - start\n\n        if delta >= this.timeout_seconds:\n            logger.warning(this.message)\n            this.already_displayed = True\n\n        return result\n\n    return wrapper", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py__find_all_targets__find_all_targets.return._target_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py__find_all_targets__find_all_targets.return._target_", "embedding": null, "metadata": {"file_path": "dvc/repo/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 109, "end_line": 124, "span_ids": ["_find_all_targets"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _find_all_targets(repo, target, recursive):\n    if os.path.isdir(target) and recursive:\n        return [\n            os.fspath(path)\n            for path in Tqdm(\n                repo.tree.walk_files(target),\n                desc=\"Searching \" + target,\n                bar_format=Tqdm.BAR_FMT_NOTOTAL,\n                unit=\"file\",\n            )\n            if not repo.is_dvc_internal(os.fspath(path))\n            if not is_dvc_file(os.fspath(path))\n            if not repo.scm.belongs_to_scm(os.fspath(path))\n            if not repo.scm.is_tracked(os.fspath(path))\n        ]\n    return [target]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py__create_stages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py__create_stages_", "embedding": null, "metadata": {"file_path": "dvc/repo/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 152, "end_line": 195, "span_ids": ["_create_stages"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _create_stages(\n    repo, targets, fname, pbar=None, external=False, glob=False, desc=None,\n):\n    from dvc.stage import Stage, create_stage, restore_meta\n\n    expanded_targets = glob_targets(targets, glob=glob)\n\n    stages = []\n    for out in Tqdm(\n        expanded_targets,\n        desc=\"Creating DVC-files\",\n        disable=len(expanded_targets) < LARGE_DIR_SIZE,\n        unit=\"file\",\n    ):\n        path, wdir, out = resolve_paths(repo, out)\n        stage = create_stage(\n            Stage,\n            repo,\n            fname or path,\n            wdir=wdir,\n            outs=[out],\n            external=external,\n        )\n        restore_meta(stage)\n        if stage.can_be_skipped:\n            stage = None\n        else:\n            Dvcfile(repo, stage.path).remove()\n            if desc:\n                stage.outs[0].desc = desc\n\n        repo._reset()  # pylint: disable=protected-access\n\n        if not stage:\n            if pbar is not None:\n                pbar.total -= 1\n            continue\n\n        stages.append(stage)\n        if pbar is not None:\n            pbar.update_msg(out)\n\n    return stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/brancher.py_from_funcy_import_group_b_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/brancher.py_from_funcy_import_group_b_", "embedding": null, "metadata": {"file_path": "dvc/repo/brancher.py", "file_name": "brancher.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 73, "span_ids": ["brancher", "imports"], "tokens": 499}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from funcy import group_by\n\nfrom dvc.repo.experiments.utils import exp_commits\nfrom dvc.tree.local import LocalTree\n\n\ndef brancher(  # noqa: E302\n    self,\n    revs=None,\n    all_branches=False,\n    all_tags=False,\n    all_commits=False,\n    all_experiments=False,\n    sha_only=False,\n):\n    \"\"\"Generator that iterates over specified revisions.\n\n    Args:\n        revs (list): a list of revisions to iterate over.\n        all_branches (bool): iterate over all available branches.\n        all_commits (bool): iterate over all commits.\n        all_tags (bool): iterate over all available tags.\n        sha_only (bool): only return git SHA for a revision.\n\n    Yields:\n        str: the display name for the currently selected tree, it could be:\n            - a git revision identifier\n            - empty string it there is no branches to iterate over\n            - \"workspace\" if there are uncommitted changes in the SCM repo\n    \"\"\"\n    if not any([revs, all_branches, all_tags, all_commits, all_experiments]):\n        yield \"\"\n        return\n\n    saved_tree = self.tree\n    revs = revs.copy() if revs else []\n\n    scm = self.scm\n\n    self.tree = LocalTree(self, {\"url\": self.root_dir}, use_dvcignore=True)\n    yield \"workspace\"\n\n    if revs and \"workspace\" in revs:\n        revs.remove(\"workspace\")\n\n    if all_commits:\n        revs = scm.list_all_commits()\n    else:\n        if all_branches:\n            revs.extend(scm.list_branches())\n\n        if all_tags:\n            revs.extend(scm.list_tags())\n\n    if all_experiments:\n        revs.extend(exp_commits(scm))\n\n    try:\n        if revs:\n            for sha, names in group_by(scm.resolve_rev, revs).items():\n                self.tree = scm.get_tree(\n                    sha, use_dvcignore=True, dvcignore_root=self.root_dir\n                )\n                # ignore revs that don't contain repo root\n                # (i.e. revs from before a subdir=True repo was init'ed)\n                if self.tree.exists(self.root_dir):\n                    if sha_only:\n                        yield sha\n                    else:\n                        yield \", \".join(names)\n    finally:\n        self.tree = saved_tree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/checkout.py_logging_get_all_files_numbers.return.sum_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/checkout.py_logging_get_all_files_numbers.return.sum_", "embedding": null, "metadata": {"file_path": "dvc/repo/checkout.py", "file_name": "checkout.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 43, "span_ids": ["imports", "_get_unused_links", "_fspath_dir", "get_all_files_numbers"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom typing import TYPE_CHECKING, Set\n\nfrom dvc.exceptions import (\n    CheckoutError,\n    CheckoutErrorSuggestGit,\n    NoOutputOrStageError,\n)\nfrom dvc.progress import Tqdm\nfrom dvc.utils import relpath\n\nfrom . import locked\n\nif TYPE_CHECKING:\n    from . import Repo\n    from .stage import StageInfo\n\nlogger = logging.getLogger(__name__)\n\n\ndef _get_unused_links(repo):\n    used = [\n        out.fspath\n        for stage in repo.stages\n        for out in stage.outs\n        if out.scheme == \"local\"\n    ]\n    return repo.state.get_unused_links(used)\n\n\ndef _fspath_dir(path):\n    if not os.path.exists(str(path)):\n        return str(path)\n\n    path = relpath(path)\n    return os.path.join(path, \"\") if os.path.isdir(path) else path\n\n\ndef get_all_files_numbers(pairs):\n    return sum(\n        stage.get_all_files_number(filter_info) for stage, filter_info in pairs\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/get.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/get.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/get.py", "file_name": "get.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["imports", "get", "GetDVCFileError.__init__", "GetDVCFileError"], "tokens": 419}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nimport shortuuid\n\nfrom dvc.exceptions import DvcException\nfrom dvc.utils import resolve_output\nfrom dvc.utils.fs import remove\n\nlogger = logging.getLogger(__name__)\n\n\nclass GetDVCFileError(DvcException):\n    def __init__(self):\n        super().__init__(\n            \"the given path is a DVC-file, you must specify a data file \"\n            \"or a directory\"\n        )\n\n\ndef get(url, path, out=None, rev=None):\n    from dvc.dvcfile import is_valid_filename\n    from dvc.external_repo import external_repo\n\n    out = resolve_output(path, out)\n\n    if is_valid_filename(out):\n        raise GetDVCFileError()\n\n    # Creating a directory right beside the output to make sure that they\n    # are on the same filesystem, so we could take the advantage of\n    # reflink and/or hardlink. Not using tempfile.TemporaryDirectory\n    # because it will create a symlink to tmpfs, which defeats the purpose\n    # and won't work with reflink/hardlink.\n    dpath = os.path.dirname(os.path.abspath(out))\n    tmp_dir = os.path.join(dpath, \".\" + str(shortuuid.uuid()))\n\n    # Try any links possible to avoid data duplication.\n    #\n    # Not using symlink, because we need to remove cache after we\n    # are done, and to make that work we would have to copy data\n    # over anyway before removing the cache, so we might just copy\n    # it right away.\n    #\n    # Also, we can't use theoretical \"move\" link type here, because\n    # the same cache file might be used a few times in a directory.\n    cache_types = [\"reflink\", \"hardlink\", \"copy\"]\n    try:\n        with external_repo(\n            url=url, rev=rev, cache_dir=tmp_dir, cache_types=cache_types\n        ) as repo:\n            repo.get_external(path, out)\n    finally:\n        remove(tmp_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/pull.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/pull.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/pull.py", "file_name": "pull.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 49, "span_ids": ["imports", "pull"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.repo import locked\nfrom dvc.utils import glob_targets\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\ndef pull(\n    self,\n    targets=None,\n    jobs=None,\n    remote=None,\n    all_branches=False,\n    with_deps=False,\n    all_tags=False,\n    force=False,\n    recursive=False,\n    all_commits=False,\n    run_cache=False,\n    glob=False,\n):\n    if isinstance(targets, str):\n        targets = [targets]\n\n    expanded_targets = glob_targets(targets, glob=glob)\n\n    processed_files_count = self.fetch(\n        expanded_targets,\n        jobs,\n        remote=remote,\n        all_branches=all_branches,\n        all_tags=all_tags,\n        all_commits=all_commits,\n        with_deps=with_deps,\n        recursive=recursive,\n        run_cache=run_cache,\n    )\n    stats = self.checkout(\n        targets=expanded_targets,\n        with_deps=with_deps,\n        force=force,\n        recursive=recursive,\n    )\n\n    stats[\"fetched\"] = processed_files_count\n    return stats", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py__edit_rwlock__infos_to_str.return._n_join_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py__edit_rwlock__infos_to_str.return._n_join_", "embedding": null, "metadata": {"file_path": "dvc/rwlock.py", "file_name": "rwlock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 37, "end_line": 59, "span_ids": ["_edit_rwlock", "_infos_to_str"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@contextmanager\ndef _edit_rwlock(lock_dir):\n    path = os.path.join(lock_dir, \"rwlock\")\n    try:\n        with open(path) as fobj:\n            lock = SCHEMA(json.load(fobj))\n    except FileNotFoundError:\n        lock = SCHEMA({})\n    except json.JSONDecodeError as exc:\n        raise RWLockFileCorruptedError(path) from exc\n    except Invalid as exc:\n        raise RWLockFileFormatError(path) from exc\n    lock[\"read\"] = defaultdict(list, lock[\"read\"])\n    lock[\"write\"] = defaultdict(dict, lock[\"write\"])\n    yield lock\n    with open(path, \"w+\") as fobj:\n        json.dump(lock, fobj)\n\n\ndef _infos_to_str(infos):\n    return \"\\n\".join(\n        \"  (PID {}): {}\".format(info[\"pid\"], info[\"cmd\"]) for info in infos\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py__check_blockers__check_blockers.for_path_info_in_waiters_.raise_LockError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py__check_blockers__check_blockers.for_path_info_in_waiters_.raise_LockError_", "embedding": null, "metadata": {"file_path": "dvc/rwlock.py", "file_name": "rwlock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 66, "end_line": 87, "span_ids": ["_check_blockers"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _check_blockers(lock, info, *, mode, waiters):\n    for path_info in waiters:\n        blockers = [\n            blocker\n            for path, infos in lock[mode].items()\n            if path_info.overlaps(path)\n            for blocker in (infos if isinstance(infos, list) else [infos])\n            if blocker != info\n        ]\n\n        if not blockers:\n            continue\n\n        raise LockError(\n            \"'{path}' is busy, it is being blocked by:\\n\"\n            \"{blockers}\\n\"\n            \"\\n\"\n            \"If there are no processes with such PIDs, you can manually remove\"\n            \"'.dvc/tmp/rwlock' and try again.\".format(\n                path=str(path_info), blockers=_infos_to_str(blockers)\n            )\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py__acquire_read__release_read.for_url_in_changes_.if_not_lock_read_.del_lock_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py__acquire_read__release_read.for_url_in_changes_.if_not_lock_read_.del_lock_read_", "embedding": null, "metadata": {"file_path": "dvc/rwlock.py", "file_name": "rwlock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 90, "end_line": 140, "span_ids": ["_acquire_read", "_acquire_write", "_release_read", "_release_write"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _acquire_read(lock, info, path_infos):\n    changes = []\n\n    for path_info in path_infos:\n        url = path_info.url\n\n        readers = lock[\"read\"][url]\n        if info in readers:\n            continue\n\n        changes.append(url)\n        readers.append(info)\n\n    return changes\n\n\ndef _acquire_write(lock, info, path_infos):\n    changes = []\n\n    for path_info in path_infos:\n        url = path_info.url\n\n        if lock[\"write\"][url] == info:\n            continue\n\n        changes.append(url)\n        lock[\"write\"][url] = info\n\n    return changes\n\n\ndef _release_write(lock, info, changes):\n    for url in changes:\n        assert \"write\" in lock\n        assert url in lock[\"write\"]\n        assert lock[\"write\"][url] == info\n        del lock[\"write\"][url]\n        if not lock[\"write\"]:\n            del lock[\"write\"]\n\n\ndef _release_read(lock, info, changes):\n    for url in changes:\n        assert \"read\" in lock\n        assert url in lock[\"read\"]\n        assert info in lock[\"read\"][url]\n        lock[\"read\"][url].remove(info)\n        if not lock[\"read\"][url]:\n            del lock[\"read\"][url]\n        if not lock[\"read\"]:\n            del lock[\"read\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py_rwlock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py_rwlock_", "embedding": null, "metadata": {"file_path": "dvc/rwlock.py", "file_name": "rwlock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 143, "end_line": 177, "span_ids": ["rwlock"], "tokens": 322}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@contextmanager\ndef rwlock(tmp_dir, cmd, read, write):\n    \"\"\"Create non-thread-safe RWLock for PathInfos.\n\n    Args:\n        tmp_dir (str): existing directory where to create the rwlock file.\n        cmd (str): command that will be working on these PathInfos.\n        read ([PathInfo]): PathInfos that are going to be read.\n        write ([PathInfo]): PathInfos that are going to be written.\n\n    Raises:\n        LockError: raised if PathInfo we want to read is being written to by\n            another command or if PathInfo we want to write is being written\n            to or read from by another command.\n        RWLockFileCorruptedError: raised if rwlock file is not a valid JSON.\n        RWLockFileFormatError: raised if rwlock file is a valid JSON, but\n            has internal format that doesn't pass our schema validation.\n    \"\"\"\n    info = {\"pid\": os.getpid(), \"cmd\": cmd}\n\n    with _edit_rwlock(tmp_dir) as lock:\n\n        _check_blockers(lock, info, mode=\"write\", waiters=read + write)\n        _check_blockers(lock, info, mode=\"read\", waiters=write)\n\n        rchanges = _acquire_read(lock, info, read)\n        wchanges = _acquire_write(lock, info, write)\n\n    try:\n        yield\n    finally:\n        with _edit_rwlock(tmp_dir) as lock:\n            _release_write(lock, info, wchanges)\n            _release_read(lock, info, rchanges)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.get_unused_links_State.remove_links.for_chunk_unused_in_to_ch.self__execute_cmd_tuple_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.get_unused_links_State.remove_links.for_chunk_unused_in_to_ch.self__execute_cmd_tuple_", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 479, "end_line": 515, "span_ids": ["State.get_unused_links", "State.remove_links"], "tokens": 273}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def get_unused_links(self, used):\n        \"\"\"Removes all saved links except the ones that are used.\n\n        Args:\n            used (list): list of used links that should not be removed.\n        \"\"\"\n        unused = []\n\n        self._execute(f\"SELECT * FROM {self.LINK_STATE_TABLE}\")\n        for row in self.cursor:\n            relative_path, inode, mtime = row\n            inode = self._from_sqlite(inode)\n            path = os.path.join(self.root_dir, relative_path)\n\n            if path in used or not self.tree.exists(path):\n                continue\n\n            actual_inode = get_inode(path)\n            actual_mtime, _ = get_mtime_and_size(path, self.tree)\n\n            if (inode, mtime) == (actual_inode, actual_mtime):\n                logger.debug(\"Removing '%s' as unused link.\", path)\n                unused.append(relative_path)\n\n        return unused\n\n    def remove_links(self, unused):\n        for path in unused:\n            remove(path)\n\n        for chunk_unused in to_chunks(\n            unused, chunk_size=SQLITE_MAX_VARIABLES_NUMBER\n        ):\n            cmd = \"DELETE FROM {} WHERE path IN ({})\".format(\n                self.LINK_STATE_TABLE, \",\".join([\"?\"] * len(chunk_unused))\n            )\n            self._execute(cmd, tuple(chunk_unused))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py__connect_sqlite_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py__connect_sqlite_", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 481, "end_line": 507, "span_ids": ["_connect_sqlite", "_build_sqlite_uri"], "tokens": 315}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _connect_sqlite(filename, options):\n    # Connect by URI was added in Python 3.4 and sqlite 3.7.7,\n    # we ignore options, which should be fine unless repo is on old NFS/CIFS\n    if sqlite3.sqlite_version_info < (3, 7, 7):\n        return sqlite3.connect(filename)\n\n    uri = _build_sqlite_uri(filename, options)\n    return sqlite3.connect(uri, uri=True)\n\n\ndef _build_sqlite_uri(filename, options):\n    # In the doc mentioned below we only need to replace ? -> %3f and\n    # # -> %23, but, if present, we also need to replace % -> %25 first\n    # (happens when we are on a weird FS that shows urlencoded filenames\n    # instead of proper ones) to not confuse sqlite.\n    uri_path = filename.replace(\"%\", \"%25\")\n\n    # Convert filename to uri according to https://www.sqlite.org/uri.html, 3.1\n    uri_path = uri_path.replace(\"?\", \"%3f\").replace(\"#\", \"%23\")\n    if os.name == \"nt\":\n        uri_path = uri_path.replace(\"\\\\\", \"/\")\n        uri_path = re.sub(r\"^([a-z]:)\", \"/\\\\1\", uri_path, flags=re.I)\n    uri_path = re.sub(r\"/+\", \"/\", uri_path)\n\n    # Empty netloc, params and fragment\n    return urlunparse((\"file\", \"\", uri_path, \"\", urlencode(options), \"\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_errno_System.symlink.try_.except_OSError_as_exc_.raise_DvcException_faile": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_errno_System.symlink.try_.except_OSError_as_exc_.raise_DvcException_faile", "embedding": null, "metadata": {"file_path": "dvc/system.py", "file_name": "system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 46, "span_ids": ["System", "imports", "System.is_unix", "System.hardlink", "System.symlink", "System.copy"], "tokens": 218}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport logging\nimport os\nimport platform\nimport shutil\nimport sys\n\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\nif (\n    platform.system() == \"Windows\"\n    and sys.version_info < (3, 8)\n    and sys.getwindowsversion() >= (6, 2)\n):\n    try:\n        import speedcopy\n\n        speedcopy.patch_copyfile()\n    except ImportError:\n        pass\n\n\nclass System:\n    @staticmethod\n    def is_unix():\n        return os.name != \"nt\"\n\n    @staticmethod\n    def copy(src, dest):\n        return shutil.copyfile(src, dest)\n\n    @staticmethod\n    def hardlink(source, link_name):\n        try:\n            os.link(source, link_name)\n        except OSError as exc:\n            raise DvcException(\"failed to link\") from exc\n\n    @staticmethod\n    def symlink(source, link_name):\n        try:\n            os.symlink(source, link_name)\n        except OSError as exc:\n            raise DvcException(\"failed to symlink\") from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System._getdirinfo_System._getdirinfo.return.Info_GetFileInformationB": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System._getdirinfo_System._getdirinfo.return.Info_GetFileInformationB", "embedding": null, "metadata": {"file_path": "dvc/system.py", "file_name": "system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 119, "end_line": 158, "span_ids": ["System._getdirinfo"], "tokens": 289}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class System:\n\n    @staticmethod\n    def _getdirinfo(path):\n        from collections import namedtuple\n\n        from win32file import (  # pylint: disable=import-error\n            FILE_FLAG_BACKUP_SEMANTICS,\n            FILE_FLAG_OPEN_REPARSE_POINT,\n            FILE_SHARE_READ,\n            OPEN_EXISTING,\n            CreateFileW,\n            GetFileInformationByHandle,\n        )\n\n        # NOTE: use FILE_FLAG_OPEN_REPARSE_POINT to open symlink itself and not\n        # the target See https://docs.microsoft.com/en-us/windows/desktop/api/\n        # fileapi/nf-fileapi-createfilew#symbolic-link-behavior\n        flags = FILE_FLAG_BACKUP_SEMANTICS | FILE_FLAG_OPEN_REPARSE_POINT\n\n        hfile = CreateFileW(\n            path, 0, FILE_SHARE_READ, None, OPEN_EXISTING, flags, None\n        )\n\n        # See BY_HANDLE_FILE_INFORMATION structure from fileapi.h\n        Info = namedtuple(\n            \"BY_HANDLE_FILE_INFORMATION\",\n            [\n                \"dwFileAttributes\",\n                \"ftCreationTime\",\n                \"ftLastAccessTime\",\n                \"ftLastWriteTime\",\n                \"dwVolumeSerialNumber\",\n                \"nFileSizeHigh\",\n                \"nFileSizeLow\",\n                \"nNumberOfLinks\",\n                \"nFileIndexHigh\",\n                \"nFileIndexLow\",\n            ],\n        )\n\n        return Info(*GetFileInformationByHandle(hfile))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System.is_symlink_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System.is_symlink_", "embedding": null, "metadata": {"file_path": "dvc/system.py", "file_name": "system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 187, "end_line": 214, "span_ids": ["System.is_hardlink", "System.is_symlink"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class System:\n\n    @staticmethod\n    def is_symlink(path):\n        path = os.fspath(path)\n\n        if System.is_unix():\n            return os.path.islink(path)\n\n        # https://docs.microsoft.com/en-us/windows/desktop/fileio/\n        # file-attribute-constants\n        from winnt import (  # pylint: disable=import-error\n            FILE_ATTRIBUTE_REPARSE_POINT,\n        )\n\n        if os.path.lexists(path):\n            info = System._getdirinfo(path)\n            return info.dwFileAttributes & FILE_ATTRIBUTE_REPARSE_POINT\n        return False\n\n    @staticmethod\n    def is_hardlink(path):\n        path = os.fspath(path)\n\n        if System.is_unix():\n            return os.stat(path).st_nlink > 1\n\n        info = System._getdirinfo(path)\n        return info.nNumberOfLinks > 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater._get_update_instructions_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater._get_update_instructions_", "embedding": null, "metadata": {"file_path": "dvc/updater.py", "file_name": "updater.py", "file_type": "text/x-python", "category": "implementation", "start_line": 125, "end_line": 163, "span_ids": ["Updater.is_enabled", "Updater._get_update_instructions"], "tokens": 339}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Updater:\n\n    def _get_update_instructions(self):\n        instructions = {\n            \"pip\": \"Run `{yellow}pip{reset} install dvc \"\n            \"{blue}--upgrade{reset}`\",\n            \"rpm\": \"Run `{yellow}yum{reset} update dvc`\",\n            \"brew\": \"Run `{yellow}brew{reset} upgrade dvc`\",\n            \"deb\": (\n                \"Run `{yellow}apt-get{reset} install\"\n                \" {blue}--only-upgrade{reset} dvc`\"\n            ),\n            \"binary\": (\n                \"To upgrade follow these steps:\\n\"\n                \"1. Uninstall dvc binary\\n\"\n                \"2. Go to {blue}https://dvc.org{reset}\\n\"\n                \"3. Download and install new binary\"\n            ),\n            \"conda\": \"Run `{yellow}conda{reset} update dvc`\",\n            \"choco\": \"Run `{yellow}choco{reset} upgrade dvc`\",\n            None: (\n                \"Find the latest release at\\n\"\n                \"{blue}https://github.com/iterative/dvc/releases/latest{reset}\"\n            ),\n        }\n\n        package_manager = PKG\n        if package_manager in (\"osxpkg\", \"exe\"):\n            package_manager = \"binary\"\n\n        return instructions[package_manager]\n\n    def is_enabled(self):\n        enabled = to_bool(\n            Config(validate=False).get(\"core\", {}).get(\"check_update\", \"true\")\n        )\n        logger.debug(\n            \"Check for update is {}abled.\".format(\"en\" if enabled else \"dis\")\n        )\n        return enabled", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_file_md5_file_md5.return._None_None_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_file_md5_file_md5.return._None_None_", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 45, "end_line": 84, "span_ids": ["file_md5"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def file_md5(fname, tree=None):\n    \"\"\" get the (md5 hexdigest, md5 digest) of a file \"\"\"\n    from dvc.istextfile import istextfile\n    from dvc.progress import Tqdm\n\n    if tree:\n        exists_func = tree.exists\n        stat_func = tree.stat\n        open_func = tree.open\n    else:\n        exists_func = os.path.exists\n        stat_func = os.stat\n        open_func = open\n\n    if exists_func(fname):\n        hash_md5 = hashlib.md5()\n        binary = not istextfile(fname, tree=tree)\n        size = stat_func(fname).st_size\n        no_progress_bar = True\n        if size >= LARGE_FILE_SIZE:\n            no_progress_bar = False\n            msg = (\n                \"Computing md5 for a large file '{}'. This is only done once.\"\n            )\n            logger.info(msg.format(relpath(fname)))\n        name = relpath(fname)\n\n        with Tqdm(\n            desc=name,\n            disable=no_progress_bar,\n            total=size,\n            bytes=True,\n            leave=False,\n        ) as pbar:\n            with open_func(fname, \"rb\") as fobj:\n                _fobj_md5(fobj, hash_md5, binary, pbar.update)\n\n        return (hash_md5.hexdigest(), hash_md5.digest())\n\n    return (None, None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_fix_env_fix_env.return.env": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_fix_env_fix_env.return.env", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 143, "end_line": 210, "span_ids": ["fix_env"], "tokens": 647}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def fix_env(env=None):\n    \"\"\"Fix env variables modified by PyInstaller [1] and pyenv [2].\n    [1] http://pyinstaller.readthedocs.io/en/stable/runtime-information.html\n    [2] https://github.com/pyenv/pyenv/issues/985\n    \"\"\"\n    if env is None:\n        env = os.environ.copy()\n    else:\n        env = env.copy()\n\n    if is_binary():\n        lp_key = \"LD_LIBRARY_PATH\"\n        lp_orig = env.get(lp_key + \"_ORIG\", None)\n        if lp_orig is not None:\n            env[lp_key] = lp_orig\n        else:\n            env.pop(lp_key, None)\n\n    # Unlike PyInstaller, pyenv doesn't leave backups of original env vars\n    # when it modifies them. If we look into the shim, pyenv and pyenv-exec,\n    # we can figure out that the PATH is modified like this:\n    #\n    #     PATH=$PYENV_BIN_PATH:${bin_path}:${plugin_bin}:$PATH\n    #\n    # where\n    #\n    #     PYENV_BIN_PATH - might not start with $PYENV_ROOT if we are running\n    #         `system` version of the command, see pyenv-exec source code.\n    #     bin_path - might not start with $PYENV_ROOT as it runs realpath on\n    #         it, but always has `libexec` part in it, see pyenv source code.\n    #     plugin_bin - might contain more than 1 entry, which start with\n    #         $PYENV_ROOT, see pyenv source code.\n    #\n    # Also, we know that whenever pyenv is running, it exports these env vars:\n    #\n    #     PYENV_DIR\n    #     PYENV_HOOK_PATH\n    #     PYENV_VERSION\n    #     PYENV_ROOT\n    #\n    # So having this, we can make a rightful assumption about what parts of the\n    # PATH we need to remove in order to get the original PATH.\n    path = env.get(\"PATH\", \"\")\n    parts = path.split(\":\")\n    bin_path = parts[1] if len(parts) > 2 else \"\"\n    pyenv_dir = env.get(\"PYENV_DIR\")\n    pyenv_hook_path = env.get(\"PYENV_HOOK_PATH\")\n    pyenv_version = env.get(\"PYENV_VERSION\")\n    pyenv_root = env.get(\"PYENV_ROOT\")\n\n    env_matches = all([pyenv_dir, pyenv_hook_path, pyenv_version, pyenv_root])\n\n    bin_path_matches = os.path.basename(bin_path) == \"libexec\"\n\n    # NOTE: we don't support pyenv-win\n    if os.name != \"nt\" and env_matches and bin_path_matches:\n        # removing PYENV_BIN_PATH and bin_path\n        parts = parts[2:]\n\n        if parts:\n            # removing plugin_bin from the left\n            plugin_bin = os.path.join(pyenv_root, \"plugins\")\n            while parts[0].startswith(plugin_bin):\n                del parts[0]\n\n        env[\"PATH\"] = \":\".join(parts)\n\n    return env", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_get_mtime_and_size_get_mtime_and_size.return.str_mtime_str_size_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_get_mtime_and_size_get_mtime_and_size.return.str_mtime_str_size_", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 60, "span_ids": ["get_mtime_and_size"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def get_mtime_and_size(path, tree):\n\n    if tree.isdir(path):\n        size = 0\n        files_mtimes = {}\n        for file_path in tree.walk_files(path):\n            try:\n                stats = tree.stat(file_path)\n            except OSError as exc:\n                # NOTE: broken symlink case.\n                if exc.errno != errno.ENOENT:\n                    raise\n                continue\n            size += stats.st_size\n            files_mtimes[os.fspath(file_path)] = stats.st_mtime\n\n        # We track file changes and moves, which cannot be detected with simply\n        # max(mtime(f) for f in non_ignored_files)\n        mtime = dict_md5(files_mtimes)\n    else:\n        base_stat = tree.stat(path)\n        size = base_stat.st_size\n        mtime = base_stat.st_mtime\n        mtime = int(nanotime.timestamp(mtime))\n\n    # State of files handled by dvc is stored in db as TEXT.\n    # We cast results to string for later comparisons with stored values.\n    return str(mtime), str(size)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_BasePathNotInCheckedPathException_contains_symlink_up_to.return.contains_symlink_up_to_os": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_BasePathNotInCheckedPathException_contains_symlink_up_to.return.contains_symlink_up_to_os", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 63, "end_line": 84, "span_ids": ["BasePathNotInCheckedPathException.__init__", "BasePathNotInCheckedPathException", "contains_symlink_up_to"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BasePathNotInCheckedPathException(DvcException):\n    def __init__(self, path, base_path):\n        msg = \"Path: {} does not overlap with base path: {}\".format(\n            path, base_path\n        )\n        super().__init__(msg)\n\n\ndef contains_symlink_up_to(path, base_path):\n    base_path = os.fspath(base_path)\n    path = os.fspath(path)\n\n    if base_path not in path:\n        raise BasePathNotInCheckedPathException(path, base_path)\n\n    if path == base_path:\n        return False\n    if System.is_symlink(path):\n        return True\n    if os.path.dirname(path) == path:\n        return False\n    return contains_symlink_up_to(os.path.dirname(path), base_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_move_move.shutil_move_tmp_dst_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_move_move.shutil_move_tmp_dst_", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 87, "end_line": 113, "span_ids": ["move"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def move(src, dst, mode=None):\n    \"\"\"Atomically move src to dst and chmod it with mode.\n\n    Moving is performed in two stages to make the whole operation atomic in\n    case src and dst are on different filesystems and actual physical copying\n    of data is happening.\n    \"\"\"\n\n    dst = os.path.abspath(dst)\n    tmp = f\"{dst}.{uuid()}\"\n\n    try:\n        if mode is not None:\n            os.chmod(src, mode)\n    except OSError as e:\n        if e.errno not in [errno.EACCES, errno.EPERM]:\n            raise\n        else:\n            raise FileOwnershipError(src)\n\n    if os.path.islink(src):\n        shutil.copy(src, tmp)\n        _unlink(src, _chmod)\n    else:\n        shutil.move(src, tmp)\n\n    shutil.move(tmp, dst)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py__chmod_path_isin.return.child_parent_and_child": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py__chmod_path_isin.return.child_parent_and_child", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 111, "end_line": 153, "span_ids": ["_chmod", "path_isin", "_unlink", "remove"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _chmod(func, p, excinfo):  # pylint: disable=unused-argument\n    perm = os.lstat(p).st_mode\n    perm |= stat.S_IWRITE\n\n    try:\n        os.chmod(p, perm)\n    except OSError as exc:\n        # broken symlink or file is not owned by us\n        if exc.errno not in [errno.ENOENT, errno.EPERM]:\n            raise\n\n    func(p)\n\n\ndef _unlink(path, onerror):\n    try:\n        os.unlink(path)\n    except OSError:\n        onerror(os.unlink, path, sys.exc_info())\n\n\ndef remove(path):\n    logger.debug(\"Removing '%s'\", path)\n\n    try:\n        if os.path.isdir(path):\n            shutil.rmtree(path, onerror=_chmod)\n        else:\n            _unlink(path, _chmod)\n    except OSError as exc:\n        if exc.errno != errno.ENOENT:\n            raise\n\n\ndef path_isin(child, parent):\n    \"\"\"Check if given `child` path is inside `parent`.\"\"\"\n\n    def normalize_path(path):\n        return os.path.normpath(path)\n\n    parent = os.path.join(normalize_path(parent), \"\")\n    child = normalize_path(child)\n    return child != parent and child.startswith(parent)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_makedirs_makedirs.try_.finally_.os_umask_umask_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_makedirs_makedirs.try_.finally_.os_umask_umask_", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 156, "end_line": 168, "span_ids": ["makedirs"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def makedirs(path, exist_ok=False, mode=None):\n    if mode is None:\n        os.makedirs(path, exist_ok=exist_ok)\n        return\n\n    # utilize umask to set proper permissions since Python 3.7 the `mode`\n    # `makedirs` argument no longer affects the file permission bits of\n    # newly-created intermediate-level directories.\n    umask = os.umask(0o777 - mode)\n    try:\n        os.makedirs(path, exist_ok=exist_ok)\n    finally:\n        os.umask(umask)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_copyfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_copyfile_", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 171, "end_line": 210, "span_ids": ["walk_files", "copyfile", "copy_fobj_to_file"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def copyfile(src, dest, no_progress_bar=False, name=None):\n    \"\"\"Copy file with progress bar\"\"\"\n    from dvc.progress import Tqdm\n\n    name = name if name else os.path.basename(dest)\n    total = os.stat(src).st_size\n\n    if os.path.isdir(dest):\n        dest = os.path.join(dest, os.path.basename(src))\n\n    try:\n        System.reflink(src, dest)\n    except DvcException:\n        with open(src, \"rb\") as fsrc, open(dest, \"wb+\") as fdest:\n            with Tqdm.wrapattr(\n                fdest,\n                \"write\",\n                desc=name,\n                disable=no_progress_bar,\n                total=total,\n                bytes=True,\n            ) as fdest_wrapped:\n                while True:\n                    buf = fsrc.read(LOCAL_CHUNK_SIZE)\n                    if not buf:\n                        break\n                    fdest_wrapped.write(buf)\n\n\ndef copy_fobj_to_file(fsrc, dest):\n    \"\"\"Copy contents of open file object to destination path.\"\"\"\n    with open(dest, \"wb+\") as fdest:\n        shutil.copyfileobj(fsrc, fdest)\n\n\ndef walk_files(directory):\n    for root, _, files in os.walk(directory):\n        for f in files:\n            yield os.path.join(root, f)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/http.py_io_open_url.with_iter_url_url_as_re.if_mode_rb_.else_.yield_io_TextIOWrapper_by": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/http.py_io_open_url.with_iter_url_url_as_re.if_mode_rb_.else_.yield_io_TextIOWrapper_by", "embedding": null, "metadata": {"file_path": "dvc/utils/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["imports", "open_url"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\nfrom contextlib import contextmanager\n\nfrom dvc.utils.stream import IterStream\n\n\n@contextmanager\ndef open_url(url, mode=\"r\", encoding=None):\n    \"\"\"Opens an url as a readable stream.\n\n    Resumes on connection error.\n    Url could be a string or a callable returning a string.\n    \"\"\"\n    assert mode in {\"r\", \"rt\", \"rb\"}\n\n    with iter_url(url) as (response, it):\n        bytes_stream = IterStream(it)\n\n        if mode == \"rb\":\n            yield bytes_stream\n        else:\n            encoding = encoding or response.encoding\n            yield io.TextIOWrapper(bytes_stream, encoding=encoding)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/pkg.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/pkg.py__", "embedding": null, "metadata": {"file_path": "dvc/utils/pkg.py", "file_name": "pkg.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 6, "span_ids": ["impl"], "tokens": 37}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "try:\n    # file is created during dvc build\n    from .build import PKG  # noqa, pylint:disable=unused-import\nexcept ImportError:\n    PKG = None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/fastentrypoints.py__noqa_D300_D400_TEMPLATE.r_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/fastentrypoints.py__noqa_D300_D400_TEMPLATE.r_", "embedding": null, "metadata": {"file_path": "fastentrypoints.py", "file_name": "fastentrypoints.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["docstring"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# noqa: D300,D400\nimport re\n\nfrom setuptools.command import easy_install\n\nTEMPLATE = r\"\"\"\n# -*- coding: utf-8 -*-\n# EASY-INSTALL-ENTRY-SCRIPT: '{3}','{4}','{5}'\n__requires__ = '{3}'\nimport re\nimport sys\n\nfrom {0} import {1}\n\nif __name__ == '__main__':\n    sys.argv[0] = re.sub(r'(-script\\.pyw?|\\.exe)?$', '', sys.argv[0])\n    sys.exit({2}())\n\"\"\".lstrip()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/fastentrypoints.py_get_args_easy_install.ScriptWriter.get_args.get_args": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/fastentrypoints.py_get_args_easy_install.ScriptWriter.get_args.get_args", "embedding": null, "metadata": {"file_path": "fastentrypoints.py", "file_name": "fastentrypoints.py", "file_type": "text/x-python", "category": "implementation", "start_line": 58, "end_line": 89, "span_ids": ["impl:3", "get_args"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@classmethod\ndef get_args(cls, dist, header=None):  # noqa: D205,D400\n    \"\"\"\n    Yield write_script() argument tuples for a distribution's\n    console_scripts and gui_scripts entry points.\n    \"\"\"\n    if header is None:\n        # pylint: disable=E1101\n        header = cls.get_header()\n    spec = str(dist.as_requirement())\n    for type_ in \"console\", \"gui\":\n        group = type_ + \"_scripts\"\n        for name, ep in dist.get_entry_map(group).items():\n            # ensure_safe_name\n            if re.search(r\"[\\\\/]\", name):\n                raise ValueError(\"Path separators not allowed in script names\")\n            script_text = TEMPLATE.format(\n                ep.module_name,\n                ep.attrs[0],\n                \".\".join(ep.attrs),\n                spec,\n                group,\n                name,\n            )\n            # pylint: disable=E1101,protected-access\n            args = cls._get_script_args(type_, name, header, script_text)\n            for res in args:\n                yield res\n\n\n# pylint: disable=E1101\neasy_install.ScriptWriter.get_args = get_args", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/fastentrypoints.py_main_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/fastentrypoints.py_main_", "embedding": null, "metadata": {"file_path": "fastentrypoints.py", "file_name": "fastentrypoints.py", "file_type": "text/x-python", "category": "implementation", "start_line": 92, "end_line": 123, "span_ids": ["main"], "tokens": 240}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def main():\n    import os\n    import shutil\n    import sys\n\n    dests = sys.argv[1:] or [\".\"]\n    filename = re.sub(r\"\\.pyc$\", \".py\", __file__)\n\n    for dst in dests:\n        shutil.copy(filename, dst)\n        manifest_path = os.path.join(dst, \"MANIFEST.in\")\n        setup_path = os.path.join(dst, \"setup.py\")\n\n        # Insert the include statement to MANIFEST.in if not present\n        with open(manifest_path, \"a+\") as manifest:\n            manifest.seek(0)\n            manifest_content = manifest.read()\n            if \"include fastentrypoints.py\" not in manifest_content:\n                manifest.write(\n                    (\"\\n\" if manifest_content else \"\")\n                    + \"include fastentrypoints.py\"\n                )\n\n        # Insert the import statement to setup.py if not present\n        with open(setup_path, \"a+\") as setup:\n            setup.seek(0)\n            setup_content = setup.read()\n            if \"import fastentrypoints\" not in setup_content:\n                setup.seek(0)\n                setup.truncate()\n                setup.write(\"import fastentrypoints\\n\" + setup_content)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.system.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.system.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-dvc.system.py", "file_name": "hook-dvc.system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 5, "span_ids": ["imports"], "tokens": 19}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nif os.name == \"nt\":\n    hiddenimports = [\"win32file\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-win32file.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-win32file.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-win32file.py", "file_name": "hook-win32file.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 2, "span_ids": ["impl"], "tokens": 8}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "hiddenimports = [\"win32timezone\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_importlib.util_build_py.run._build_py_run_self_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_importlib.util_build_py.run._build_py_run_self_", "embedding": null, "metadata": {"file_path": "setup.py", "file_name": "setup.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 45, "span_ids": ["build_py", "imports", "build_py.run", "build_py.pin_version"], "tokens": 413}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import importlib.util\nimport os\n\nfrom setuptools import find_packages, setup\nfrom setuptools.command.build_py import build_py as _build_py\n\n# Prevents pkg_resources import in entry point script,\n# see https://github.com/ninjaaron/fast-entry_points.\n# This saves about 200 ms on startup time for non-wheel installs.\ntry:\n    import fastentrypoints  # noqa: F401, pylint: disable=unused-import\nexcept ImportError:\n    pass  # not able to import when installing through pre-commit\n\n\n# Read package meta-data from version.py\n# see https://packaging.python.org/guides/single-sourcing-package-version/\npkg_dir = os.path.dirname(os.path.abspath(__file__))\nversion_path = os.path.join(pkg_dir, \"dvc\", \"version.py\")\nspec = importlib.util.spec_from_file_location(\"dvc.version\", version_path)\ndvc_version = importlib.util.module_from_spec(spec)\nspec.loader.exec_module(dvc_version)\nversion = dvc_version.__version__  # noqa: F821\n\n\n# To achieve consistency between the build version and the one provided\n# by your package during runtime, you need to **pin** the build version.\n#\n# This custom class will replace the version.py module with a **static**\n# `__version__` that your package can read at runtime, assuring consistency.\n#\n# References:\n#   - https://docs.python.org/3.7/distutils/extending.html\n#   - https://github.com/python/mypy\nclass build_py(_build_py):\n    def pin_version(self):\n        path = os.path.join(self.build_lib, \"dvc\")\n        self.mkpath(path)\n        with open(os.path.join(path, \"version.py\"), \"w\") as fobj:\n            fobj.write(\"# AUTOGENERATED at build time by setup.py\\n\")\n            fobj.write('__version__ = \"{}\"\\n'.format(version))\n\n    def run(self):\n        self.execute(self.pin_version, ())\n        _build_py.run(self)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_TestGitFixture_TestGitFixture.tearDown.super_tearDown_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_TestGitFixture_TestGitFixture.tearDown.super_tearDown_", "embedding": null, "metadata": {"file_path": "tests/basic_env.py", "file_name": "basic_env.py", "file_type": "text/x-python", "category": "implementation", "start_line": 116, "end_line": 141, "span_ids": ["TestGitFixture.setUp", "TestGitFixture", "TestGitFixture.tearDown"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGitFixture(TestDirFixture):\n    N_RETRIES = 5\n\n    def setUp(self):\n        super().setUp()\n        # NOTE: handles EAGAIN error on BSD systems (osx in our case).\n        # Otherwise when running tests you might get this exception:\n        #\n        #    GitCommandNotFound: Cmd('git') not found due to:\n        #        OSError('[Errno 35] Resource temporarily unavailable')\n        retries = self.N_RETRIES\n        while True:\n            try:\n                self.git = Repo.init()\n                break\n            except GitCommandNotFound:\n                retries -= 1\n                if not retries:\n                    raise\n\n        self.git.index.add([self.CODE])\n        self.git.index.commit(\"add code\")\n\n    def tearDown(self):\n        self.git.close()\n        super().tearDown()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_filecmp_from_tests_utils_import_g": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_filecmp_from_tests_utils_import_g", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 33, "span_ids": ["imports"], "tokens": 222}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import filecmp\nimport logging\nimport os\nimport shutil\nimport stat\nimport textwrap\nimport time\n\nimport colorama\nimport pytest\nfrom mock import call, patch\n\nimport dvc as dvc_module\nfrom dvc.cache import Cache\nfrom dvc.dvcfile import DVC_FILE_SUFFIX\nfrom dvc.exceptions import (\n    DvcException,\n    OutputDuplicationError,\n    OverlappingOutputPathsError,\n    RecursiveAddingWhileUsingFilename,\n)\nfrom dvc.hash_info import HashInfo\nfrom dvc.main import main\nfrom dvc.output.base import OutputAlreadyTrackedError, OutputIsStageFileError\nfrom dvc.repo import Repo as DvcRepo\nfrom dvc.stage import Stage\nfrom dvc.system import System\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils import LARGE_DIR_SIZE, file_md5, relpath\nfrom dvc.utils.fs import path_isin\nfrom dvc.utils.serialize import YAMLFileCorruptedError, load_yaml\nfrom tests.basic_env import TestDvc\nfrom tests.utils import get_gitignore_content", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_unicode_TestAddDirectoryRecursive.test.self_assertEqual_len_stag": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_unicode_TestAddDirectoryRecursive.test.self_assertEqual_len_stag", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 59, "end_line": 90, "span_ids": ["test_add_unicode", "test_add_unsupported_file", "TestAddDirectoryRecursive", "TestAddDirectoryRecursive.test", "test_add_directory"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_unicode(tmp_dir, dvc):\n    with open(\"\\xe1\", \"wb\") as fd:\n        fd.write(b\"something\")\n\n    (stage,) = dvc.add(\"\\xe1\")\n\n    assert os.path.isfile(stage.path)\n\n\ndef test_add_unsupported_file(dvc):\n    with pytest.raises(DvcException):\n        dvc.add(\"unsupported://unsupported\")\n\n\ndef test_add_directory(tmp_dir, dvc):\n    (stage,) = tmp_dir.dvc_gen({\"dir\": {\"file\": \"file\"}})\n\n    assert stage is not None\n    assert len(stage.deps) == 0\n    assert len(stage.outs) == 1\n\n    hash_info = stage.outs[0].hash_info\n\n    dir_info = dvc.cache.local.load_dir_cache(hash_info)\n    for path, _ in dir_info.trie.items():\n        assert \"\\\\\" not in path\n\n\nclass TestAddDirectoryRecursive(TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.DATA_DIR, recursive=True)\n        self.assertEqual(len(stages), 2)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddDirWithExistingCache_TestAddModifiedDir.test.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddDirWithExistingCache_TestAddModifiedDir.test.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 131, "end_line": 157, "span_ids": ["TestAddModifiedDir.test", "TestAddDirWithExistingCache", "TestAddModifiedDir", "TestAddDirWithExistingCache.test"], "tokens": 208}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddDirWithExistingCache(TestDvc):\n    def test(self):\n        dname = \"a\"\n        fname = os.path.join(dname, \"b\")\n        os.mkdir(dname)\n        shutil.copyfile(self.FOO, fname)\n\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n        stages = self.dvc.add(dname)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n\n\nclass TestAddModifiedDir(TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)\n        os.unlink(self.DATA)\n\n        time.sleep(2)\n\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertEqual(len(stages), 1)\n        self.assertTrue(stages[0] is not None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_file_in_dir_test_add_file_in_dir.assert_stage_outs_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_file_in_dir_test_add_file_in_dir.assert_stage_outs_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 160, "end_line": 173, "span_ids": ["test_add_file_in_dir"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_file_in_dir(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"subdir\": {\"subdata\": \"subdata content\"}}})\n    subdir_path = os.path.join(\"dir\", \"subdir\", \"subdata\")\n\n    (stage,) = dvc.add(subdir_path)\n\n    assert stage is not None\n    assert len(stage.deps) == 0\n    assert len(stage.outs) == 1\n    assert stage.relpath == subdir_path + \".dvc\"\n\n    # Current dir should not be taken into account\n    assert stage.wdir == os.path.dirname(stage.path)\n    assert stage.outs[0].def_path == \"subdata\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_update_state_entry_for_file_after_add_test_should_update_state_entry_for_file_after_add.None_10": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_update_state_entry_for_file_after_add_test_should_update_state_entry_for_file_after_add.None_10", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 334, "end_line": 360, "span_ids": ["test_should_update_state_entry_for_file_after_add"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_should_update_state_entry_for_file_after_add(mocker, dvc, tmp_dir):\n    file_md5_counter = mocker.spy(dvc_module.tree.local, \"file_md5\")\n    tmp_dir.gen(\"foo\", \"foo\")\n\n    ret = main([\"config\", \"cache.type\", \"copy\"])\n    assert ret == 0\n\n    ret = main([\"add\", \"foo\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 1\n\n    ret = main([\"status\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 1\n\n    ret = main([\"run\", \"--single-stage\", \"-d\", \"foo\", \"echo foo\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 1\n\n    os.rename(\"foo\", \"foo.back\")\n    ret = main([\"checkout\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 1\n\n    ret = main([\"status\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_update_state_entry_for_directory_after_add_test_should_update_state_entry_for_directory_after_add.None_10": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_update_state_entry_for_directory_after_add_test_should_update_state_entry_for_directory_after_add.None_10", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 363, "end_line": 395, "span_ids": ["test_should_update_state_entry_for_directory_after_add"], "tokens": 272}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_should_update_state_entry_for_directory_after_add(\n    mocker, dvc, tmp_dir\n):\n    file_md5_counter = mocker.spy(dvc_module.tree.local, \"file_md5\")\n\n    tmp_dir.gen({\"data/data\": \"foo\", \"data/data_sub/sub_data\": \"foo\"})\n\n    ret = main([\"config\", \"cache.type\", \"copy\"])\n    assert ret == 0\n\n    ret = main([\"add\", \"data\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 3\n\n    ret = main([\"status\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 3\n\n    ls = \"dir\" if os.name == \"nt\" else \"ls\"\n    ret = main(\n        [\"run\", \"--single-stage\", \"-d\", \"data\", \"{} {}\".format(ls, \"data\")]\n    )\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 3\n\n    os.rename(\"data\", \"data\" + \".back\")\n    ret = main([\"checkout\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 3\n\n    ret = main([\"status\"])\n    assert ret == 0\n    assert file_md5_counter.mock.call_count == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_failed_add_cleanup_test_should_not_track_git_internal_files.for_fname_in_created_stag.assert_git_not_in_fnam": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_failed_add_cleanup_test_should_not_track_git_internal_files.for_fname_in_created_stag.assert_git_not_in_fnam", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 478, "end_line": 502, "span_ids": ["test_should_not_track_git_internal_files", "test_failed_add_cleanup"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_failed_add_cleanup(tmp_dir, scm, dvc):\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    # Add and corrupt a stage file\n    dvc.add(\"foo\")\n    tmp_dir.gen(\"foo.dvc\", \"- broken\\nyaml\")\n\n    with pytest.raises(YAMLFileCorruptedError):\n        dvc.add(\"bar\")\n\n    assert not os.path.exists(\"bar.dvc\")\n\n    gitignore_content = get_gitignore_content()\n    assert \"/bar\" not in gitignore_content\n\n\ndef test_should_not_track_git_internal_files(mocker, dvc, tmp_dir):\n    stage_creator_spy = mocker.spy(dvc_module.repo.add, \"_create_stages\")\n\n    ret = main([\"add\", \"-R\", dvc.root_dir])\n    assert ret == 0\n\n    created_stages_filenames = stage_creator_spy.mock.call_args[0][1]\n    for fname in created_stages_filenames:\n        assert \".git\" not in fname", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddUnprotected_TestAddUnprotected.test.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddUnprotected_TestAddUnprotected.test.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 487, "end_line": 505, "span_ids": ["TestAddUnprotected.test", "TestAddUnprotected"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddUnprotected(TestDvc):\n    def test(self):\n        ret = main([\"config\", \"cache.type\", \"hardlink\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.access(self.FOO, os.W_OK))\n        self.assertTrue(System.is_hardlink(self.FOO))\n\n        ret = main([\"unprotect\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        self.assertFalse(os.access(self.FOO, os.W_OK))\n        self.assertTrue(System.is_hardlink(self.FOO))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_temporary_windows_drive_temporary_windows_drive.if_tear_down_result_0_.raise_RuntimeError_Could": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_temporary_windows_drive_temporary_windows_drive.if_tear_down_result_0_.raise_RuntimeError_Could", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 595, "end_line": 630, "span_ids": ["temporary_windows_drive"], "tokens": 289}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef temporary_windows_drive(tmp_path_factory):\n    import string\n    from ctypes import windll\n\n    import win32api  # pylint: disable=import-error\n    from win32con import DDD_REMOVE_DEFINITION  # pylint: disable=import-error\n\n    drives = [\n        s[0].upper()\n        for s in win32api.GetLogicalDriveStrings().split(\"\\000\")\n        if len(s) > 0\n    ]\n\n    new_drive_name = [\n        letter for letter in string.ascii_uppercase if letter not in drives\n    ][0]\n    new_drive = f\"{new_drive_name}:\"\n\n    target_path = tmp_path_factory.mktemp(\"tmp_windows_drive\")\n\n    set_up_result = windll.kernel32.DefineDosDeviceW(\n        0, new_drive, os.fspath(target_path)\n    )\n    if set_up_result == 0:\n        raise RuntimeError(\"Failed to mount windows drive!\")\n\n    # NOTE: new_drive has form of `A:` and joining it with some relative\n    # path might result in non-existing path (A:path\\\\to)\n    yield os.path.join(new_drive, os.sep)\n\n    tear_down_result = windll.kernel32.DefineDosDeviceW(\n        DDD_REMOVE_DEFINITION, new_drive, os.fspath(target_path)\n    )\n    if tear_down_result == 0:\n        raise RuntimeError(\"Could not unmount windows drive!\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_windows_should_add_when_cache_on_different_drive_test_windows_should_add_when_cache_on_different_drive.filecmp_cmp_file_cache": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_windows_should_add_when_cache_on_different_drive_test_windows_should_add_when_cache_on_different_drive.filecmp_cmp_file_cache", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 545, "end_line": 557, "span_ids": ["test_windows_should_add_when_cache_on_different_drive"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(os.name != \"nt\", reason=\"Windows specific\")\ndef test_windows_should_add_when_cache_on_different_drive(\n    tmp_dir, dvc, temporary_windows_drive\n):\n    dvc.config[\"cache\"][\"dir\"] = temporary_windows_drive\n    dvc.cache = Cache(dvc)\n\n    (stage,) = tmp_dir.dvc_gen({\"file\": \"file\"})\n    cache_path = stage.outs[0].cache_path\n\n    assert path_isin(cache_path, temporary_windows_drive)\n    assert os.path.isfile(cache_path)\n    filecmp.cmp(\"file\", cache_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_readding_dir_should_not_unprotect_all_test_should_not_checkout_when_adding_cached_copy.assert_copy_spy_mock_call": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_readding_dir_should_not_unprotect_all_test_should_not_checkout_when_adding_cached_copy.assert_copy_spy_mock_call", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 648, "end_line": 674, "span_ids": ["test_should_not_checkout_when_adding_cached_copy", "test_readding_dir_should_not_unprotect_all"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_readding_dir_should_not_unprotect_all(tmp_dir, dvc, mocker):\n    tmp_dir.gen(\"dir/data\", \"data\")\n\n    dvc.cache.local.cache_types = [\"symlink\"]\n\n    dvc.add(\"dir\")\n    tmp_dir.gen(\"dir/new_file\", \"new_file_content\")\n\n    unprotect_spy = mocker.spy(LocalTree, \"unprotect\")\n    dvc.add(\"dir\")\n\n    assert not unprotect_spy.mock.called\n    assert System.is_symlink(os.path.join(\"dir\", \"new_file\"))\n\n\ndef test_should_not_checkout_when_adding_cached_copy(tmp_dir, dvc, mocker):\n    dvc.cache.local.cache_types = [\"copy\"]\n\n    tmp_dir.dvc_gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    shutil.copy(\"bar\", \"foo\")\n\n    copy_spy = mocker.spy(dvc.cache.local.tree, \"copy\")\n\n    dvc.add(\"foo\")\n\n    assert copy_spy.mock.call_count == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_relink_on_repeated_add_test_should_relink_on_repeated_add.assert_link_test_func_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_relink_on_repeated_add_test_should_relink_on_repeated_add.assert_link_test_func_fo", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 607, "end_line": 632, "span_ids": ["test_should_relink_on_repeated_add"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"link,new_link,link_test_func\",\n    [\n        (\"hardlink\", \"copy\", lambda path: not System.is_hardlink(path)),\n        (\"symlink\", \"copy\", lambda path: not System.is_symlink(path)),\n        (\"copy\", \"hardlink\", System.is_hardlink),\n        (\"copy\", \"symlink\", System.is_symlink),\n    ],\n)\ndef test_should_relink_on_repeated_add(\n    link, new_link, link_test_func, tmp_dir, dvc\n):\n    from dvc.path_info import PathInfo\n\n    dvc.config[\"cache\"][\"type\"] = link\n\n    tmp_dir.dvc_gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    os.remove(\"foo\")\n    getattr(dvc.cache.local.tree, link)(PathInfo(\"bar\"), PathInfo(\"foo\"))\n\n    dvc.cache.local.cache_types = [new_link]\n\n    dvc.add(\"foo\")\n\n    assert link_test_func(\"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_protect_on_repeated_add_test_should_protect_on_repeated_add.if_link_copy_or_lin.else_.assert_not_os_access_foo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_should_protect_on_repeated_add_test_should_protect_on_repeated_add.if_link_copy_or_lin.else_.assert_not_os_access_foo", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 617, "end_line": 636, "span_ids": ["test_should_protect_on_repeated_add"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"link\", [\"hardlink\", \"symlink\", \"copy\"])\ndef test_should_protect_on_repeated_add(link, tmp_dir, dvc):\n    dvc.cache.local.cache_types = [link]\n\n    tmp_dir.dvc_gen({\"foo\": \"foo\"})\n\n    dvc.unprotect(\"foo\")\n\n    dvc.add(\"foo\")\n\n    assert not os.access(\n        os.path.join(\".dvc\", \"cache\", \"ac\", \"bd18db4cc2f85cedef654fccc4a4d8\"),\n        os.W_OK,\n    )\n\n    # NOTE: Windows symlink perms don't propagate to the target\n    if link == \"copy\" or (link == \"symlink\" and os.name == \"nt\"):\n        assert os.access(\"foo\", os.W_OK)\n    else:\n        assert not os.access(\"foo\", os.W_OK)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_escape_gitignore_entries_test_escape_gitignore_entries.assert_ignored_fname_in_g": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_escape_gitignore_entries_test_escape_gitignore_entries.assert_ignored_fname_in_g", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 639, "end_line": 650, "span_ids": ["test_escape_gitignore_entries"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_escape_gitignore_entries(tmp_dir, scm, dvc):\n    fname = \"file!with*weird#naming_[1].t?t\"\n    ignored_fname = r\"/file\\!with\\*weird\\#naming_\\[1\\].t\\?t\"\n\n    if os.name == \"nt\":\n        # Some characters are not supported by Windows in the filename\n        # https://docs.microsoft.com/en-us/windows/win32/fileio/naming-a-file\n        fname = \"file!with_weird#naming_[1].txt\"\n        ignored_fname = r\"/file\\!with_weird\\#naming_\\[1\\].txt\"\n\n    tmp_dir.dvc_gen(fname, \"...\")\n    assert ignored_fname in get_gitignore_content()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_from_data_dir_test_add_from_data_dir.assert_str_e_value_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_from_data_dir_test_add_from_data_dir.assert_str_e_value_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 653, "end_line": 664, "span_ids": ["test_add_from_data_dir"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_from_data_dir(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen({\"dir\": {\"file1\": \"file1 content\"}})\n\n    tmp_dir.gen({\"dir\": {\"file2\": \"file2 content\"}})\n\n    with pytest.raises(OverlappingOutputPathsError) as e:\n        dvc.add(os.path.join(\"dir\", \"file2\"))\n    assert str(e.value) == (\n        \"Cannot add '{out}', because it is overlapping with other DVC \"\n        \"tracked output: 'dir'.\\n\"\n        \"To include '{out}' in 'dir', run 'dvc commit dir.dvc'\"\n    ).format(out=os.path.join(\"dir\", \"file2\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_not_raises_on_re_add_test_add_empty_files.assert_os_path_exists_sta": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_not_raises_on_re_add_test_add_empty_files.assert_os_path_exists_sta", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 668, "end_line": 683, "span_ids": ["test_add_empty_files", "test_not_raises_on_re_add"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_not_raises_on_re_add(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"file\", \"file content\")\n\n    tmp_dir.gen({\"file2\": \"file2 content\", \"file\": \"modified file\"})\n    dvc.add([\"file2\", \"file\"])\n\n\n@pytest.mark.parametrize(\"link\", [\"hardlink\", \"symlink\", \"copy\"])\ndef test_add_empty_files(tmp_dir, dvc, link):\n    file = \"foo\"\n    dvc.cache.local.cache_types = [link]\n    stages = tmp_dir.dvc_gen(file, \"\")\n\n    assert (tmp_dir / file).exists()\n    assert (tmp_dir / (file + DVC_FILE_SUFFIX)).exists()\n    assert os.path.exists(stages[0].outs[0].cache_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_os_test_get_url.assert_api_get_url_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_os_test_get_url.assert_api_get_url_foo_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["imports", "test_get_url"], "tokens": 249}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\nfrom flaky.flaky_decorator import flaky\nfrom funcy import first, get_in\n\nfrom dvc import api\nfrom dvc.exceptions import FileMissingError, OutputNotFoundError\nfrom dvc.path_info import URLInfo\nfrom dvc.utils.fs import remove\nfrom tests.unit.tree.test_repo import make_subrepo\n\ncloud_names = [\n    \"s3\",\n    \"gs\",\n    \"azure\",\n    \"gdrive\",\n    \"oss\",\n    \"ssh\",\n    \"http\",\n    \"hdfs\",\n    \"webdav\",\n    \"webhdfs\",\n]\nclouds = [pytest.lazy_fixture(cloud) for cloud in cloud_names]\nall_clouds = [pytest.lazy_fixture(\"local_cloud\")] + clouds\n\n# `lazy_fixture` is confusing pylint, pylint: disable=unused-argument\n\n\n@pytest.mark.parametrize(\"remote\", clouds, indirect=True)\ndef test_get_url(tmp_dir, dvc, remote):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    expected_url = URLInfo(remote.url) / \"ac/bd18db4cc2f85cedef654fccc4a4d8\"\n    assert api.get_url(\"foo\") == expected_url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_external_test_get_url_external.assert_api_get_url_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_external_test_get_url_external.assert_api_get_url_foo_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 36, "span_ids": ["test_get_url_external"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"cloud\", clouds)\ndef test_get_url_external(tmp_dir, erepo_dir, cloud):\n    erepo_dir.add_remote(config=cloud.config)\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo\", commit=\"add foo\")\n\n    # Using file url to force clone to tmp repo\n    repo_url = f\"file://{erepo_dir}\"\n    expected_url = URLInfo(cloud.url) / \"ac/bd18db4cc2f85cedef654fccc4a4d8\"\n    assert api.get_url(\"foo\", repo=repo_url) == expected_url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_requires_dvc_test_open.with_api_open_foo_as_f.assert_fd_read_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_requires_dvc_test_open.with_api_open_foo_as_f.assert_fd_read_foo_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 40, "end_line": 59, "span_ids": ["test_open", "test_get_url_requires_dvc"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_url_requires_dvc(tmp_dir, scm):\n    tmp_dir.scm_gen({\"foo\": \"foo\"}, commit=\"initial\")\n\n    with pytest.raises(OutputNotFoundError, match=\"output 'foo'\"):\n        api.get_url(\"foo\", repo=os.fspath(tmp_dir))\n\n    with pytest.raises(OutputNotFoundError, match=\"output 'foo'\"):\n        api.get_url(\"foo\", repo=f\"file://{tmp_dir}\")\n\n\n@pytest.mark.parametrize(\"remote\", all_clouds, indirect=True)\ndef test_open(tmp_dir, dvc, remote):\n    tmp_dir.dvc_gen(\"foo\", \"foo-text\")\n    dvc.push()\n\n    # Remove cache to force download\n    remove(dvc.cache.local.cache_dir)\n\n    with api.open(\"foo\") as fd:\n        assert fd.read() == \"foo-text\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestCacheLinkType_TestCmdCacheDir.test_relative_path.self_assertEqual_len_file": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestCacheLinkType_TestCmdCacheDir.test_relative_path.self_assertEqual_len_file", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 144, "end_line": 184, "span_ids": ["TestCmdCacheDir", "TestCacheLinkType", "TestCacheLinkType.test", "TestCmdCacheDir.test_relative_path", "TestCmdCacheDir.test_abs_path", "TestCmdCacheDir.test"], "tokens": 354}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCacheLinkType(TestDvc):\n    def test(self):\n        ret = main([\"config\", \"cache.type\", \"reflink,copy\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n\nclass TestCmdCacheDir(TestDvc):\n    def test(self):\n        ret = main([\"cache\", \"dir\"])\n        self.assertEqual(ret, 0)\n\n    def test_abs_path(self):\n        dname = os.path.join(os.path.dirname(self._root_dir), \"dir\")\n        ret = main([\"cache\", \"dir\", dname])\n        self.assertEqual(ret, 0)\n\n        config = configobj.ConfigObj(self.dvc.config.files[\"repo\"])\n        self.assertEqual(config[\"cache\"][\"dir\"], dname.replace(\"\\\\\", \"/\"))\n\n    def test_relative_path(self):\n        tmpdir = os.path.realpath(self.mkdtemp())\n        dname = relpath(tmpdir)\n        ret = main([\"cache\", \"dir\", dname])\n        self.assertEqual(ret, 0)\n\n        # NOTE: we are in the repo's root and config is in .dvc/, so\n        # dir path written to config should be just one level above.\n        rel = os.path.join(\"..\", dname)\n        config = configobj.ConfigObj(self.dvc.config.files[\"repo\"])\n        self.assertEqual(config[\"cache\"][\"dir\"], rel.replace(\"\\\\\", \"/\"))\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        subdirs = os.listdir(tmpdir)\n        self.assertEqual(len(subdirs), 1)\n        files = os.listdir(os.path.join(tmpdir, subdirs[0]))\n        self.assertEqual(len(files), 1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_collections_logger.logging_getLogger_dvc_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_collections_logger.logging_getLogger_dvc_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 31, "span_ids": ["imports"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import collections\nimport filecmp\nimport logging\nimport os\nimport shutil\nimport stat\n\nimport pytest\nfrom mock import patch\n\nfrom dvc.dvcfile import DVC_FILE_SUFFIX, PIPELINE_FILE, Dvcfile\nfrom dvc.exceptions import (\n    CheckoutError,\n    CheckoutErrorSuggestGit,\n    ConfirmRemoveError,\n    DvcException,\n    NoOutputOrStageError,\n)\nfrom dvc.main import main\nfrom dvc.repo import Repo as DvcRepo\nfrom dvc.stage import Stage\nfrom dvc.stage.exceptions import StageFileDoesNotExistError\nfrom dvc.system import System\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import walk_files\nfrom dvc.utils.serialize import dump_yaml, load_yaml\nfrom tests.basic_env import TestDvc, TestDvcGit\nfrom tests.func.test_repro import TestRepro\n\nlogger = logging.getLogger(\"dvc\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutTargetRecursiveShouldNotRemoveOtherUsedFiles_TestCheckoutRecursiveNotDirectory.test.assert_stats_added_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutTargetRecursiveShouldNotRemoveOtherUsedFiles_TestCheckoutRecursiveNotDirectory.test.assert_stats_added_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 413, "end_line": 431, "span_ids": ["TestCheckoutTargetRecursiveShouldNotRemoveOtherUsedFiles", "TestCheckoutRecursiveNotDirectory", "TestCheckoutRecursiveNotDirectory.test", "TestCheckoutTargetRecursiveShouldNotRemoveOtherUsedFiles.test"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutTargetRecursiveShouldNotRemoveOtherUsedFiles(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.DATA_DIR, self.FOO, self.BAR])\n        self.assertEqual(0, ret)\n\n        ret = main([\"checkout\", \"-R\", self.DATA_DIR])\n        self.assertEqual(0, ret)\n\n        self.assertTrue(os.path.exists(self.FOO))\n        self.assertTrue(os.path.exists(self.BAR))\n\n\nclass TestCheckoutRecursiveNotDirectory(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(0, ret)\n\n        stats = self.dvc.checkout(targets=[self.FOO + \".dvc\"], recursive=True)\n        assert stats == {\"added\": [], \"modified\": [], \"deleted\": []}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutMovedCacheDirWithSymlinks_TestCheckoutMovedCacheDirWithSymlinks.test.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutMovedCacheDirWithSymlinks_TestCheckoutMovedCacheDirWithSymlinks.test.None_11", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 434, "end_line": 475, "span_ids": ["TestCheckoutMovedCacheDirWithSymlinks.test", "TestCheckoutMovedCacheDirWithSymlinks"], "tokens": 304}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutMovedCacheDirWithSymlinks(TestDvc):\n    def test(self):\n        ret = main([\"config\", \"cache.type\", \"symlink\"])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.DATA_DIR])\n        self.assertEqual(ret, 0)\n\n        self.assertTrue(System.is_symlink(self.FOO))\n        old_foo_link = os.path.realpath(self.FOO)\n\n        self.assertTrue(System.is_symlink(self.DATA))\n        old_data_link = os.path.realpath(self.DATA)\n\n        old_cache_dir = self.dvc.cache.local.cache_dir\n        new_cache_dir = old_cache_dir + \"_new\"\n        os.rename(old_cache_dir, new_cache_dir)\n\n        ret = main([\"cache\", \"dir\", new_cache_dir])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"checkout\", \"-f\"])\n        self.assertEqual(ret, 0)\n\n        self.assertTrue(System.is_symlink(self.FOO))\n        new_foo_link = os.path.realpath(self.FOO)\n\n        self.assertTrue(System.is_symlink(self.DATA))\n        new_data_link = os.path.realpath(self.DATA)\n\n        self.assertEqual(\n            relpath(old_foo_link, old_cache_dir),\n            relpath(new_foo_link, new_cache_dir),\n        )\n\n        self.assertEqual(\n            relpath(old_data_link, old_cache_dir),\n            relpath(new_data_link, new_cache_dir),\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_no_checksum_test_checkout_relink.assert_link_test_func_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_no_checksum_test_checkout_relink.assert_link_test_func_di", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 485, "end_line": 510, "span_ids": ["test_checkout_no_checksum", "test_checkout_relink"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkout_no_checksum(tmp_dir, dvc):\n    tmp_dir.gen(\"file\", \"file content\")\n    stage = dvc.run(\n        outs=[\"file\"], no_exec=True, cmd=\"somecmd\", single_stage=True\n    )\n\n    with pytest.raises(CheckoutError):\n        dvc.checkout([stage.path], force=True)\n\n    assert not os.path.exists(\"file\")\n\n\n@pytest.mark.parametrize(\n    \"link, link_test_func\",\n    [(\"hardlink\", System.is_hardlink), (\"symlink\", System.is_symlink)],\n)\ndef test_checkout_relink(tmp_dir, dvc, link, link_test_func):\n    dvc.cache.local.cache_types = [link]\n\n    tmp_dir.dvc_gen({\"dir\": {\"data\": \"text\"}})\n    dvc.unprotect(\"dir/data\")\n    assert not link_test_func(\"dir/data\")\n\n    stats = dvc.checkout([\"dir.dvc\"], relink=True)\n    assert stats == empty_checkout\n    assert link_test_func(\"dir/data\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_relink_protected_test_checkout_relink_protected.if_link_copy_or_lin.else_.assert_not_os_access_foo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_relink_protected_test_checkout_relink_protected.if_link_copy_or_lin.else_.assert_not_os_access_foo", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 504, "end_line": 519, "span_ids": ["test_checkout_relink_protected"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"link\", [\"hardlink\", \"symlink\", \"copy\"])\ndef test_checkout_relink_protected(tmp_dir, dvc, link):\n    dvc.cache.local.cache_types = [link]\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    dvc.unprotect(\"foo\")\n    assert os.access(\"foo\", os.W_OK)\n\n    stats = dvc.checkout([\"foo.dvc\"], relink=True)\n    assert stats == empty_checkout\n\n    # NOTE: Windows symlink perms don't propagate to the target\n    if link == \"copy\" or (link == \"symlink\" and os.name == \"nt\"):\n        assert os.access(\"foo\", os.W_OK)\n    else:\n        assert not os.access(\"foo\", os.W_OK)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_partial_checkout_test_stats_on_empty_checkout.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_partial_checkout_test_stats_on_empty_checkout.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 522, "end_line": 543, "span_ids": ["test_partial_checkout", "impl:3", "test_stats_on_empty_checkout"], "tokens": 213}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"target\",\n    [os.path.join(\"dir\", \"subdir\"), os.path.join(\"dir\", \"subdir\", \"file\")],\n)\ndef test_partial_checkout(tmp_dir, dvc, target):\n    tmp_dir.dvc_gen({\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}})\n    shutil.rmtree(\"dir\")\n    stats = dvc.checkout([target])\n    assert stats[\"added\"] == [\"dir\" + os.sep]\n    assert list(walk_files(\"dir\")) == [os.path.join(\"dir\", \"subdir\", \"file\")]\n\n\nempty_checkout = {\"added\": [], \"deleted\": [], \"modified\": []}\n\n\ndef test_stats_on_empty_checkout(tmp_dir, dvc, scm):\n    assert dvc.checkout() == empty_checkout\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}},\n        commit=\"initial\",\n    )\n    assert dvc.checkout() == empty_checkout", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_checkout_test_stats_on_checkout.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_checkout_test_stats_on_checkout.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 565, "end_line": 597, "span_ids": ["test_stats_on_checkout"], "tokens": 324}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stats_on_checkout(tmp_dir, dvc, scm):\n    tmp_dir.dvc_gen(\n        {\n            \"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"},\n            \"foo\": \"foo\",\n            \"bar\": \"bar\",\n        },\n        commit=\"initial\",\n    )\n    scm.checkout(\"HEAD~\")\n    stats = dvc.checkout()\n    assert set(stats[\"deleted\"]) == {\"dir\" + os.sep, \"foo\", \"bar\"}\n\n    scm.checkout(\"-\")\n    stats = dvc.checkout()\n    assert set(stats[\"added\"]) == {\"bar\", \"dir\" + os.sep, \"foo\"}\n\n    tmp_dir.gen({\"lorem\": \"lorem\", \"bar\": \"new bar\", \"dir2\": {\"file\": \"file\"}})\n    (tmp_dir / \"foo\").unlink()\n    scm.gitpython.repo.git.rm(\"foo.dvc\")\n    tmp_dir.dvc_add([\"bar\", \"lorem\", \"dir2\"], commit=\"second\")\n\n    scm.checkout(\"HEAD~\")\n    stats = dvc.checkout()\n    assert set(stats[\"modified\"]) == {\"bar\"}\n    assert set(stats[\"added\"]) == {\"foo\"}\n    assert set(stats[\"deleted\"]) == {\"lorem\", \"dir2\" + os.sep}\n\n    scm.checkout(\"-\")\n    stats = dvc.checkout()\n    assert set(stats[\"modified\"]) == {\"bar\"}\n    assert set(stats[\"added\"]) == {\"dir2\" + os.sep, \"lorem\"}\n    assert set(stats[\"deleted\"]) == {\"foo\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_stats_on_failure_test_checkout_stats_on_failure.assert_exc_value_stats_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_stats_on_failure_test_checkout_stats_on_failure.assert_exc_value_stats_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 584, "end_line": 606, "span_ids": ["test_checkout_stats_on_failure"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkout_stats_on_failure(tmp_dir, dvc, scm):\n    tmp_dir.dvc_gen(\n        {\"foo\": \"foo\", \"dir\": {\"subdir\": {\"file\": \"file\"}}, \"other\": \"other\"},\n        commit=\"initial\",\n    )\n    stage = Dvcfile(dvc, \"foo.dvc\").stage\n    tmp_dir.dvc_gen({\"foo\": \"foobar\", \"other\": \"other other\"}, commit=\"second\")\n\n    # corrupt cache\n    cache = stage.outs[0].cache_path\n    os.chmod(cache, 0o644)\n    with open(cache, \"a\") as fd:\n        fd.write(\"destroy cache\")\n\n    scm.checkout(\"HEAD~\")\n    with pytest.raises(CheckoutError) as exc:\n        dvc.checkout(force=True)\n\n    assert exc.value.stats == {\n        **empty_checkout,\n        \"failed\": [\"foo\"],\n        \"modified\": [\"other\"],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_added_file_from_tracked_dir_test_stats_on_added_file_from_tracked_dir.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_added_file_from_tracked_dir_test_stats_on_added_file_from_tracked_dir.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 606, "end_line": 620, "span_ids": ["test_stats_on_added_file_from_tracked_dir"], "tokens": 163}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stats_on_added_file_from_tracked_dir(tmp_dir, dvc, scm):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}},\n        commit=\"initial\",\n    )\n\n    tmp_dir.gen(\"dir/subdir/newfile\", \"newfile\")\n    tmp_dir.dvc_add(\"dir\", commit=\"add newfile\")\n    scm.checkout(\"HEAD~\")\n    assert dvc.checkout() == {**empty_checkout, \"modified\": [\"dir\" + os.sep]}\n    assert dvc.checkout() == empty_checkout\n\n    scm.checkout(\"-\")\n    assert dvc.checkout() == {**empty_checkout, \"modified\": [\"dir\" + os.sep]}\n    assert dvc.checkout() == empty_checkout", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_updated_file_from_tracked_dir_test_stats_on_updated_file_from_tracked_dir.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_updated_file_from_tracked_dir_test_stats_on_updated_file_from_tracked_dir.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 623, "end_line": 637, "span_ids": ["test_stats_on_updated_file_from_tracked_dir"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stats_on_updated_file_from_tracked_dir(tmp_dir, dvc, scm):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}},\n        commit=\"initial\",\n    )\n\n    tmp_dir.gen(\"dir/subdir/file\", \"what file?\")\n    tmp_dir.dvc_add(\"dir\", commit=\"update file\")\n    scm.checkout(\"HEAD~\")\n    assert dvc.checkout() == {**empty_checkout, \"modified\": [\"dir\" + os.sep]}\n    assert dvc.checkout() == empty_checkout\n\n    scm.checkout(\"-\")\n    assert dvc.checkout() == {**empty_checkout, \"modified\": [\"dir\" + os.sep]}\n    assert dvc.checkout() == empty_checkout", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_removed_file_from_tracked_dir_test_stats_on_removed_file_from_tracked_dir.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_removed_file_from_tracked_dir_test_stats_on_removed_file_from_tracked_dir.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 640, "end_line": 654, "span_ids": ["test_stats_on_removed_file_from_tracked_dir"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stats_on_removed_file_from_tracked_dir(tmp_dir, dvc, scm):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}},\n        commit=\"initial\",\n    )\n\n    (tmp_dir / \"dir\" / \"subdir\" / \"file\").unlink()\n    tmp_dir.dvc_add(\"dir\", commit=\"removed file from subdir\")\n    scm.checkout(\"HEAD~\")\n    assert dvc.checkout() == {**empty_checkout, \"modified\": [\"dir\" + os.sep]}\n    assert dvc.checkout() == empty_checkout\n\n    scm.checkout(\"-\")\n    assert dvc.checkout() == {**empty_checkout, \"modified\": [\"dir\" + os.sep]}\n    assert dvc.checkout() == empty_checkout", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_show_changes_does_not_show_summary_test_stats_on_show_changes_does_not_show_summary.with_caplog_at_level_logg.assert_added_not_in_cap": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_on_show_changes_does_not_show_summary_test_stats_on_show_changes_does_not_show_summary.with_caplog_at_level_logg.assert_added_not_in_cap", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 657, "end_line": 673, "span_ids": ["test_stats_on_show_changes_does_not_show_summary"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stats_on_show_changes_does_not_show_summary(\n    tmp_dir, dvc, scm, caplog\n):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}}, \"other\": \"other\"},\n        commit=\"initial\",\n    )\n    scm.checkout(\"HEAD~\")\n\n    with caplog.at_level(logging.INFO, logger=\"dvc\"):\n        caplog.clear()\n        assert main([\"checkout\"]) == 0\n        for out in [\"D\\tdir\" + os.sep, \"D\\tother\"]:\n            assert out in caplog.text\n        assert \"modified\" not in caplog.text\n        assert \"deleted\" not in caplog.text\n        assert \"added\" not in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_does_not_show_changes_by_default_test_checkout_with_relink_existing.assert_stats_empty_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_stats_does_not_show_changes_by_default_test_checkout_with_relink_existing.assert_stats_empty_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 685, "end_line": 709, "span_ids": ["test_stats_does_not_show_changes_by_default", "test_checkout_with_relink_existing"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stats_does_not_show_changes_by_default(tmp_dir, dvc, scm, caplog):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}}, \"other\": \"other\"},\n        commit=\"initial\",\n    )\n    scm.checkout(\"HEAD~\")\n\n    with caplog.at_level(logging.INFO, logger=\"dvc\"):\n        caplog.clear()\n        assert main([\"checkout\", \"--summary\"]) == 0\n        assert \"2 files deleted\" in caplog.text\n        assert \"dir\" not in caplog.text\n        assert \"other\" not in caplog.text\n\n\n@pytest.mark.parametrize(\"link\", [\"hardlink\", \"symlink\", \"copy\"])\ndef test_checkout_with_relink_existing(tmp_dir, dvc, link):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    (tmp_dir / \"foo\").unlink()\n\n    tmp_dir.dvc_gen(\"bar\", \"bar\")\n    dvc.cache.local.cache_types = [link]\n\n    stats = dvc.checkout(relink=True)\n    assert stats == {**empty_checkout, \"added\": [\"foo\"]}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_with_deps_test_checkout_with_deps.assert_set_stats_added_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_with_deps_test_checkout_with_deps.assert_set_stats_added_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 712, "end_line": 730, "span_ids": ["test_checkout_with_deps"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkout_with_deps(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo\"})\n    dvc.run(\n        fname=\"copy_file.dvc\",\n        cmd=\"echo foo > bar\",\n        outs=[\"bar\"],\n        deps=[\"foo\"],\n        single_stage=True,\n    )\n\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / \"foo\").unlink()\n\n    stats = dvc.checkout([\"copy_file.dvc\"], with_deps=False)\n    assert stats == {**empty_checkout, \"added\": [\"bar\"]}\n\n    (tmp_dir / \"bar\").unlink()\n    stats = dvc.checkout([\"copy_file.dvc\"], with_deps=True)\n    assert set(stats[\"added\"]) == {\"foo\", \"bar\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_recursive_test_checkout_recursive.assert_set_stats_added_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_recursive_test_checkout_recursive.assert_set_stats_added_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 720, "end_line": 731, "span_ids": ["test_checkout_recursive"], "tokens": 112}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkout_recursive(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    dvc.add(\"dir\", recursive=True)\n\n    (tmp_dir / \"dir\" / \"foo\").unlink()\n    (tmp_dir / \"dir\" / \"bar\").unlink()\n\n    stats = dvc.checkout([\"dir\"], recursive=True)\n    assert set(stats[\"added\"]) == {\n        os.path.join(\"dir\", \"foo\"),\n        os.path.join(\"dir\", \"bar\"),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_force_test_commit_force.assert_dvc_status_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_force_test_commit_force.assert_dvc_status_stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_commit.py", "file_name": "test_commit.py", "file_type": "text/x-python", "category": "test", "start_line": 23, "end_line": 39, "span_ids": ["test_commit_force"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_commit_force(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"file\": \"text1\", \"file2\": \"text2\"}})\n    (stage,) = dvc.add(\"dir\", no_commit=True)\n\n    assert stage.outs[0].changed_cache()\n\n    tmp_dir.gen(\"dir/file\", \"file content modified\")\n\n    assert stage.outs[0].changed_cache()\n\n    with pytest.raises(StageCommitError):\n        dvc.commit(stage.path)\n\n    assert stage.outs[0].changed_cache()\n\n    dvc.commit(stage.path, force=True)\n    assert dvc.status([stage.path]) == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dependency.py_copy_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dependency.py_copy_", "embedding": null, "metadata": {"file_path": "tests/func/test_dependency.py", "file_name": "test_dependency.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["_get_dep", "imports", "test_scheme"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import copy\n\nimport pytest\n\nfrom dvc.dependency import DEP_MAP, _get\nfrom dvc.stage import Stage\nfrom tests.func.test_output import TESTS as OUT_TESTS\n\nTESTS = copy.copy(OUT_TESTS)\nTESTS.append((\"http://example.com/path/to/file\", \"http\"))\nTESTS.append((\"https://example.com/path/to/file\", \"https\"))\n\n\ndef _get_dep(dvc, path):\n    return _get(Stage(dvc), path, None)\n\n\n@pytest.mark.parametrize(\"url,scheme\", TESTS)\ndef test_scheme(dvc, url, scheme):\n    # pylint: disable=unidiomatic-typecheck\n    assert type(_get_dep(dvc, url)) == DEP_MAP[scheme]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_hashlib_test_added.assert_dvc_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_hashlib_test_added.assert_dvc_diff_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["imports", "digest", "test_no_scm", "test_added"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import hashlib\nimport os\n\nimport pytest\nfrom funcy import first\n\nfrom dvc.exceptions import DvcException\nfrom dvc.utils.fs import remove\n\n\ndef digest(text):\n    return hashlib.md5(bytes(text, \"utf-8\")).hexdigest()\n\n\ndef test_no_scm(tmp_dir, dvc):\n    from dvc.scm.base import NoSCMError\n\n    tmp_dir.dvc_gen(\"file\", \"text\")\n\n    with pytest.raises(NoSCMError):\n        dvc.diff()\n\n\ndef test_added(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"file\", \"text\")\n\n    assert dvc.diff() == {\n        \"added\": [{\"path\": \"file\", \"hash\": digest(\"text\")}],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_no_cache_entry_test_no_cache_entry.assert_dvc_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_no_cache_entry_test_no_cache_entry.assert_dvc_diff_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 60, "span_ids": ["test_no_cache_entry"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_cache_entry(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"file\", \"first\", commit=\"add a file\")\n\n    tmp_dir.dvc_gen({\"dir\": {\"1\": \"1\", \"2\": \"2\"}})\n    tmp_dir.dvc_gen(\"file\", \"second\")\n\n    remove(tmp_dir / \".dvc\" / \"cache\")\n    (tmp_dir / \".dvc\" / \"tmp\" / \"state\").unlink()\n\n    dir_checksum = \"5fb6b29836c388e093ca0715c872fe2a.dir\"\n\n    assert dvc.diff() == {\n        \"added\": [\n            {\"path\": os.path.join(\"dir\", \"\"), \"hash\": dir_checksum},\n            {\"path\": os.path.join(\"dir\", \"1\"), \"hash\": digest(\"1\")},\n            {\"path\": os.path.join(\"dir\", \"2\"), \"hash\": digest(\"2\")},\n        ],\n        \"deleted\": [],\n        \"modified\": [\n            {\n                \"path\": \"file\",\n                \"hash\": {\"old\": digest(\"first\"), \"new\": digest(\"second\")},\n            }\n        ],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_deleted_test_modified.assert_dvc_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_deleted_test_modified.assert_dvc_diff_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 63, "end_line": 89, "span_ids": ["test_modified", "test_deleted"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_deleted(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"file\", \"text\", commit=\"add file\")\n    (tmp_dir / \"file.dvc\").unlink()\n\n    assert dvc.diff() == {\n        \"added\": [],\n        \"deleted\": [{\"path\": \"file\", \"hash\": digest(\"text\")}],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n\n\ndef test_modified(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"file\", \"first\", commit=\"first version\")\n    tmp_dir.dvc_gen(\"file\", \"second\")\n\n    assert dvc.diff() == {\n        \"added\": [],\n        \"deleted\": [],\n        \"modified\": [\n            {\n                \"path\": \"file\",\n                \"hash\": {\"old\": digest(\"first\"), \"new\": digest(\"second\")},\n            }\n        ],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_refs_test_refs.with_pytest_raises_DvcExc.dvc_diff_missing_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_refs_test_refs.with_pytest_raises_DvcExc.dvc_diff_missing_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 92, "end_line": 116, "span_ids": ["test_refs"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_refs(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"file\", \"first\", commit=\"first version\")\n    tmp_dir.dvc_gen(\"file\", \"second\", commit=\"second version\")\n    tmp_dir.dvc_gen(\"file\", \"third\", commit=\"third version\")\n\n    HEAD_2 = digest(\"first\")\n    HEAD_1 = digest(\"second\")\n    HEAD = digest(\"third\")\n\n    assert dvc.diff(\"HEAD~1\") == {\n        \"added\": [],\n        \"deleted\": [],\n        \"modified\": [{\"path\": \"file\", \"hash\": {\"old\": HEAD_1, \"new\": HEAD}}],\n        \"not in cache\": [],\n    }\n\n    assert dvc.diff(\"HEAD~2\", \"HEAD~1\") == {\n        \"added\": [],\n        \"deleted\": [],\n        \"modified\": [{\"path\": \"file\", \"hash\": {\"old\": HEAD_2, \"new\": HEAD_1}}],\n        \"not in cache\": [],\n    }\n\n    with pytest.raises(DvcException, match=r\"unknown Git revision 'missing'\"):\n        dvc.diff(\"missing\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_directories_test_directories.assert_dvc_diff_modify": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_directories_test_directories.assert_dvc_diff_modify", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 119, "end_line": 180, "span_ids": ["test_directories"], "tokens": 573}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_directories(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen({\"dir\": {\"1\": \"1\", \"2\": \"2\"}}, commit=\"add a directory\")\n    tmp_dir.dvc_gen({\"dir\": {\"3\": \"3\"}}, commit=\"add a file\")\n    tmp_dir.dvc_gen({\"dir\": {\"2\": \"two\"}}, commit=\"modify a file\")\n\n    (tmp_dir / \"dir\" / \"2\").unlink()\n    dvc.add(\"dir\")\n    scm.add([\"dir.dvc\"])\n    scm.commit(\"delete a file\")\n\n    # The \":/<text>\" format is a way to specify revisions by commit message:\n    #       https://git-scm.com/docs/revisions\n    #\n    assert dvc.diff(\":/init\", \":/directory\") == {\n        \"added\": [\n            {\n                \"path\": os.path.join(\"dir\", \"\"),\n                \"hash\": \"5fb6b29836c388e093ca0715c872fe2a.dir\",\n            },\n            {\"path\": os.path.join(\"dir\", \"1\"), \"hash\": digest(\"1\")},\n            {\"path\": os.path.join(\"dir\", \"2\"), \"hash\": digest(\"2\")},\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n\n    assert dvc.diff(\":/directory\", \":/modify\") == {\n        \"added\": [{\"path\": os.path.join(\"dir\", \"3\"), \"hash\": digest(\"3\")}],\n        \"deleted\": [],\n        \"modified\": [\n            {\n                \"path\": os.path.join(\"dir\", \"\"),\n                \"hash\": {\n                    \"old\": \"5fb6b29836c388e093ca0715c872fe2a.dir\",\n                    \"new\": \"9b5faf37366b3370fd98e3e60ca439c1.dir\",\n                },\n            },\n            {\n                \"path\": os.path.join(\"dir\", \"2\"),\n                \"hash\": {\"old\": digest(\"2\"), \"new\": digest(\"two\")},\n            },\n        ],\n        \"not in cache\": [],\n    }\n\n    assert dvc.diff(\":/modify\", \":/delete\") == {\n        \"added\": [],\n        \"deleted\": [\n            {\"path\": os.path.join(\"dir\", \"2\"), \"hash\": digest(\"two\")},\n        ],\n        \"modified\": [\n            {\n                \"path\": os.path.join(\"dir\", \"\"),\n                \"hash\": {\n                    \"old\": \"9b5faf37366b3370fd98e3e60ca439c1.dir\",\n                    \"new\": \"83ae82fb367ac9926455870773ff09e6.dir\",\n                },\n            }\n        ],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_os_test_external_repo.with_patch_object_Git_c.assert_mock_call_count_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_os_test_external_repo.with_patch_object_Git_c.assert_mock_call_count_", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["imports", "test_external_repo"], "tokens": 259}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom mock import ANY, patch\n\nfrom dvc.external_repo import CLONES, external_repo\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.scm.git import Git\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import makedirs, remove\nfrom tests.unit.tree.test_repo import make_subrepo\n\n\ndef test_external_repo(erepo_dir):\n    with erepo_dir.chdir():\n        with erepo_dir.branch(\"branch\", new=True):\n            erepo_dir.dvc_gen(\"file\", \"branch\", commit=\"create file on branch\")\n        erepo_dir.dvc_gen(\"file\", \"master\", commit=\"create file on master\")\n\n    url = os.fspath(erepo_dir)\n\n    with patch.object(Git, \"clone\", wraps=Git.clone) as mock:\n        with external_repo(url) as repo:\n            with repo.open_by_relpath(\"file\") as fd:\n                assert fd.read() == \"master\"\n\n        with external_repo(url, rev=\"branch\") as repo:\n            with repo.open_by_relpath(\"file\") as fd:\n                assert fd.read() == \"branch\"\n\n        assert mock.call_count == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_source_change_test_cache_reused.with_external_repo_url_.assert_download_spy_mock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_source_change_test_cache_reused.with_external_repo_url_.assert_download_spy_mock_", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 66, "span_ids": ["test_cache_reused", "test_source_change"], "tokens": 249}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_source_change(erepo_dir):\n    url = os.fspath(erepo_dir)\n    with external_repo(url) as repo:\n        old_rev = repo.scm.get_rev()\n\n    erepo_dir.scm_gen(\"file\", \"text\", commit=\"a change\")\n\n    with external_repo(url) as repo:\n        new_rev = repo.scm.get_rev()\n\n    assert old_rev != new_rev\n\n\ndef test_cache_reused(erepo_dir, mocker, local_cloud):\n    erepo_dir.add_remote(config=local_cloud.config)\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"text\", commit=\"add file\")\n    erepo_dir.dvc.push()\n\n    download_spy = mocker.spy(LocalTree, \"download\")\n\n    # Use URL to prevent any fishy optimizations\n    url = f\"file://{erepo_dir}\"\n    with external_repo(url) as repo:\n        repo.fetch()\n        assert download_spy.mock.call_count == 1\n\n    # Should not download second time\n    erepo_dir.scm.branch(\"branch\")\n    with external_repo(url, \"branch\") as repo:\n        repo.fetch()\n        assert download_spy.mock.call_count == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_fs.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_fs.py_os_", "embedding": null, "metadata": {"file_path": "tests/func/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 37, "span_ids": ["imports", "test_copyfile", "test_makedirs_permissions"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport stat\n\nimport pytest\n\nfrom dvc.utils.fs import copyfile, makedirs\n\n\n@pytest.mark.skipif(os.name == \"nt\", reason=\"Not supported for Windows.\")\ndef test_makedirs_permissions(tmp_dir):\n    dir_mode = 0o755\n    intermediate_dir = \"\u0442\u0435\u0441\u0442\u043e\u0432\u0430\u044f-\u0434\u0438\u0440\u0435\u043a\u0442\u043e\u0440\u0438\u044f\"\n    test_dir = os.path.join(intermediate_dir, \"data\")\n\n    assert not os.path.exists(intermediate_dir)\n\n    makedirs(test_dir, mode=dir_mode)\n\n    assert stat.S_IMODE(os.stat(test_dir).st_mode) == dir_mode\n    assert stat.S_IMODE(os.stat(intermediate_dir).st_mode) == dir_mode\n\n\ndef test_copyfile(tmp_dir):\n    src = \"file1\"\n    dest = \"file2\"\n    dest_dir = \"testdir\"\n\n    tmp_dir.gen(src, \"file1contents\")\n\n    os.mkdir(dest_dir)\n\n    copyfile(src, dest)\n    assert (tmp_dir / dest).read_text() == \"file1contents\"\n\n    copyfile(src, dest_dir)\n    assert (tmp_dir / dest_dir / src).read_text() == \"file1contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_logging_TestGC._test_gc.for_c_in_self_good_cache_.self_assertTrue_os_path_e": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_logging_TestGC._test_gc.for_c_in_self_good_cache_.self_assertTrue_os_path_e", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 50, "span_ids": ["TestGC.test_cli", "imports", "TestGC", "TestGC.setUp", "TestGC.test_api", "TestGC._test_gc"], "tokens": 317}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport shutil\n\nimport configobj\nimport pytest\nfrom git import Repo\n\nfrom dvc.cache.local import LocalCache\nfrom dvc.exceptions import CollectCacheError\nfrom dvc.main import main\nfrom dvc.repo import Repo as DvcRepo\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils.fs import remove\nfrom tests.basic_env import TestDir, TestDvcGit\n\n\nclass TestGC(TestDvcGit):\n    def setUp(self):\n        super().setUp()\n\n        self.dvc.add(self.FOO)\n        self.dvc.add(self.DATA_DIR)\n        self.good_cache = [\n            self.dvc.cache.local.tree.hash_to_path_info(md5)\n            for md5 in self.dvc.cache.local.all()\n        ]\n\n        self.bad_cache = []\n        for i in [\"123\", \"234\", \"345\"]:\n            path = os.path.join(self.dvc.cache.local.cache_dir, i[0:2], i[2:])\n            self.create(path, i)\n            self.bad_cache.append(path)\n\n    def test_api(self):\n        self.dvc.gc(workspace=True)\n        self._test_gc()\n\n    def test_cli(self):\n        ret = main([\"gc\", \"-wf\"])\n        self.assertEqual(ret, 0)\n        self._test_gc()\n\n    def _test_gc(self):\n        self.assertTrue(os.path.isdir(self.dvc.cache.local.cache_dir))\n        for c in self.bad_cache:\n            self.assertFalse(os.path.exists(c))\n\n        for c in self.good_cache:\n            self.assertTrue(os.path.exists(c))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_TestGCMultipleDvcRepos.test_TestGCMultipleDvcRepos.test.self__check_cache_2_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_TestGCMultipleDvcRepos.test_TestGCMultipleDvcRepos.test.self__check_cache_2_", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 136, "end_line": 180, "span_ids": ["TestGCMultipleDvcRepos.test"], "tokens": 325}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGCMultipleDvcRepos(TestDvcGit):\n\n    def test(self):\n\n        # ADD FILE ONLY IN MAIN PROJECT\n        fname = \"only_in_first\"\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"only in main repo\")\n\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n\n        # ADD FILE IN MAIN PROJECT THAT IS ALSO IN SECOND PROJECT\n        fname = \"in_both\"\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"in both repos\")\n\n        stages = self.dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n\n        cwd = os.getcwd()\n        os.chdir(self.additional_path)\n        # ADD FILE ONLY IN SECOND PROJECT\n        fname = \"only_in_second\"\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"only in additional repo\")\n\n        stages = self.additional_dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n\n        # ADD FILE IN SECOND PROJECT THAT IS ALSO IN MAIN PROJECT\n        fname = \"in_both\"\n        with open(fname, \"w+\") as fobj:\n            fobj.write(\"in both repos\")\n\n        stages = self.additional_dvc.add(fname)\n        self.assertEqual(len(stages), 1)\n\n        os.chdir(cwd)\n\n        self._check_cache(3)\n\n        self.dvc.gc(repos=[self.additional_path], workspace=True)\n        self._check_cache(3)\n\n        self.dvc.gc(workspace=True)\n        self._check_cache(2)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_all_commits_test_all_commits.assert__count_files_dvc_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_all_commits_test_all_commits.assert__count_files_dvc_c", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 182, "end_line": 192, "span_ids": ["test_all_commits"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_all_commits(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"testfile\", \"uncommitted\")\n    tmp_dir.dvc_gen(\"testfile\", \"committed\", commit=\"committed\")\n    tmp_dir.dvc_gen(\"testfile\", \"modified\", commit=\"modified\")\n    tmp_dir.dvc_gen(\"testfile\", \"workspace\")\n\n    n = _count_files(dvc.cache.local.cache_dir)\n    dvc.gc(all_commits=True)\n\n    # Only one uncommitted file should go away\n    assert _count_files(dvc.cache.local.cache_dir) == n - 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_cache_type_is_properly_overridden_test_cache_type_is_properly_overridden.assert_tmp_dir_file_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_cache_type_is_properly_overridden_test_cache_type_is_properly_overridden.assert_tmp_dir_file_i", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 64, "end_line": 78, "span_ids": ["test_cache_type_is_properly_overridden"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cache_type_is_properly_overridden(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        with erepo_dir.dvc.config.edit() as conf:\n            conf[\"cache\"][\"type\"] = \"symlink\"\n        erepo_dir.dvc.cache = Cache(erepo_dir.dvc)\n        erepo_dir.scm_add(\n            [erepo_dir.dvc.config.files[\"repo\"]], \"set cache type to symlinks\"\n        )\n        erepo_dir.dvc_gen(\"file\", \"contents\", \"create file\")\n    assert System.is_symlink(erepo_dir / \"file\")\n\n    Repo.get(os.fspath(erepo_dir), \"file\", \"file_imported\")\n\n    assert not System.is_symlink(\"file_imported\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py__https_github_com_iter_test_get_full_dvc_path.assert_tmp_dir_ext_da": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py__https_github_com_iter_test_get_full_dvc_path.assert_tmp_dir_ext_da", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 101, "end_line": 114, "span_ids": ["test_get_full_dvc_path", "test_get_a_dvc_file"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# https://github.com/iterative/dvc/pull/2837#discussion_r352123053\ndef test_get_full_dvc_path(tmp_dir, erepo_dir, tmp_path_factory):\n    path = tmp_path_factory.mktemp(\"ext\")\n    external_data = path / \"ext_data\"\n    external_data.write_text(\"ext_data\")\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc.add(os.fspath(external_data), external=True)\n        erepo_dir.scm_add(\"ext_data.dvc\", commit=\"add external data\")\n\n    Repo.get(\n        os.fspath(erepo_dir), os.fspath(external_data), \"ext_data_imported\"\n    )\n    assert (tmp_dir / \"ext_data_imported\").read_text() == \"ext_data\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_non_cached_output_test_non_cached_output.assert_tmp_dir_dst_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_non_cached_output_test_non_cached_output.assert_tmp_dir_dst_re", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 117, "end_line": 133, "span_ids": ["test_non_cached_output"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_non_cached_output(tmp_dir, erepo_dir):\n    src = \"non_cached_file\"\n    dst = src + \"_imported\"\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc.run(\n            outs_no_cache=[src],\n            cmd=\"echo hello > non_cached_file\",\n            single_stage=True,\n        )\n        erepo_dir.scm_add([src, src + \".dvc\"], commit=\"add non-cached output\")\n\n    Repo.get(os.fspath(erepo_dir), src, dst)\n\n    assert (tmp_dir / dst).is_file()\n    # NOTE: using strip() to account for `echo` differences on win and *nix\n    assert (tmp_dir / dst).read_text().strip() == \"hello\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_file_from_dir_test_get_file_from_dir.assert_tmp_dir_X_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_file_from_dir_test_get_file_from_dir.assert_tmp_dir_X_re", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 175, "end_line": 201, "span_ids": ["test_get_file_from_dir"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_file_from_dir(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\n            {\n                \"dir\": {\n                    \"1\": \"1\",\n                    \"2\": \"2\",\n                    \"subdir\": {\"foo\": \"foo\", \"bar\": \"bar\"},\n                }\n            },\n            commit=\"create dir\",\n        )\n\n    Repo.get(os.fspath(erepo_dir), os.path.join(\"dir\", \"1\"))\n    assert (tmp_dir / \"1\").read_text() == \"1\"\n\n    Repo.get(os.fspath(erepo_dir), os.path.join(\"dir\", \"2\"), out=\"file\")\n    assert (tmp_dir / \"file\").read_text() == \"2\"\n\n    Repo.get(os.fspath(erepo_dir), os.path.join(\"dir\", \"subdir\"))\n    assert (tmp_dir / \"subdir\" / \"foo\").read_text() == \"foo\"\n    assert (tmp_dir / \"subdir\" / \"bar\").read_text() == \"bar\"\n\n    Repo.get(\n        os.fspath(erepo_dir), os.path.join(\"dir\", \"subdir\", \"foo\"), out=\"X\"\n    )\n    assert (tmp_dir / \"X\").read_text() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get_url.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get_url.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/func/test_get_url.py", "file_name": "test_get_url.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 39, "span_ids": ["test_get_url_to_dir", "test_get_url_nonexistent", "imports", "test_get_dir", "test_get_file"], "tokens": 295}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.dependency.base import DependencyDoesNotExistError\nfrom dvc.repo import Repo\n\n\ndef test_get_file(tmp_dir):\n    tmp_dir.gen({\"foo\": \"foo contents\"})\n\n    Repo.get_url(\"foo\", \"foo_imported\")\n\n    assert (tmp_dir / \"foo_imported\").is_file()\n    assert (tmp_dir / \"foo_imported\").read_text() == \"foo contents\"\n\n\ndef test_get_dir(tmp_dir):\n    tmp_dir.gen({\"foo\": {\"foo\": \"foo contents\"}})\n\n    Repo.get_url(\"foo\", \"foo_imported\")\n\n    assert (tmp_dir / \"foo_imported\").is_dir()\n    assert (tmp_dir / \"foo_imported\" / \"foo\").is_file()\n    assert (tmp_dir / \"foo_imported\" / \"foo\").read_text() == \"foo contents\"\n\n\n@pytest.mark.parametrize(\"dname\", [\".\", \"dir\", \"dir/subdir\"])\ndef test_get_url_to_dir(tmp_dir, dname):\n    tmp_dir.gen({\"foo\": \"foo contents\", \"dir\": {\"subdir\": {}}})\n\n    Repo.get_url(\"foo\", dname)\n\n    assert (tmp_dir / dname).is_dir()\n    assert (tmp_dir / dname / \"foo\").read_text() == \"foo contents\"\n\n\ndef test_get_url_nonexistent(tmp_dir):\n    with pytest.raises(DependencyDoesNotExistError):\n        Repo.get_url(\"nonexistent\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_rename_ignored_file_test_rename_ignored_file.assert_new_mtime_mtime": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_rename_ignored_file_test_rename_ignored_file.assert_new_mtime_mtime", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 40, "end_line": 51, "span_ids": ["test_rename_ignored_file"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_rename_ignored_file(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"ignored\": \"...\", \"other\": \"text\"}})\n\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"ignored*\")\n    dvc.tree._reset()\n\n    mtime, size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    shutil.move(\"dir/ignored\", \"dir/ignored_new\")\n    new_mtime, new_size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    assert new_mtime == mtime and new_size == size", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_on_branch_test_ignore_on_branch.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_on_branch_test_ignore_on_branch.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 125, "end_line": 143, "span_ids": ["test_ignore_on_branch"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ignore_on_branch(tmp_dir, scm, dvc):\n    tmp_dir.scm_gen({\"foo\": \"foo\", \"bar\": \"bar\"}, commit=\"add files\")\n\n    with tmp_dir.branch(\"branch\", new=True):\n        tmp_dir.scm_gen(DvcIgnore.DVCIGNORE_FILE, \"foo\", commit=\"add ignore\")\n\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path)) == {\n        path / \"foo\",\n        path / \"bar\",\n        path / \".dvcignore\",\n    }\n\n    dvc.tree = scm.get_tree(\"branch\", use_dvcignore=True)\n    assert set(dvc.tree.walk_files(path)) == {\n        os.fspath(path / DvcIgnore.DVCIGNORE_FILE),\n        os.fspath(path / \"bar\"),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_git_file_test_import_git_file.assert_stage_deps_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_git_file_test_import_git_file.assert_stage_deps_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 49, "span_ids": ["test_import_git_file"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"src_is_dvc\", [True, False])\ndef test_import_git_file(tmp_dir, scm, dvc, git_dir, src_is_dvc):\n    if src_is_dvc:\n        git_dir.init(dvc=True)\n\n    git_dir.scm_gen(\"src\", \"hello\", commit=\"add a git file\")\n\n    stage = tmp_dir.dvc.imp(os.fspath(git_dir), \"src\", \"dst\")\n\n    assert (tmp_dir / \"dst\").read_text() == \"hello\"\n    assert tmp_dir.scm.is_ignored(os.fspath(tmp_dir / \"dst\"))\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(git_dir),\n        \"rev_lock\": git_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_git_dir_test_import_git_dir.assert_stage_deps_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_git_dir_test_import_git_dir.assert_stage_deps_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 70, "end_line": 84, "span_ids": ["test_import_git_dir"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"src_is_dvc\", [True, False])\ndef test_import_git_dir(tmp_dir, scm, dvc, git_dir, src_is_dvc):\n    if src_is_dvc:\n        git_dir.init(dvc=True)\n\n    git_dir.scm_gen({\"src\": {\"file.txt\": \"hello\"}}, commit=\"add a dir\")\n\n    stage = dvc.imp(os.fspath(git_dir), \"src\", \"dst\")\n\n    assert (tmp_dir / \"dst\").read_text() == {\"file.txt\": \"hello\"}\n    assert tmp_dir.scm.is_ignored(os.fspath(tmp_dir / \"dst\"))\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(git_dir),\n        \"rev_lock\": git_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_dir_test_import_dir.assert_stage_deps_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_dir_test_import_dir.assert_stage_deps_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 87, "end_line": 98, "span_ids": ["test_import_dir"], "tokens": 140}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_dir(tmp_dir, scm, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({\"dir\": {\"foo\": \"foo content\"}}, commit=\"create dir\")\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"dir\", \"dir_imported\")\n\n    assert (tmp_dir / \"dir_imported\").read_text() == {\"foo\": \"foo content\"}\n    assert scm.is_ignored(\"dir_imported\")\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_file_from_dir_test_import_file_from_dir.assert_tmp_dir_X_dvc_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_file_from_dir_test_import_file_from_dir.assert_tmp_dir_X_dvc_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 101, "end_line": 136, "span_ids": ["test_import_file_from_dir"], "tokens": 364}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_file_from_dir(tmp_dir, scm, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\n            {\n                \"dir\": {\n                    \"1\": \"1\",\n                    \"2\": \"2\",\n                    \"subdir\": {\"foo\": \"foo\", \"bar\": \"bar\"},\n                }\n            },\n            commit=\"create dir\",\n        )\n\n    stage = dvc.imp(os.fspath(erepo_dir), os.path.join(\"dir\", \"1\"))\n\n    assert (tmp_dir / \"1\").read_text() == \"1\"\n    assert scm.is_ignored(\"1\")\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }\n\n    dvc.imp(os.fspath(erepo_dir), os.path.join(\"dir\", \"2\"), out=\"file\")\n    assert (tmp_dir / \"file\").read_text() == \"2\"\n    assert (tmp_dir / \"file.dvc\").exists()\n\n    dvc.imp(os.fspath(erepo_dir), os.path.join(\"dir\", \"subdir\"))\n    assert (tmp_dir / \"subdir\" / \"foo\").read_text() == \"foo\"\n    assert (tmp_dir / \"subdir\" / \"bar\").read_text() == \"bar\"\n    assert (tmp_dir / \"subdir.dvc\").exists()\n\n    dvc.imp(\n        os.fspath(erepo_dir), os.path.join(\"dir\", \"subdir\", \"foo\"), out=\"X\"\n    )\n    assert (tmp_dir / \"X\").read_text() == \"foo\"\n    assert (tmp_dir / \"X.dvc\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_non_cached_test_import_non_cached.assert_stage_deps_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_non_cached_test_import_non_cached.assert_stage_deps_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 161, "end_line": 182, "span_ids": ["test_import_non_cached"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_non_cached(erepo_dir, tmp_dir, dvc, scm):\n    src = \"non_cached_output\"\n    dst = src + \"_imported\"\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc.run(\n            cmd=f\"echo hello > {src}\", outs_no_cache=[src], single_stage=True,\n        )\n\n    erepo_dir.scm_add(\n        [os.fspath(erepo_dir / src)], commit=\"add a non-cached out\"\n    )\n\n    stage = tmp_dir.dvc.imp(os.fspath(erepo_dir), src, dst)\n\n    assert (tmp_dir / dst).is_file()\n    assert filecmp.cmp(erepo_dir / src, tmp_dir / dst, shallow=False)\n    assert tmp_dir.scm.is_ignored(dst)\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_rev_test_import_rev.assert_stage_deps_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_rev_test_import_rev.assert_stage_deps_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 185, "end_line": 199, "span_ids": ["test_import_rev"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_rev(tmp_dir, scm, dvc, erepo_dir):\n    rev = None\n    with erepo_dir.chdir(), erepo_dir.branch(\"branch\", new=True):\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", commit=\"create foo on branch\")\n        rev = erepo_dir.scm.get_rev()\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\", rev=\"branch\")\n\n    assert (tmp_dir / \"foo_imported\").read_text() == \"foo content\"\n    assert scm.is_ignored(\"foo_imported\")\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev\": \"branch\",\n        \"rev_lock\": rev,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_imported_stage_test_pull_imported_stage.assert_os_path_isfile_dst": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_imported_stage_test_pull_imported_stage.assert_os_path_isfile_dst", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 179, "end_line": 192, "span_ids": ["test_pull_imported_stage"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_imported_stage(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", commit=\"create foo\")\n    dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\")\n\n    dst_stage = Dvcfile(dvc, \"foo_imported.dvc\").stage\n    dst_cache = dst_stage.outs[0].cache_path\n\n    remove(\"foo_imported\")\n    remove(dst_cache)\n    dvc.pull([\"foo_imported.dvc\"])\n\n    assert os.path.isfile(\"foo_imported\")\n    assert os.path.isfile(dst_cache)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_download_error_pulling_imported_stage_test_download_error_pulling_imported_stage.with_patch_.dvc_pull_foo_imported_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_download_error_pulling_imported_stage_test_download_error_pulling_imported_stage.with_patch_.dvc_pull_foo_imported_d", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 251, "end_line": 265, "span_ids": ["test_download_error_pulling_imported_stage"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_download_error_pulling_imported_stage(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", commit=\"create foo\")\n    dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\")\n\n    dst_stage = Dvcfile(dvc, \"foo_imported.dvc\").stage\n    dst_cache = dst_stage.outs[0].cache_path\n\n    remove(\"foo_imported\")\n    remove(dst_cache)\n\n    with patch(\n        \"dvc.tree.local.LocalTree._download\", side_effect=Exception\n    ), pytest.raises(DownloadError):\n        dvc.pull([\"foo_imported.dvc\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_to_dir_test_import_to_dir.assert_tmp_dir_dst_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_to_dir_test_import_to_dir.assert_tmp_dir_dst_re", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 246, "end_line": 259, "span_ids": ["test_import_to_dir"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"dname\", [\".\", \"dir\", \"dir/subdir\"])\ndef test_import_to_dir(dname, tmp_dir, dvc, erepo_dir):\n    makedirs(dname, exist_ok=True)\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", commit=\"create foo\")\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"foo\", dname)\n\n    dst = os.path.join(dname, \"foo\")\n\n    assert stage.outs[0].fspath == os.path.abspath(dst)\n    assert os.path.isdir(dname)\n    assert (tmp_dir / dst).read_text() == \"foo content\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_non_workspace_test_pull_non_workspace.assert_os_path_exists_sta": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_non_workspace_test_pull_non_workspace.assert_os_path_exists_sta", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 262, "end_line": 278, "span_ids": ["test_pull_non_workspace"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_non_workspace(tmp_dir, scm, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"master content\", commit=\"create foo\")\n\n        with erepo_dir.branch(\"branch\", new=True):\n            erepo_dir.dvc_gen(\"foo\", \"branch content\", commit=\"modify foo\")\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\", rev=\"branch\")\n    tmp_dir.scm_add([stage.relpath], commit=\"imported branch\")\n    scm.tag(\"ref-to-branch\")\n\n    # Overwrite via import\n    dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\", rev=\"master\")\n\n    remove(stage.outs[0].cache_path)\n    dvc.fetch(all_tags=True)\n    assert os.path.exists(stage.outs[0].cache_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_non_existing_test_pull_no_rev_lock.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_non_existing_test_pull_no_rev_lock.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 281, "end_line": 306, "span_ids": ["test_import_non_existing", "test_pull_no_rev_lock"], "tokens": 263}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_non_existing(erepo_dir, tmp_dir, dvc):\n    with pytest.raises(PathMissingError):\n        tmp_dir.dvc.imp(os.fspath(erepo_dir), \"invalid_output\")\n\n    # https://github.com/iterative/dvc/pull/2837#discussion_r352123053\n    with pytest.raises(PathMissingError):\n        tmp_dir.dvc.imp(os.fspath(erepo_dir), \"/root/\", \"root\")\n\n\ndef test_pull_no_rev_lock(erepo_dir, tmp_dir, dvc):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"contents\", commit=\"create foo\")\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\")\n    assert \"rev\" not in stage.deps[0].def_repo\n    stage.deps[0].def_repo.pop(\"rev_lock\")\n\n    Dvcfile(dvc, stage.path).dump(stage)\n\n    remove(stage.outs[0].cache_path)\n    (tmp_dir / \"foo_imported\").unlink()\n\n    dvc.pull([stage.path])\n\n    assert (tmp_dir / \"foo_imported\").is_file()\n    assert (tmp_dir / \"foo_imported\").read_text() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_os_test_should_remove_outs_before_import.assert_remove_outs_call_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_os_test_should_remove_outs_before_import.assert_remove_outs_call_c", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 52, "span_ids": ["TestDefaultOutput.test", "TestCmdImport.test", "imports", "TestDefaultOutput", "TestCmdImport", "TestCmdImport.test_unsupported", "test_should_remove_outs_before_import"], "tokens": 365}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport textwrap\nfrom uuid import uuid4\n\nimport pytest\n\nfrom dvc.cache import Cache\nfrom dvc.dependency.base import DependencyDoesNotExistError\nfrom dvc.main import main\nfrom dvc.stage import Stage\nfrom dvc.utils.fs import makedirs\nfrom tests.basic_env import TestDvc\n\n\nclass TestCmdImport(TestDvc):\n    def test(self):\n        ret = main([\"import-url\", self.FOO, \"import\"])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.exists(\"import.dvc\"))\n\n        ret = main([\"import-url\", \"non-existing-file\", \"import\"])\n        self.assertNotEqual(ret, 0)\n\n    def test_unsupported(self):\n        ret = main([\"import-url\", \"unsupported://path\", \"import_unsupported\"])\n        self.assertNotEqual(ret, 0)\n\n\nclass TestDefaultOutput(TestDvc):\n    def test(self):\n        tmpdir = self.mkdtemp()\n        filename = str(uuid4())\n        tmpfile = os.path.join(tmpdir, filename)\n\n        with open(tmpfile, \"w\") as fd:\n            fd.write(\"content\")\n\n        ret = main([\"import-url\", tmpfile])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.exists(filename))\n        with open(filename) as fd:\n            self.assertEqual(fd.read(), \"content\")\n\n\ndef test_should_remove_outs_before_import(tmp_dir, dvc, mocker, erepo_dir):\n    erepo_dir.gen({\"foo\": \"foo\"})\n\n    remove_outs_call_counter = mocker.spy(Stage, \"remove_outs\")\n    ret = main([\"import-url\", os.fspath(erepo_dir / \"foo\")])\n\n    assert ret == 0\n    assert remove_outs_call_counter.mock.call_count == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_to_dir_test_import_url_to_dir.assert_dst_read_text_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_to_dir_test_import_url_to_dir.assert_dst_read_text_", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 81, "end_line": 94, "span_ids": ["test_import_url_to_dir"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"dname\", [\".\", \"dir\", \"dir/subdir\"])\ndef test_import_url_to_dir(dname, tmp_dir, dvc):\n    tmp_dir.gen({\"data_dir\": {\"file\": \"file content\"}})\n    src = os.path.join(\"data_dir\", \"file\")\n\n    makedirs(dname, exist_ok=True)\n\n    stage = dvc.imp_url(src, dname)\n\n    dst = tmp_dir / dname / \"file\"\n\n    assert stage.outs[0].path_info == dst\n    assert os.path.isdir(dname)\n    assert dst.read_text() == \"file content\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_init.py_logging_test_allow_init_dvc_subdir.assert_repo_scm_root_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_init.py_logging_test_allow_init_dvc_subdir.assert_repo_scm_root_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_init.py", "file_name": "test_init.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 86, "span_ids": ["TestInit", "TestInitNoSCMFail.test_api", "TestDoubleInit", "TestInit._test_init", "imports", "TestInitNoSCMFail", "TestInitNoSCMFail.test_cli", "TestInit.test_api", "test_init_no_scm_api", "TestDoubleInit.test", "test_init_quiet_should_not_display_welcome_screen", "test_allow_init_dvc_subdir", "test_init_no_scm_cli", "TestInit.test_cli"], "tokens": 540}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nfrom dvc.config import Config\nfrom dvc.exceptions import InitError\nfrom dvc.main import main\nfrom dvc.repo import Repo as DvcRepo\nfrom tests.basic_env import TestDir, TestGit\n\n\nclass TestInit(TestGit):\n    def _test_init(self):\n        self.assertTrue(os.path.exists(DvcRepo.DVC_DIR))\n        self.assertTrue(os.path.isdir(DvcRepo.DVC_DIR))\n\n    def test_api(self):\n        DvcRepo.init()\n\n        self._test_init()\n\n    def test_cli(self):\n        ret = main([\"init\"])\n        self.assertEqual(ret, 0)\n\n        self._test_init()\n\n\nclass TestDoubleInit(TestInit):\n    def test(self):\n        ret = main([\"init\"])\n        self.assertEqual(ret, 0)\n        self._test_init()\n\n        ret = main([\"init\"])\n        self.assertNotEqual(ret, 0)\n        self._test_init()\n\n        ret = main([\"init\", \"--force\"])\n        self.assertEqual(ret, 0)\n        self._test_init()\n\n\nclass TestInitNoSCMFail(TestDir):\n    def test_api(self):\n        with self.assertRaises(InitError):\n            DvcRepo.init()\n\n    def test_cli(self):\n        ret = main([\"init\"])\n        self.assertNotEqual(ret, 0)\n\n\ndef test_init_no_scm_api(tmp_dir):\n    repo = DvcRepo.init(no_scm=True)\n\n    assert (tmp_dir / DvcRepo.DVC_DIR).is_dir()\n    assert repo.config[\"core\"][\"no_scm\"]\n\n\ndef test_init_no_scm_cli(tmp_dir):\n    ret = main([\"init\", \"--no-scm\"])\n    assert ret == 0\n\n    dvc_path = tmp_dir / DvcRepo.DVC_DIR\n    assert dvc_path.is_dir()\n    assert Config(os.fspath(dvc_path))[\"core\"][\"no_scm\"]\n\n\ndef test_init_quiet_should_not_display_welcome_screen(tmp_dir, scm, caplog):\n    with caplog.at_level(logging.INFO, logger=\"dvc\"):\n        ret = main([\"init\", \"--quiet\"])\n\n        assert 0 == ret\n        assert \"\" == caplog.text\n\n\ndef test_allow_init_dvc_subdir(tmp_dir, scm, monkeypatch):\n    tmp_dir.gen({\"subdir\": {}})\n\n    with monkeypatch.context() as m:\n        m.chdir(\"subdir\")\n        assert main([\"init\", \"--subdir\"]) == 0\n\n    repo = DvcRepo(\"subdir\")\n    assert repo.root_dir == os.fspath(tmp_dir / \"subdir\")\n    assert repo.scm.root_dir == os.fspath(tmp_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_os_TestInstall.test_post_checkout.assert_os_path_isfile_fi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_os_TestInstall.test_post_checkout.assert_os_path_isfile_fi", "embedding": null, "metadata": {"file_path": "tests/func/test_install.py", "file_name": "test_install.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 55, "span_ids": ["imports", "TestInstall.test_post_checkout", "TestInstall", "TestInstall.test_pre_commit_hook", "TestInstall.test_fail_if_hook_exists", "TestInstall.test_create_hooks", "TestInstall._hook"], "tokens": 385}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport pathlib\nimport sys\n\nimport pytest\nfrom git import GitCommandError\n\nfrom dvc.exceptions import GitHookAlreadyExistsError\nfrom dvc.utils import file_md5\n\n\n@pytest.mark.skipif(\n    sys.platform == \"win32\", reason=\"Git hooks aren't supported on Windows\"\n)\nclass TestInstall:\n    def _hook(self, name):\n        return pathlib.Path(\".git\") / \"hooks\" / name\n\n    def test_create_hooks(self, scm, dvc):\n        scm.install()\n\n        hooks_with_commands = [\n            (\"post-checkout\", \"exec dvc git-hook post-checkout\"),\n            (\"pre-commit\", \"exec dvc git-hook pre-commit\"),\n            (\"pre-push\", \"exec dvc git-hook pre-push\"),\n        ]\n\n        for fname, command in hooks_with_commands:\n            hook_path = self._hook(fname)\n            assert hook_path.is_file()\n            assert command in hook_path.read_text()\n\n    def test_fail_if_hook_exists(self, scm):\n        self._hook(\"post-checkout\").write_text(\"hook content\")\n\n        with pytest.raises(GitHookAlreadyExistsError):\n            scm.install()\n\n    def test_pre_commit_hook(self, tmp_dir, scm, dvc, caplog):\n        tmp_dir.dvc_gen(\"file\", \"file content\", commit=\"create foo\")\n        tmp_dir.gen(\"file\", \"file modified\")\n        scm.install()\n\n        # scm.commit bypasses hooks\n        with pytest.raises(GitCommandError, match=r\"modified:\\s*file\"):\n            scm.gitpython.repo.git.commit(m=\"file modified\")\n\n    def test_post_checkout(self, tmp_dir, scm, dvc):\n        tmp_dir.dvc_gen({\"file\": \"file content\"}, commit=\"add\")\n        os.unlink(\"file\")\n        scm.install()\n\n        scm.checkout(\"new_branch\", create_new=True)\n\n        assert os.path.isfile(\"file\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_os_match_files.assert_left_right": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_os_match_files.assert_left_right", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 30, "span_ids": ["imports", "match_files"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport shutil\nimport textwrap\nfrom operator import itemgetter\n\nimport pytest\n\nfrom dvc.exceptions import PathMissingError\nfrom dvc.repo import Repo\nfrom dvc.scm.base import CloneError\n\nFS_STRUCTURE = {\n    \"README.md\": \"content\",\n    \"model/script.py\": \"content\",\n    \"model/train.py\": \"content\",\n    \".gitignore\": \"content\",\n}\n\nDVC_STRUCTURE = {\n    \"structure.xml\": \"content\",\n    \"data/subcontent/data.xml\": \"content\",\n    \"data/subcontent/statistics/data.csv\": \"content\",\n    \"model/people.csv\": \"content\",\n}\n\n\ndef match_files(files, expected_files):\n    left = {(f[\"path\"], f[\"isout\"]) for f in files}\n    right = {(os.path.join(*args), isout) for (args, isout) in expected_files}\n    assert left == right", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_create_dvc_pipeline_create_dvc_pipeline.shutil_rmtree_out_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_create_dvc_pipeline_create_dvc_pipeline.shutil_rmtree_out_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 32, "end_line": 53, "span_ids": ["create_dvc_pipeline"], "tokens": 183}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def create_dvc_pipeline(tmp_dir, dvc):\n    script = textwrap.dedent(\n        \"\"\"\\\n        import os, sys\n        f = sys.argv[1]\n        os.makedirs(os.path.dirname(f))\n        open(f, \"w+\").close()\n    \"\"\"\n    )\n    tmp_dir.scm_gen({\"script.py\": script}, commit=\"init\")\n    tmp_dir.dvc_gen({\"dep\": \"content\"}, commit=\"init dvc\")\n    dvc.run(\n        **{\n            \"cmd\": \"python script.py {}\".format(os.path.join(\"out\", \"file\")),\n            \"outs\": [os.path.join(\"out\", \"file\")],\n            \"deps\": [\"dep\"],\n            \"fname\": \"out.dvc\",\n            \"single_stage\": True,\n        }\n    )\n    tmp_dir.scm_add([\"out.dvc\"], commit=\"run\")\n    shutil.rmtree(\"out\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_test_ls_repo.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_test_ls_repo.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 57, "end_line": 73, "span_ids": ["test_ls_repo"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    files = Repo.ls(os.fspath(tmp_dir))\n    match_files(\n        files,\n        (\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n            ((\"README.md\",), False),\n            ((\"structure.xml.dvc\",), False),\n            ((\"model\",), False),\n            ((\"data\",), False),\n            ((\"structure.xml\",), True),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_color_test_ls_repo_with_color.assert_caplog_records_1_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_color_test_ls_repo_with_color.assert_caplog_records_1_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 76, "end_line": 103, "span_ids": ["test_ls_repo_with_color"], "tokens": 279}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_color(tmp_dir, dvc, scm, mocker, monkeypatch, caplog):\n    import logging\n\n    from dvc.cli import parse_args\n\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    monkeypatch.setenv(\"LS_COLORS\", \"rs=0:di=01;34:*.xml=01;31:*.dvc=01;33:\")\n    cli_args = parse_args([\"list\", os.fspath(tmp_dir)])\n    cmd = cli_args.func(cli_args)\n\n    caplog.clear()\n    mocker.patch(\"sys.stdout.isatty\", return_value=True)\n    with caplog.at_level(logging.INFO, logger=\"dvc.command.ls\"):\n        assert cmd.run() == 0\n\n    assert caplog.records[-1].msg == \"\\n\".join(\n        [\n            \".dvcignore\",\n            \".gitignore\",\n            \"README.md\",\n            \"\\x1b[01;34mdata\\x1b[0m\",\n            \"\\x1b[01;34mmodel\\x1b[0m\",\n            \"\\x1b[01;31mstructure.xml\\x1b[0m\",\n            \"\\x1b[01;33mstructure.xml.dvc\\x1b[0m\",\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_recursive_test_ls_repo_recursive.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_recursive_test_ls_repo_recursive.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 106, "end_line": 131, "span_ids": ["test_ls_repo_recursive"], "tokens": 263}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_recursive(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    files = Repo.ls(os.fspath(tmp_dir), recursive=True)\n    match_files(\n        files,\n        (\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n            ((\"README.md\",), False),\n            ((\"structure.xml.dvc\",), False),\n            ((\"model\", \"script.py\"), False),\n            ((\"model\", \"train.py\"), False),\n            ((\"model\", \"people.csv.dvc\"), False),\n            ((\"data\", \"subcontent\", \"data.xml.dvc\"), False),\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv.dvc\"), False),\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv\"), True),\n            ((\"data\", \"subcontent\", \"statistics\", \".gitignore\"), False),\n            ((\"data\", \"subcontent\", \"data.xml\"), True),\n            ((\"data\", \"subcontent\", \".gitignore\"), False),\n            ((\"model\", \"people.csv\"), True),\n            ((\"model\", \".gitignore\"), False),\n            ((\"structure.xml\",), True),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_subdir_test_ls_repo_with_path_subdir.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_subdir_test_ls_repo_with_path_subdir.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 171, "end_line": 185, "span_ids": ["test_ls_repo_with_path_subdir"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_path_subdir(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    path = os.path.join(\"data\", \"subcontent\")\n    files = Repo.ls(os.fspath(tmp_dir), path)\n    match_files(\n        files,\n        (\n            ((\"data.xml\",), True),\n            ((\"data.xml.dvc\",), False),\n            ((\"statistics\",), False),\n            ((\".gitignore\",), False),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_removed_dvc_dir_recursive_test_ls_repo_with_removed_dvc_dir_recursive.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_removed_dvc_dir_recursive_test_ls_repo_with_removed_dvc_dir_recursive.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 272, "end_line": 287, "span_ids": ["test_ls_repo_with_removed_dvc_dir_recursive"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_removed_dvc_dir_recursive(tmp_dir, dvc, scm):\n    create_dvc_pipeline(tmp_dir, dvc)\n\n    files = Repo.ls(os.fspath(tmp_dir), recursive=True)\n    match_files(\n        files,\n        (\n            ((\"script.py\",), False),\n            ((\"dep.dvc\",), False),\n            ((\"out.dvc\",), False),\n            ((\"dep\",), True),\n            ((\"out\", \"file\"), True),\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_removed_dvc_dir_with_path_dir_test_ls_repo_with_removed_dvc_dir_with_path_file.match_files_files_fi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_removed_dvc_dir_with_path_dir_test_ls_repo_with_removed_dvc_dir_with_path_file.match_files_files_fi", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 283, "end_line": 296, "span_ids": ["test_ls_repo_with_removed_dvc_dir_with_path_file", "test_ls_repo_with_removed_dvc_dir_with_path_dir"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_removed_dvc_dir_with_path_dir(tmp_dir, dvc, scm):\n    create_dvc_pipeline(tmp_dir, dvc)\n\n    path = \"out\"\n    files = Repo.ls(os.fspath(tmp_dir), path)\n    match_files(files, (((\"file\",), True),))\n\n\ndef test_ls_repo_with_removed_dvc_dir_with_path_file(tmp_dir, dvc, scm):\n    create_dvc_pipeline(tmp_dir, dvc)\n\n    path = os.path.join(\"out\", \"file\")\n    files = Repo.ls(os.fspath(tmp_dir), path)\n    match_files(files, (((\"file\",), True),))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_test_ls_remote_repo.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_test_ls_remote_repo.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 306, "end_line": 324, "span_ids": ["test_ls_remote_repo"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_remote_repo(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n        erepo_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    url = f\"file://{erepo_dir}\"\n    files = Repo.ls(url)\n    match_files(\n        files,\n        (\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n            ((\"README.md\",), False),\n            ((\"structure.xml.dvc\",), False),\n            ((\"model\",), False),\n            ((\"data\",), False),\n            ((\"structure.xml\",), True),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_recursive_test_ls_remote_repo_recursive.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_recursive_test_ls_remote_repo_recursive.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 327, "end_line": 354, "span_ids": ["test_ls_remote_repo_recursive"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_remote_repo_recursive(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n        erepo_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    url = f\"file://{erepo_dir}\"\n    files = Repo.ls(url, recursive=True)\n    match_files(\n        files,\n        (\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n            ((\"README.md\",), False),\n            ((\"structure.xml.dvc\",), False),\n            ((\"model\", \"script.py\"), False),\n            ((\"model\", \"train.py\"), False),\n            ((\"model\", \"people.csv.dvc\"), False),\n            ((\"data\", \"subcontent\", \"data.xml.dvc\"), False),\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv.dvc\"), False),\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv\"), True),\n            ((\"data\", \"subcontent\", \"statistics\", \".gitignore\"), False),\n            ((\"data\", \"subcontent\", \"data.xml\"), True),\n            ((\"data\", \"subcontent\", \".gitignore\"), False),\n            ((\"model\", \"people.csv\"), True),\n            ((\"model\", \".gitignore\"), False),\n            ((\"structure.xml\",), True),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_git_only_repo_recursive_test_ls_remote_repo_with_path_dir.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_git_only_repo_recursive_test_ls_remote_repo_with_path_dir.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 348, "end_line": 382, "span_ids": ["test_ls_remote_git_only_repo_recursive", "test_ls_remote_repo_with_path_dir"], "tokens": 235}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_remote_git_only_repo_recursive(git_dir):\n    with git_dir.chdir():\n        git_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n\n    url = f\"file://{git_dir}\"\n    files = Repo.ls(url, recursive=True)\n    match_files(\n        files,\n        (\n            ((\".gitignore\",), False),\n            ((\"README.md\",), False),\n            ((\"model\", \"script.py\"), False),\n            ((\"model\", \"train.py\"), False),\n        ),\n    )\n\n\ndef test_ls_remote_repo_with_path_dir(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n        erepo_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    url = f\"file://{erepo_dir}\"\n    path = \"model\"\n    files = Repo.ls(url, path)\n    match_files(\n        files,\n        (\n            ((\"script.py\",), False),\n            ((\"train.py\",), False),\n            ((\"people.csv\",), True),\n            ((\"people.csv.dvc\",), False),\n            ((\".gitignore\",), False),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_with_rev_test_ls_remote_repo_with_rev.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_with_rev_test_ls_remote_repo_with_rev.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 394, "end_line": 410, "span_ids": ["test_ls_remote_repo_with_rev"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_remote_repo_with_rev(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n        erepo_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    rev = erepo_dir.scm.list_all_commits()[1]\n    url = f\"file://{erepo_dir}\"\n    files = Repo.ls(url, rev=rev)\n    match_files(\n        files,\n        (\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n            ((\"README.md\",), False),\n            ((\"model\",), False),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileInsideDirectory_TestMoveFileInsideDirectory.test.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_TestMoveFileInsideDirectory_TestMoveFileInsideDirectory.test.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 181, "end_line": 195, "span_ids": ["TestMoveFileInsideDirectory", "TestMoveFileInsideDirectory.test"], "tokens": 130}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMoveFileInsideDirectory(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.DATA])\n        self.assertEqual(ret, 0)\n\n        with cd(self.DATA_DIR):\n            ret = main([\"move\", os.path.basename(self.DATA), \"data.txt\"])\n            self.assertEqual(ret, 0)\n\n        self.assertFalse(os.path.exists(self.DATA))\n\n        data_fullpath = os.path.join(self.DATA_DIR, \"data.txt\")\n        dvc_fullpath = os.path.join(self.DATA_DIR, \"data.txt.dvc\")\n        self.assertTrue(os.path.exists(data_fullpath))\n        self.assertTrue(os.path.exists(dvc_fullpath))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_test_move_should_save_stage_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_move.py_test_move_should_save_stage_info_", "embedding": null, "metadata": {"file_path": "tests/func/test_move.py", "file_name": "test_move.py", "file_type": "text/x-python", "category": "test", "start_line": 198, "end_line": 216, "span_ids": ["test_should_move_to_dir_on_non_default_stage_file", "test_move_should_save_stage_info"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_move_should_save_stage_info(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"old_name\": {\"file1\": \"file1\"}})\n\n    dvc.move(\"old_name\", \"new_name\")\n\n    assert dvc.status() == {}\n\n\ndef test_should_move_to_dir_on_non_default_stage_file(tmp_dir, dvc):\n    stage_file_name = \"stage.dvc\"\n    tmp_dir.gen({\"file\": \"file_content\"})\n\n    dvc.add(\"file\", fname=stage_file_name)\n    os.mkdir(\"directory\")\n\n    dvc.move(\"file\", \"directory\")\n\n    assert os.path.exists(os.path.join(\"directory\", \"file\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_errno_TestRemote.test.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_errno_TestRemote.test.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["imports", "TestRemote.test", "TestRemote"], "tokens": 279}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport os\nimport stat\n\nimport configobj\nimport pytest\nfrom mock import patch\n\nfrom dvc.config import Config\nfrom dvc.dir_info import DirInfo\nfrom dvc.exceptions import DownloadError, RemoteCacheRequiredError, UploadError\nfrom dvc.main import main\nfrom dvc.path_info import PathInfo\nfrom dvc.tree.base import BaseTree\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils.fs import remove\nfrom tests.basic_env import TestDvc\nfrom tests.remotes import Local\n\n\nclass TestRemote(TestDvc):\n    def test(self):\n        remotes = [\"a\", \"b\", \"c\"]\n\n        self.assertEqual(main([\"remote\", \"list\"]), 0)\n        self.assertNotEqual(main([\"remote\", \"remove\", remotes[0]]), 0)\n\n        for r in remotes:\n            self.assertEqual(\n                main([\"remote\", \"add\", \"--default\", r, \"s3://bucket/name\"]), 0\n            )\n\n        self.assertEqual(main([\"remote\", \"list\"]), 0)\n\n        self.assertEqual(\n            main([\"remote\", \"modify\", remotes[0], \"checksum_jobs\", \"1\"]), 0\n        )\n        self.assertEqual(main([\"remote\", \"remove\", remotes[0]]), 0)\n\n        self.assertEqual(main([\"remote\", \"list\"]), 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remove_default_test_remove_default.assert_local_config_get_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remove_default_test_remove_default.assert_local_config_get_", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 69, "end_line": 87, "span_ids": ["test_remove_default"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_default(tmp_dir, dvc):\n    remote = \"mys3\"\n    assert (\n        main([\"remote\", \"add\", \"--default\", remote, \"s3://bucket/name\"]) == 0\n    )\n    assert main([\"remote\", \"modify\", remote, \"profile\", \"default\"]) == 0\n    assert main([\"config\", \"--local\", \"core.remote\", remote]) == 0\n\n    config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    local_config = configobj.ConfigObj(dvc.config.files[\"local\"])\n    assert config[\"core\"][\"remote\"] == remote\n    assert local_config[\"core\"][\"remote\"] == remote\n\n    assert main([\"remote\", \"remove\", remote]) == 0\n\n    config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    local_config = configobj.ConfigObj(dvc.config.files[\"local\"])\n    assert config.get(\"core\", {}).get(\"remote\") is None\n    assert local_config.get(\"core\", {}).get(\"remote\") is None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_show_default_TestRemoteShouldHandleUppercaseRemoteName.test.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_show_default_TestRemoteShouldHandleUppercaseRemoteName.test.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 125, "end_line": 145, "span_ids": ["TestRemoteShouldHandleUppercaseRemoteName.test", "TestRemoteShouldHandleUppercaseRemoteName", "test_show_default"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_default(dvc, capsys):\n    assert main([\"remote\", \"add\", \"foo\", \"s3://bucket/name\"]) == 0\n    assert main([\"remote\", \"default\", \"foo\"]) == 0\n    assert main([\"remote\", \"default\"]) == 0\n    out, _ = capsys.readouterr()\n    assert out == \"foo\\n\"\n\n\nclass TestRemoteShouldHandleUppercaseRemoteName(TestDvc):\n    upper_case_remote_name = \"UPPERCASEREMOTE\"\n\n    def test(self):\n        remote_url = Local.get_storagepath()\n        ret = main([\"remote\", \"add\", self.upper_case_remote_name, remote_url])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"add\", self.FOO])\n        self.assertEqual(ret, 0)\n\n        ret = main([\"push\", \"-r\", self.upper_case_remote_name])\n        self.assertEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_partial_push_n_pull_test_partial_push_n_pull.None_1.assert_download_error_inf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_partial_push_n_pull_test_partial_push_n_pull.None_1.assert_download_error_inf", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 175, "end_line": 213, "span_ids": ["test_partial_push_n_pull"], "tokens": 369}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_partial_push_n_pull(tmp_dir, dvc, tmp_path_factory, local_remote):\n    foo = tmp_dir.dvc_gen({\"foo\": \"foo content\"})[0].outs[0]\n    bar = tmp_dir.dvc_gen({\"bar\": \"bar content\"})[0].outs[0]\n    baz = tmp_dir.dvc_gen({\"baz\": {\"foo\": \"baz content\"}})[0].outs[0]\n\n    # Faulty upload version, failing on foo\n    original = LocalTree._upload\n\n    def unreliable_upload(self, from_file, to_info, name=None, **kwargs):\n        if \"foo\" in name:\n            raise Exception(\"stop foo\")\n        return original(self, from_file, to_info, name, **kwargs)\n\n    with patch.object(LocalTree, \"_upload\", unreliable_upload):\n        with pytest.raises(UploadError) as upload_error_info:\n            dvc.push()\n        assert upload_error_info.value.amount == 3\n\n        remote = dvc.cloud.get_remote(\"upstream\")\n        assert not remote.tree.exists(\n            remote.tree.hash_to_path_info(foo.hash_info.value)\n        )\n        assert remote.tree.exists(\n            remote.tree.hash_to_path_info(bar.hash_info.value)\n        )\n        assert not remote.tree.exists(\n            remote.tree.hash_to_path_info(baz.hash_info.value)\n        )\n\n    # Push everything and delete local cache\n    dvc.push()\n    remove(dvc.cache.local.cache_dir)\n\n    with patch.object(LocalTree, \"_download\", side_effect=Exception):\n        with pytest.raises(DownloadError) as download_error_info:\n            dvc.pull()\n        # error count should be len(.dir + standalone file checksums)\n        # since files inside dir are ignored if dir cache entry is missing\n        assert download_error_info.value.amount == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproWorkingDirectoryAsOutput.test_nested_TestReproWorkingDirectoryAsOutput.test_nested.with_patch_object_self_dv.with_self_assertRaises_St.self_dvc_reproduce_error_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproWorkingDirectoryAsOutput.test_nested_TestReproWorkingDirectoryAsOutput.test_nested.with_patch_object_self_dv.with_self_assertRaises_St.self_dvc_reproduce_error_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 157, "end_line": 202, "span_ids": ["TestReproWorkingDirectoryAsOutput.test_nested"], "tokens": 391}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproWorkingDirectoryAsOutput(TestDvc):\n\n    def test_nested(self):\n        #       .\n        #       |-- a\n        #       |  |__ nested\n        #       |     |__ dir\n        #       |       |__ error.dvc     (stage.cwd == 'a/nested/dir')\n        #       |__ b\n        #          |__ nested.dvc         (stage.out == 'a/nested')\n        dir1 = \"b\"\n        dir2 = \"a\"\n\n        os.mkdir(dir1)\n        os.mkdir(dir2)\n\n        nested_dir = os.path.join(dir2, \"nested\")\n        out_dir = relpath(nested_dir, dir1)\n\n        nested_stage = self.dvc.run(\n            fname=os.path.join(dir1, \"b.dvc\"),\n            wdir=dir1,\n            outs=[out_dir],  # ../a/nested\n            cmd=f\"mkdir {out_dir}\",\n            single_stage=True,\n        )\n\n        os.mkdir(os.path.join(nested_dir, \"dir\"))\n\n        error_stage_path = os.path.join(nested_dir, \"dir\", \"error.dvc\")\n\n        output = os.path.join(\"..\", \"..\", \"something\")\n        stage_dump = {\n            \"cmd\": f\"echo something > {output}\",\n            \"outs\": [{\"path\": output}],\n        }\n        dump_yaml(error_stage_path, stage_dump)\n\n        # NOTE: os.walk() walks in a sorted order and we need dir2 subdirs to\n        # be processed before dir1 to load error.dvc first.\n        self.dvc.stages = [\n            nested_stage,\n            Dvcfile(self.dvc, error_stage_path).stage,\n        ]\n\n        with patch.object(self.dvc, \"_reset\"):  # to prevent `stages` resetting\n            with self.assertRaises(StagePathAsOutputError):\n                self.dvc.reproduce(error_stage_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_repro_dir_repro_dir.yield_stages": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_repro_dir_repro_dir.yield_stages", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1438, "end_line": 1513, "span_ids": ["repro_dir"], "tokens": 621}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef repro_dir(tmp_dir, dvc, run_copy):\n    # Creates repo with following structure:\n    #    data_dir/dir_file              origin_data\n    #         |       |                   |\n    #         |       |              origin_copy.dvc\n    # unrelated2.dvc  |               |       |\n    #                 |               |    unrelated1.dvc\n    #    dir/subdir/dir_file_copy.dvc |\n    #                  |              |\n    #                  |        dir/origin_copy_2.dvc\n    #                  |            |\n    #                   \\          /\n    #                    \\        /\n    #                   dir/Dvcfile\n    tmp_dir.gen(\n        {\n            \"origin_data\": \"origin data content\",\n            \"data_dir\": {\"dir_file\": \"dir file content\"},\n            \"dir\": {\"subdir\": {}},\n        }\n    )\n\n    stages = {}\n\n    origin_copy = tmp_dir / \"origin_copy\"\n    stage = run_copy(\"origin_data\", os.fspath(origin_copy), single_stage=True)\n    assert stage is not None\n    assert origin_copy.read_text() == \"origin data content\"\n    stages[\"origin_copy\"] = stage\n\n    origin_copy_2 = tmp_dir / \"dir\" / \"origin_copy_2\"\n    stage = run_copy(\n        os.fspath(origin_copy),\n        os.fspath(origin_copy_2),\n        fname=os.fspath(origin_copy_2) + \".dvc\",\n        single_stage=True,\n    )\n    assert stage is not None\n    assert origin_copy_2.read_text() == \"origin data content\"\n    stages[\"origin_copy_2\"] = stage\n\n    dir_file_path = tmp_dir / \"data_dir\" / \"dir_file\"\n    dir_file_copy = tmp_dir / \"dir\" / \"subdir\" / \"dir_file_copy\"\n    stage = run_copy(\n        os.fspath(dir_file_path),\n        os.fspath(dir_file_copy),\n        fname=os.fspath(dir_file_copy) + \".dvc\",\n        single_stage=True,\n    )\n    assert stage is not None\n    assert dir_file_copy.read_text() == \"dir file content\"\n    stages[\"dir_file_copy\"] = stage\n\n    last_stage = tmp_dir / \"dir\" / DVC_FILE\n    deps = [os.fspath(origin_copy_2), os.fspath(dir_file_copy)]\n    stage = dvc.run(\n        cmd=\"echo {}\".format(\" \".join(deps)),\n        fname=os.fspath(last_stage),\n        deps=deps,\n        single_stage=True,\n    )\n    assert stage is not None\n    stages[\"last_stage\"] = stage\n\n    # Unrelated are to verify that reproducing `dir` will not trigger them too\n    assert (\n        run_copy(os.fspath(origin_copy), \"unrelated1\", single_stage=True)\n        is not None\n    )\n    assert (\n        run_copy(os.fspath(dir_file_path), \"unrelated2\", single_stage=True)\n        is not None\n    )\n\n    yield stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py__rewrite_file_test_recursive_repro_default.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py__rewrite_file_test_recursive_repro_default.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1435, "end_line": 1463, "span_ids": ["_read_out", "test_recursive_repro_default", "_rewrite_file"], "tokens": 229}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _rewrite_file(path_elements, new_content):\n    if isinstance(path_elements, str):\n        path_elements = [path_elements]\n    file = Path(os.sep.join(path_elements))\n    file.unlink()\n    file.write_text(new_content)\n\n\ndef _read_out(stage):\n    return Path(stage.outs[0].fspath).read_text()\n\n\ndef test_recursive_repro_default(dvc, repro_dir):\n    \"\"\"\n    Test recursive repro on dir after a dep outside this dir has changed.\n    \"\"\"\n    _rewrite_file(\"origin_data\", \"new origin data content\")\n\n    stages = dvc.reproduce(\"dir\", recursive=True)\n\n    # Check that the dependency (\"origin_copy\") and the dependent stages\n    # inside the folder have been reproduced (\"origin_copy_2\", \"last_stage\")\n    assert stages == [\n        repro_dir[\"origin_copy\"],\n        repro_dir[\"origin_copy_2\"],\n        repro_dir[\"last_stage\"],\n    ]\n    assert _read_out(repro_dir[\"origin_copy\"]) == \"new origin data content\"\n    assert _read_out(repro_dir[\"origin_copy_2\"]) == \"new origin data content\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_recursive_repro_single_test_recursive_repro_single.assert__read_out_repro_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_recursive_repro_single_test_recursive_repro_single.assert__read_out_repro_di", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1466, "end_line": 1481, "span_ids": ["test_recursive_repro_single"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_recursive_repro_single(dvc, repro_dir):\n    \"\"\"\n    Test recursive single-item repro on dir\n    after a dep outside this dir has changed.\n    \"\"\"\n    _rewrite_file(\"origin_data\", \"new origin content\")\n    _rewrite_file([\"data_dir\", \"dir_file\"], \"new dir file content\")\n\n    stages = dvc.reproduce(\"dir\", recursive=True, single_item=True)\n    # Check that just stages inside given dir\n    # with changed direct deps have been reproduced.\n    # This means that \"origin_copy_2\" stage should not be reproduced\n    # since it depends on \"origin_copy\".\n    # Also check that \"dir_file_copy\" stage was reproduced before \"last_stage\"\n    assert stages == [repro_dir[\"dir_file_copy\"], repro_dir[\"last_stage\"]]\n    assert _read_out(repro_dir[\"dir_file_copy\"]) == \"new dir file content\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_recursive_repro_single_force_test_recursive_repro_single_force.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_recursive_repro_single_force_test_recursive_repro_single_force.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1484, "end_line": 1504, "span_ids": ["test_recursive_repro_single_force"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_recursive_repro_single_force(dvc, repro_dir):\n    \"\"\"\n    Test recursive single-item force repro on dir\n    without any dependencies changing.\n    \"\"\"\n    stages = dvc.reproduce(\"dir\", recursive=True, single_item=True, force=True)\n    # Check that all stages inside given dir have been reproduced\n    # Also check that \"dir_file_copy\" stage was reproduced before \"last_stage\"\n    # and that \"origin_copy\" stage was reproduced before \"last_stage\" stage\n    assert len(stages) == 3\n    assert set(stages) == {\n        repro_dir[\"origin_copy_2\"],\n        repro_dir[\"dir_file_copy\"],\n        repro_dir[\"last_stage\"],\n    }\n    assert stages.index(repro_dir[\"origin_copy_2\"]) < stages.index(\n        repro_dir[\"last_stage\"]\n    )\n    assert stages.index(repro_dir[\"dir_file_copy\"]) < stages.index(\n        repro_dir[\"last_stage\"]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_recursive_repro_empty_dir_test_recursive_repro_on_stage_file.assert_stages_repro_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_recursive_repro_empty_dir_test_recursive_repro_on_stage_file.assert_stages_repro_d", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1507, "end_line": 1534, "span_ids": ["test_recursive_repro_recursive_missing_file", "test_recursive_repro_on_stage_file", "test_recursive_repro_empty_dir"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_recursive_repro_empty_dir(tmp_dir, dvc):\n    \"\"\"\n    Test recursive repro on an empty directory\n    \"\"\"\n    (tmp_dir / \"emptydir\").mkdir()\n\n    stages = dvc.reproduce(\"emptydir\", recursive=True, force=True)\n    assert stages == []\n\n\ndef test_recursive_repro_recursive_missing_file(dvc):\n    \"\"\"\n    Test recursive repro on a missing file\n    \"\"\"\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.reproduce(\"notExistingStage.dvc\", recursive=True)\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.reproduce(\"notExistingDir/\", recursive=True)\n\n\ndef test_recursive_repro_on_stage_file(dvc, repro_dir):\n    \"\"\"\n    Test recursive repro on a stage file instead of directory\n    \"\"\"\n    stages = dvc.reproduce(\n        repro_dir[\"origin_copy_2\"].relpath, recursive=True, force=True\n    )\n    assert stages == [repro_dir[\"origin_copy\"], repro_dir[\"origin_copy_2\"]]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_get_gitignore_subdir_test_get_gitignore_subdir.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_get_gitignore_subdir_test_get_gitignore_subdir.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 124, "end_line": 135, "span_ids": ["test_get_gitignore_subdir"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_gitignore_subdir(tmp_dir, scm):\n    tmp_dir.gen({\"dir1\": {\"file1\": \"cont\", \"dir2\": {}}})\n\n    data_dir = os.fspath(tmp_dir / \"dir1\" / \"file1\")\n    entry, gitignore = scm._get_gitignore(data_dir)\n    assert entry == \"/file1\"\n    assert gitignore == os.fspath(tmp_dir / \"dir1\" / \".gitignore\")\n\n    data_dir = os.fspath(tmp_dir / \"dir1\" / \"dir2\")\n    entry, gitignore = scm._get_gitignore(data_dir)\n    assert entry == \"/dir2\"\n    assert gitignore == os.fspath(tmp_dir / \"dir1\" / \".gitignore\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestDefaultWorkingDirectory_TestDefaultWorkingDirectory.test_ignored_in_checksum.with_self_dvc_lock_self_.self_assertFalse_stage_ch": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_TestDefaultWorkingDirectory_TestDefaultWorkingDirectory.test_ignored_in_checksum.with_self_dvc_lock_self_.self_assertFalse_stage_ch", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 94, "end_line": 111, "span_ids": ["TestDefaultWorkingDirectory", "TestDefaultWorkingDirectory.test_ignored_in_checksum"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestDefaultWorkingDirectory(TestDvc):\n    def test_ignored_in_checksum(self):\n        stage = self.dvc.run(\n            cmd=f\"echo test > {self.FOO}\",\n            deps=[self.BAR],\n            outs=[self.FOO],\n            single_stage=True,\n        )\n\n        d = stage.dumpd()\n        self.assertNotIn(Stage.PARAM_WDIR, d.keys())\n\n        d = load_yaml(stage.relpath)\n        self.assertNotIn(Stage.PARAM_WDIR, d.keys())\n\n        with self.dvc.lock, self.dvc.state:\n            stage = SingleStageFile(self.dvc, stage.relpath).stage\n            self.assertFalse(stage.changed())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_md5_ignores_comments_test_meta_is_preserved.assert_new_data_meta_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_md5_ignores_comments_test_meta_is_preserved.assert_new_data_meta_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 156, "end_line": 180, "span_ids": ["test_meta_is_preserved", "test_md5_ignores_comments"], "tokens": 208}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_md5_ignores_comments(tmp_dir, dvc):\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo content\")\n\n    with open(stage.path, \"a\") as f:\n        f.write(\"# End comment\\n\")\n\n    new_stage = SingleStageFile(dvc, stage.path).stage\n    assert not new_stage.changed_stage()\n\n\ndef test_meta_is_preserved(tmp_dir, dvc):\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo content\")\n\n    # Add meta to DVC-file\n    data = load_yaml(stage.path)\n    data[\"meta\"] = {\"custom_key\": 42}\n    dump_yaml(stage.path, data)\n\n    # Loading and dumping to test that it works and meta is retained\n    dvcfile = SingleStageFile(dvc, stage.path)\n    new_stage = dvcfile.stage\n    dvcfile.dump(new_stage)\n\n    new_data = load_yaml(stage.path)\n    assert new_data[\"meta\"] == data[\"meta\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_remove_links_test_remove_links.with_dvc_state_.assert_result_0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_remove_links_test_remove_links.with_dvc_state_.assert_result_0", "embedding": null, "metadata": {"file_path": "tests/func/test_state.py", "file_name": "test_state.py", "file_type": "text/x-python", "category": "test", "start_line": 73, "end_line": 86, "span_ids": ["test_remove_links"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_links(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo_content\", \"bar\": \"bar_content\"})\n\n    with dvc.state:\n        cmd_count_links = \"SELECT count(*) FROM {}\".format(\n            State.LINK_STATE_TABLE\n        )\n        result = dvc.state._execute(cmd_count_links).fetchone()[0]\n        assert result == 2\n\n        dvc.state.remove_links([\"foo\", \"bar\"])\n\n        result = dvc.state._execute(cmd_count_links).fetchone()[0]\n        assert result == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_get_unused_links_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_test_get_unused_links_", "embedding": null, "metadata": {"file_path": "tests/func/test_state.py", "file_name": "test_state.py", "file_type": "text/x-python", "category": "test", "start_line": 89, "end_line": 103, "span_ids": ["test_get_unused_links"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_unused_links(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo_content\", \"bar\": \"bar_content\"})\n\n    with dvc.state:\n        links = [os.path.join(dvc.root_dir, link) for link in [\"foo\", \"bar\"]]\n        assert set(dvc.state.get_unused_links([])) == {\"foo\", \"bar\"}\n        assert set(dvc.state.get_unused_links(links[:1])) == {\"bar\"}\n        assert set(dvc.state.get_unused_links(links)) == set()\n        assert set(\n            dvc.state.get_unused_links(\n                used=links[:1]\n                + [os.path.join(dvc.root_dir, \"not-existing-file\")]\n            )\n        ) == {\"bar\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_non_dvc_repo_import_test_status_non_dvc_repo_import.assert_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_non_dvc_repo_import_test_status_non_dvc_repo_import.assert_status_", "embedding": null, "metadata": {"file_path": "tests/func/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 28, "end_line": 42, "span_ids": ["test_status_non_dvc_repo_import"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_status_non_dvc_repo_import(tmp_dir, dvc, git_dir):\n    with git_dir.branch(\"branch\", new=True):\n        git_dir.scm_gen(\"file\", \"first version\", commit=\"first version\")\n\n    dvc.imp(os.fspath(git_dir), \"file\", \"file\", rev=\"branch\")\n\n    assert dvc.status([\"file.dvc\"]) == {}\n\n    with git_dir.branch(\"branch\", new=False):\n        git_dir.scm_gen(\"file\", \"second version\", commit=\"update file\")\n\n    (status,) = dvc.status([\"file.dvc\"])[\"file.dvc\"]\n    assert status == {\n        \"changed deps\": {f\"file ({git_dir})\": \"update available\"}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestGitTree_AssertWalkEqualMixin.assertWalkEqual.self_assertEqual_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestGitTree_AssertWalkEqualMixin.assertWalkEqual.self_assertEqual_", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 114, "span_ids": ["TestGitTree.setUp", "TestGitTree", "AssertWalkEqualMixin", "AssertWalkEqualMixin.assertWalkEqual", "TestGitSubmoduleTree", "TestGitSubmoduleTree.setUp"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGitTree(TestGit, GitTreeTests):\n    def setUp(self):\n        super().setUp()\n        self.scm = SCM(self._root_dir)\n\n\nclass TestGitSubmoduleTree(TestGitSubmodule, GitTreeTests):\n    def setUp(self):\n        super().setUp()\n        self.scm = SCM(self._root_dir)\n        self._pushd(self._root_dir)\n\n\nclass AssertWalkEqualMixin:\n    def assertWalkEqual(self, actual, expected, msg=None):\n        def convert_to_sets(walk_results):\n            return [\n                (root, set(dirs), set(nondirs))\n                for root, dirs, nondirs in walk_results\n            ]\n\n        self.assertEqual(\n            convert_to_sets(actual), convert_to_sets(expected), msg=msg\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestWalkInNoSCM_TestWalkInNoSCM.test_subdir.self_assertWalkEqual_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestWalkInNoSCM_TestWalkInNoSCM.test_subdir.self_assertWalkEqual_", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 117, "end_line": 142, "span_ids": ["TestWalkInNoSCM.test_subdir", "TestWalkInNoSCM.test", "TestWalkInNoSCM"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestWalkInNoSCM(AssertWalkEqualMixin, TestDir):\n    def test(self):\n        tree = LocalTree(None, {\"url\": self._root_dir})\n        self.assertWalkEqual(\n            tree.walk(self._root_dir),\n            [\n                (\n                    self._root_dir,\n                    [\"data_dir\"],\n                    [\"code.py\", \"bar\", \"\u0442\u0435\u0441\u0442\", \"foo\"],\n                ),\n                (join(self._root_dir, \"data_dir\"), [\"data_sub_dir\"], [\"data\"]),\n                (\n                    join(self._root_dir, \"data_dir\", \"data_sub_dir\"),\n                    [],\n                    [\"data_sub\"],\n                ),\n            ],\n        )\n\n    def test_subdir(self):\n        tree = LocalTree(None, {\"url\": self._root_dir})\n        self.assertWalkEqual(\n            tree.walk(join(\"data_dir\", \"data_sub_dir\")),\n            [(join(\"data_dir\", \"data_sub_dir\"), [], [\"data_sub\"])],\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_import_after_remote_updates_to_dvc_test_update_import_after_remote_updates_to_dvc.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_import_after_remote_updates_to_dvc_test_update_import_after_remote_updates_to_dvc.None_11", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 81, "end_line": 125, "span_ids": ["test_update_import_after_remote_updates_to_dvc"], "tokens": 390}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_update_import_after_remote_updates_to_dvc(tmp_dir, dvc, erepo_dir):\n    old_rev = None\n    with erepo_dir.branch(\"branch\", new=True), erepo_dir.chdir():\n        erepo_dir.scm_gen(\"version\", \"branch\", commit=\"add version file\")\n        old_rev = erepo_dir.scm.get_rev()\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"version\", \"version\", rev=\"branch\")\n\n    imported = tmp_dir / \"version\"\n    assert imported.is_file()\n    assert imported.read_text() == \"branch\"\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev\": \"branch\",\n        \"rev_lock\": old_rev,\n    }\n\n    new_rev = None\n    with erepo_dir.branch(\"branch\", new=False), erepo_dir.chdir():\n        erepo_dir.scm.gitpython.repo.index.remove([\"version\"])\n        erepo_dir.dvc_gen(\n            \"version\", \"updated\", commit=\"upgrade to DVC tracking\"\n        )\n        new_rev = erepo_dir.scm.get_rev()\n\n    assert old_rev != new_rev\n\n    (status,) = dvc.status([stage.path])[\"version.dvc\"]\n    (changed_dep,) = list(status[\"changed deps\"].items())\n    assert changed_dep[0].startswith(\"version \")\n    assert changed_dep[1] == \"update available\"\n\n    dvc.update([stage.path])\n\n    assert dvc.status([stage.path]) == {}\n\n    assert imported.is_file()\n    assert imported.read_text() == \"updated\"\n\n    stage = Dvcfile(dvc, stage.path).stage\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev\": \"branch\",\n        \"rev_lock\": new_rev,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_before_and_after_dvc_init_test_update_before_and_after_dvc_init.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_before_and_after_dvc_init_test_update_before_and_after_dvc_init.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 128, "end_line": 157, "span_ids": ["test_update_before_and_after_dvc_init"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_update_before_and_after_dvc_init(tmp_dir, dvc, git_dir):\n    with git_dir.chdir():\n        git_dir.scm_gen(\"file\", \"first version\", commit=\"first version\")\n        old_rev = git_dir.scm.get_rev()\n\n    stage = dvc.imp(os.fspath(git_dir), \"file\", \"file\")\n\n    with git_dir.chdir():\n        git_dir.init(dvc=True)\n        git_dir.scm.gitpython.repo.index.remove([\"file\"])\n        os.remove(\"file\")\n        git_dir.dvc_gen(\"file\", \"second version\", commit=\"with dvc\")\n        new_rev = git_dir.scm.get_rev()\n\n    assert old_rev != new_rev\n\n    assert dvc.status([stage.path]) == {\n        \"file.dvc\": [\n            {\n                \"changed deps\": {\n                    \"file ({})\".format(os.fspath(git_dir)): \"update available\"\n                }\n            }\n        ]\n    }\n\n    dvc.update([stage.path])\n\n    assert (tmp_dir / \"file\").read_text() == \"second version\"\n    assert dvc.status([stage.path]) == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_import_url_test_update_import_url.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_import_url_test_update_import_url.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 160, "end_line": 194, "span_ids": ["test_update_import_url"], "tokens": 226}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace\",\n    [\n        pytest.lazy_fixture(\"local_cloud\"),\n        pytest.lazy_fixture(\"s3\"),\n        pytest.lazy_fixture(\"gs\"),\n        pytest.lazy_fixture(\"hdfs\"),\n        pytest.lazy_fixture(\"webhdfs\"),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n    ],\n    indirect=True,\n)\ndef test_update_import_url(tmp_dir, dvc, workspace):\n    workspace.gen(\"file\", \"file content\")\n\n    dst = tmp_dir / \"imported_file\"\n    stage = dvc.imp_url(\"remote://workspace/file\", os.fspath(dst))\n\n    assert dst.is_file()\n    assert dst.read_text() == \"file content\"\n\n    # update data\n    workspace.gen(\"file\", \"updated file content\")\n\n    assert dvc.status([stage.path]) == {}\n    dvc.update([stage.path])\n    assert dvc.status([stage.path]) == {}\n\n    assert dst.is_file()\n    assert dst.read_text() == \"updated file content\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/ls/test_ls.py_from_dvc_cli_import_parse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/ls/test_ls.py_from_dvc_cli_import_parse_", "embedding": null, "metadata": {"file_path": "tests/unit/command/ls/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 55, "span_ids": ["test_list_git_ssh_rev", "test_list_recursive", "imports", "test_list_outputs_only", "_test_cli", "test_list_targets", "test_list"], "tokens": 365}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.ls import CmdList\n\n\ndef _test_cli(mocker, *args):\n    cli_args = parse_args([\"list\", *args])\n    assert cli_args.func == CmdList\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.Repo.ls\")\n\n    assert cmd.run() == 0\n    return m\n\n\ndef test_list(mocker):\n    url = \"local_dir\"\n    m = _test_cli(mocker, url)\n    m.assert_called_once_with(\n        url, None, recursive=False, rev=None, dvc_only=False\n    )\n\n\ndef test_list_recursive(mocker):\n    url = \"local_dir\"\n    m = _test_cli(mocker, url, \"-R\")\n    m.assert_called_once_with(\n        url, None, recursive=True, rev=None, dvc_only=False\n    )\n\n\ndef test_list_git_ssh_rev(mocker):\n    url = \"git@github.com:repo\"\n    m = _test_cli(mocker, url, \"--rev\", \"123\")\n    m.assert_called_once_with(\n        url, None, recursive=False, rev=\"123\", dvc_only=False\n    )\n\n\ndef test_list_targets(mocker):\n    url = \"local_dir\"\n    target = \"subdir\"\n    m = _test_cli(mocker, url, target)\n    m.assert_called_once_with(\n        url, target, recursive=False, rev=None, dvc_only=False\n    )\n\n\ndef test_list_outputs_only(mocker):\n    url = \"local_dir\"\n    m = _test_cli(mocker, url, None, \"--dvc-only\")\n    m.assert_called_once_with(\n        url, None, recursive=False, rev=None, dvc_only=True\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/ls/test_ls_colors.py_from_dvc_command_ls_ls_co_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/ls/test_ls_colors.py_from_dvc_command_ls_ls_co_", "embedding": null, "metadata": {"file_path": "tests/unit/command/ls/test_ls_colors.py", "file_name": "test_ls_colors.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 59, "span_ids": ["test_ls_colors_dir", "test_ls_colors_out_file", "test_ls_colors_exec", "imports", "test_ls_colors_file", "colorize", "test_ls_colors_out_exec", "test_ls_colors_out_dir", "test_ls_colors_ext", "test_ls_colors_out_ext"], "tokens": 472}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.command.ls.ls_colors import LsColors\n\n\ndef colorize(ls_colors):\n    def _colorize(f, spec=\"\"):\n        fs_path = {\n            \"path\": f,\n            \"isexec\": \"e\" in spec,\n            \"isdir\": \"d\" in spec,\n            \"isout\": \"o\" in spec,\n        }\n        return ls_colors.format(fs_path)\n\n    return _colorize\n\n\ndef test_ls_colors_out_file():\n    ls_colors = LsColors(LsColors.default)\n    assert colorize(ls_colors)(\"file\", \"o\") == \"file\"\n\n\ndef test_ls_colors_out_dir():\n    ls_colors = LsColors(LsColors.default)\n    assert colorize(ls_colors)(\"dir\", \"do\") == \"\\x1b[01;34mdir\\x1b[0m\"\n\n\ndef test_ls_colors_out_exec():\n    ls_colors = LsColors(LsColors.default)\n    assert (\n        colorize(ls_colors)(\"script.sh\", \"eo\") == \"\\x1b[01;32mscript.sh\\x1b[0m\"\n    )\n\n\ndef test_ls_colors_out_ext():\n    ls_colors = LsColors(LsColors.default + \":*.xml=01;33\")\n    assert colorize(ls_colors)(\"file.xml\", \"o\") == \"\\x1b[01;33mfile.xml\\x1b[0m\"\n\n\ndef test_ls_colors_file():\n    ls_colors = LsColors(LsColors.default)\n    assert colorize(ls_colors)(\"file\") == \"file\"\n\n\ndef test_ls_colors_dir():\n    ls_colors = LsColors(LsColors.default)\n    assert colorize(ls_colors)(\"dir\", \"d\") == \"\\x1b[01;34mdir\\x1b[0m\"\n\n\ndef test_ls_colors_exec():\n    ls_colors = LsColors(LsColors.default)\n    assert (\n        colorize(ls_colors)(\"script.sh\", \"e\") == \"\\x1b[01;32mscript.sh\\x1b[0m\"\n    )\n\n\ndef test_ls_colors_ext():\n    ls_colors = LsColors(LsColors.default + \":*.xml=01;33\")\n    assert colorize(ls_colors)(\"file.xml\") == \"\\x1b[01;33mfile.xml\\x1b[0m\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_checkout.py_logging_test_checkout.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_checkout.py_logging_test_checkout.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 23, "span_ids": ["imports", "test_checkout"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.cli import parse_args\nfrom dvc.command.checkout import CmdCheckout, log_changes\n\n\ndef test_checkout(tmp_dir, dvc, mocker):\n    cli_args = parse_args(\n        [\"checkout\", \"foo.dvc\", \"bar.dvc\", \"--relink\", \"--with-deps\"]\n    )\n    assert cli_args.func == CmdCheckout\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.Repo.checkout\")\n\n    assert cmd.run() == 0\n    m.assert_called_once_with(\n        targets=[\"foo.dvc\", \"bar.dvc\"],\n        force=False,\n        recursive=False,\n        relink=True,\n        with_deps=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_checkout.py_test_log_changes_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_checkout.py_test_log_changes_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 53, "end_line": 77, "span_ids": ["test_log_changes"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_log_changes(caplog):\n    stats = {\n        \"added\": [\"file1\", \"dir1/\"],\n        \"deleted\": [\"dir2/\"],\n        \"modified\": [\"file2\"],\n    }\n\n    from itertools import zip_longest\n\n    def _assert_output(stats, expected_outs):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            caplog.clear()\n            log_changes(stats)\n            actual_output = caplog.text.splitlines()\n            for out, line in zip_longest(expected_outs, actual_output):\n                assert out in line\n\n    _assert_output(stats, [\"M\\tfile2\", \"A\\tfile1\", \"A\\tdir1/\", \"D\\tdir2/\"])\n\n    del stats[\"deleted\"][0]\n    _assert_output(stats, [\"M\\tfile2\", \"A\\tfile1\", \"A\\tdir1/\"])\n\n    del stats[\"modified\"]\n    _assert_output(stats, [\"A\\tfile1\", \"A\\tdir1/\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_hash_test_show_hash.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_hash_test_show_hash.assert_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 44, "end_line": 73, "span_ids": ["test_show_hash"], "tokens": 344}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_hash(mocker, caplog):\n    args = parse_args([\"diff\", \"--show-hash\"])\n    cmd = args.func(args)\n    diff = {\n        \"added\": [],\n        \"deleted\": [\n            {\"path\": os.path.join(\"data\", \"\"), \"hash\": \"XXXXXXXX.dir\"},\n            {\"path\": os.path.join(\"data\", \"foo\"), \"hash\": \"11111111\"},\n            {\"path\": os.path.join(\"data\", \"bar\"), \"hash\": \"00000000\"},\n        ],\n        \"modified\": [\n            {\"path\": \"file2\", \"hash\": {\"old\": \"AAAAAAAA\", \"new\": \"BBBBBBBB\"}},\n            {\"path\": \"file1\", \"hash\": {\"old\": \"CCCCCCCC\", \"new\": \"DDDDDDDD\"}},\n        ],\n        \"not in cache\": [],\n    }\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff)\n    assert 0 == cmd.run()\n    assert (\n        \"Deleted:\\n\"\n        \"    XXXXXXXX  \" + os.path.join(\"data\", \"\") + \"\\n\"\n        \"    00000000  \" + os.path.join(\"data\", \"bar\") + \"\\n\"\n        \"    11111111  \" + os.path.join(\"data\", \"foo\") + \"\\n\"\n        \"\\n\"\n        \"Modified:\\n\"\n        \"    CCCCCCCC..DDDDDDDD  file1\\n\"\n        \"    AAAAAAAA..BBBBBBBB  file2\\n\"\n        \"\\n\"\n        \"files summary: 0 added, 2 deleted, 2 modified, 0 not in cache\"\n    ) in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_get.py_from_dvc_cli_import_parse_test_get.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_get.py_from_dvc_cli_import_parse_test_get.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 16, "span_ids": ["imports", "test_get"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.get import CmdGet\n\n\ndef test_get(mocker):\n    cli_args = parse_args(\n        [\"get\", \"repo_url\", \"src\", \"--out\", \"out\", \"--rev\", \"version\"]\n    )\n    assert cli_args.func == CmdGet\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.Repo.get\")\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\"repo_url\", path=\"src\", out=\"out\", rev=\"version\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_get.py_test_get_url_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_get.py_test_get_url_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 19, "end_line": 32, "span_ids": ["test_get_url"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_url(mocker, caplog):\n    cli_args = parse_args(\n        [\"get\", \"repo_url\", \"src\", \"--rev\", \"version\", \"--show-url\"]\n    )\n    assert cli_args.func == CmdGet\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.api.get_url\", return_value=\"resource_url\")\n\n    assert cmd.run() == 0\n    assert \"resource_url\" in caplog.text\n\n    m.assert_called_once_with(\"src\", repo=\"repo_url\", rev=\"version\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp_url.py_logging_test_import_url.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp_url.py_logging_test_import_url.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_imp_url.py", "file_name": "test_imp_url.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 21, "span_ids": ["imports", "test_import_url"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.cli import parse_args\nfrom dvc.command.imp_url import CmdImportUrl\nfrom dvc.exceptions import DvcException\n\n\ndef test_import_url(mocker):\n    cli_args = parse_args(\n        [\"import-url\", \"src\", \"out\", \"--file\", \"file\", \"--desc\", \"description\"]\n    )\n    assert cli_args.func == CmdImportUrl\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"imp_url\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        \"src\", out=\"out\", fname=\"file\", no_exec=False, desc=\"description\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_repro.py_from_dvc_cli_import_parse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_repro.py_from_dvc_cli_import_parse_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["test_downstream", "imports", "test_default_arguments"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.repro import CmdRepro\n\ndefault_arguments = {\n    \"all_pipelines\": False,\n    \"downstream\": False,\n    \"dry\": False,\n    \"force\": False,\n    \"run_cache\": True,\n    \"interactive\": False,\n    \"no_commit\": False,\n    \"pipeline\": False,\n    \"single_item\": False,\n    \"recursive\": False,\n    \"force_downstream\": False,\n    \"pull\": False,\n    \"glob\": False,\n    \"targets\": [],\n}\n\n\ndef test_default_arguments(dvc, mocker):\n    cmd = CmdRepro(parse_args([\"repro\"]))\n    mocker.patch.object(cmd.repo, \"reproduce\")\n    cmd.run()\n    cmd.repo.reproduce.assert_called_with(**default_arguments)\n\n\ndef test_downstream(dvc, mocker):\n    cmd = CmdRepro(parse_args([\"repro\", \"--downstream\"]))\n    mocker.patch.object(cmd.repo, \"reproduce\")\n    cmd.run()\n    arguments = default_arguments.copy()\n    arguments.update({\"downstream\": True})\n    cmd.repo.reproduce.assert_called_with(**arguments)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_local.py_os_test_str_on_external_absolute_path.assert_str_output_abs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_local.py_os_test_str_on_external_absolute_path.assert_str_output_abs", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_local.py", "file_name": "test_local.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 69, "span_ids": ["TestLocalOutput.test_save_missing", "imports", "TestLocalOutput._get_output", "test_str_workdir_inside_repo", "TestLocalOutput", "TestLocalOutput._get_cls", "test_str_workdir_outside_repo", "test_str_on_local_absolute_path", "test_str_on_external_absolute_path"], "tokens": 468}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom mock import patch\n\nfrom dvc.cache.local import LocalCache\nfrom dvc.dir_info import DirInfo\nfrom dvc.hash_info import HashInfo\nfrom dvc.output import LocalOutput\nfrom dvc.stage import Stage\nfrom dvc.utils import relpath\nfrom tests.basic_env import TestDvc\n\n\nclass TestLocalOutput(TestDvc):\n    def _get_cls(self):\n        return LocalOutput\n\n    def _get_output(self):\n        stage = Stage(self.dvc)\n        return self._get_cls()(stage, \"path\", cache=False)\n\n    def test_save_missing(self):\n        o = self._get_output()\n        with patch.object(o.tree, \"exists\", return_value=False):\n            with self.assertRaises(o.DoesNotExistError):\n                o.save()\n\n\ndef test_str_workdir_outside_repo(tmp_dir, erepo_dir):\n    stage = Stage(erepo_dir.dvc)\n    output = LocalOutput(stage, \"path\", cache=False)\n\n    assert relpath(\"path\", erepo_dir.dvc.root_dir) == str(output)\n\n\ndef test_str_workdir_inside_repo(dvc):\n    stage = Stage(dvc)\n    output = LocalOutput(stage, \"path\", cache=False)\n\n    assert \"path\" == str(output)\n\n    stage = Stage(dvc, wdir=\"some_folder\")\n    output = LocalOutput(stage, \"path\", cache=False)\n\n    assert os.path.join(\"some_folder\", \"path\") == str(output)\n\n\ndef test_str_on_local_absolute_path(dvc):\n    stage = Stage(dvc)\n\n    rel_path = os.path.join(\"path\", \"to\", \"file\")\n    abs_path = os.path.abspath(rel_path)\n    output = LocalOutput(stage, abs_path, cache=False)\n\n    assert output.def_path == rel_path\n    assert output.path_info.fspath == abs_path\n    assert str(output) == rel_path\n\n\ndef test_str_on_external_absolute_path(dvc):\n    stage = Stage(dvc)\n\n    rel_path = os.path.join(\"..\", \"path\", \"to\", \"file\")\n    abs_path = os.path.abspath(rel_path)\n    output = LocalOutput(stage, abs_path, cache=False)\n\n    assert output.def_path == abs_path\n    assert output.path_info.fspath == abs_path\n    assert str(output) == abs_path", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_output.py_logging_test_checksum_schema.assert_Schema_CHECKSUM_SC": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_output.py_logging_test_checksum_schema.assert_Schema_CHECKSUM_SC", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_output.py", "file_name": "test_output.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["test_checksum_schema", "imports"], "tokens": 368}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nimport pytest\nfrom funcy import first\nfrom voluptuous import MultipleInvalid, Schema\n\nfrom dvc.cache import NamedCache\nfrom dvc.ignore import _no_match\nfrom dvc.output import CHECKSUM_SCHEMA, BaseOutput\n\n\n@pytest.mark.parametrize(\n    \"value,expected\",\n    [\n        (\"\", None),\n        (None, None),\n        (11111, \"11111\"),\n        (\"11111\", \"11111\"),\n        (\"aAaBa\", \"aaaba\"),\n        (\n            \"3cc286c534a71504476da009ed174423\",\n            \"3cc286c534a71504476da009ed174423\",\n        ),  # md5\n        (\n            \"d41d8cd98f00b204e9800998ecf8427e-38\",\n            \"d41d8cd98f00b204e9800998ecf8427e-38\",\n        ),  # etag\n        (\n            \"000002000000000000000000c16859d1d071c6b1ffc9c8557d4909f1\",\n            \"000002000000000000000000c16859d1d071c6b1ffc9c8557d4909f1\",\n        ),  # hdfs checksum\n        # Not much we can do about hex and oct values without writing our own\n        # parser. So listing these test cases just to acknowledge this.\n        # See https://github.com/iterative/dvc/issues/3331.\n        (0x3451, \"13393\"),\n        (0o1244, \"676\"),\n    ],\n)\ndef test_checksum_schema(value, expected):\n    assert Schema(CHECKSUM_SCHEMA)(value) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_output.py_test_checksum_schema_fail_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_output.py_test_checksum_schema_fail_", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_output.py", "file_name": "test_output.py", "file_type": "text/x-python", "category": "test", "start_line": 43, "end_line": 93, "span_ids": ["test_get_used_cache", "test_checksum_schema_fail"], "tokens": 398}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"value\", [\"1\", \"11\", {}, {\"a\": \"b\"}, [], [1, 2]])\ndef test_checksum_schema_fail(value):\n    with pytest.raises(MultipleInvalid):\n        assert Schema(CHECKSUM_SCHEMA)(value)\n\n\n@pytest.mark.parametrize(\n    \"exists, expected_message\",\n    [\n        (\n            False,\n            (\n                \"Output 'path'(stage: 'stage.dvc') is missing version info. \"\n                \"Cache for it will not be collected. \"\n                \"Use `dvc repro` to get your pipeline up to date.\"\n            ),\n        ),\n        (\n            True,\n            (\n                \"Output 'path'(stage: 'stage.dvc') is missing version info. \"\n                \"Cache for it will not be collected. \"\n                \"Use `dvc repro` to get your pipeline up to date.\\n\"\n                \"You can also use `dvc commit stage.dvc` to associate \"\n                \"existing 'path' with stage: 'stage.dvc'.\"\n            ),\n        ),\n    ],\n)\ndef test_get_used_cache(exists, expected_message, mocker, caplog):\n    stage = mocker.MagicMock()\n    mocker.patch.object(stage, \"__str__\", return_value=\"stage: 'stage.dvc'\")\n    mocker.patch.object(stage, \"addressing\", \"stage.dvc\")\n    mocker.patch.object(\n        stage.repo.tree.dvcignore,\n        \"check_ignore\",\n        return_value=_no_match(\"path\"),\n    )\n\n    output = BaseOutput(stage, \"path\")\n\n    mocker.patch.object(output, \"use_cache\", True)\n    mocker.patch.object(stage, \"is_repo_import\", False)\n    mocker.patch.object(\n        BaseOutput, \"exists\", new_callable=mocker.PropertyMock\n    ).return_value = exists\n\n    with caplog.at_level(logging.WARNING, logger=\"dvc\"):\n        assert isinstance(output.get_used_cache(), NamedCache)\n    assert first(caplog.messages) == expected_message", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_filecmp_test_remove_dir.assert_not_dpath_exists_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_filecmp_test_remove_dir.assert_not_dpath_exists_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_connection.py", "file_name": "test_connection.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 53, "span_ids": ["test_isfile", "test_isdir", "imports", "test_makedirs", "test_remove_dir", "test_exists"], "tokens": 361}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import filecmp\nimport os\nimport platform\nimport posixpath\nimport tempfile\n\nimport pytest\n\nfrom dvc.info import get_fs_type\nfrom dvc.system import System\nfrom dvc.tree.ssh.connection import SSHConnection\n\nhere = os.path.abspath(os.path.dirname(__file__))\n\nSRC_PATH_WITH_SPECIAL_CHARACTERS = \"Escape me [' , ']\"\nESCAPED_SRC_PATH_WITH_SPECIAL_CHARACTERS = \"'Escape me ['\\\"'\\\"' , '\\\"'\\\"']'\"\n\nDEST_PATH_WITH_SPECIAL_CHARACTERS = \"Escape me too [' , ']\"\nESCAPED_DEST_PATH_WITH_SPECIAL_CHARACTERS = (\n    \"'Escape me too ['\\\"'\\\"' , '\\\"'\\\"']'\"\n)\n\n\ndef test_isdir(ssh_connection):\n    assert ssh_connection.isdir(here)\n    assert not ssh_connection.isdir(__file__)\n\n\ndef test_exists(ssh_connection):\n    assert not ssh_connection.exists(\"/path/to/non/existent/file\")\n    assert ssh_connection.exists(__file__)\n\n\ndef test_isfile(ssh_connection):\n    assert ssh_connection.isfile(__file__)\n    assert not ssh_connection.isfile(here)\n\n\ndef test_makedirs(tmp_path, ssh_connection):\n    tmp = tmp_path.absolute().as_posix()\n    path = posixpath.join(tmp, \"dir\", \"subdir\")\n    ssh_connection.makedirs(path)\n    assert os.path.isdir(path)\n\n\ndef test_remove_dir(tmp_path, ssh_connection):\n    dpath = tmp_path / \"dir\"\n    dpath.mkdir()\n    (dpath / \"file\").write_text(\"file\")\n    (dpath / \"subdir\").mkdir()\n    (dpath / \"subdir\" / \"subfile\").write_text(\"subfile\")\n    ssh_connection.remove(dpath.absolute().as_posix())\n    assert not dpath.exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_walk_test_walk.assert_paths_expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_walk_test_walk.assert_paths_expected", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_connection.py", "file_name": "test_connection.py", "file_type": "text/x-python", "category": "test", "start_line": 47, "end_line": 84, "span_ids": ["test_walk"], "tokens": 238}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk(tmp_path, ssh_connection):\n    root_path = tmp_path\n    dir_path = root_path / \"dir\"\n    subdir_path = dir_path / \"subdir\"\n\n    dir_path.mkdir()\n    subdir_path.mkdir()\n\n    root_data_path = root_path / \"root_data\"\n    dir_data_path = dir_path / \"dir_data\"\n    subdir_data_path = subdir_path / \"subdir_data\"\n\n    with root_data_path.open(\"w+\") as fobj:\n        fobj.write(\"\")\n\n    with dir_data_path.open(\"w+\") as fobj:\n        fobj.write(\"\")\n\n    with subdir_data_path.open(\"w+\") as fobj:\n        fobj.write(\"\")\n\n    entries = [\n        dir_path,\n        subdir_path,\n        root_data_path,\n        dir_data_path,\n        subdir_data_path,\n    ]\n    expected = {entry.absolute().as_posix() for entry in entries}\n\n    paths = set()\n    for root, dirs, files in ssh_connection.walk(\n        root_path.absolute().as_posix()\n    ):\n        for entry in dirs + files:\n            paths.add(posixpath.join(root, entry))\n\n    assert paths == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_reflink_test_reflink.assert_not_System_is_hard": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_reflink_test_reflink.assert_not_System_is_hard", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_connection.py", "file_name": "test_connection.py", "file_type": "text/x-python", "category": "test", "start_line": 87, "end_line": 96, "span_ids": ["test_reflink"], "tokens": 109}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    get_fs_type(tempfile.gettempdir())[0] not in [\"xfs\", \"apfs\", \"btrfs\"],\n    reason=\"Reflinks only work in specified file systems\",\n)\ndef test_reflink(tmp_dir, ssh_connection):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    ssh_connection.reflink(\"foo\", \"link\")\n    assert filecmp.cmp(\"foo\", \"link\")\n    assert not System.is_symlink(\"link\")\n    assert not System.is_hardlink(\"link\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_hardlink_optimization_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_hardlink_optimization_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 227, "span_ids": ["test_hardlink_optimization"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_hardlink_optimization(dvc, tmp_dir, ssh):\n    tree = SSHTree(dvc, ssh.config)\n\n    from_info = tree.path_info / \"empty\"\n    to_info = tree.path_info / \"link\"\n\n    with tree.open(from_info, \"wb\"):\n        pass\n\n    if os.name == \"nt\":\n        link_path = \"c:\" + to_info.path.replace(\"/\", \"\\\\\")\n    else:\n        link_path = to_info.path\n\n    tree.hardlink(from_info, to_info)\n    assert not System.is_hardlink(link_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_gdrive.py_TestRemoteGDrive_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_gdrive.py_TestRemoteGDrive_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_gdrive.py", "file_name": "test_gdrive.py", "file_type": "text/x-python", "category": "test", "start_line": 12, "end_line": 38, "span_ids": ["TestRemoteGDrive", "TestRemoteGDrive.test_init", "TestRemoteGDrive.test_drive"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRemoteGDrive:\n    CONFIG = {\n        \"url\": \"gdrive://root/data\",\n        \"gdrive_client_id\": \"client\",\n        \"gdrive_client_secret\": \"secret\",\n    }\n\n    def test_init(self, dvc):\n        tree = GDriveTree(dvc, self.CONFIG)\n        assert str(tree.path_info) == self.CONFIG[\"url\"]\n\n    def test_drive(self, dvc):\n        tree = GDriveTree(dvc, self.CONFIG)\n        os.environ[\n            GDriveTree.GDRIVE_CREDENTIALS_DATA\n        ] = USER_CREDS_TOKEN_REFRESH_ERROR\n        with pytest.raises(GDriveAuthError):\n            assert tree._drive\n\n        os.environ[GDriveTree.GDRIVE_CREDENTIALS_DATA] = \"\"\n        tree = GDriveTree(dvc, self.CONFIG)\n        os.environ[\n            GDriveTree.GDRIVE_CREDENTIALS_DATA\n        ] = USER_CREDS_MISSED_KEY_ERROR\n        with pytest.raises(GDriveAuthError):\n            assert tree._drive", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_slow_link_detection.py_mock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_slow_link_detection.py_mock_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_slow_link_detection.py", "file_name": "test_slow_link_detection.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 48, "span_ids": ["timeout_immediately", "test_dont_warn_when_cache_type_is_set", "test_dont_warn_when_warning_is_disabled", "imports", "test_show_warning_once", "make_remote"], "tokens": 313}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import mock\nimport pytest\n\nimport dvc.remote.slow_link_detection\nfrom dvc.remote.slow_link_detection import slow_link_guard\n\n\n@pytest.fixture(autouse=True)\ndef timeout_immediately(monkeypatch):\n    monkeypatch.setattr(dvc.remote.slow_link_detection, \"timeout_seconds\", 0.0)\n\n\n@pytest.fixture\ndef make_remote():\n    def _make_remote(cache_type=None, should_warn=True):\n        remote = mock.Mock()\n        remote.repo.config = {\n            \"cache\": {\"type\": cache_type, \"slow_link_warning\": should_warn}\n        }\n        return remote\n\n    return _make_remote\n\n\ndef test_show_warning_once(caplog, make_remote):\n    remote = make_remote()\n    slow_link_guard(lambda x: None)(remote)\n    slow_link_guard(lambda x: None)(remote)\n\n    slow_link_detection = dvc.remote.slow_link_detection\n    message = slow_link_detection.message  # noqa, pylint: disable=no-member\n    assert len(caplog.records) == 1\n    assert caplog.records[0].message == message\n\n\ndef test_dont_warn_when_cache_type_is_set(caplog, make_remote):\n    remote = make_remote(cache_type=\"copy\")\n    slow_link_guard(lambda x: None)(remote)\n\n    assert len(caplog.records) == 0\n\n\ndef test_dont_warn_when_warning_is_disabled(caplog, make_remote):\n    remote = make_remote(should_warn=False)\n    slow_link_guard(lambda x: None)(remote)\n\n    assert len(caplog.records) == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_test_runtime_info_test_send.assert_not_report_file_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_test_runtime_info_test_send.assert_not_report_file_ex", "embedding": null, "metadata": {"file_path": "tests/unit/test_analytics.py", "file_name": "test_analytics.py", "file_type": "text/x-python", "category": "test", "start_line": 45, "end_line": 74, "span_ids": ["test_runtime_info", "test_send"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_runtime_info(tmp_global_dir):\n    schema = Schema(\n        {\n            \"dvc_version\": str,\n            \"is_binary\": bool,\n            \"scm_class\": Any(\"Git\", None),\n            \"user_id\": str,\n            \"system_info\": dict,\n        },\n        required=True,\n    )\n\n    assert schema(analytics._runtime_info())\n\n\n@mock.patch(\"requests.post\")\ndef test_send(mock_post, tmp_path):\n    import requests\n\n    url = \"https://analytics.dvc.org\"\n    report = {\"name\": \"dummy report\"}\n    report_file = tmp_path / \"report\"\n\n    report_file.write_text(json.dumps(report))\n    mock_post.side_effect = requests.exceptions.RequestException\n\n    analytics.send(str(report_file))\n    assert mock_post.called\n    assert mock_post.call_args.args[0] == url\n    assert not report_file.exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_test_is_enabled_test_is_enabled.assert_result_analytic": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_test_is_enabled_test_is_enabled.assert_result_analytic", "embedding": null, "metadata": {"file_path": "tests/unit/test_analytics.py", "file_name": "test_analytics.py", "file_type": "text/x-python", "category": "test", "start_line": 77, "end_line": 97, "span_ids": ["test_is_enabled"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config, result\",\n    [\n        ({}, True),\n        ({\"analytics\": \"false\"}, False),\n        ({\"analytics\": \"true\"}, True),\n        ({\"unknown\": \"broken\"}, True),\n        ({\"analytics\": \"false\", \"unknown\": \"broken\"}, False),\n    ],\n)\ndef test_is_enabled(dvc, config, result, monkeypatch, tmp_global_dir):\n    import configobj\n\n    conf = configobj.ConfigObj({\"core\": config})\n    conf.filename = dvc.config.files[\"repo\"]\n    conf.write()\n\n    # reset DVC_TEST env var, which affects `is_enabled()`\n    monkeypatch.delenv(\"DVC_TEST\")\n\n    assert result == analytics.is_enabled()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_test_system_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_test_system_info_", "embedding": null, "metadata": {"file_path": "tests/unit/test_analytics.py", "file_name": "test_analytics.py", "file_type": "text/x-python", "category": "test", "start_line": 100, "end_line": 135, "span_ids": ["test_system_info", "test_find_or_create_user_id"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_system_info():\n    schema = Schema({\"os\": Any(\"windows\", \"mac\", \"linux\")}, required=True)\n\n    system = platform.system()\n\n    if system == \"Windows\":\n        schema = schema.extend(\n            {\n                \"windows_version_build\": int,\n                \"windows_version_major\": int,\n                \"windows_version_minor\": int,\n                \"windows_version_service_pack\": str,\n            }\n        )\n\n    if system == \"Darwin\":\n        schema = schema.extend({\"mac_version\": str})\n\n    if system == \"Linux\":\n        schema = schema.extend(\n            {\n                \"linux_distro\": str,\n                \"linux_distro_like\": str,\n                \"linux_distro_version\": str,\n            }\n        )\n\n    assert schema(analytics._system_info())\n\n\ndef test_find_or_create_user_id(tmp_global_dir):\n    created = analytics._find_or_create_user_id()\n    found = analytics._find_or_create_user_id()\n\n    assert created == found", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_daemon.py_inspect_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_daemon.py_inspect_", "embedding": null, "metadata": {"file_path": "tests/unit/test_daemon.py", "file_name": "test_daemon.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 41, "span_ids": ["imports", "TestDaemon.test", "test_no_recursive_spawn", "TestDaemon"], "tokens": 280}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import inspect\nimport os\nfrom unittest import TestCase\n\nimport mock\n\nimport dvc.daemon as daemon\n\n\nclass TestDaemon(TestCase):\n    @mock.patch(\"dvc.daemon._spawn_posix\")\n    @mock.patch(\"dvc.daemon._spawn_windows\")\n    def test(self, mock_windows, mock_posix):\n        daemon.daemon([\"updater\"])\n\n        if os.name == \"nt\":\n            mock_posix.assert_not_called()\n            mock_windows.assert_called()\n            args = mock_windows.call_args[0]\n        else:\n            mock_windows.assert_not_called()\n            mock_posix.assert_called()\n            args = mock_posix.call_args[0]\n\n        env = args[1]\n        self.assertTrue(\"PYTHONPATH\" in env.keys())\n\n        file_path = os.path.abspath(inspect.stack()[0][1])\n        file_dir = os.path.dirname(file_path)\n        test_dir = os.path.dirname(file_dir)\n        dvc_dir = os.path.dirname(test_dir)\n        self.assertEqual(env[\"PYTHONPATH\"], dvc_dir)\n        self.assertEqual(env[daemon.DVC_DAEMON], \"1\")\n\n\ndef test_no_recursive_spawn():\n    with mock.patch.dict(os.environ, {daemon.DVC_DAEMON: \"1\"}):\n        with mock.patch(\"dvc.daemon._spawn\") as mock_spawn:\n            daemon.daemon([\"updater\"])\n            mock_spawn.assert_not_called()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dagascii.py_from_dvc_import_dagascii_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dagascii.py_from_dvc_import_dagascii_", "embedding": null, "metadata": {"file_path": "tests/unit/test_dagascii.py", "file_name": "test_dagascii.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 42, "span_ids": ["test_find_pager_returns_plain_pager_when_is_not_atty", "test_find_pager_uses_custom_pager_when_env_var_is_defined", "imports", "test_find_pager_returns_plain_pager_when_default_missing", "test_find_pager_uses_default_pager_when_found"], "tokens": 303}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc import dagascii\nfrom dvc.env import DVC_PAGER\n\n\ndef test_find_pager_uses_default_pager_when_found(mocker):\n    mocker.patch(\"sys.stdout.isatty\", return_value=True)\n    mocker.patch(\"os.system\", return_value=0)\n    m_make_pager = mocker.patch.object(dagascii, \"make_pager\")\n\n    dagascii.find_pager()\n\n    m_make_pager.assert_called_once_with(dagascii.DEFAULT_PAGER_FORMATTED)\n\n\ndef test_find_pager_returns_plain_pager_when_default_missing(mocker):\n    mocker.patch(\"sys.stdout.isatty\", return_value=True)\n    mocker.patch(\"os.system\", return_value=1)\n\n    pager = dagascii.find_pager()\n\n    assert pager.__name__ == \"plainpager\"\n\n\ndef test_find_pager_uses_custom_pager_when_env_var_is_defined(\n    mocker, monkeypatch\n):\n    mocker.patch(\"sys.stdout.isatty\", return_value=True)\n    m_make_pager = mocker.patch.object(dagascii, \"make_pager\")\n    monkeypatch.setenv(DVC_PAGER, dagascii.DEFAULT_PAGER)\n\n    dagascii.find_pager()\n\n    m_make_pager.assert_called_once_with(dagascii.DEFAULT_PAGER)\n\n\ndef test_find_pager_returns_plain_pager_when_is_not_atty(mocker):\n    mocker.patch(\"sys.stdout.isatty\", return_value=False)\n\n    pager = dagascii.find_pager()\n\n    assert pager.__name__ == \"plainpager\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_imports.py_subprocess_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_imports.py_subprocess_", "embedding": null, "metadata": {"file_path": "tests/unit/test_imports.py", "file_name": "test_imports.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["test_no_remote_imports", "imports"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import subprocess\n\n\ndef test_no_remote_imports():\n    remote_modules = {\n        \"boto3\",\n        \"botocore\",\n        \"google.cloud.storage\",\n        \"azure.storage.blob\",\n        \"oss2\",\n        \"pydrive2\",\n        \"paramiko\",\n        \"pyarrow\",\n    }\n\n    code = \"import dvc.main, sys; print(' '.join(sys.modules))\"\n    res = subprocess.run(\n        [\"python\", \"-c\", code], stdout=subprocess.PIPE, check=True\n    )\n    modules = res.stdout.decode().split()\n    assert not set(modules) & remote_modules", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_logging_dt.yield_2020_02_02_00_00_0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_logging_dt.yield_2020_02_02_00_00_0", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 28, "span_ids": ["imports", "dt"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport time\nimport traceback\nfrom datetime import datetime\n\nimport colorama\nimport pytest\n\nimport dvc.logger\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(\"dvc\")\nformatter = dvc.logger.ColorFormatter()\ncolors = {\n    \"blue\": colorama.Fore.BLUE,\n    \"green\": colorama.Fore.GREEN,\n    \"red\": colorama.Fore.RED,\n    \"yellow\": colorama.Fore.YELLOW,\n    \"nc\": colorama.Fore.RESET,\n}\n\n\n@pytest.fixture()\ndef dt(mocker):\n    mocker.patch(\n        \"time.time\", return_value=time.mktime(datetime(2020, 2, 2).timetuple())\n    )\n    yield \"2020-02-02 00:00:00,000\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter_TestColorFormatter.test_exception_with_description_and_message.with_caplog_at_level_logg.assert_expected_format": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter_TestColorFormatter.test_exception_with_description_and_message.with_caplog_at_level_logg.assert_expected_format", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 31, "end_line": 96, "span_ids": ["TestColorFormatter.test_exception_with_description_and_message", "TestColorFormatter.test_exception", "TestColorFormatter.test_exception_with_description_and_without_message", "TestColorFormatter.test_info", "TestColorFormatter.test_error", "TestColorFormatter.test_warning", "TestColorFormatter", "TestColorFormatter.test_debug"], "tokens": 464}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestColorFormatter:\n    # pylint: disable=broad-except\n    def test_debug(self, caplog, dt):\n        with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n            logger.debug(\"message\")\n\n            expected = \"{green}{datetime}{nc} {blue}DEBUG{nc}: message\".format(\n                **colors, datetime=dt\n            )\n\n            assert expected == formatter.format(caplog.records[0])\n\n    def test_info(self, caplog):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            logger.info(\"message\")\n\n            assert \"message\" == formatter.format(caplog.records[0])\n\n    def test_warning(self, caplog):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            logger.warning(\"message\")\n\n            expected = \"{yellow}WARNING{nc}: message\".format(**colors)\n\n            assert expected == formatter.format(caplog.records[0])\n\n    def test_error(self, caplog):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            logger.error(\"message\")\n\n            expected = \"{red}ERROR{nc}: message\".format(**colors)\n\n            assert expected == formatter.format(caplog.records[0])\n\n    def test_exception(self, caplog):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            try:\n                raise ValueError\n            except Exception:\n                logger.exception(\"message\")\n\n            expected = \"{red}ERROR{nc}: message\".format(**colors)\n\n            assert expected == formatter.format(caplog.records[0])\n\n    def test_exception_with_description_and_without_message(self, caplog):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            try:\n                raise Exception(\"description\")\n            except Exception:\n                logger.exception(\"\")\n\n            expected = \"{red}ERROR{nc}: description\".format(**colors)\n\n            assert expected == formatter.format(caplog.records[0])\n\n    def test_exception_with_description_and_message(self, caplog):\n        with caplog.at_level(logging.INFO, logger=\"dvc\"):\n            try:\n                raise Exception(\"description\")\n            except Exception:\n                logger.exception(\"message\")\n\n            expected = \"{red}ERROR{nc}: message - description\".format(**colors)\n\n            assert expected == formatter.format(caplog.records[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_exc_info_on_other_record_types_TestColorFormatter.test_exc_info_on_other_record_types.with_caplog_at_level_logg.assert_expected_format": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_exc_info_on_other_record_types_TestColorFormatter.test_exc_info_on_other_record_types.with_caplog_at_level_logg.assert_expected_format", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 122, "end_line": 143, "span_ids": ["TestColorFormatter.test_exc_info_on_other_record_types"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestColorFormatter:\n\n    def test_exc_info_on_other_record_types(self, caplog, dt):\n        with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n            try:\n                raise Exception(\"description\")\n            except Exception:\n                stack_trace = traceback.format_exc()\n                logger.debug(\"\", exc_info=True)\n\n            expected = (\n                \"{green}{datetime}{nc} \"\n                \"{blue}DEBUG{nc}: description\\n\"\n                \"{red}{line}{nc}\\n\"\n                \"{stack_trace}\"\n                \"{red}{line}{nc}\".format(\n                    line=\"-\" * 60,\n                    stack_trace=stack_trace,\n                    datetime=dt,\n                    **colors,\n                )\n            )\n\n            assert expected == formatter.format(caplog.records[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_tb_only_TestColorFormatter.test_tb_only.with_caplog_at_level_logg.assert_expected_format": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_tb_only_TestColorFormatter.test_tb_only.with_caplog_at_level_logg.assert_expected_format", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 145, "end_line": 166, "span_ids": ["TestColorFormatter.test_tb_only"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestColorFormatter:\n\n    def test_tb_only(self, caplog, dt):\n        with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n            try:\n                raise Exception(\"description\")\n            except Exception:\n                stack_trace = traceback.format_exc()\n                logger.exception(\"something\", extra={\"tb_only\": True})\n\n            expected = (\n                \"{green}{datetime}{nc} \"\n                \"{red}ERROR{nc}: something\\n\"\n                \"{red}{line}{nc}\\n\"\n                \"{stack_trace}\"\n                \"{red}{line}{nc}\".format(\n                    line=\"-\" * 60,\n                    stack_trace=stack_trace,\n                    **colors,\n                    datetime=dt,\n                )\n            )\n\n            assert expected == formatter.format(caplog.records[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_nested_exceptions_TestColorFormatter.test_nested_exceptions.with_caplog_at_level_logg.assert_dvc_exceptions_Dv": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_nested_exceptions_TestColorFormatter.test_nested_exceptions.with_caplog_at_level_logg.assert_dvc_exceptions_Dv", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 168, "end_line": 193, "span_ids": ["TestColorFormatter.test_nested_exceptions"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestColorFormatter:\n\n    def test_nested_exceptions(self, caplog, dt):\n        with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n            try:\n                raise Exception(\"first\")\n            except Exception as exc:\n                try:\n                    raise DvcException(\"second\") from exc\n                except DvcException:\n                    stack_trace = traceback.format_exc()\n                    logger.exception(\"message\")\n\n            expected = (\n                \"{green}{datetime}{nc} \"\n                \"{red}ERROR{nc}: message - second: first\\n\"\n                \"{red}{line}{nc}\\n\"\n                \"{stack_trace}\"\n                \"{red}{line}{nc}\".format(\n                    line=\"-\" * 60,\n                    stack_trace=stack_trace,\n                    **colors,\n                    datetime=dt,\n                )\n            )\n            assert expected == formatter.format(caplog.records[0])\n            assert \"Exception: first\" in stack_trace\n            assert \"dvc.exceptions.DvcException: second\" in stack_trace", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_progress_awareness_TestColorFormatter.test_progress_awareness.with_Tqdm_total_100_desc.None_1.assert_captured_out_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_TestColorFormatter.test_progress_awareness_TestColorFormatter.test_progress_awareness.with_Tqdm_total_100_desc.None_1.assert_captured_out_", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 195, "end_line": 223, "span_ids": ["TestColorFormatter.test_progress_awareness"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestColorFormatter:\n\n    def test_progress_awareness(self, mocker, capsys, caplog):\n        from dvc.progress import Tqdm\n\n        mocker.patch(\"sys.stdout.isatty\", return_value=True)\n        with Tqdm(total=100, desc=\"progress\") as pbar:\n            pbar.update()\n\n            # logging an invisible message should not break\n            # the progress bar output\n            with caplog.at_level(logging.INFO, logger=\"dvc\"):\n                debug_record = logging.LogRecord(\n                    name=\"dvc\",\n                    level=logging.DEBUG,\n                    pathname=__name__,\n                    lineno=1,\n                    msg=\"debug\",\n                    args=(),\n                    exc_info=None,\n                )\n\n                formatter.format(debug_record)\n                captured = capsys.readouterr()\n                assert captured.out == \"\"\n\n            #  when the message is actually visible\n            with caplog.at_level(logging.INFO, logger=\"dvc\"):\n                logger.info(\"some info\")\n                captured = capsys.readouterr()\n                assert captured.out == \"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_test_handlers_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_logger.py_test_handlers_", "embedding": null, "metadata": {"file_path": "tests/unit/test_logger.py", "file_name": "test_logger.py", "file_type": "text/x-python", "category": "test", "start_line": 224, "end_line": 250, "span_ids": ["test_logging_debug_with_datetime", "test_handlers", "test_info_with_debug_loglevel_shows_no_datetime"], "tokens": 175}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_handlers():\n    out, deb, vrb, err = logger.handlers\n\n    assert out.level == logging.INFO\n    assert deb.level == logging.DEBUG\n    assert vrb.level == logging.TRACE\n    assert err.level == logging.WARNING\n\n\ndef test_logging_debug_with_datetime(caplog, dt):\n    with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n        logger.warning(\"WARNING\")\n        logger.debug(\"DEBUG\")\n        logger.trace(\"TRACE\")\n        logger.error(\"ERROR\")\n\n        for record in caplog.records:\n            assert dt in formatter.format(record)\n            assert record.levelname == record.message\n\n\ndef test_info_with_debug_loglevel_shows_no_datetime(caplog, dt):\n    with caplog.at_level(logging.DEBUG, logger=\"dvc\"):\n        logger.info(\"message\")\n\n        assert \"message\" == formatter.format(caplog.records[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_path_info.py_copy_test_https_url_info_str.assert_u_fragment_fra": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_path_info.py_copy_test_https_url_info_str.assert_u_fragment_fra", "embedding": null, "metadata": {"file_path": "tests/unit/test_path_info.py", "file_name": "test_path_info.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 59, "span_ids": ["test_url_info_parent", "imports", "test_url_info_str", "test_url_info_eq", "test_https_url_info_str", "test_url_info_parents", "test_url_info_deepcopy"], "tokens": 471}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import copy\nimport os\nimport pathlib\n\nimport pytest\n\nfrom dvc.path_info import CloudURLInfo, HTTPURLInfo, PathInfo, URLInfo\n\nTEST_DEPTH = len(pathlib.Path(__file__).parents) + 1\n\n\n@pytest.mark.parametrize(\"cls\", [URLInfo, CloudURLInfo])\ndef test_url_info_str(cls):\n    u = cls(\"ssh://user@test.com:/test1/\")\n    assert u.url == \"ssh://user@test.com/test1/\"\n    assert str(u) == u.url\n\n\n@pytest.mark.parametrize(\"cls\", [URLInfo, CloudURLInfo])\ndef test_url_info_eq(cls):\n    u1 = cls(\"ssh://user@test.com:/test1/\")\n    u2 = cls(\"ssh://user@test.com/test1\")\n    assert u1 == u2\n\n\n@pytest.mark.parametrize(\"cls\", [URLInfo, CloudURLInfo])\ndef test_url_info_parent(cls):\n    u1 = cls(\"ssh://user@test.com:/test1/test2\")\n    p = u1.parent\n    u3 = cls(\"ssh://user@test.com/test1\")\n    assert u3 == p\n    assert str(p) == \"ssh://user@test.com/test1\"\n\n\n@pytest.mark.parametrize(\"cls\", [URLInfo, CloudURLInfo])\ndef test_url_info_parents(cls):\n    u1 = cls(\"ssh://user@test.com:/test1/test2/test3\")\n    assert list(u1.parents) == [\n        cls(\"ssh://user@test.com/test1/test2\"),\n        cls(\"ssh://user@test.com/test1\"),\n        cls(\"ssh://user@test.com/\"),\n    ]\n\n\n@pytest.mark.parametrize(\"cls\", [URLInfo, CloudURLInfo, HTTPURLInfo])\ndef test_url_info_deepcopy(cls):\n    u1 = cls(\"ssh://user@test.com:/test1/test2/test3\")\n    u2 = copy.deepcopy(u1)\n    assert u1 == u2\n\n\ndef test_https_url_info_str():\n    url = \"https://user@test.com/test1;p=par?q=quer#frag\"\n    u = HTTPURLInfo(url)\n    assert u.url == url\n    assert str(u) == u.url\n    assert u.params == \"p=par\"\n    assert u.query == \"q=quer\"\n    assert u.fragment == \"frag\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_rwlock.py_os_test_rwlock.None_2.with_pytest_raises_LockEr.with_rwlock_path_cmd2_.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_rwlock.py_os_test_rwlock.None_2.with_pytest_raises_LockEr.with_rwlock_path_cmd2_.pass", "embedding": null, "metadata": {"file_path": "tests/unit/test_rwlock.py", "file_name": "test_rwlock.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["imports", "test_rwlock"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.lock import LockError\nfrom dvc.path_info import PathInfo\nfrom dvc.rwlock import (\n    RWLockFileCorruptedError,\n    RWLockFileFormatError,\n    _edit_rwlock,\n    rwlock,\n)\n\n\ndef test_rwlock(tmp_path):\n    path = os.fspath(tmp_path)\n    foo = PathInfo(\"foo\")\n\n    with rwlock(path, \"cmd1\", [foo], []):\n        with pytest.raises(LockError):\n            with rwlock(path, \"cmd2\", [], [foo]):\n                pass\n\n    with rwlock(path, \"cmd1\", [], [foo]):\n        with pytest.raises(LockError):\n            with rwlock(path, \"cmd2\", [foo], []):\n                pass\n\n    with rwlock(path, \"cmd1\", [], [foo]):\n        with pytest.raises(LockError):\n            with rwlock(path, \"cmd2\", [], [foo]):\n                pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_rwlock.py_test_rwlock_reentrant_test_rwlock_reentrant.with_rwlock_path_cmd_.with__edit_rwlock_path_a.assert_lock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_rwlock.py_test_rwlock_reentrant_test_rwlock_reentrant.with_rwlock_path_cmd_.with__edit_rwlock_path_a.assert_lock_", "embedding": null, "metadata": {"file_path": "tests/unit/test_rwlock.py", "file_name": "test_rwlock.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 55, "span_ids": ["test_rwlock_reentrant"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_rwlock_reentrant(tmp_path):\n    path = os.fspath(tmp_path)\n    foo = PathInfo(\"foo\")\n\n    with rwlock(path, \"cmd1\", [], [foo]):\n        with rwlock(path, \"cmd1\", [], [foo]):\n            pass\n        with _edit_rwlock(path) as lock:\n            assert lock == {\n                \"read\": {},\n                \"write\": {\"foo\": {\"cmd\": \"cmd1\", \"pid\": os.getpid()}},\n            }\n\n    with rwlock(path, \"cmd\", [foo], []):\n        with rwlock(path, \"cmd\", [foo], []):\n            pass\n        with _edit_rwlock(path) as lock:\n            assert lock == {\n                \"read\": {\"foo\": [{\"cmd\": \"cmd\", \"pid\": os.getpid()}]},\n                \"write\": {},\n            }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_rwlock.py_test_rwlock_subdirs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_rwlock.py_test_rwlock_subdirs_", "embedding": null, "metadata": {"file_path": "tests/unit/test_rwlock.py", "file_name": "test_rwlock.py", "file_type": "text/x-python", "category": "test", "start_line": 58, "end_line": 96, "span_ids": ["test_rwlock_subdirs", "test_broken_rwlock"], "tokens": 320}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_rwlock_subdirs(tmp_path):\n    path = os.fspath(tmp_path)\n    foo = PathInfo(\"foo\")\n    subfoo = PathInfo(\"foo/subfoo\")\n\n    with rwlock(path, \"cmd1\", [foo], []):\n        with pytest.raises(LockError, match=r\"subfoo(.|\\n)*cmd1\"):\n            with rwlock(path, \"cmd2\", [], [subfoo]):\n                pass\n\n    with rwlock(path, \"cmd1\", [], [subfoo]):\n        with pytest.raises(LockError, match=r\"'foo'(.|\\n)*cmd1\"):\n            with rwlock(path, \"cmd2\", [foo], []):\n                pass\n\n    with rwlock(path, \"cmd1\", [], [subfoo]):\n        with pytest.raises(LockError):\n            with rwlock(path, \"cmd2\", [], [foo]):\n                pass\n\n    with rwlock(path, \"cmd1\", [subfoo], []):\n        with rwlock(path, \"cmd2\", [foo], []):\n            pass\n\n\ndef test_broken_rwlock(tmp_path):\n    dir_path = os.fspath(tmp_path)\n    path = tmp_path / \"rwlock\"\n\n    path.write_text('{\"broken\": \"format\"}', encoding=\"utf-8\")\n    with pytest.raises(RWLockFileFormatError):\n        with _edit_rwlock(dir_path):\n            pass\n\n    path.write_text(\"{broken json\", encoding=\"utf-8\")\n    with pytest.raises(RWLockFileCorruptedError):\n        with _edit_rwlock(dir_path):\n            pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_state.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_state.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/test_state.py", "file_name": "test_state.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 24, "span_ids": ["imports", "test_build_uri"], "tokens": 272}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.state import _build_sqlite_uri\n\n\n@pytest.mark.parametrize(\n    \"path, osname, result\",\n    [\n        (\"/abs/path\", \"posix\", \"file:///abs/path\"),\n        (\"C:\\\\abs\\\\path\", \"nt\", \"file:///C:/abs/path\"),\n        (\"/abs/p?ath\", \"posix\", \"file:///abs/p%3fath\"),\n        (\"C:\\\\abs\\\\p?ath\", \"nt\", \"file:///C:/abs/p%3fath\"),\n        (\"/abs/p#ath\", \"posix\", \"file:///abs/p%23ath\"),\n        (\"C:\\\\abs\\\\p#ath\", \"nt\", \"file:///C:/abs/p%23ath\"),\n        (\"/abs/path space\", \"posix\", \"file:///abs/path space\"),\n        (\"C:\\\\abs\\\\path space\", \"nt\", \"file:///C:/abs/path space\"),\n        (\"/abs/path%20encoded\", \"posix\", \"file:///abs/path%2520encoded\"),\n        (\"C:\\\\abs\\\\path%20encoded\", \"nt\", \"file:///C:/abs/path%2520encoded\"),\n    ],\n)\ndef test_build_uri(path, osname, result, mocker):\n    mocker.patch(\"os.name\", osname)\n    assert _build_sqlite_uri(path, {}) == result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_json_test_fetch.assert_info_version_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_json_test_fetch.assert_info_version_", "embedding": null, "metadata": {"file_path": "tests/unit/test_updater.py", "file_name": "test_updater.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 44, "span_ids": ["imports", "updater", "mock_tty", "test_fetch", "mock_env"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport logging\nimport os\nimport time\n\nimport mock\nimport pytest\n\nfrom dvc import __version__\nfrom dvc.updater import Updater\n\n\n@pytest.fixture(autouse=True)\ndef mock_env(monkeypatch):\n    monkeypatch.delenv(\"CI\", None)\n    monkeypatch.setenv(\"DVC_TEST\", \"False\")\n\n\n@pytest.fixture\ndef updater(tmp_path):\n    return Updater(tmp_path)\n\n\n@pytest.fixture\ndef mock_tty(mocker):\n    return mocker.patch(\"sys.stdout.isatty\", return_value=True)\n\n\n@mock.patch(\"requests.get\")\ndef test_fetch(mock_get, updater):\n    mock_get.return_value.status_code = 200\n    mock_get.return_value.json.return_value = {\"version\": __version__}\n\n    assert not os.path.exists(updater.updater_file)\n\n    updater.fetch(detach=False)\n\n    mock_get.assert_called_once_with(Updater.URL, timeout=Updater.TIMEOUT_GET)\n    assert os.path.isfile(updater.updater_file)\n\n    with open(updater.updater_file) as fobj:\n        info = json.load(fobj)\n\n    assert info[\"version\"] == __version__", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_version.py_subprocess_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_version.py_subprocess_", "embedding": null, "metadata": {"file_path": "tests/unit/test_version.py", "file_name": "test_version.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["imports", "test_is_release"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import subprocess\n\nimport mock\n\nimport dvc.version\n\n\ndef test_is_release():\n    with mock.patch.object(dvc.version.subprocess, \"check_output\") as m:\n        m.side_effect = subprocess.CalledProcessError(1, \"cmd\")\n        ret = dvc.version._is_release(None, dvc.version._BASE_VERSION)\n        assert ret is False\n\n        m.side_effect = None\n        m.return_value = dvc.version._BASE_VERSION.encode(\"ascii\")\n        ret = dvc.version._is_release(None, dvc.version._BASE_VERSION)\n        assert ret\n\n        m.return_value = b\"630d1741c2d5dd89a3176bd15b63121b905d35c9\"\n        ret = dvc.version._is_release(None, dvc.version._BASE_VERSION)\n        assert ret is False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_filecmp_from_tests_basic_env_impo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_filecmp_from_tests_basic_env_impo", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 26, "span_ids": ["imports"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import filecmp\nimport os\nfrom unittest import TestCase\n\nimport pytest\nfrom mock import patch\n\nimport dvc\nfrom dvc.path_info import PathInfo\nfrom dvc.system import System\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import (\n    BasePathNotInCheckedPathException,\n    contains_symlink_up_to,\n    copy_fobj_to_file,\n    copyfile,\n    get_inode,\n    get_mtime_and_size,\n    makedirs,\n    move,\n    path_isin,\n    remove,\n    walk_files,\n)\nfrom tests.basic_env import TestDir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_TestMtimeAndSize_TestMtimeAndSize.test.self_assertEqual_dir_size": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_TestMtimeAndSize_TestMtimeAndSize.test.self_assertEqual_dir_size", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 29, "end_line": 45, "span_ids": ["TestMtimeAndSize.test", "TestMtimeAndSize"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestMtimeAndSize(TestDir):\n    def test(self):\n        tree = LocalTree(None, {\"url\": self.root_dir}, use_dvcignore=True)\n        file_time, file_size = get_mtime_and_size(self.DATA, tree)\n        dir_time, dir_size = get_mtime_and_size(self.DATA_DIR, tree)\n\n        actual_file_size = os.path.getsize(self.DATA)\n        actual_dir_size = os.path.getsize(self.DATA) + os.path.getsize(\n            self.DATA_SUB\n        )\n\n        self.assertIs(type(file_time), str)\n        self.assertIs(type(file_size), str)\n        self.assertEqual(file_size, str(actual_file_size))\n        self.assertIs(type(dir_time), str)\n        self.assertIs(type(dir_size), str)\n        self.assertEqual(dir_size, str(actual_dir_size))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_TestContainsLink.test_should_return_false_when_base_path_is_symlink_TestContainsLink.test_path_object_and_str_are_valid_arg_types.self_assertFalse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_TestContainsLink.test_should_return_false_when_base_path_is_symlink_TestContainsLink.test_path_object_and_str_are_valid_arg_types.self_assertFalse_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 72, "end_line": 93, "span_ids": ["TestContainsLink.test_should_return_false_when_base_path_is_symlink", "TestContainsLink.test_path_object_and_str_are_valid_arg_types"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestContainsLink(TestCase):\n\n    @patch.object(System, \"is_symlink\", return_value=True)\n    def test_should_return_false_when_base_path_is_symlink(self, _):\n        base_path = \"foo\"\n        target_path = os.path.join(base_path, \"bar\")\n\n        def base_path_is_symlink(path):\n            if path == base_path:\n                return True\n            return False\n\n        with patch.object(\n            System, \"is_symlink\", side_effect=base_path_is_symlink\n        ):\n            self.assertFalse(contains_symlink_up_to(target_path, base_path))\n\n    def test_path_object_and_str_are_valid_arg_types(self):\n        base_path = \"foo\"\n        target_path = os.path.join(base_path, \"bar\")\n        self.assertFalse(contains_symlink_up_to(target_path, base_path))\n        self.assertFalse(\n            contains_symlink_up_to(PathInfo(target_path), PathInfo(base_path))\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_should_call_recursive_on_no_condition_matched_test_should_call_recursive_on_no_condition_matched.assert_contains_symlink_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_should_call_recursive_on_no_condition_matched_test_should_call_recursive_on_no_condition_matched.assert_contains_symlink_s", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 96, "end_line": 105, "span_ids": ["test_should_call_recursive_on_no_condition_matched"], "tokens": 105}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_should_call_recursive_on_no_condition_matched(mocker):\n    mocker.patch.object(System, \"is_symlink\", return_value=False)\n\n    contains_symlink_spy = mocker.spy(dvc.utils.fs, \"contains_symlink_up_to\")\n\n    # call from full path to match contains_symlink_spy patch path\n    assert not dvc.utils.fs.contains_symlink_up_to(\n        os.path.join(\"foo\", \"path\"), \"foo\"\n    )\n    assert contains_symlink_spy.mock.call_count == 2", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_relpath_windows_different_drives_test_get_inode.assert_get_inode_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_relpath_windows_different_drives_test_get_inode.assert_get_inode_foo_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 108, "end_line": 123, "span_ids": ["test_relpath_windows_different_drives", "test_get_inode"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(os.name != \"nt\", reason=\"Windows specific\")\ndef test_relpath_windows_different_drives():\n    path1 = os.path.join(\"A:\", os.sep, \"some\", \"path\")\n    path2 = os.path.join(\"B:\", os.sep, \"other\", \"path\")\n    assert relpath(path1, path2) == path1\n\n    info1, info2 = PathInfo(path1), PathInfo(path2)\n    rel_info = relpath(info1, info2)\n    assert isinstance(rel_info, str)\n    assert rel_info == path1\n\n\ndef test_get_inode(tmp_dir):\n    tmp_dir.gen(\"foo\", \"foo content\")\n\n    assert get_inode(\"foo\") == get_inode(PathInfo(\"foo\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_path_object_and_str_are_valid_types_get_mtime_and_size_test_path_object_and_str_are_valid_types_get_mtime_and_size.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_path_object_and_str_are_valid_types_get_mtime_and_size_test_path_object_and_str_are_valid_types_get_mtime_and_size.None_7", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 128, "end_line": 142, "span_ids": ["test_path_object_and_str_are_valid_types_get_mtime_and_size"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_path_object_and_str_are_valid_types_get_mtime_and_size(tmp_dir):\n    tmp_dir.gen(\n        {\"dir\": {\"dir_file\": \"dir file content\"}, \"file\": \"file_content\"}\n    )\n    tree = LocalTree(None, {\"url\": os.fspath(tmp_dir)}, use_dvcignore=True)\n\n    time, size = get_mtime_and_size(\"dir\", tree)\n    object_time, object_size = get_mtime_and_size(PathInfo(\"dir\"), tree)\n    assert time == object_time\n    assert size == object_size\n\n    time, size = get_mtime_and_size(\"file\", tree)\n    object_time, object_size = get_mtime_and_size(PathInfo(\"file\"), tree)\n    assert time == object_time\n    assert size == object_size", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_move_test_move.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_move_test_move.None_5", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 146, "end_line": 163, "span_ids": ["test_move"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_move(tmp_dir):\n    tmp_dir.gen({\"foo\": \"foo content\", \"bar\": \"bar content\"})\n    src = \"foo\"\n    src_info = PathInfo(\"bar\")\n    dest = os.path.join(\"some\", \"directory\")\n    dest_info = PathInfo(os.path.join(\"some\", \"path-like\", \"directory\"))\n\n    os.makedirs(dest)\n    assert len(os.listdir(dest)) == 0\n    move(src, dest)\n    assert not os.path.isfile(src)\n    assert len(os.listdir(dest)) == 1\n\n    os.makedirs(dest_info)\n    assert len(os.listdir(dest_info)) == 0\n    move(src_info, dest_info)\n    assert not os.path.isfile(src_info)\n    assert len(os.listdir(dest_info)) == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_remove_test_makedirs.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_remove_test_makedirs.None_1", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 166, "end_line": 228, "span_ids": ["test_path_isin_accepts_pathinfo", "test_path_isin_positive", "test_path_isin_on_common_substring_path", "test_makedirs", "test_path_isin_on_same_path", "test_path_isin_with_absolute_path", "test_remove"], "tokens": 456}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove(tmp_dir):\n    tmp_dir.gen({\"foo\": \"foo content\", \"bar\": \"bar content\"})\n    path = \"foo\"\n    path_info = PathInfo(\"bar\")\n\n    remove(path)\n    assert not os.path.isfile(path)\n\n    remove(path_info)\n    assert not os.path.isfile(path_info)\n\n\ndef test_path_isin_positive():\n    child = os.path.join(\"path\", \"to\", \"folder\")\n\n    assert path_isin(child, os.path.join(\"path\", \"to\", \"\"))\n    assert path_isin(child, os.path.join(\"path\", \"to\"))\n    assert path_isin(child, os.path.join(\"path\", \"\"))\n    assert path_isin(child, os.path.join(\"path\"))\n\n\ndef test_path_isin_on_same_path():\n    path = os.path.join(\"path\", \"to\", \"folder\")\n    path_with_sep = os.path.join(path, \"\")\n\n    assert not path_isin(path, path)\n    assert not path_isin(path, path_with_sep)\n    assert not path_isin(path_with_sep, path)\n    assert not path_isin(path_with_sep, path_with_sep)\n\n\ndef test_path_isin_on_common_substring_path():\n    path1 = os.path.join(\"path\", \"to\", \"folder1\")\n    path2 = os.path.join(\"path\", \"to\", \"folder\")\n\n    assert not path_isin(path1, path2)\n\n\ndef test_path_isin_accepts_pathinfo():\n    child = os.path.join(\"path\", \"to\", \"folder\")\n    parent = PathInfo(child) / \"..\"\n\n    assert path_isin(child, parent)\n    # pylint: disable=arguments-out-of-order\n    assert not path_isin(parent, child)\n\n\ndef test_path_isin_with_absolute_path():\n    parent = os.path.abspath(\"path\")\n    child = os.path.join(parent, \"to\", \"folder\")\n\n    assert path_isin(child, parent)\n\n\ndef test_makedirs(tmp_dir):\n    path = os.path.join(tmp_dir, \"directory\")\n    path_info = PathInfo(os.path.join(tmp_dir, \"another\", \"directory\"))\n\n    makedirs(path)\n    assert os.path.isdir(path)\n\n    makedirs(path_info)\n    assert os.path.isdir(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_copyfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_fs.py_test_copyfile_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_fs.py", "file_name": "test_fs.py", "file_type": "text/x-python", "category": "test", "start_line": 230, "end_line": 276, "span_ids": ["test_copyfile", "test_copy_fobj_to_file", "test_walk_files"], "tokens": 301}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"path\", [\"file\", \"dir\"])\ndef test_copyfile(path, tmp_dir):\n    tmp_dir.gen(\n        {\n            \"foo\": \"foo content\",\n            \"bar\": \"bar content\",\n            \"file\": \"file content\",\n            \"dir\": {},\n        }\n    )\n    src = \"foo\"\n    dest = path\n    src_info = PathInfo(\"bar\")\n    dest_info = PathInfo(path)\n\n    copyfile(src, dest)\n    if os.path.isdir(dest):\n        assert filecmp.cmp(\n            src, os.path.join(dest, os.path.basename(src)), shallow=False\n        )\n    else:\n        assert filecmp.cmp(src, dest, shallow=False)\n\n    copyfile(src_info, dest_info)\n    if os.path.isdir(dest_info):\n        assert filecmp.cmp(\n            src_info,\n            os.path.join(dest_info, os.path.basename(src_info)),\n            shallow=False,\n        )\n    else:\n        assert filecmp.cmp(src_info, dest_info, shallow=False)\n\n\ndef test_copy_fobj_to_file(tmp_dir):\n    tmp_dir.gen({\"foo\": \"foo content\"})\n    src = tmp_dir / \"foo\"\n    dest = \"path\"\n\n    with open(src, \"rb\") as fobj:\n        copy_fobj_to_file(fobj, dest)\n    assert filecmp.cmp(src, dest)\n\n\ndef test_walk_files(tmp_dir):\n    assert list(walk_files(\".\")) == list(walk_files(tmp_dir))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_to_chunks_should_raise_test_to_chunks_num_chunks.assert_result_expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_to_chunks_should_raise_test_to_chunks_num_chunks.assert_result_expected", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 24, "end_line": 38, "span_ids": ["test_to_chunks_num_chunks", "test_to_chunks_should_raise"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"num_chunks, chunk_size\", [(1, 2), (None, None)])\ndef test_to_chunks_should_raise(num_chunks, chunk_size):\n    list_to_chunk = [1, 2, 3]\n    with pytest.raises(ValueError):\n        to_chunks(list_to_chunk, num_chunks, chunk_size)\n\n\n@pytest.mark.parametrize(\n    \"num_chunks, expected_chunks\",\n    [(4, [[1], [2], [3], [4]]), (3, [[1, 2], [3, 4]]), (2, [[1, 2], [3, 4]])],\n)\ndef test_to_chunks_num_chunks(num_chunks, expected_chunks):\n    list_to_chunk = [1, 2, 3, 4]\n    result = to_chunks(list_to_chunk, num_chunks=num_chunks)\n    assert result == expected_chunks", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_fix_env_pyenv_test_fix_env_pyenv.assert_fix_env_env_PATH": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_fix_env_pyenv_test_fix_env_pyenv.assert_fix_env_env_PATH", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 78, "span_ids": ["test_fix_env_pyenv"], "tokens": 293}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(os.name == \"nt\", reason=\"pyenv-win is not supported\")\n@pytest.mark.parametrize(\n    \"path, orig\",\n    [\n        (\n            (\n                \"/pyenv/bin:/pyenv/libexec:/pyenv/plugins/plugin:\"\n                \"/orig/path1:/orig/path2\"\n            ),\n            \"/orig/path1:/orig/path2\",\n        ),\n        (\n            \"/pyenv/bin:/pyenv/libexec:/orig/path1:/orig/path2\",\n            \"/orig/path1:/orig/path2\",\n        ),\n        (\n            (\n                \"/pyenv/bin:/some/libexec:/pyenv/plugins/plugin:\"\n                \"/orig/path1:/orig/path2\"\n            ),\n            \"/orig/path1:/orig/path2\",\n        ),\n        (\"/orig/path1:/orig/path2\", \"/orig/path1:/orig/path2\"),\n        (\n            \"/orig/path1:/orig/path2:/pyenv/bin:/pyenv/libexec\",\n            \"/orig/path1:/orig/path2:/pyenv/bin:/pyenv/libexec\",\n        ),\n    ],\n)\ndef test_fix_env_pyenv(path, orig):\n    env = {\n        \"PATH\": path,\n        \"PYENV_ROOT\": \"/pyenv\",\n        \"PYENV_VERSION\": \"3.7.2\",\n        \"PYENV_DIR\": \"/some/dir\",\n        \"PYENV_HOOK_PATH\": \"/some/hook/path\",\n    }\n    assert fix_env(env)[\"PATH\"] == orig", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_file_md5_test_relpath.assert_relpath_path_r": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_file_md5_test_relpath.assert_relpath_path_r", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 81, "end_line": 106, "span_ids": ["test_file_md5", "test_relpath", "test_tmp_fname"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_file_md5(tmp_dir):\n    tmp_dir.gen(\"foo\", \"foo content\")\n\n    assert file_md5(\"foo\") == file_md5(PathInfo(\"foo\"))\n\n\ndef test_tmp_fname():\n    file_path = os.path.join(\"path\", \"to\", \"file\")\n    file_path_info = PathInfo(file_path)\n\n    def pattern(path):\n        return r\"^\" + re.escape(path) + r\"\\.[a-z0-9]{22}\\.tmp$\"\n\n    assert re.search(pattern(file_path), tmp_fname(file_path), re.IGNORECASE)\n    assert re.search(\n        pattern(file_path_info.fspath),\n        tmp_fname(file_path_info),\n        re.IGNORECASE,\n    )\n\n\ndef test_relpath():\n    path = \"path\"\n    path_info = PathInfo(path)\n\n    assert relpath(path) == relpath(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pull_git_imports_test_pull_git_imports.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pull_git_imports_test_pull_git_imports.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 262, "end_line": 287, "span_ids": ["test_pull_git_imports"], "tokens": 266}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@flaky(max_runs=3, min_passes=1)\n@pytest.mark.parametrize(\n    \"erepo\", [pytest.lazy_fixture(\"git_dir\"), pytest.lazy_fixture(\"erepo_dir\")]\n)\ndef test_pull_git_imports(tmp_dir, dvc, scm, erepo):\n    with erepo.chdir():\n        erepo.scm_gen({\"dir\": {\"bar\": \"bar\"}}, commit=\"second\")\n        erepo.scm_gen(\"foo\", \"foo\", commit=\"first\")\n\n    dvc.imp(os.fspath(erepo), \"foo\")\n    dvc.imp(os.fspath(erepo), \"dir\", out=\"new_dir\", rev=\"HEAD~\")\n\n    assert dvc.pull()[\"fetched\"] == 0\n\n    for item in [\"foo\", \"new_dir\", dvc.cache.local.cache_dir]:\n        remove(item)\n    os.makedirs(dvc.cache.local.cache_dir, exist_ok=True)\n    clean_repos()\n\n    assert dvc.pull(force=True)[\"fetched\"] == 2\n\n    assert (tmp_dir / \"foo\").exists()\n    assert (tmp_dir / \"foo\").read_text() == \"foo\"\n\n    assert (tmp_dir / \"new_dir\").exists()\n    assert (tmp_dir / \"new_dir\" / \"bar\").read_text() == \"bar\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_URLInfo._fill_parts_URLInfo._fill_parts.if_isinstance_path__URLP.else_.self._spath.path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_URLInfo._fill_parts_URLInfo._fill_parts.if_isinstance_path__URLP.else_.self._spath.path", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 133, "end_line": 146, "span_ids": ["URLInfo._fill_parts"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class URLInfo(_BasePath):\n\n    def _fill_parts(self, scheme, host, user, port, path):\n        assert scheme != \"remote\"\n        assert isinstance(path, (str, bytes, _URLPathInfo))\n\n        self.scheme, self.host, self.user = scheme, host, user\n        self.port = int(port) if port else self.DEFAULT_PORTS.get(self.scheme)\n\n        if isinstance(path, _URLPathInfo):\n            self._spath = str(path)\n            self._path = path\n        else:\n            if path and path[0] != \"/\":\n                path = \"/\" + path\n            self._spath = path", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/progress.py_Tqdm.wrap_fn_Tqdm.close.super_close_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/progress.py_Tqdm.wrap_fn_Tqdm.close.super_close_", "embedding": null, "metadata": {"file_path": "dvc/progress.py", "file_name": "progress.py", "file_type": "text/x-python", "category": "implementation", "start_line": 117, "end_line": 138, "span_ids": ["Tqdm.wrap_fn", "Tqdm.close"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Tqdm(tqdm):\n\n    def wrap_fn(self, fn, callback=None):\n        \"\"\"\n        Returns a wrapped `fn` which calls `callback()` on each call.\n        `callback` is `self.update` by default.\n        \"\"\"\n        if callback is None:\n            callback = self.update\n\n        def wrapped(*args, **kwargs):\n            res = fn(*args, **kwargs)\n            callback()\n            return res\n\n        return wrapped\n\n    def close(self):\n        self.postfix[\"info\"] = \"\"\n        # remove ETA (either unknown or zero); remove completed bar\n        self.bar_format = self.bar_format.replace(\"<{remaining}\", \"\").replace(\n            \"|{bar:10}|\", \" \"\n        )\n        super().close()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/progress.py_Tqdm.format_dict_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/progress.py_Tqdm.format_dict_", "embedding": null, "metadata": {"file_path": "dvc/progress.py", "file_name": "progress.py", "file_type": "text/x-python", "category": "implementation", "start_line": 140, "end_line": 157, "span_ids": ["Tqdm.format_dict"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Tqdm(tqdm):\n\n    @property\n    def format_dict(self):\n        \"\"\"inject `ncols_desc` to fill the display width (`ncols`)\"\"\"\n        d = super().format_dict\n        ncols = d[\"ncols\"] or 80\n        # assumes `bar_format` has max one of (\"ncols_desc\" & \"ncols_info\")\n        ncols_left = (\n            ncols - len(self.format_meter(ncols_desc=1, ncols_info=1, **d)) + 1\n        )\n        ncols_left = max(ncols_left, 0)\n        if ncols_left:\n            d[\"ncols_desc\"] = d[\"ncols_info\"] = ncols_left\n        else:\n            # work-around for zero-width description\n            d[\"ncols_desc\"] = d[\"ncols_info\"] = 1\n            d[\"prefix\"] = \"\"\n        return d", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_local.py_test_protect_ignore_errors_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_local.py_test_protect_ignore_errors_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_local.py", "file_name": "test_local.py", "file_type": "text/x-python", "category": "test", "start_line": 68, "end_line": 93, "span_ids": ["test_protect_ignore_erofs", "test_protect_ignore_errors"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"err\", [errno.EPERM, errno.EACCES])\ndef test_protect_ignore_errors(tmp_dir, mocker, err):\n    tmp_dir.gen(\"foo\", \"foo\")\n    foo = PathInfo(\"foo\")\n    tree = LocalTree(None, {})\n\n    tree.protect(foo)\n\n    mock_chmod = mocker.patch(\n        \"os.chmod\", side_effect=OSError(err, \"something\")\n    )\n    tree.protect(foo)\n    assert mock_chmod.called\n\n\ndef test_protect_ignore_erofs(tmp_dir, mocker):\n    tmp_dir.gen(\"foo\", \"foo\")\n    foo = PathInfo(\"foo\")\n    tree = LocalTree(None, {})\n\n    mock_chmod = mocker.patch(\n        \"os.chmod\", side_effect=OSError(errno.EROFS, \"read-only fs\")\n    )\n    tree.protect(foo)\n    assert mock_chmod.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote.py_test_makedirs_not_create_for_top_level_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote.py_test_makedirs_not_create_for_top_level_path_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 34, "end_line": 44, "span_ids": ["test_makedirs_not_create_for_top_level_path"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"tree_cls\", [GSTree, S3Tree])\ndef test_makedirs_not_create_for_top_level_path(tree_cls, dvc, mocker):\n    url = f\"{tree_cls.scheme}://bucket/\"\n    tree = tree_cls(dvc, {\"url\": url})\n    mocked_client = mocker.PropertyMock()\n    # we use remote clients with same name as scheme to interact with remote\n    mocker.patch.object(tree_cls, tree.scheme, mocked_client)\n\n    tree.makedirs(tree.path_info)\n    assert not mocked_client.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/__init__.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/__init__.py__", "embedding": null, "metadata": {"file_path": "dvc/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 10, "span_ids": ["docstring"], "tokens": 42}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"\nDVC\n----\nMake your data science projects reproducible and shareable.\n\"\"\"\nimport dvc.logger\nfrom dvc.version import __version__  # noqa: F401\n\ndvc.logger.setup()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py_is_enabled_send.os_remove_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/analytics.py_is_enabled_send.os_remove_path_", "embedding": null, "metadata": {"file_path": "dvc/analytics.py", "file_name": "analytics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 52, "end_line": 85, "span_ids": ["send", "is_enabled"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def is_enabled():\n    if env2bool(\"DVC_TEST\"):\n        return False\n\n    enabled = to_bool(\n        Config(validate=False).get(\"core\", {}).get(\"analytics\", \"true\")\n    )\n    logger.debug(\"Analytics is {}abled.\".format(\"en\" if enabled else \"dis\"))\n\n    return enabled\n\n\ndef send(path):\n    \"\"\"\n    Side effect: Removes the report after sending it.\n\n    The report is generated and stored in a temporary file, see:\n    `collect_and_send_report`. Sending happens on another process,\n    thus, the need of removing such file afterwards.\n    \"\"\"\n    url = \"https://analytics.dvc.org\"\n    headers = {\"content-type\": \"application/json\"}\n\n    with open(path) as fobj:\n        report = json.load(fobj)\n\n    report.update(_runtime_info())\n\n    try:\n        requests.post(url, json=report, headers=headers, timeout=5)\n    except requests.exceptions.RequestException:\n        logger.debug(\"failed to send analytics report\", exc_info=True)\n\n    os.remove(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/params.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/params.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/params.py", "file_name": "params.py", "file_type": "text/x-python", "category": "implementation", "start_line": 61, "end_line": 129, "span_ids": ["add_parser"], "tokens": 460}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    PARAMS_HELP = \"Commands to display params.\"\n\n    params_parser = subparsers.add_parser(\n        \"params\",\n        parents=[parent_parser],\n        description=append_doc_link(PARAMS_HELP, \"params\"),\n        help=PARAMS_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n\n    params_subparsers = params_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc params CMD --help` to display command-specific help.\",\n    )\n\n    fix_subparsers(params_subparsers)\n\n    PARAMS_DIFF_HELP = (\n        \"Show changes in params between commits in the DVC repository, or \"\n        \"between a commit and the workspace.\"\n    )\n    params_diff_parser = params_subparsers.add_parser(\n        \"diff\",\n        parents=[parent_parser],\n        description=append_doc_link(PARAMS_DIFF_HELP, \"params/diff\"),\n        help=PARAMS_DIFF_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    params_diff_parser.add_argument(\n        \"a_rev\", nargs=\"?\", help=\"Old Git commit to compare (defaults to HEAD)\"\n    )\n    params_diff_parser.add_argument(\n        \"b_rev\",\n        nargs=\"?\",\n        help=(\"New Git commit to compare (defaults to the current workspace)\"),\n    )\n    params_diff_parser.add_argument(\n        \"--targets\",\n        nargs=\"*\",\n        help=\"Limit command scope to these params files.\",\n        metavar=\"<path>\",\n    ).complete = completion.FILE\n    params_diff_parser.add_argument(\n        \"--all\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show unchanged params as well.\",\n    )\n    params_diff_parser.add_argument(\n        \"--show-json\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show output in JSON format.\",\n    )\n    params_diff_parser.add_argument(\n        \"--show-md\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show tabulated output in the Markdown format (GFM).\",\n    )\n    params_diff_parser.add_argument(\n        \"--no-path\",\n        action=\"store_true\",\n        default=False,\n        help=\"Don't show params path.\",\n    )\n    params_diff_parser.set_defaults(func=CmdParamsDiff)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/__init__.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/__init__.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/params/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 14, "span_ids": ["Params.diff", "Params.__init__", "Params.show", "Params"], "tokens": 78}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Params:\n    def __init__(self, repo):\n        self.repo = repo\n\n    def show(self, *args, **kwargs):\n        from .show import show\n\n        return show(self.repo, *args, **kwargs)\n\n    def diff(self, *args, **kwargs):\n        from .diff import diff\n\n        return diff(self.repo, *args, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/show.py_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/show.py_show_", "embedding": null, "metadata": {"file_path": "dvc/repo/params/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 78, "end_line": 109, "span_ids": ["show"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\ndef show(repo, revs=None, targets=None):\n    res = {}\n\n    for branch in repo.brancher(revs=revs):\n        configs = _collect_configs(repo, branch, targets)\n        params = _read_params(repo, configs, branch)\n        vars_params = _collect_vars(repo, params)\n\n        # NOTE: only those that are not added as a ParamDependency are included\n        # so we don't need to recursively merge them yet.\n        params.update(vars_params)\n\n        if params:\n            res[branch] = params\n\n    if not res:\n        raise NoParamsError(\"no parameter configs files in this repository\")\n\n    # Hide workspace params if they are the same as in the active branch\n    try:\n        active_branch = repo.scm.active_branch()\n    except (TypeError, SCMError):\n        # TypeError - detached head\n        # SCMError - no repo case\n        pass\n    else:\n        if res.get(\"workspace\") == res.get(active_branch):\n            res.pop(\"workspace\", None)\n\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_new_test_diff_deleted_config.assert_dvc_params_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_new_test_diff_deleted_config.assert_dvc_params_diff_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 73, "span_ids": ["test_diff_new", "test_diff_deleted_config", "test_diff_deleted"], "tokens": 278}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_new(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n\n    assert dvc.params.diff() == {\n        \"params.yaml\": {\"foo\": {\"old\": None, \"new\": \"bar\"}}\n    }\n\n\ndef test_diff_deleted(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"bar\")\n\n    (tmp_dir / \"params.yaml\").unlink()\n\n    assert dvc.params.diff() == {\n        \"params.yaml\": {\"foo\": {\"old\": \"bar\", \"new\": None}}\n    }\n\n\ndef test_diff_deleted_config(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"bar\")\n\n    (tmp_dir / \"params.yaml\").unlink()\n\n    assert dvc.params.diff() == {\n        \"params.yaml\": {\"foo\": {\"old\": \"bar\", \"new\": None}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_list_test_diff_list.assert_dvc_params_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_list_test_diff_list.assert_dvc_params_diff_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 76, "end_line": 88, "span_ids": ["test_diff_list"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_list(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo:\\n- bar\\n- baz\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"foo\")\n\n    tmp_dir.gen(\"params.yaml\", \"foo:\\n- bar\\n- baz\\n- qux\")\n\n    assert dvc.params.diff() == {\n        \"params.yaml\": {\n            \"foo\": {\"old\": \"['bar', 'baz']\", \"new\": \"['bar', 'baz', 'qux']\"}\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_data_sync.py_from_dvc_cli_import_parse_test_fetch.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_data_sync.py_from_dvc_cli_import_parse_test_fetch.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_data_sync.py", "file_name": "test_data_sync.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["imports", "test_fetch"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.data_sync import CmdDataFetch, CmdDataPull, CmdDataPush\n\n\ndef test_fetch(mocker):\n    cli_args = parse_args(\n        [\n            \"fetch\",\n            \"target1\",\n            \"target2\",\n            \"--jobs\",\n            \"2\",\n            \"--remote\",\n            \"remote\",\n            \"--all-branches\",\n            \"--all-tags\",\n            \"--all-commits\",\n            \"--with-deps\",\n            \"--recursive\",\n            \"--run-cache\",\n        ]\n    )\n    assert cli_args.func == CmdDataFetch\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"fetch\", autospec=True, return_value=0)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        targets=[\"target1\", \"target2\"],\n        jobs=2,\n        remote=\"remote\",\n        all_branches=True,\n        all_tags=True,\n        all_commits=True,\n        with_deps=True,\n        recursive=True,\n        run_cache=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_data_sync.py_test_pull_test_pull.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_data_sync.py_test_pull_test_pull.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_data_sync.py", "file_name": "test_data_sync.py", "file_type": "text/x-python", "category": "test", "start_line": 43, "end_line": 80, "span_ids": ["test_pull"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull(mocker):\n    cli_args = parse_args(\n        [\n            \"pull\",\n            \"target1\",\n            \"target2\",\n            \"--jobs\",\n            \"2\",\n            \"--remote\",\n            \"remote\",\n            \"--all-branches\",\n            \"--all-tags\",\n            \"--all-commits\",\n            \"--with-deps\",\n            \"--force\",\n            \"--recursive\",\n            \"--run-cache\",\n        ]\n    )\n    assert cli_args.func == CmdDataPull\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"pull\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        targets=[\"target1\", \"target2\"],\n        jobs=2,\n        remote=\"remote\",\n        all_branches=True,\n        all_tags=True,\n        all_commits=True,\n        with_deps=True,\n        force=True,\n        recursive=True,\n        run_cache=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_data_sync.py_test_push_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_data_sync.py_test_push_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_data_sync.py", "file_name": "test_data_sync.py", "file_type": "text/x-python", "category": "test", "start_line": 83, "end_line": 121, "span_ids": ["test_push"], "tokens": 198}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push(mocker):\n    cli_args = parse_args(\n        [\n            \"push\",\n            \"target1\",\n            \"target2\",\n            \"--jobs\",\n            \"2\",\n            \"--remote\",\n            \"remote\",\n            \"--all-branches\",\n            \"--all-tags\",\n            \"--all-commits\",\n            \"--with-deps\",\n            \"--recursive\",\n            \"--run-cache\",\n            \"--glob\",\n        ]\n    )\n    assert cli_args.func == CmdDataPush\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"push\", autospec=True, return_value=0)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        targets=[\"target1\", \"target2\"],\n        jobs=2,\n        remote=\"remote\",\n        all_branches=True,\n        all_tags=True,\n        all_commits=True,\n        with_deps=True,\n        recursive=True,\n        run_cache=True,\n        glob=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_json_diff_test_metrics_diff_deleted_metric.assert__show_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_json_diff_test_metrics_diff_deleted_metric.assert__show_diff_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 99, "span_ids": ["test_metrics_diff_new_metric", "test_metrics_diff_no_changes", "test_metrics_show_raw_diff", "test_metrics_show_json_diff", "test_metrics_diff_no_diff", "test_metrics_diff_deleted_metric"], "tokens": 392}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_json_diff():\n    assert _show_diff(\n        {\"metrics.json\": {\"a.b.c\": {\"old\": 1, \"new\": 2, \"diff\": 3}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path          Metric    Old    New    Change\n        metrics.json  a.b.c     1      2      3\"\"\"\n    )\n\n\ndef test_metrics_show_raw_diff():\n    assert _show_diff(\n        {\"metrics\": {\"\": {\"old\": \"1\", \"new\": \"2\"}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path     Metric    Old    New    Change\n        metrics            1      2      \u2014\"\"\"\n    )\n\n\ndef test_metrics_diff_no_diff():\n    assert _show_diff(\n        {\"other.json\": {\"a.b.d\": {\"old\": \"old\", \"new\": \"new\"}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path        Metric    Old    New    Change\n        other.json  a.b.d     old    new    \u2014\"\"\"\n    )\n\n\ndef test_metrics_diff_no_changes():\n    assert _show_diff({}) == \"\"\n\n\ndef test_metrics_diff_new_metric():\n    assert _show_diff(\n        {\"other.json\": {\"a.b.d\": {\"old\": None, \"new\": \"new\"}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path        Metric    Old    New    Change\n        other.json  a.b.d     \u2014      new    \u2014\"\"\"\n    )\n\n\ndef test_metrics_diff_deleted_metric():\n    assert _show_diff(\n        {\"other.json\": {\"a.b.d\": {\"old\": \"old\", \"new\": None}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path        Metric    Old    New    Change\n        other.json  a.b.d     old    \u2014      \u2014\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_logging_test_params_diff.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_logging_test_params_diff.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["imports", "test_params_diff"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport textwrap\n\nfrom dvc.cli import parse_args\nfrom dvc.command.params import CmdParamsDiff, _show_diff\n\n\ndef test_params_diff(dvc, mocker):\n    cli_args = parse_args(\n        [\n            \"params\",\n            \"diff\",\n            \"HEAD~10\",\n            \"HEAD~1\",\n            \"--targets\",\n            \"target\",\n            \"--all\",\n            \"--show-json\",\n            \"--show-md\",\n            \"--no-path\",\n        ]\n    )\n    assert cli_args.func == CmdParamsDiff\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.params.diff.diff\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        a_rev=\"HEAD~10\",\n        b_rev=\"HEAD~1\",\n        targets=[\"target\"],\n        all=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_changed_test_params_diff_prec.assert__show_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_changed_test_params_diff_prec.assert__show_diff_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 33, "end_line": 94, "span_ids": ["test_params_diff_deleted", "test_params_diff_prec", "test_params_diff_no_changes", "test_params_diff_changed", "test_params_diff_unchanged", "test_params_diff_list", "test_params_diff_new"], "tokens": 461}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_diff_changed():\n    assert _show_diff(\n        {\"params.yaml\": {\"a.b.c\": {\"old\": 1, \"new\": 2}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param    Old    New\n        params.yaml  a.b.c    1      2\"\"\"\n    )\n\n\ndef test_params_diff_list():\n    assert _show_diff(\n        {\"params.yaml\": {\"a.b.c\": {\"old\": 1, \"new\": [2, 3]}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param    Old    New\n        params.yaml  a.b.c    1      [2, 3]\"\"\"\n    )\n\n\ndef test_params_diff_unchanged():\n    assert _show_diff(\n        {\"params.yaml\": {\"a.b.d\": {\"old\": \"old\", \"new\": \"new\"}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param    Old    New\n        params.yaml  a.b.d    old    new\"\"\"\n    )\n\n\ndef test_params_diff_no_changes():\n    assert _show_diff({}) == \"\"\n\n\ndef test_params_diff_new():\n    assert _show_diff(\n        {\"params.yaml\": {\"a.b.d\": {\"old\": None, \"new\": \"new\"}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param    Old    New\n        params.yaml  a.b.d    \u2014      new\"\"\"\n    )\n\n\ndef test_params_diff_deleted():\n    assert _show_diff(\n        {\"params.yaml\": {\"a.b.d\": {\"old\": \"old\", \"new\": None}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param    Old    New\n        params.yaml  a.b.d    old    \u2014\"\"\"\n    )\n\n\ndef test_params_diff_prec():\n    assert _show_diff(\n        {\"params.yaml\": {\"train.lr\": {\"old\": 0.0042, \"new\": 0.0043}}}\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param     Old     New\n        params.yaml  train.lr  0.0042  0.0043\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_show_json_test_params_diff_show_json.with_caplog_at_level_logg.assert_params_yaml_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_show_json_test_params_diff_show_json.with_caplog_at_level_logg.assert_params_yaml_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 75, "end_line": 85, "span_ids": ["test_params_diff_show_json"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_diff_show_json(dvc, mocker, caplog):\n    cli_args = parse_args(\n        [\"params\", \"diff\", \"HEAD~10\", \"HEAD~1\", \"--show-json\"]\n    )\n    cmd = cli_args.func(cli_args)\n    mocker.patch(\n        \"dvc.repo.params.diff.diff\", return_value={\"params.yaml\": {\"a\": \"b\"}}\n    )\n    with caplog.at_level(logging.INFO, logger=\"dvc\"):\n        assert cmd.run() == 0\n        assert '{\"params.yaml\": {\"a\": \"b\"}}\\n' in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_getpass_test_url.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_getpass_test_url.None_1", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 30, "span_ids": ["imports", "test_url"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import getpass\nimport os\nimport sys\n\nimport pytest\nfrom mock import mock_open, patch\n\nfrom dvc.system import System\nfrom dvc.tree.ssh import SSHTree\n\n\ndef test_url(dvc):\n    user = \"test\"\n    host = \"123.45.67.89\"\n    port = 1234\n    path = \"/path/to/dir\"\n\n    # URL ssh://[user@]host.xz[:port]/path\n    url = f\"ssh://{user}@{host}:{port}{path}\"\n    config = {\"url\": url}\n\n    tree = SSHTree(dvc, config)\n    assert tree.path_info == url\n\n    # SCP-like URL ssh://[user@]host.xz:/absolute/path\n    url = f\"ssh://{user}@{host}:{path}\"\n    config = {\"url\": url}\n\n    tree = SSHTree(dvc, config)\n    assert tree.path_info == url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_no_path_if_sys_version_info_major.else_.builtin_module_name.___builtin___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_no_path_if_sys_version_info_major.else_.builtin_module_name.___builtin___", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 33, "end_line": 50, "span_ids": ["test_no_path", "impl"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_path(dvc):\n    config = {\"url\": \"ssh://127.0.0.1\"}\n    tree = SSHTree(dvc, config)\n    assert tree.path_info.path == \"\"\n\n\nmock_ssh_config = \"\"\"\nHost example.com\n   User ubuntu\n   HostName 1.2.3.4\n   Port 1234\n   IdentityFile ~/.ssh/not_default.key\n\"\"\"\n\nif sys.version_info.major == 3:\n    builtin_module_name = \"builtins\"\nelse:\n    builtin_module_name = \"__builtin__\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_gs.py_mock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_gs.py_mock_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_gs.py", "file_name": "test_gs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 55, "span_ids": ["test_gs_no_credspath", "test_dynamic_chunk_size", "test_init", "imports", "test_gs"], "tokens": 327}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import mock\nimport pytest\nimport requests\n\nfrom dvc.tree.gs import GSTree, dynamic_chunk_size\n\nBUCKET = \"bucket\"\nPREFIX = \"prefix\"\nURL = f\"gs://{BUCKET}/{PREFIX}\"\nCREDENTIALPATH = \"/path/to/gcp_credentials.json\"\nPROJECT = \"PROJECT\"\nCONFIG = {\n    \"projectname\": PROJECT,\n    \"url\": URL,\n    \"credentialpath\": CREDENTIALPATH,\n}\n\n\ndef test_init(dvc):\n    tree = GSTree(dvc, CONFIG)\n    assert tree.path_info == URL\n    assert tree.projectname == PROJECT\n    assert tree.credentialpath == CREDENTIALPATH\n\n\n@mock.patch(\"google.cloud.storage.Client.from_service_account_json\")\ndef test_gs(mock_client, dvc):\n    tree = GSTree(dvc, CONFIG)\n    assert tree.credentialpath\n    assert tree.gs\n    mock_client.assert_called_once_with(CREDENTIALPATH)\n\n\n@mock.patch(\"google.cloud.storage.Client\")\ndef test_gs_no_credspath(mock_client, dvc):\n    config = CONFIG.copy()\n    del config[\"credentialpath\"]\n    tree = GSTree(dvc, config)\n    assert tree.gs\n    mock_client.assert_called_with(PROJECT)\n\n\ndef test_dynamic_chunk_size():\n    chunk_sizes = []\n\n    @dynamic_chunk_size\n    def upload(chunk_size=None):\n        chunk_sizes.append(chunk_size)\n        raise requests.exceptions.ConnectionError()\n\n    with pytest.raises(requests.exceptions.ConnectionError):\n        upload()\n\n    assert chunk_sizes == [10485760, 5242880, 2621440, 1310720, 524288, 262144]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py_DataCloud.status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py_DataCloud.status_", "embedding": null, "metadata": {"file_path": "dvc/data_cloud.py", "file_name": "data_cloud.py", "file_type": "text/x-python", "category": "implementation", "start_line": 94, "end_line": 127, "span_ids": ["DataCloud.get_url_for", "DataCloud.status"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DataCloud:\n\n    def status(\n        self,\n        cache,\n        jobs=None,\n        remote=None,\n        show_checksums=False,\n        log_missing=True,\n    ):\n        \"\"\"Check status of data items in a cloud-agnostic way.\n\n        Args:\n            cache (NamedCache): named checksums to check status for.\n            jobs (int): number of jobs that can be running simultaneously.\n            remote (dvc.remote.base.BaseRemote): optional remote to compare\n                cache to. By default remote from core.remote config option\n                is used.\n            show_checksums (bool): show checksums instead of file names in\n                information messages.\n            log_missing (bool): log warning messages if file doesn't exist\n                neither in cache, neither in cloud.\n        \"\"\"\n        remote = self.get_remote(remote, \"status\")\n        return remote.status(\n            self.repo.cache.local,\n            cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n            log_missing=log_missing,\n        )\n\n    def get_url_for(self, remote, checksum):\n        remote = self.get_remote(remote)\n        return str(remote.tree.hash_to_path_info(checksum))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_logging_RemoteIndexNoop.intersection.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_logging_RemoteIndexNoop.intersection.return._", "embedding": null, "metadata": {"file_path": "dvc/remote/index.py", "file_name": "index.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 54, "span_ids": ["RemoteIndexNoop.update", "RemoteIndexNoop", "RemoteIndexNoop.__init__", "imports", "RemoteIndexNoop.clear", "RemoteIndexNoop.dump", "RemoteIndexNoop.__iter__", "RemoteIndexNoop.load", "RemoteIndexNoop.hashes", "RemoteIndexNoop.intersection", "RemoteIndexNoop.__exit__", "RemoteIndexNoop.dir_hashes", "RemoteIndexNoop.__contains__", "RemoteIndexNoop.__enter__"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport sqlite3\nimport threading\n\nfrom funcy import lchunks\n\nfrom dvc.state import _connect_sqlite\nfrom dvc.utils.fs import makedirs\n\nlogger = logging.getLogger(__name__)\n\n\nclass RemoteIndexNoop:\n    \"\"\"No-op class for remotes which are not indexed (i.e. local).\"\"\"\n\n    def __init__(self, *args, **kwargs):\n        pass\n\n    def __enter__(self):\n        pass\n\n    def __exit__(self, typ, value, tbck):\n        pass\n\n    def __iter__(self):\n        return iter([])\n\n    def __contains__(self, hash_):\n        return False\n\n    @staticmethod\n    def hashes():\n        return []\n\n    @staticmethod\n    def dir_hashes():\n        return []\n\n    def load(self):\n        pass\n\n    def dump(self):\n        pass\n\n    def clear(self):\n        pass\n\n    def update(self, *args):\n        pass\n\n    @staticmethod\n    def intersection(*args):\n        return []", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex_RemoteIndex._executemany.return.self_cursor_executemany_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex_RemoteIndex._executemany.return.self_cursor_executemany_c", "embedding": null, "metadata": {"file_path": "dvc/remote/index.py", "file_name": "index.py", "file_type": "text/x-python", "category": "implementation", "start_line": 57, "end_line": 121, "span_ids": ["RemoteIndex.is_dir_hash", "RemoteIndex._executemany", "RemoteIndex.dir_hashes", "RemoteIndex.__exit__", "RemoteIndex.__init__", "RemoteIndex.hashes", "RemoteIndex.__iter__", "RemoteIndex.__enter__", "RemoteIndex._execute", "RemoteIndex.__contains__", "RemoteIndex"], "tokens": 469}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RemoteIndex:\n    \"\"\"Class for indexing remote hashes in a sqlite3 database.\n\n    Args:\n        repo: repo for this remote index.\n        name: name for this index. Index db will be loaded from and saved to\n            ``.dvc/tmp/index/{name}.idx``.\n        dir_suffix: suffix used for naming directory hashes\n    \"\"\"\n\n    INDEX_SUFFIX = \".idx\"\n    VERSION = 1\n    INDEX_TABLE = \"remote_index\"\n    INDEX_TABLE_LAYOUT = \"checksum TEXT PRIMARY KEY, dir INTEGER NOT NULL\"\n    INDEX_DIR = \"index\"\n\n    def __init__(self, repo, name, dir_suffix=\".dir\"):\n        self.path = os.path.join(\n            repo.tmp_dir, self.INDEX_DIR, f\"{name}{self.INDEX_SUFFIX}\"\n        )\n\n        self.dir_suffix = dir_suffix\n        self.database = None\n        self.cursor = None\n        self.modified = False\n        self.lock = threading.Lock()\n\n    def __iter__(self):\n        cmd = f\"SELECT checksum FROM {self.INDEX_TABLE}\"\n        for (hash_,) in self._execute(cmd):\n            yield hash_\n\n    def __enter__(self):\n        self.lock.acquire()\n        self.load()\n\n    def __exit__(self, typ, value, tbck):\n        self.dump()\n        self.lock.release()\n\n    def __contains__(self, hash_):\n        cmd = \"SELECT checksum FROM {} WHERE checksum = (?)\".format(\n            self.INDEX_TABLE\n        )\n        self._execute(cmd, (hash_,))\n        return self.cursor.fetchone() is not None\n\n    def hashes(self):\n        \"\"\"Iterate over hashes stored in the index.\"\"\"\n        return iter(self)\n\n    def dir_hashes(self):\n        \"\"\"Iterate over .dir hashes stored in the index.\"\"\"\n        cmd = f\"SELECT checksum FROM {self.INDEX_TABLE} WHERE dir = 1\"\n        for (hash_,) in self._execute(cmd):\n            yield hash_\n\n    def is_dir_hash(self, hash_):\n        return hash_.endswith(self.dir_suffix)\n\n    def _execute(self, cmd, parameters=()):\n        return self.cursor.execute(cmd, parameters)\n\n    def _executemany(self, cmd, seq_of_parameters):\n        return self.cursor.executemany(cmd, seq_of_parameters)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex._prepare_db_RemoteIndex._prepare_db.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex._prepare_db_RemoteIndex._prepare_db.None_1", "embedding": null, "metadata": {"file_path": "dvc/remote/index.py", "file_name": "index.py", "file_type": "text/x-python", "category": "implementation", "start_line": 121, "end_line": 145, "span_ids": ["RemoteIndex._prepare_db"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RemoteIndex:\n\n    def _prepare_db(self, empty=False):\n        if not empty:\n            cmd = \"PRAGMA user_version;\"\n            self._execute(cmd)\n            ret = self.cursor.fetchall()\n            assert len(ret) == 1\n            assert len(ret[0]) == 1\n            assert isinstance(ret[0][0], int)\n            version = ret[0][0]\n\n            if version != self.VERSION:\n                logger.error(\n                    \"Index file version '{}' will be reformatted \"\n                    \"to the current version '{}'.\".format(\n                        version, self.VERSION,\n                    )\n                )\n                cmd = \"DROP TABLE IF EXISTS {};\"\n                self._execute(cmd.format(self.INDEX_TABLE))\n\n        cmd = \"CREATE TABLE IF NOT EXISTS {} ({})\"\n        self._execute(cmd.format(self.INDEX_TABLE, self.INDEX_TABLE_LAYOUT))\n\n        cmd = \"PRAGMA user_version = {};\"\n        self._execute(cmd.format(self.VERSION))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex.load_RemoteIndex.load.while_True_.try_.except_sqlite3_DatabaseEr.if_retries_0_.else_.raise": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex.load_RemoteIndex.load.while_True_.try_.except_sqlite3_DatabaseEr.if_retries_0_.else_.raise", "embedding": null, "metadata": {"file_path": "dvc/remote/index.py", "file_name": "index.py", "file_type": "text/x-python", "category": "implementation", "start_line": 149, "end_line": 173, "span_ids": ["RemoteIndex.load"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RemoteIndex:\n\n    def load(self):\n        \"\"\"(Re)load this index database.\"\"\"\n        retries = 1\n        while True:\n            assert self.database is None\n            assert self.cursor is None\n\n            empty = not os.path.isfile(self.path)\n            makedirs(os.path.dirname(self.path), exist_ok=True)\n            self.database = _connect_sqlite(self.path, {\"nolock\": 1})\n            self.cursor = self.database.cursor()\n\n            try:\n                self._prepare_db(empty=empty)\n                return\n            except sqlite3.DatabaseError:\n                self.cursor.close()\n                self.database.close()\n                self.database = None\n                self.cursor = None\n                if retries > 0:\n                    os.unlink(self.path)\n                    retries -= 1\n                else:\n                    raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex.dump_RemoteIndex.update.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex.dump_RemoteIndex.update.None_1", "embedding": null, "metadata": {"file_path": "dvc/remote/index.py", "file_name": "index.py", "file_type": "text/x-python", "category": "implementation", "start_line": 170, "end_line": 197, "span_ids": ["RemoteIndex.update", "RemoteIndex.clear", "RemoteIndex.dump"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RemoteIndex:\n\n    def dump(self):\n        \"\"\"Save this index database.\"\"\"\n        assert self.database is not None\n\n        self.database.commit()\n        self.cursor.close()\n        self.database.close()\n        self.database = None\n        self.cursor = None\n\n    def clear(self):\n        \"\"\"Clear this index (to force re-indexing later).\n\n        Changes to the index will not committed until dump() is called.\n        \"\"\"\n        cmd = f\"DELETE FROM {self.INDEX_TABLE}\"\n        self._execute(cmd)\n\n    def update(self, dir_hashes, file_hashes):\n        \"\"\"Update this index, adding the specified hashes.\n\n        Changes to the index will not committed until dump() is called.\n        \"\"\"\n        cmd = \"INSERT OR IGNORE INTO {} (checksum, dir) VALUES (?, ?)\".format(\n            self.INDEX_TABLE\n        )\n        self._executemany(cmd, ((hash_, True) for hash_ in dir_hashes))\n        self._executemany(cmd, ((hash_, False) for hash_ in file_hashes))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex.intersection_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/index.py_RemoteIndex.intersection_", "embedding": null, "metadata": {"file_path": "dvc/remote/index.py", "file_name": "index.py", "file_type": "text/x-python", "category": "implementation", "start_line": 199, "end_line": 209, "span_ids": ["RemoteIndex.intersection"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RemoteIndex:\n\n    def intersection(self, hashes):\n        \"\"\"Iterate over values from `hashes` which exist in the index.\"\"\"\n        # sqlite has a compile time limit of 999, see:\n        # https://www.sqlite.org/c3ref/c_limit_attached.html#sqlitelimitvariablenumber\n        for chunk in lchunks(999, hashes):\n            cmd = \"SELECT checksum FROM {} WHERE checksum IN ({})\".format(\n                self.INDEX_TABLE, \",\".join(\"?\" for hash_ in chunk)\n            )\n            for (hash_,) in self._execute(cmd, chunk):\n                yield hash_", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/imp_url.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/imp_url.py_os_", "embedding": null, "metadata": {"file_path": "dvc/repo/imp_url.py", "file_name": "imp_url.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 72, "span_ids": ["imports", "imp_url"], "tokens": 377}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.repo.scm_context import scm_context\nfrom dvc.utils import relpath, resolve_output, resolve_paths\nfrom dvc.utils.fs import path_isin\n\nfrom ..exceptions import OutputDuplicationError\nfrom . import locked\n\n\n@locked\n@scm_context\ndef imp_url(\n    self,\n    url,\n    out=None,\n    fname=None,\n    erepo=None,\n    frozen=True,\n    no_exec=False,\n    desc=None,\n    jobs=None,\n):\n    from dvc.dvcfile import Dvcfile\n    from dvc.stage import Stage, create_stage, restore_meta\n\n    out = resolve_output(url, out)\n    path, wdir, out = resolve_paths(self, out)\n\n    # NOTE: when user is importing something from within their own repository\n    if (\n        erepo is None\n        and os.path.exists(url)\n        and path_isin(os.path.abspath(url), self.root_dir)\n    ):\n        url = relpath(url, wdir)\n\n    stage = create_stage(\n        Stage,\n        self,\n        fname or path,\n        wdir=wdir,\n        deps=[url],\n        outs=[out],\n        erepo=erepo,\n    )\n    restore_meta(stage)\n    if stage.can_be_skipped:\n        return None\n\n    if desc:\n        stage.outs[0].desc = desc\n\n    dvcfile = Dvcfile(self, stage.path)\n    dvcfile.remove()\n\n    try:\n        self.check_modified_graph([stage])\n    except OutputDuplicationError as exc:\n        raise OutputDuplicationError(exc.output, set(exc.stages) - {stage})\n\n    if no_exec:\n        stage.ignore_outs()\n    else:\n        stage.run(jobs=jobs)\n\n    stage.frozen = frozen\n\n    dvcfile.dump(stage)\n\n    return stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/ls.py__ls_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/ls.py__ls_", "embedding": null, "metadata": {"file_path": "dvc/repo/ls.py", "file_name": "ls.py", "file_type": "text/x-python", "category": "implementation", "start_line": 54, "end_line": 87, "span_ids": ["_ls"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _ls(tree, path_info, recursive=None, dvc_only=False):\n    def onerror(exc):\n        raise exc\n\n    infos = []\n    try:\n        for root, dirs, files in tree.walk(\n            path_info.fspath, onerror=onerror, dvcfiles=True\n        ):\n            entries = chain(files, dirs) if not recursive else files\n            infos.extend(PathInfo(root) / entry for entry in entries)\n            if not recursive:\n                break\n    except NotADirectoryError:\n        infos.append(path_info)\n    except FileNotFoundError:\n        return {}\n\n    ret = {}\n    for info in infos:\n        metadata = tree.metadata(info)\n        if metadata.output_exists or not dvc_only:\n            path = (\n                path_info.name\n                if path_info == info\n                else str(info.relative_to(path_info))\n            )\n            ret[path] = {\n                \"isout\": metadata.is_output,\n                \"isdir\": metadata.isdir,\n                \"isexec\": metadata.is_exec,\n            }\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/diff.py_from_dvc_utils_diff_impor_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/diff.py_from_dvc_utils_diff_impor_", "embedding": null, "metadata": {"file_path": "dvc/repo/params/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["_get_params", "imports", "diff"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.utils.diff import diff as _diff\nfrom dvc.utils.diff import format_dict\n\nfrom .show import NoParamsError\n\n\ndef _get_params(repo, *args, revs=None, **kwargs):\n    try:\n        params = repo.params.show(*args, **kwargs, revs=revs)\n        return params\n    except NoParamsError:\n        return {}\n\n\ndef diff(repo, *args, a_rev=None, b_rev=None, **kwargs):\n    if repo.scm.no_commits:\n        return {}\n\n    with_unchanged = kwargs.pop(\"all\", False)\n\n    a_rev = a_rev or \"HEAD\"\n    b_rev = b_rev or \"workspace\"\n\n    params = _get_params(repo, *args, **kwargs, revs=[a_rev, b_rev])\n    old = params.get(a_rev, {})\n    new = params.get(b_rev, {})\n\n    return _diff(\n        format_dict(old), format_dict(new), with_unchanged=with_unchanged\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py_run_", "embedding": null, "metadata": {"file_path": "dvc/repo/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 77, "end_line": 141, "span_ids": ["run"], "tokens": 451}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\n@scm_context\ndef run(self, fname=None, no_exec=False, single_stage=False, **kwargs):\n    from dvc.dvcfile import PIPELINE_FILE, Dvcfile\n    from dvc.stage import Stage, create_stage, restore_meta\n\n    if not kwargs.get(\"cmd\"):\n        raise InvalidArgumentError(\"command is not specified\")\n\n    stage_cls = PipelineStage\n    path = PIPELINE_FILE\n    stage_name = kwargs.get(\"name\")\n\n    if stage_name and single_stage:\n        raise InvalidArgumentError(\n            \"`-n|--name` is incompatible with `--single-stage`\"\n        )\n\n    if stage_name and fname:\n        raise InvalidArgumentError(\n            \"`--file` is currently incompatible with `-n|--name` \"\n            \"and requires `--single-stage`\"\n        )\n\n    if not stage_name and not single_stage:\n        raise InvalidArgumentError(\"`-n|--name` is required\")\n\n    if single_stage:\n        kwargs.pop(\"name\", None)\n        stage_cls = Stage\n        path = fname or _get_file_path(kwargs)\n    else:\n        if not is_valid_name(stage_name):\n            raise InvalidStageName\n\n    params = parse_params(kwargs.pop(\"params\", []))\n    stage = create_stage(\n        stage_cls, repo=self, path=path, params=params, **kwargs\n    )\n    restore_meta(stage)\n    if kwargs.get(\"run_cache\", True) and stage.can_be_skipped:\n        return None\n\n    dvcfile = Dvcfile(self, stage.path)\n    try:\n        if kwargs.get(\"force\", True):\n            with suppress(ValueError):\n                self.stages.remove(stage)\n        else:\n            _check_stage_exists(dvcfile, stage)\n        self.check_modified_graph([stage])\n    except OutputDuplicationError as exc:\n        raise OutputDuplicationError(exc.output, set(exc.stages) - {stage})\n\n    if no_exec:\n        stage.ignore_outs()\n    else:\n        stage.run(\n            no_commit=kwargs.get(\"no_commit\", False),\n            run_cache=kwargs.get(\"run_cache\", True),\n        )\n\n    dvcfile.dump(stage, update_lock=not no_exec)\n    return stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/base.py__Manages_source_control_NoSCMError.__init__.super___init___msg_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/base.py__Manages_source_control_NoSCMError.__init__.super___init___msg_", "embedding": null, "metadata": {"file_path": "dvc/scm/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 34, "span_ids": ["NoSCMError", "RevError", "CloneError.__init__", "NoSCMError.__init__", "FileNotInRepoError", "docstring", "CloneError", "SCMError"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages source control systems (e.g. Git) in DVC.\"\"\"\n\nimport os\n\nfrom dvc.exceptions import DvcException\n\n\nclass SCMError(DvcException):\n    \"\"\"Base class for source control management errors.\"\"\"\n\n\nclass FileNotInRepoError(SCMError):\n    \"\"\"Thrown when trying to find .gitignore for a file that is not in a scm\n    repository.\n    \"\"\"\n\n\nclass CloneError(SCMError):\n    def __init__(self, url, path):\n        super().__init__(f\"Failed to clone repo '{url}' to '{path}'\")\n\n\nclass RevError(SCMError):\n    pass\n\n\nclass NoSCMError(SCMError):\n    def __init__(self):\n        msg = (\n            \"Only supported for Git repositories. If you're \"\n            \"seeing this error in a Git repo, try updating the DVC \"\n            \"configuration with `dvc config core.no_scm false`.\"\n        )\n        super().__init__(msg)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_PipelineStage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_PipelineStage_", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 653, "end_line": 695, "span_ids": ["PipelineStage.changed_stage", "PipelineStage._changed_stage_entry", "PipelineStage.__eq__", "PipelineStage._status_stage", "PipelineStage.merge", "PipelineStage.is_cached", "PipelineStage.addressing", "PipelineStage.__init__", "PipelineStage", "PipelineStage.__hash__", "PipelineStage.reload"], "tokens": 271}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PipelineStage(Stage):\n    def __init__(self, *args, name=None, **kwargs):\n        super().__init__(*args, **kwargs)\n        self.name = name\n        self.cmd_changed = False\n        self.tracked_vars = {}\n\n    def __eq__(self, other):\n        return super().__eq__(other) and self.name == other.name\n\n    def __hash__(self):\n        return hash((self.path_in_repo, self.name))\n\n    @property\n    def addressing(self):\n        from dvc.dvcfile import PIPELINE_FILE\n\n        if self.path and self.relpath == PIPELINE_FILE:\n            return self.name\n        return f\"{super().addressing}:{self.name}\"\n\n    def reload(self):\n        return self.dvcfile.stages[self.name]\n\n    @property\n    def is_cached(self):\n        return self.name in self.dvcfile.stages and super().is_cached\n\n    def _status_stage(self, ret):\n        if self.cmd_changed:\n            ret.append(\"changed command\")\n\n    def changed_stage(self):\n        if self.cmd_changed:\n            logger.debug(self._changed_stage_entry())\n        return self.cmd_changed\n\n    def _changed_stage_entry(self):\n        return f\"'cmd' of {self} has changed.\"\n\n    def merge(self, ancestor, other):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/exceptions.py_from_dvc_exceptions_impor_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/exceptions.py_from_dvc_exceptions_impor_", "embedding": null, "metadata": {"file_path": "dvc/stage/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 107, "span_ids": ["StagePathOutsideError", "StagePathNotFoundError", "StageNotFound", "MissingDataSource.__init__", "StageFileDoesNotExistError.__init__", "StageNameUnspecified", "StageFileAlreadyExistsError", "StagePathNotDirectoryError", "StageNameUnspecified.__init__", "InvalidStageName", "StageFileIsNotDvcFileError", "StageNotFound.__init__", "imports", "StageFileDoesNotExistError", "MissingDataSource", "StageCommitError", "InvalidStageName.__init__", "StageFileBadNameError", "StageFileFormatError", "StageCmdFailedError", "StageUpdateError.__init__", "StageCmdFailedError.__init__", "StageFileIsNotDvcFileError.__init__", "StageExternalOutputsError", "StageUpdateError", "DuplicateStageName"], "tokens": 569}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.exceptions import DvcException\n\n\nclass StageCmdFailedError(DvcException):\n    def __init__(self, cmd, status=None):\n        msg = f\"failed to run: {cmd}\"\n        if status is not None:\n            msg += f\", exited with {status}\"\n        super().__init__(msg)\n\n\nclass StageFileFormatError(DvcException):\n    pass\n\n\nclass StageFileDoesNotExistError(DvcException):\n    def __init__(self, fname):\n        self.file = fname\n        super().__init__(f\"'{self.file}' does not exist.\")\n\n\nclass StageFileAlreadyExistsError(DvcException):\n    pass\n\n\nclass StageFileIsNotDvcFileError(DvcException):\n    def __init__(self, fname):\n        from dvc.dvcfile import DVC_FILE_SUFFIX, is_dvc_file\n\n        msg = f\"'{fname}' is not a DVC-file\"\n\n        sname = fname + DVC_FILE_SUFFIX\n        if is_dvc_file(sname):\n            msg += f\" Do you mean '{sname}'?\"\n\n        super().__init__(msg)\n\n\nclass StageFileBadNameError(DvcException):\n    pass\n\n\nclass StagePathOutsideError(DvcException):\n    pass\n\n\nclass StagePathNotFoundError(DvcException):\n    pass\n\n\nclass StagePathNotDirectoryError(DvcException):\n    pass\n\n\nclass StageCommitError(DvcException):\n    pass\n\n\nclass StageExternalOutputsError(DvcException):\n    pass\n\n\nclass StageUpdateError(DvcException):\n    def __init__(self, path):\n        super().__init__(\n            \"update is not supported for '{}' that is not an \"\n            \"import.\".format(path)\n        )\n\n\nclass MissingDataSource(DvcException):\n    def __init__(self, missing_files):\n        assert len(missing_files) > 0\n\n        source = \"source\"\n        if len(missing_files) > 1:\n            source += \"s\"\n\n        msg = \"missing data '{}': {}\".format(source, \", \".join(missing_files))\n        super().__init__(msg)\n\n\nclass StageNotFound(KeyError, DvcException):\n    def __init__(self, file, name):\n        self.file = file.relpath\n        self.name = name\n        super().__init__(\n            f\"Stage '{self.name}' not found inside '{self.file}' file\"\n        )\n\n\nclass StageNameUnspecified(DvcException):\n    def __init__(self, file):\n        super().__init__(\n            \"Stage name not provided.\"\n            \"Please specify the name as: `{}:stage_name`\".format(file.relpath)\n        )\n\n\nclass DuplicateStageName(DvcException):\n    pass\n\n\nclass InvalidStageName(DvcException):\n    def __init__(self):\n        super().__init__(\"Stage name cannot contain punctuation characters.\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py__visual_width_resolve_output.return.out": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py__visual_width_resolve_output.return.out", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 316, "end_line": 362, "span_ids": ["_visual_width", "resolve_output", "env2bool", "relpath", "_visual_center"], "tokens": 327}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _visual_width(line):\n    \"\"\"Get the the number of columns required to display a string\"\"\"\n\n    return len(re.sub(colorama.ansitowin32.AnsiToWin32.ANSI_CSI_RE, \"\", line))\n\n\ndef _visual_center(line, width):\n    \"\"\"Center align string according to it's visual width\"\"\"\n\n    spaces = max(width - _visual_width(line), 0)\n    left_padding = int(spaces / 2)\n    right_padding = spaces - left_padding\n\n    return (left_padding * \" \") + line + (right_padding * \" \")\n\n\ndef relpath(path, start=os.curdir):\n    path = os.fspath(path)\n    start = os.path.abspath(os.fspath(start))\n\n    # Windows path on different drive than curdir doesn't have relpath\n    if os.name == \"nt\" and not os.path.commonprefix(\n        [start, os.path.abspath(path)]\n    ):\n        return path\n    return os.path.relpath(path, start)\n\n\ndef env2bool(var, undefined=False):\n    \"\"\"\n    undefined: return value if env var is unset\n    \"\"\"\n    var = os.getenv(var, None)\n    if var is None:\n        return undefined\n    return bool(re.search(\"1|y|yes|true\", var, flags=re.I))\n\n\ndef resolve_output(inp, out):\n    from urllib.parse import urlparse\n\n    name = os.path.basename(os.path.normpath(urlparse(inp).path))\n    if not out:\n        return name\n    if os.path.isdir(out):\n        return os.path.join(out, name)\n    return out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/diff.py_json__diff_vals.return.res": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/diff.py_json__diff_vals.return.res", "embedding": null, "metadata": {"file_path": "dvc/utils/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 32, "span_ids": ["imports", "_diff_vals", "_parse"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nfrom collections import defaultdict\n\nfrom .flatten import flatten\n\n\ndef _parse(raw):\n    if raw is None or isinstance(raw, (dict, list, int, float)):\n        return raw\n\n    assert isinstance(raw, str)\n    try:\n        return json.loads(raw)\n    except json.JSONDecodeError:\n        return raw\n\n\ndef _diff_vals(old, new, with_unchanged):\n    if (\n        isinstance(new, list)\n        and isinstance(old, list)\n        and len(old) == len(new) == 1\n    ):\n        return _diff_vals(old[0], new[0], with_unchanged)\n\n    if not with_unchanged and old == new:\n        return {}\n\n    res = {\"old\": old, \"new\": new}\n    if isinstance(new, (int, float)) and isinstance(old, (int, float)):\n        res[\"diff\"] = new - old\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/diff.py__flatten_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/diff.py__flatten_", "embedding": null, "metadata": {"file_path": "dvc/utils/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 35, "end_line": 121, "span_ids": ["_flatten", "format_dict", "diff", "_diff", "table", "_diff_dicts"], "tokens": 494}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _flatten(d):\n    if not d:\n        return defaultdict(lambda: None)\n\n    if isinstance(d, dict):\n        return defaultdict(lambda: None, flatten(d))\n\n    return defaultdict(lambda: \"unable to parse\")\n\n\ndef _diff_dicts(old_dict, new_dict, with_unchanged):\n    new = _flatten(new_dict)\n    old = _flatten(old_dict)\n\n    res = defaultdict(dict)\n\n    xpaths = set(old.keys())\n    xpaths.update(set(new.keys()))\n    for xpath in xpaths:\n        old_val = old[xpath]\n        new_val = new[xpath]\n        val_diff = _diff_vals(old_val, new_val, with_unchanged)\n        if val_diff:\n            res[xpath] = val_diff\n    return dict(res)\n\n\ndef _diff(old_raw, new_raw, with_unchanged):\n    old = _parse(old_raw)\n    new = _parse(new_raw)\n\n    if isinstance(new, dict) or isinstance(old, dict):\n        return _diff_dicts(old, new, with_unchanged)\n\n    val_diff = _diff_vals(old, new, with_unchanged)\n    if val_diff:\n        return {\"\": val_diff}\n\n    return {}\n\n\ndef diff(old, new, with_unchanged=False):\n    paths = set(old.keys())\n    paths.update(set(new.keys()))\n\n    res = defaultdict(dict)\n    for path in paths:\n        path_diff = _diff(old.get(path), new.get(path), with_unchanged)\n        if path_diff:\n            res[path] = path_diff\n    return dict(res)\n\n\ndef table(header, rows, markdown=False):\n    from tabulate import tabulate\n\n    if not rows and not markdown:\n        return \"\"\n\n    ret = tabulate(\n        rows,\n        header,\n        tablefmt=\"github\" if markdown else \"plain\",\n        disable_numparse=True,\n        # None will be shown as \"\" by default, overriding\n        missingval=\"\u2014\",\n    )\n\n    if markdown:\n        # NOTE: md table is incomplete without the trailing newline\n        ret += \"\\n\"\n\n    return ret\n\n\ndef format_dict(d):\n    ret = {}\n    for key, val in d.items():\n        if isinstance(val, dict):\n            new_val = format_dict(val)\n        elif isinstance(val, list):\n            new_val = str(val)\n        else:\n            new_val = val\n        ret[key] = new_val\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_dict_test_diff_dict.assert_dvc_params_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_dict_test_diff_dict.assert_dvc_params_diff_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 101, "span_ids": ["test_diff_dict"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_dict(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo:\\n  bar: baz\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"foo\")\n\n    tmp_dir.gen(\"params.yaml\", \"foo:\\n  bar: qux\")\n\n    assert dvc.params.diff() == {\n        \"params.yaml\": {\"foo.bar\": {\"old\": \"baz\", \"new\": \"qux\"}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_indexed_dir_missing_test_clear_on_download_err.mocked_clear_assert_calle": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_indexed_dir_missing_test_clear_on_download_err.mocked_clear_assert_calle", "embedding": null, "metadata": {"file_path": "tests/func/remote/test_index.py", "file_name": "test_index.py", "file_type": "text/x-python", "category": "test", "start_line": 59, "end_line": 87, "span_ids": ["test_indexed_dir_missing", "test_clear_on_gc", "test_clear_on_download_err"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_indexed_dir_missing(tmp_dir, dvc, tmp_path_factory, remote):\n    bar = tmp_dir.dvc_gen({\"bar\": {\"baz\": \"baz content\"}})[0].outs[0]\n    with remote.index:\n        remote.index.update([bar.hash_info.value], [])\n    dvc.status(cloud=True)\n    with remote.index:\n        assert not list(remote.index.hashes())\n\n\ndef test_clear_on_gc(tmp_dir, dvc, tmp_path_factory, remote, mocker):\n    (foo,) = tmp_dir.dvc_gen({\"foo\": \"foo content\"})\n    dvc.push()\n    dvc.remove(foo.relpath)\n\n    mocked_clear = mocker.patch.object(remote.INDEX_CLS, \"clear\")\n    dvc.gc(workspace=True, cloud=True)\n    mocked_clear.assert_called_with()\n\n\ndef test_clear_on_download_err(tmp_dir, dvc, tmp_path_factory, remote, mocker):\n    tmp_dir.dvc_gen({\"foo\": \"foo content\"})\n    dvc.push()\n    remove(dvc.cache.local.cache_dir)\n\n    mocked_clear = mocker.patch.object(remote.INDEX_CLS, \"clear\")\n    mocker.patch.object(LocalTree, \"_download\", side_effect=Exception)\n    with pytest.raises(DownloadError):\n        dvc.pull()\n    mocked_clear.assert_called_once_with()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_partial_upload_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_partial_upload_", "embedding": null, "metadata": {"file_path": "tests/func/remote/test_index.py", "file_name": "test_index.py", "file_type": "text/x-python", "category": "test", "start_line": 90, "end_line": 106, "span_ids": ["test_partial_upload"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_partial_upload(tmp_dir, dvc, tmp_path_factory, remote, mocker):\n    tmp_dir.dvc_gen({\"foo\": \"foo content\"})\n    tmp_dir.dvc_gen({\"bar\": {\"baz\": \"baz content\"}})\n\n    original = LocalTree._upload\n\n    def unreliable_upload(self, from_file, to_info, name=None, **kwargs):\n        if \"baz\" in name:\n            raise Exception(\"stop baz\")\n        return original(self, from_file, to_info, name, **kwargs)\n\n    mocker.patch.object(LocalTree, \"_upload\", unreliable_upload)\n    with pytest.raises(UploadError):\n        dvc.push()\n    with remote.index:\n        assert not list(remote.index.hashes())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_has_stage_with_name_test_has_stage_with_name.assert_copy_not_in_dvcf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_has_stage_with_name_test_has_stage_with_name.assert_copy_not_in_dvcf", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 63, "end_line": 74, "span_ids": ["test_has_stage_with_name"], "tokens": 107}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_has_stage_with_name(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        metrics=[\"foo2\"],\n        always_changed=True,\n    )\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    assert \"copy-foo-foo2\" in dvcfile.stages\n    assert \"copy\" not in dvcfile.stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproPipeline_TestReproPipelines.test_cli.self_assertEqual_ret_0_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproPipeline_TestReproPipelines.test_cli.self_assertEqual_ret_0_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 500, "end_line": 554, "span_ids": ["TestReproPipelines", "TestReproPipelines.setUp", "TestReproPipelines.test", "TestReproPipeline", "TestReproPipelines.test_cli", "TestReproPipeline.test_cli", "TestReproPipeline.test"], "tokens": 426}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproPipeline(TestReproChangedDeepData):\n    def test(self):\n        stages = self.dvc.reproduce(\n            self._get_stage_target(self.stage), force=True, pipeline=True\n        )\n        self.assertEqual(len(stages), 3)\n\n    def test_cli(self):\n        ret = main(\n            [\"repro\", \"--pipeline\", \"-f\", self._get_stage_target(self.stage)]\n        )\n        self.assertEqual(ret, 0)\n\n\nclass TestReproPipelines(SingleStageRun, TestDvc):\n    def setUp(self):\n        super().setUp()\n\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        self.foo_stage = stages[0]\n        self.assertTrue(self.foo_stage is not None)\n\n        stages = self.dvc.add(self.BAR)\n        self.assertEqual(len(stages), 1)\n        self.bar_stage = stages[0]\n        self.assertTrue(self.bar_stage is not None)\n\n        self.file1 = \"file1\"\n        self.file1_stage = self.dvc.run(\n            fname=self.file1 + \".dvc\",\n            outs=[self.file1],\n            deps=[self.FOO, self.CODE],\n            cmd=f\"python {self.CODE} {self.FOO} {self.file1}\",\n            single_stage=True,\n        )\n\n        self.file2 = \"file2\"\n        self.file2_stage = self._run(\n            fname=self.file2 + \".dvc\",\n            outs=[self.file2],\n            deps=[self.BAR, self.CODE],\n            cmd=f\"python {self.CODE} {self.BAR} {self.file2}\",\n            name=\"copy-BAR-file2\",\n        )\n\n    def test(self):\n        stages = self.dvc.reproduce(all_pipelines=True, force=True)\n        self.assertEqual(len(stages), 4)\n        self.assertTrue(self.file1_stage in stages)\n        self.assertTrue(self.file2_stage in stages)\n\n    def test_cli(self):\n        ret = main([\"repro\", \"-f\", \"-P\"])\n        self.assertEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedDir_TestReproChangedDir.test.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproChangedDir_TestReproChangedDir.test.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 705, "end_line": 735, "span_ids": ["TestReproChangedDir", "TestReproChangedDir.test"], "tokens": 224}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproChangedDir(SingleStageRun, TestDvc):\n    def test(self):\n        file_name = \"file\"\n        shutil.copyfile(self.FOO, file_name)\n\n        dir_name = \"dir\"\n        dir_code = \"dir.py\"\n        code = (\n            'import os; import shutil; os.mkdir(\"{}\"); '\n            'shutil.copyfile(\"{}\", os.path.join(\"{}\", \"{}\"))'\n        )\n\n        with open(dir_code, \"w+\") as fd:\n            fd.write(code.format(dir_name, file_name, dir_name, file_name))\n\n        stage = self._run(\n            outs=[dir_name],\n            deps=[file_name, dir_code],\n            cmd=f\"python {dir_code}\",\n            name=\"copy-in-dir\",\n        )\n        target = self._get_stage_target(stage)\n\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 0)\n\n        os.unlink(file_name)\n        shutil.copyfile(self.BAR, file_name)\n\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproAllPipelines_TestReproAllPipelines.test.with_patch_object_.self_assertEqual_mock_rep": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproAllPipelines_TestReproAllPipelines.test.with_patch_object_.self_assertEqual_mock_rep", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1243, "end_line": 1283, "span_ids": ["TestReproAllPipelines", "TestReproAllPipelines.test"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproAllPipelines(SingleStageRun, TestDvc):\n    def test(self):\n        stages = [\n            self._run(\n                fname=\"start.dvc\",\n                outs=[\"start.txt\"],\n                cmd=\"echo start > start.txt\",\n                name=\"start\",\n            ),\n            self._run(\n                fname=\"middle.dvc\",\n                deps=[\"start.txt\"],\n                outs=[\"middle.txt\"],\n                cmd=\"echo middle > middle.txt\",\n                name=\"middle\",\n            ),\n            self._run(\n                fname=\"final.dvc\",\n                deps=[\"middle.txt\"],\n                outs=[\"final.txt\"],\n                cmd=\"echo final > final.txt\",\n                name=\"final\",\n            ),\n            self._run(\n                fname=\"disconnected.dvc\",\n                outs=[\"disconnected.txt\"],\n                cmd=\"echo other > disconnected.txt\",\n                name=\"disconnected\",\n            ),\n        ]\n\n        from dvc.state import StateNoop\n\n        self.dvc.state = StateNoop()\n\n        with patch.object(\n            Stage, \"reproduce\", side_effect=stages\n        ) as mock_reproduce:\n            ret = main([\"repro\", \"--all-pipelines\"])\n            self.assertEqual(ret, 0)\n            self.assertEqual(mock_reproduce.call_count, 4)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproNoCommit_TestReproAlreadyCached.test.self_assertNotEqual_run_o": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproNoCommit_TestReproAlreadyCached.test.self_assertNotEqual_run_o", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 892, "end_line": 916, "span_ids": ["TestReproAlreadyCached", "TestReproAlreadyCached.test", "TestReproNoCommit.test", "TestReproNoCommit"], "tokens": 189}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproNoCommit(TestRepro):\n    def test(self):\n        remove(self.dvc.cache.local.cache_dir)\n        ret = main(\n            [\"repro\", self._get_stage_target(self.stage), \"--no-commit\"]\n        )\n        self.assertEqual(ret, 0)\n        self.assertEqual(os.listdir(self.dvc.cache.local.cache_dir), [\"runs\"])\n\n\nclass TestReproAlreadyCached(TestRepro):\n    def test(self):\n        stage = self._run(\n            fname=\"datetime.dvc\",\n            deps=[],\n            outs=[\"datetime.txt\"],\n            cmd='python -c \"import time; print(time.time())\" > datetime.txt',\n            name=\"datetime\",\n        )\n        run_out = stage.outs[0]\n        repro_out = self.dvc.reproduce(self._get_stage_target(stage))[0].outs[\n            0\n        ]\n\n        self.assertNotEqual(run_out.hash_info, repro_out.hash_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproAlreadyCached.test_force_with_dependencies_TestReproAlreadyCached.test_force_with_dependencies.self_assertNotEqual_run_o": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproAlreadyCached.test_force_with_dependencies_TestReproAlreadyCached.test_force_with_dependencies.self_assertNotEqual_run_o", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 918, "end_line": 932, "span_ids": ["TestReproAlreadyCached.test_force_with_dependencies"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproAlreadyCached(TestRepro):\n\n    def test_force_with_dependencies(self):\n        run_out = self.dvc.run(\n            fname=\"datetime.dvc\",\n            deps=[self.FOO],\n            outs=[\"datetime.txt\"],\n            cmd='python -c \"import time; print(time.time())\" > datetime.txt',\n            single_stage=True,\n        ).outs[0]\n\n        ret = main([\"repro\", \"--force\", \"datetime.dvc\"])\n        self.assertEqual(ret, 0)\n\n        repro_out = Dvcfile(self.dvc, \"datetime.dvc\").stage.outs[0]\n\n        self.assertNotEqual(run_out.hash_info, repro_out.hash_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_deps_is_added_in_dvcfile_test_repro_when_new_deps_is_added_in_dvcfile.assert_dvc_reproduce_targ": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_deps_is_added_in_dvcfile_test_repro_when_new_deps_is_added_in_dvcfile.assert_dvc_reproduce_targ", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 329, "end_line": 348, "span_ids": ["test_repro_when_new_deps_is_added_in_dvcfile"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_new_deps_is_added_in_dvcfile(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import Dvcfile\n\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    stage = dvc.run(\n        cmd=\"python copy.py {} {}\".format(\"foo\", \"foobar\"),\n        outs=[\"foobar\"],\n        deps=[\"foo\"],\n        name=\"copy-file\",\n    )\n    target = PIPELINE_FILE + \":copy-file\"\n    assert not dvc.reproduce(target)\n\n    dvcfile = Dvcfile(dvc, stage.path)\n    data, _ = dvcfile._load()\n    data[\"stages\"][\"copy-file\"][\"deps\"] += [\"copy.py\"]\n    dump_yaml(stage.path, data)\n\n    assert dvc.reproduce(target)[0] == stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_outs_is_added_in_dvcfile_test_repro_when_new_outs_is_added_in_dvcfile.assert_dvc_reproduce_targ": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_outs_is_added_in_dvcfile_test_repro_when_new_outs_is_added_in_dvcfile.assert_dvc_reproduce_targ", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 351, "end_line": 370, "span_ids": ["test_repro_when_new_outs_is_added_in_dvcfile"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_new_outs_is_added_in_dvcfile(tmp_dir, dvc):\n    from dvc.dvcfile import Dvcfile\n\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    stage = dvc.run(\n        cmd=\"python copy.py {} {}\".format(\"foo\", \"foobar\"),\n        outs=[],  # scenario where user forgot to add\n        deps=[\"foo\"],\n        name=\"copy-file\",\n    )\n    target = \":copy-file\"\n    assert not dvc.reproduce(target)\n\n    dvcfile = Dvcfile(dvc, stage.path)\n    data, _ = dvcfile._load()\n    data[\"stages\"][\"copy-file\"][\"outs\"] = [\"foobar\"]\n    dump_yaml(stage.path, data)\n\n    assert dvc.reproduce(target)[0] == stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_deps_is_moved_test_repro_when_new_deps_is_moved.assert_dvc_reproduce_targ": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_deps_is_moved_test_repro_when_new_deps_is_moved.assert_dvc_reproduce_targ", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 373, "end_line": 397, "span_ids": ["test_repro_when_new_deps_is_moved"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_new_deps_is_moved(tmp_dir, dvc):\n    from dvc.dvcfile import Dvcfile\n\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"foo\"})\n    stage = dvc.run(\n        cmd=\"python copy.py {} {}\".format(\"foo\", \"foobar\"),\n        outs=[\"foobar\"],\n        deps=[\"foo\"],\n        name=\"copy-file\",\n    )\n    target = \":copy-file\"\n    assert not dvc.reproduce(target)\n\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT_FORMAT.format(\"'bar'\", \"'foobar'\"))\n    from shutil import move\n\n    move(\"foo\", \"bar\")\n\n    dvcfile = Dvcfile(dvc, stage.path)\n    data, _ = dvcfile._load()\n    data[\"stages\"][\"copy-file\"][\"deps\"] = [\"bar\"]\n    dump_yaml(stage.path, data)\n\n    assert dvc.reproduce(target)[0] == stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_out_overlaps_others_stage_outs_test_repro_when_new_out_overlaps_others_stage_outs.with_pytest_raises_Overla.dvc_reproduce_run_copy_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_out_overlaps_others_stage_outs_test_repro_when_new_out_overlaps_others_stage_outs.with_pytest_raises_Overla.dvc_reproduce_run_copy_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 400, "end_line": 418, "span_ids": ["test_repro_when_new_out_overlaps_others_stage_outs"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_new_out_overlaps_others_stage_outs(tmp_dir, dvc):\n    from dvc.exceptions import OverlappingOutputPathsError\n\n    tmp_dir.gen({\"dir\": {\"file1\": \"file1\"}, \"foo\": \"foo\"})\n    dvc.add(\"dir\")\n    dump_yaml(\n        PIPELINE_FILE,\n        {\n            \"stages\": {\n                \"run-copy\": {\n                    \"cmd\": \"python copy {} {}\".format(\"foo\", \"dir/foo\"),\n                    \"deps\": [\"foo\"],\n                    \"outs\": [\"dir/foo\"],\n                }\n            }\n        },\n    )\n    with pytest.raises(OverlappingOutputPathsError):\n        dvc.reproduce(\":run-copy\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_deps_added_does_not_exist_test_repro_when_new_deps_added_does_not_exist.with_pytest_raises_Reprod.dvc_reproduce_run_copy_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_deps_added_does_not_exist_test_repro_when_new_deps_added_does_not_exist.with_pytest_raises_Reprod.dvc_reproduce_run_copy_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 397, "end_line": 413, "span_ids": ["test_repro_when_new_deps_added_does_not_exist"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_new_deps_added_does_not_exist(tmp_dir, dvc):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"foo\", \"foo\")\n    dump_yaml(\n        PIPELINE_FILE,\n        {\n            \"stages\": {\n                \"run-copy\": {\n                    \"cmd\": \"python copy.py {} {}\".format(\"foo\", \"foobar\"),\n                    \"deps\": [\"foo\", \"bar\"],\n                    \"outs\": [\"foobar\"],\n                }\n            }\n        },\n    )\n    with pytest.raises(ReproductionError):\n        dvc.reproduce(\":run-copy\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_outs_added_does_not_exist_test_repro_when_new_outs_added_does_not_exist.with_pytest_raises_Reprod.dvc_reproduce_run_copy_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_new_outs_added_does_not_exist_test_repro_when_new_outs_added_does_not_exist.with_pytest_raises_Reprod.dvc_reproduce_run_copy_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 416, "end_line": 432, "span_ids": ["test_repro_when_new_outs_added_does_not_exist"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_new_outs_added_does_not_exist(tmp_dir, dvc):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"foo\", \"foo\")\n    dump_yaml(\n        PIPELINE_FILE,\n        {\n            \"stages\": {\n                \"run-copy\": {\n                    \"cmd\": \"python copy.py {} {}\".format(\"foo\", \"foobar\"),\n                    \"deps\": [\"foo\"],\n                    \"outs\": [\"foobar\", \"bar\"],\n                }\n            }\n        },\n    )\n    with pytest.raises(ReproductionError):\n        dvc.reproduce(\":run-copy\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_with_multistage_and_single_stage_test_run_with_multistage_and_single_stage.assert_stage2_name_co": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_with_multistage_and_single_stage_test_run_with_multistage_and_single_stage.assert_stage2_name_co", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 22, "end_line": 33, "span_ids": ["test_run_with_multistage_and_single_stage"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_with_multistage_and_single_stage(tmp_dir, dvc, run_copy):\n    from dvc.stage import PipelineStage, Stage\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"foo1\", single_stage=True)\n    stage2 = run_copy(\"foo1\", \"foo2\", name=\"copy-foo1-foo2\")\n    stage3 = run_copy(\"foo2\", \"foo3\", single_stage=True)\n\n    assert isinstance(stage2, PipelineStage)\n    assert isinstance(stage1, Stage)\n    assert isinstance(stage3, Stage)\n    assert stage2.name == \"copy-foo1-foo2\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_multistage_with_wdir_test_multistage_with_wdir.assert_dir_data_sta": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_multistage_with_wdir_test_multistage_with_wdir.assert_dir_data_sta", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 93, "end_line": 106, "span_ids": ["test_multistage_with_wdir"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_multistage_with_wdir(tmp_dir, dvc):\n    from dvc.dvcfile import Dvcfile\n\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    stage = dvc.run(\n        cmd=\"cp foo foo1\",\n        deps=[\"foo\"],\n        name=\"copy-foo1-foo2\",\n        outs=[\"foo1\"],\n        wdir=\"dir\",\n    )\n\n    data, _ = Dvcfile(dvc, stage.path)._load()\n    assert \"dir\" == data[\"stages\"][\"copy-foo1-foo2\"][\"wdir\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_multistage_always_changed_test_multistage_always_changed.assert_data_stages_co": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_multistage_always_changed_test_multistage_always_changed.assert_data_stages_co", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 109, "end_line": 122, "span_ids": ["test_multistage_always_changed"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_multistage_always_changed(tmp_dir, dvc):\n    from dvc.dvcfile import Dvcfile\n\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    stage = dvc.run(\n        cmd=\"cp foo foo1\",\n        deps=[\"foo\"],\n        name=\"copy-foo1-foo2\",\n        outs=[\"foo1\"],\n        always_changed=True,\n    )\n\n    data, _ = Dvcfile(dvc, stage.path)._load()\n    assert data[\"stages\"][\"copy-foo1-foo2\"][\"always_changed\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_graph_test_graph.with_pytest_raises_Cyclic.dvc_run_deps_baz_out": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_graph_test_graph.with_pytest_raises_Cyclic.dvc_run_deps_baz_out", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 125, "end_line": 135, "span_ids": ["test_graph"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_graph(tmp_dir, dvc):\n    from dvc.exceptions import CyclicGraphError\n\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    dvc.run(deps=[\"foo\"], outs=[\"bar\"], cmd=\"echo foo > bar\", name=\"1\")\n\n    dvc.run(deps=[\"bar\"], outs=[\"baz\"], cmd=\"echo bar > baz\", name=\"2\")\n\n    with pytest.raises(CyclicGraphError):\n        dvc.run(deps=[\"baz\"], outs=[\"foo\"], cmd=\"echo baz > foo\", name=\"3\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_filecmp_from_tests_basic_env_impo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_filecmp_from_tests_basic_env_impo", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["imports"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import filecmp\nimport logging\nimport os\nimport textwrap\nimport uuid\nfrom pathlib import Path\n\nimport mock\nimport pytest\n\nfrom dvc.dependency.base import DependencyIsStageFileError\nfrom dvc.dvcfile import DVC_FILE_SUFFIX\nfrom dvc.exceptions import (\n    ArgumentDuplicationError,\n    CircularDependencyError,\n    CyclicGraphError,\n    OutputDuplicationError,\n    OverlappingOutputPathsError,\n    StagePathAsOutputError,\n)\nfrom dvc.main import main\nfrom dvc.output import BaseOutput\nfrom dvc.output.base import OutputIsStageFileError\nfrom dvc.repo import Repo as DvcRepo\nfrom dvc.stage import Stage\nfrom dvc.stage.exceptions import (\n    StageFileAlreadyExistsError,\n    StageFileBadNameError,\n    StagePathNotDirectoryError,\n    StagePathNotFoundError,\n    StagePathOutsideError,\n)\nfrom dvc.system import System\nfrom dvc.utils import file_md5\nfrom dvc.utils.serialize import load_yaml\nfrom tests.basic_env import TestDvc, TestDvcGit", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRun_TestRun.test.with_self_assertRaises_Ou.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRun_TestRun.test.with_self_assertRaises_Ou.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 39, "end_line": 74, "span_ids": ["TestRun.test", "TestRun"], "tokens": 287}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRun(TestDvc):\n    def test(self):\n        cmd = \"python {} {} {}\".format(self.CODE, self.FOO, \"out\")\n        deps = [self.FOO, self.CODE]\n        outs = [os.path.join(self.dvc.root_dir, \"out\")]\n        outs_no_cache = []\n        fname = \"out.dvc\"\n\n        self.dvc.add(self.FOO)\n        stage = self.dvc.run(\n            cmd=cmd,\n            deps=deps,\n            outs=outs,\n            outs_no_cache=outs_no_cache,\n            fname=fname,\n            single_stage=True,\n        )\n\n        self.assertTrue(filecmp.cmp(self.FOO, \"out\", shallow=False))\n        self.assertTrue(os.path.isfile(stage.path))\n        self.assertEqual(stage.cmd, cmd)\n        self.assertEqual(len(stage.deps), len(deps))\n        self.assertEqual(len(stage.outs), len(outs + outs_no_cache))\n        self.assertEqual(stage.outs[0].fspath, outs[0])\n        self.assertEqual(stage.outs[0].hash_info.value, file_md5(self.FOO)[0])\n        self.assertTrue(stage.path, fname)\n\n        with self.assertRaises(OutputDuplicationError):\n            self.dvc.run(\n                cmd=cmd,\n                deps=deps,\n                outs=outs,\n                outs_no_cache=outs_no_cache,\n                fname=\"duplicate\" + fname,\n                single_stage=True,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunDuplicatedArguments_TestRunDuplicatedArguments.test_non_normalized_paths.with_self_assertRaises_Ar.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunDuplicatedArguments_TestRunDuplicatedArguments.test_non_normalized_paths.with_self_assertRaises_Ar.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 173, "end_line": 202, "span_ids": ["TestRunDuplicatedArguments.test", "TestRunDuplicatedArguments.test_non_normalized_paths", "TestRunDuplicatedArguments", "TestRunDuplicatedArguments.test_outs_no_cache"], "tokens": 189}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunDuplicatedArguments(TestDvc):\n    def test(self):\n        with self.assertRaises(ArgumentDuplicationError):\n            self.dvc.run(\n                cmd=\"command\",\n                deps=[],\n                outs=[self.FOO, self.FOO],\n                fname=\"circular-dependency.dvc\",\n                single_stage=True,\n            )\n\n    def test_outs_no_cache(self):\n        with self.assertRaises(ArgumentDuplicationError):\n            self.dvc.run(\n                cmd=\"command\",\n                outs=[self.FOO],\n                outs_no_cache=[self.FOO],\n                fname=\"circular-dependency.dvc\",\n                single_stage=True,\n            )\n\n    def test_non_normalized_paths(self):\n        with self.assertRaises(ArgumentDuplicationError):\n            self.dvc.run(\n                cmd=\"command\",\n                deps=[],\n                outs=[\"foo\", \"./foo\"],\n                fname=\"circular-dependency.dvc\",\n                single_stage=True,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunBadName_TestRunBadName.test_not_found.with_self_assertRaises_St.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunBadName_TestRunBadName.test_not_found.with_self_assertRaises_St.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 277, "end_line": 303, "span_ids": ["TestRunBadName.test", "TestRunBadName", "TestRunBadName.test_not_found", "TestRunBadName.test_same_prefix"], "tokens": 198}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunBadName(TestDvc):\n    def test(self):\n        with self.assertRaises(StagePathOutsideError):\n            self.dvc.run(\n                cmd=\"command\",\n                fname=os.path.join(self.mkdtemp(), self.FOO + DVC_FILE_SUFFIX),\n                single_stage=True,\n            )\n\n    def test_same_prefix(self):\n        with self.assertRaises(StagePathOutsideError):\n            path = f\"{self._root_dir}-{uuid.uuid4()}\"\n            os.mkdir(path)\n            self.dvc.run(\n                cmd=\"command\",\n                fname=os.path.join(path, self.FOO + DVC_FILE_SUFFIX),\n                single_stage=True,\n            )\n\n    def test_not_found(self):\n        with self.assertRaises(StagePathNotFoundError):\n            path = os.path.join(self._root_dir, str(uuid.uuid4()))\n            self.dvc.run(\n                cmd=\"command\",\n                fname=os.path.join(path, self.FOO + DVC_FILE_SUFFIX),\n                single_stage=True,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunRemoveOuts_TestRunRemoveOuts.test.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunRemoveOuts_TestRunRemoveOuts.test.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 306, "end_line": 320, "span_ids": ["TestRunRemoveOuts", "TestRunRemoveOuts.test"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunRemoveOuts(TestDvc):\n    def test(self):\n        with open(self.CODE, \"w+\") as fobj:\n            fobj.write(\"import sys\\n\")\n            fobj.write(\"import os\\n\")\n            fobj.write(\"if os.path.exists(sys.argv[1]):\\n\")\n            fobj.write(\"    sys.exit(1)\\n\")\n            fobj.write(\"open(sys.argv[1], 'w+').close()\\n\")\n\n        self.dvc.run(\n            deps=[self.CODE],\n            outs=[self.FOO],\n            cmd=f\"python {self.CODE} {self.FOO}\",\n            single_stage=True,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunUnprotectOutsCopy_TestRunUnprotectOutsCopy.test.None_2.self_assertEqual_fd_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunUnprotectOutsCopy_TestRunUnprotectOutsCopy.test.None_2.self_assertEqual_fd_read_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 323, "end_line": 369, "span_ids": ["TestRunUnprotectOutsCopy.test", "TestRunUnprotectOutsCopy"], "tokens": 287}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunUnprotectOutsCopy(TestDvc):\n    def test(self):\n        with open(self.CODE, \"w+\") as fobj:\n            fobj.write(\"import sys\\n\")\n            fobj.write(\"with open(sys.argv[1], 'a+') as fobj:\\n\")\n            fobj.write(\"    fobj.write('foo')\\n\")\n\n        ret = main([\"config\", \"cache.type\", \"copy\"])\n        self.assertEqual(ret, 0)\n\n        ret = main(\n            [\n                \"run\",\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                self.FOO,\n                \"--single-stage\",\n                \"python\",\n                self.CODE,\n                self.FOO,\n            ]\n        )\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.access(self.FOO, os.W_OK))\n        with open(self.FOO) as fd:\n            self.assertEqual(fd.read(), \"foo\")\n\n        ret = main(\n            [\n                \"run\",\n                \"--force\",\n                \"--no-run-cache\",\n                \"--single-stage\",\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                self.FOO,\n                \"python\",\n                self.CODE,\n                self.FOO,\n            ]\n        )\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.access(self.FOO, os.W_OK))\n        with open(self.FOO) as fd:\n            self.assertEqual(fd.read(), \"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunUnprotectOutsSymlink_TestRunUnprotectOutsSymlink.test.None_4.self_assertEqual_fd_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunUnprotectOutsSymlink_TestRunUnprotectOutsSymlink.test.None_4.self_assertEqual_fd_read_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 372, "end_line": 434, "span_ids": ["TestRunUnprotectOutsSymlink", "TestRunUnprotectOutsSymlink.test"], "tokens": 404}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunUnprotectOutsSymlink(TestDvc):\n    def test(self):\n        with open(self.CODE, \"w+\") as fobj:\n            fobj.write(\"import sys\\n\")\n            fobj.write(\"import os\\n\")\n            fobj.write(\"with open(sys.argv[1], 'a+') as fobj:\\n\")\n            fobj.write(\"    fobj.write('foo')\\n\")\n\n        ret = main([\"config\", \"cache.type\", \"symlink\"])\n        self.assertEqual(ret, 0)\n\n        self.assertEqual(ret, 0)\n        ret = main(\n            [\n                \"run\",\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                self.FOO,\n                \"--single-stage\",\n                \"python\",\n                self.CODE,\n                self.FOO,\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        if os.name == \"nt\":\n            # NOTE: Windows symlink perms don't propagate to the target\n            self.assertTrue(os.access(self.FOO, os.W_OK))\n        else:\n            self.assertFalse(os.access(self.FOO, os.W_OK))\n\n        self.assertTrue(System.is_symlink(self.FOO))\n        with open(self.FOO) as fd:\n            self.assertEqual(fd.read(), \"foo\")\n\n        ret = main(\n            [\n                \"run\",\n                \"--force\",\n                \"--no-run-cache\",\n                \"--single-stage\",\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                self.FOO,\n                \"python\",\n                self.CODE,\n                self.FOO,\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        if os.name == \"nt\":\n            # NOTE: Windows symlink perms don't propagate to the target\n            self.assertTrue(os.access(self.FOO, os.W_OK))\n        else:\n            self.assertFalse(os.access(self.FOO, os.W_OK))\n\n        self.assertTrue(System.is_symlink(self.FOO))\n        with open(self.FOO) as fd:\n            self.assertEqual(fd.read(), \"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunUnprotectOutsHardlink_TestRunUnprotectOutsHardlink.test.None_2.self_assertEqual_fd_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunUnprotectOutsHardlink_TestRunUnprotectOutsHardlink.test.None_2.self_assertEqual_fd_read_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 437, "end_line": 487, "span_ids": ["TestRunUnprotectOutsHardlink", "TestRunUnprotectOutsHardlink.test"], "tokens": 328}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunUnprotectOutsHardlink(TestDvc):\n    def test(self):\n        with open(self.CODE, \"w+\") as fobj:\n            fobj.write(\"import sys\\n\")\n            fobj.write(\"import os\\n\")\n            fobj.write(\"with open(sys.argv[1], 'a+') as fobj:\\n\")\n            fobj.write(\"    fobj.write('foo')\\n\")\n\n        ret = main([\"config\", \"cache.type\", \"hardlink\"])\n        self.assertEqual(ret, 0)\n\n        self.assertEqual(ret, 0)\n        ret = main(\n            [\n                \"run\",\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                self.FOO,\n                \"--single-stage\",\n                \"python\",\n                self.CODE,\n                self.FOO,\n            ]\n        )\n        self.assertEqual(ret, 0)\n        self.assertFalse(os.access(self.FOO, os.W_OK))\n        self.assertTrue(System.is_hardlink(self.FOO))\n        with open(self.FOO) as fd:\n            self.assertEqual(fd.read(), \"foo\")\n\n        ret = main(\n            [\n                \"run\",\n                \"--force\",\n                \"--no-run-cache\",\n                \"--single-stage\",\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                self.FOO,\n                \"python\",\n                self.CODE,\n                self.FOO,\n            ]\n        )\n        self.assertEqual(ret, 0)\n        self.assertFalse(os.access(self.FOO, os.W_OK))\n        self.assertTrue(System.is_hardlink(self.FOO))\n        with open(self.FOO) as fd:\n            self.assertEqual(fd.read(), \"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunOverwrite_TestCmdRunOverwrite.test.None_9": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunOverwrite_TestCmdRunOverwrite.test.None_9", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 490, "end_line": 592, "span_ids": ["TestCmdRunOverwrite.test", "TestCmdRunOverwrite"], "tokens": 539}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCmdRunOverwrite(TestDvc):\n    def test(self):\n        # NOTE: using sleep() is a workaround  for filesystems\n        # with low mtime resolution. We have to use mtime since\n        # comparing mtime's is the only way to check that the stage\n        # file didn't change(size and inode in the first test down\n        # below don't change).\n        import time\n\n        ret = main(\n            [\n                \"run\",\n                \"-d\",\n                self.FOO,\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                \"out\",\n                \"--file\",\n                \"out.dvc\",\n                \"--single-stage\",\n                \"python\",\n                self.CODE,\n                self.FOO,\n                \"out\",\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        stage_mtime = os.path.getmtime(\"out.dvc\")\n\n        time.sleep(1)\n\n        ret = main(\n            [\n                \"run\",\n                \"-d\",\n                self.FOO,\n                \"-d\",\n                self.CODE,\n                \"-o\",\n                \"out\",\n                \"--file\",\n                \"out.dvc\",\n                \"--single-stage\",\n                \"python\",\n                self.CODE,\n                self.FOO,\n                \"out\",\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        # NOTE: check that dvcfile was NOT overwritten\n        self.assertEqual(stage_mtime, os.path.getmtime(\"out.dvc\"))\n        stage_mtime = os.path.getmtime(\"out.dvc\")\n\n        time.sleep(1)\n\n        ret = main(\n            [\n                \"run\",\n                \"-d\",\n                self.FOO,\n                \"-d\",\n                self.CODE,\n                \"--force\",\n                \"--no-run-cache\",\n                \"--single-stage\",\n                \"-o\",\n                \"out\",\n                \"--file\",\n                \"out.dvc\",\n                \"python\",\n                self.CODE,\n                self.FOO,\n                \"out\",\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        # NOTE: check that dvcfile was overwritten\n        self.assertNotEqual(stage_mtime, os.path.getmtime(\"out.dvc\"))\n        stage_mtime = os.path.getmtime(\"out.dvc\")\n\n        time.sleep(1)\n\n        ret = main(\n            [\n                \"run\",\n                \"--force\",\n                \"--single-stage\",\n                \"--file\",\n                \"out.dvc\",\n                \"-d\",\n                self.BAR,\n                f\"cat {self.BAR}\",\n            ]\n        )\n        self.assertEqual(ret, 0)\n\n        # NOTE: check that dvcfile was overwritten\n        self.assertNotEqual(stage_mtime, os.path.getmtime(\"out.dvc\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunCliMetrics_TestCmdRunCliMetrics.test_not_cached.with_open_metrics_txt_.self_assertEqual_fd_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunCliMetrics_TestCmdRunCliMetrics.test_not_cached.with_open_metrics_txt_.self_assertEqual_fd_read_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 595, "end_line": 622, "span_ids": ["TestCmdRunCliMetrics", "TestCmdRunCliMetrics.test_cached", "TestCmdRunCliMetrics.test_not_cached"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCmdRunCliMetrics(TestDvc):\n    def test_cached(self):\n        ret = main(\n            [\n                \"run\",\n                \"-m\",\n                \"metrics.txt\",\n                \"--single-stage\",\n                \"echo test > metrics.txt\",\n            ]\n        )\n        self.assertEqual(ret, 0)\n        with open(\"metrics.txt\") as fd:\n            self.assertEqual(fd.read().rstrip(), \"test\")\n\n    def test_not_cached(self):\n        ret = main(\n            [\n                \"run\",\n                \"-M\",\n                \"metrics.txt\",\n                \"--single-stage\",\n                \"echo test > metrics.txt\",\n            ]\n        )\n        self.assertEqual(ret, 0)\n        with open(\"metrics.txt\") as fd:\n            self.assertEqual(fd.read().rstrip(), \"test\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunWorkingDirectory_TestCmdRunWorkingDirectory.test_default_wdir_is_not_written.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunWorkingDirectory_TestCmdRunWorkingDirectory.test_default_wdir_is_not_written.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 625, "end_line": 640, "span_ids": ["TestCmdRunWorkingDirectory.test_default_wdir_is_not_written", "TestCmdRunWorkingDirectory"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCmdRunWorkingDirectory(TestDvc):\n    def test_default_wdir_is_not_written(self):\n        stage = self.dvc.run(\n            cmd=f\"echo test > {self.FOO}\",\n            outs=[self.FOO],\n            wdir=\".\",\n            single_stage=True,\n        )\n        d = load_yaml(stage.relpath)\n        self.assertNotIn(Stage.PARAM_WDIR, d.keys())\n\n        stage = self.dvc.run(\n            cmd=f\"echo test > {self.BAR}\", outs=[self.BAR], single_stage=True,\n        )\n        d = load_yaml(stage.relpath)\n        self.assertNotIn(Stage.PARAM_WDIR, d.keys())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunWorkingDirectory.test_fname_changes_path_and_wdir_TestCmdRunWorkingDirectory.test_fname_changes_path_and_wdir.self_assertEqual_d_Stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestCmdRunWorkingDirectory.test_fname_changes_path_and_wdir_TestCmdRunWorkingDirectory.test_fname_changes_path_and_wdir.self_assertEqual_d_Stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 642, "end_line": 660, "span_ids": ["TestCmdRunWorkingDirectory.test_fname_changes_path_and_wdir"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCmdRunWorkingDirectory(TestDvc):\n\n    def test_fname_changes_path_and_wdir(self):\n        dname = \"dir\"\n        os.mkdir(os.path.join(self._root_dir, dname))\n        foo = os.path.join(dname, self.FOO)\n        fname = os.path.join(dname, \"stage\" + DVC_FILE_SUFFIX)\n        stage = self.dvc.run(\n            cmd=f\"echo test > {foo}\",\n            outs=[foo],\n            fname=fname,\n            single_stage=True,\n        )\n        self.assertEqual(stage.wdir, os.path.realpath(self._root_dir))\n        self.assertEqual(\n            stage.path, os.path.join(os.path.realpath(self._root_dir), fname)\n        )\n\n        # Check that it is dumped properly (relative to fname)\n        d = load_yaml(stage.relpath)\n        self.assertEqual(d[Stage.PARAM_WDIR], \"..\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunCommit_TestRunCommit.test.self_assertEqual_len_os_l": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunCommit_TestRunCommit.test.self_assertEqual_len_os_l", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 715, "end_line": 738, "span_ids": ["TestRunCommit", "TestRunCommit.test"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunCommit(TestDvc):\n    def test(self):\n        fname = \"test\"\n        ret = main(\n            [\n                \"run\",\n                \"-o\",\n                fname,\n                \"--no-commit\",\n                \"--single-stage\",\n                \"echo\",\n                \"test\",\n                \">\",\n                fname,\n            ]\n        )\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.isfile(fname))\n        self.assertFalse(os.path.exists(self.dvc.cache.local.cache_dir))\n\n        ret = main([\"commit\", fname + \".dvc\"])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.isfile(fname))\n        self.assertEqual(len(os.listdir(self.dvc.cache.local.cache_dir)), 1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunPersist_TestRunPersist.should_remove_persistent_outs.self_assertFalse_os_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunPersist_TestRunPersist.should_remove_persistent_outs.self_assertFalse_os_path_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 749, "end_line": 796, "span_ids": ["TestRunPersist.should_append_upon_repro", "TestRunPersist.should_remove_persistent_outs", "TestRunPersist.run_command", "TestRunPersist.outs_command", "TestRunPersist", "TestRunPersist._test", "TestRunPersist.stage_should_contain_persist_flag"], "tokens": 310}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunPersist(TestDvc):\n    @property\n    def outs_command(self):\n        raise NotImplementedError\n\n    def _test(self):\n        file = \"file.txt\"\n        file_content = \"content\"\n        stage_file = file + DVC_FILE_SUFFIX\n\n        self.run_command(file, file_content)\n        self.stage_should_contain_persist_flag(stage_file)\n\n        self.should_append_upon_repro(file, stage_file)\n\n        self.should_remove_persistent_outs(file, stage_file)\n\n    def run_command(self, file, file_content):\n        ret = main(\n            [\n                \"run\",\n                \"--single-stage\",\n                self.outs_command,\n                file,\n                f\"echo {file_content} >> {file}\",\n            ]\n        )\n        self.assertEqual(0, ret)\n\n    def stage_should_contain_persist_flag(self, stage_file):\n        stage_file_content = load_yaml(stage_file)\n        self.assertEqual(\n            True, stage_file_content[\"outs\"][0][BaseOutput.PARAM_PERSIST]\n        )\n\n    def should_append_upon_repro(self, file, stage_file):\n        ret = main([\"repro\", stage_file])\n        self.assertEqual(0, ret)\n\n        with open(file) as fobj:\n            lines = fobj.readlines()\n        self.assertEqual(2, len(lines))\n\n    def should_remove_persistent_outs(self, file, stage_file):\n        ret = main([\"remove\", stage_file, \"--outs\"])\n        self.assertEqual(0, ret)\n\n        self.assertFalse(os.path.exists(file))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunPersistOuts_TestShouldRaiseOnOverlappingOutputPaths.test.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunPersistOuts_TestShouldRaiseOnOverlappingOutputPaths.test.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 799, "end_line": 843, "span_ids": ["TestRunPersistOutsNoCache.test", "TestRunPersistOuts.outs_command", "TestShouldRaiseOnOverlappingOutputPaths", "TestShouldRaiseOnOverlappingOutputPaths.test", "TestRunPersistOuts.test", "TestRunPersistOuts", "TestRunPersistOutsNoCache", "TestRunPersistOutsNoCache.outs_command"], "tokens": 302}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunPersistOuts(TestRunPersist):\n    @property\n    def outs_command(self):\n        return \"--outs-persist\"\n\n    def test(self):\n        self._test()\n\n\nclass TestRunPersistOutsNoCache(TestRunPersist):\n    @property\n    def outs_command(self):\n        return \"--outs-persist-no-cache\"\n\n    def test(self):\n        self._test()\n\n\nclass TestShouldRaiseOnOverlappingOutputPaths(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.DATA_DIR])\n        self.assertEqual(0, ret)\n\n        with self.assertRaises(OverlappingOutputPathsError) as err:\n            self.dvc.run(\n                outs=[self.DATA],\n                cmd=f\"echo data >> {self.DATA}\",\n                single_stage=True,\n            )\n        error_output = str(err.exception)\n\n        data_dir_stage = self.DATA_DIR + DVC_FILE_SUFFIX\n        data_stage = os.path.basename(self.DATA) + DVC_FILE_SUFFIX\n\n        self.assertIn(\"The output paths:\\n\", error_output)\n        self.assertIn(\n            f\"\\n'{self.DATA_DIR}'('{data_dir_stage}')\\n\", error_output,\n        )\n        self.assertIn(f\"\\n'{self.DATA}'('{data_stage}')\\n\", error_output)\n        self.assertIn(\n            \"overlap and are thus in the same tracked directory.\\n\"\n            \"To keep reproducibility, outputs should be in separate \"\n            \"tracked directories or tracked individually.\",\n            error_output,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRerunWithSameOutputs_TestRerunWithSameOutputs._run_twice_with_same_outputs.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRerunWithSameOutputs_TestRerunWithSameOutputs._run_twice_with_same_outputs.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 845, "end_line": 879, "span_ids": ["TestRerunWithSameOutputs", "TestRerunWithSameOutputs._read_content_only", "TestRerunWithSameOutputs._outs_command", "TestRerunWithSameOutputs._run_twice_with_same_outputs"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRerunWithSameOutputs(TestDvc):\n    def _read_content_only(self, path):\n        with open(path) as fobj:\n            return [line.rstrip() for line in fobj]\n\n    @property\n    def _outs_command(self):\n        raise NotImplementedError\n\n    def _run_twice_with_same_outputs(self):\n        ret = main(\n            [\n                \"run\",\n                \"--single-stage\",\n                \"--outs\",\n                self.FOO,\n                f\"echo {self.FOO_CONTENTS} > {self.FOO}\",\n            ]\n        )\n        self.assertEqual(0, ret)\n\n        output_file_content = self._read_content_only(self.FOO)\n        self.assertEqual([self.FOO_CONTENTS], output_file_content)\n\n        ret = main(\n            [\n                \"run\",\n                self._outs_command,\n                self.FOO,\n                \"--force\",\n                \"--single-stage\",\n                f\"echo {self.BAR_CONTENTS} >> {self.FOO}\",\n            ]\n        )\n        self.assertEqual(0, ret)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestNewRunShouldRemoveOutsOnNoPersist_TestNewRunShouldNotRemoveOutsOnPersist._outs_command.return._outs_persist_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestNewRunShouldRemoveOutsOnNoPersist_TestNewRunShouldNotRemoveOutsOnPersist._outs_command.return._outs_persist_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 770, "end_line": 793, "span_ids": ["TestNewRunShouldNotRemoveOutsOnPersist._outs_command", "TestNewRunShouldRemoveOutsOnNoPersist", "TestNewRunShouldNotRemoveOutsOnPersist.test", "TestNewRunShouldRemoveOutsOnNoPersist._outs_command", "TestNewRunShouldNotRemoveOutsOnPersist", "TestNewRunShouldRemoveOutsOnNoPersist.test"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestNewRunShouldRemoveOutsOnNoPersist(TestRerunWithSameOutputs):\n    def test(self):\n        self._run_twice_with_same_outputs()\n\n        output_file_content = self._read_content_only(self.FOO)\n        self.assertEqual([self.BAR_CONTENTS], output_file_content)\n\n    @property\n    def _outs_command(self):\n        return \"--outs\"\n\n\nclass TestNewRunShouldNotRemoveOutsOnPersist(TestRerunWithSameOutputs):\n    def test(self):\n        self._run_twice_with_same_outputs()\n\n        output_file_content = self._read_content_only(self.FOO)\n        self.assertEqual(\n            [self.FOO_CONTENTS, self.BAR_CONTENTS], output_file_content\n        )\n\n    @property\n    def _outs_command(self):\n        return \"--outs-persist\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestShouldNotCheckoutUponCorruptedLocalHardlinkCache_TestShouldNotCheckoutUponCorruptedLocalHardlinkCache.test.with_self_dvc_lock_self_.with_patch_checkout_as_mo.with_patch_run_as_mock_ru.mock_checkout_assert_not_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestShouldNotCheckoutUponCorruptedLocalHardlinkCache_TestShouldNotCheckoutUponCorruptedLocalHardlinkCache.test.with_self_dvc_lock_self_.with_patch_checkout_as_mo.with_patch_run_as_mock_ru.mock_checkout_assert_not_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 908, "end_line": 938, "span_ids": ["TestShouldNotCheckoutUponCorruptedLocalHardlinkCache", "TestShouldNotCheckoutUponCorruptedLocalHardlinkCache.setUp", "TestShouldNotCheckoutUponCorruptedLocalHardlinkCache.test"], "tokens": 257}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestShouldNotCheckoutUponCorruptedLocalHardlinkCache(TestDvc):\n    def setUp(self):\n        super().setUp()\n        ret = main([\"config\", \"cache.type\", \"hardlink\"])\n        self.assertEqual(ret, 0)\n        self.dvc = DvcRepo(\".\")\n\n    def test(self):\n        cmd = f\"python {self.CODE} {self.FOO} {self.BAR}\"\n        stage = self.dvc.run(\n            deps=[self.FOO], outs=[self.BAR], cmd=cmd, single_stage=True\n        )\n\n        os.chmod(self.BAR, 0o644)\n        with open(self.BAR, \"w\") as fd:\n            fd.write(\"corrupting the output cache\")\n\n        patch_checkout = mock.patch.object(\n            stage.outs[0], \"checkout\", wraps=stage.outs[0].checkout\n        )\n        from dvc.stage.run import cmd_run\n\n        patch_run = mock.patch(\"dvc.stage.run.cmd_run\", wraps=cmd_run)\n\n        with self.dvc.lock, self.dvc.state:\n            with patch_checkout as mock_checkout:\n                with patch_run as mock_run:\n                    stage.run()\n\n                    mock_run.assert_called_once()\n                    mock_checkout.assert_not_called()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_os_test_empty_list.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_os_test_empty_list.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 53, "span_ids": ["test_none", "imports", "test_cmd_none", "test_no_cmd", "test_empty_list", "test_cmd_str", "test_object", "test_cmd_obj"], "tokens": 305}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport tempfile\n\nimport pytest\n\nfrom dvc.dvcfile import SingleStageFile\nfrom dvc.main import main\nfrom dvc.output.local import LocalOutput\nfrom dvc.repo import Repo, lock_repo\nfrom dvc.stage import PipelineStage, Stage\nfrom dvc.stage.exceptions import StageFileFormatError\nfrom dvc.stage.run import run_stage\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils.serialize import dump_yaml, load_yaml\nfrom tests.basic_env import TestDvc\n\n\ndef test_cmd_obj():\n    with pytest.raises(StageFileFormatError):\n        SingleStageFile.validate({Stage.PARAM_CMD: {}})\n\n\ndef test_cmd_none():\n    SingleStageFile.validate({Stage.PARAM_CMD: None})\n\n\ndef test_no_cmd():\n    SingleStageFile.validate({})\n\n\ndef test_cmd_str():\n    SingleStageFile.validate({Stage.PARAM_CMD: \"cmd\"})\n\n\ndef test_object():\n    with pytest.raises(StageFileFormatError):\n        SingleStageFile.validate({Stage.PARAM_DEPS: {}})\n\n    with pytest.raises(StageFileFormatError):\n        SingleStageFile.validate({Stage.PARAM_OUTS: {}})\n\n\ndef test_none():\n    SingleStageFile.validate({Stage.PARAM_DEPS: None})\n    SingleStageFile.validate({Stage.PARAM_OUTS: None})\n\n\ndef test_empty_list():\n    d = {Stage.PARAM_DEPS: []}\n    SingleStageFile.validate(d)\n\n    d = {Stage.PARAM_OUTS: []}\n    SingleStageFile.validate(d)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_list_test_list.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_list_test_list.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 56, "end_line": 68, "span_ids": ["test_list"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_list():\n    lst = [\n        {LocalOutput.PARAM_PATH: \"foo\", LocalTree.PARAM_CHECKSUM: \"123\"},\n        {LocalOutput.PARAM_PATH: \"bar\", LocalTree.PARAM_CHECKSUM: None},\n        {LocalOutput.PARAM_PATH: \"baz\"},\n    ]\n    d = {Stage.PARAM_DEPS: lst}\n    SingleStageFile.validate(d)\n\n    lst[0][LocalOutput.PARAM_CACHE] = True\n    lst[1][LocalOutput.PARAM_CACHE] = False\n    d = {Stage.PARAM_OUTS: lst}\n    SingleStageFile.validate(d)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_index.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_index.py_os_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_index.py", "file_name": "test_index.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 58, "span_ids": ["test_init", "imports", "test_roundtrip", "test_intersection", "test_is_dir_hash", "test_update", "test_clear", "index"], "tokens": 339}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\nfrom funcy import first\n\nfrom dvc.remote.index import RemoteIndex\n\n\n@pytest.fixture(scope=\"function\")\ndef index(dvc):\n    idx = RemoteIndex(dvc, \"foo\")\n    idx.load()\n    yield idx\n    idx.dump()\n    os.unlink(idx.path)\n\n\ndef test_init(dvc, index):\n    assert str(index.path) == os.path.join(dvc.tmp_dir, \"index\", \"foo.idx\")\n\n\ndef test_is_dir_hash(dvc, index):\n    assert index.is_dir_hash(\"foo.dir\")\n    assert not index.is_dir_hash(\"foo\")\n\n\ndef test_roundtrip(dvc, index):\n    expected_dir = {\"1234.dir\"}\n    expected_file = {\"5678\"}\n    index.update(expected_dir, expected_file)\n    index.dump()\n    index.load()\n    assert set(index.dir_hashes()) == expected_dir\n    assert set(index.hashes()) == expected_dir | expected_file\n\n\ndef test_clear(dvc, index):\n    index.update(\n        [\"1234.dir\"], [\"5678\"],\n    )\n    index.clear()\n    assert first(index.hashes()) is None\n\n\ndef test_update(dvc, index):\n    expected_dir = {\"1234.dir\"}\n    expected_file = {\"5678\"}\n    index.update(expected_dir, expected_file)\n    assert set(index.dir_hashes()) == expected_dir\n    assert set(index.hashes()) == expected_dir | expected_file\n\n\ndef test_intersection(dvc, index):\n    hashes = (str(i) for i in range(2000))\n    expected = {str(i) for i in range(1000)}\n    index.update([], hashes)\n    assert set(index.intersection(expected)) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_load_when_lockfile_is_corrupted_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_load_when_lockfile_is_corrupted_", "embedding": null, "metadata": {"file_path": "tests/unit/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 60, "end_line": 82, "span_ids": ["test_load_when_lockfile_is_corrupted"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"corrupt_data\",\n    [\n        {\"s1\": {\"outs\": []}},\n        {\"s1\": {}},\n        {\n            \"s1\": {\n                \"cmd\": \"command\",\n                \"outs\": [\n                    {\"md5\": \"checksum\", \"path\": \"path\", \"random\": \"value\"}\n                ],\n            }\n        },\n        {\"s1\": {\"cmd\": \"command\", \"deps\": [{\"md5\": \"checksum\"}]}},\n    ],\n)\ndef test_load_when_lockfile_is_corrupted(tmp_dir, dvc, corrupt_data):\n    dump_yaml(\"Dvcfile.lock\", corrupt_data)\n    lockfile = Lockfile(dvc, \"Dvcfile.lock\")\n    with pytest.raises(LockfileCorruptedError) as exc_info:\n        lockfile.load()\n    assert \"Dvcfile.lock\" in str(exc_info.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_TestRemote.test_relative_path_TestRemote.test_relative_path.self_assertEqual_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_TestRemote.test_relative_path_TestRemote.test_relative_path.self_assertEqual_", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 52, "span_ids": ["TestRemote.test_relative_path"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRemote(TestDvc):\n\n    def test_relative_path(self):\n        dname = os.path.join(\"..\", \"path\", \"to\", \"dir\")\n        ret = main([\"remote\", \"add\", \"mylocal\", dname])\n        self.assertEqual(ret, 0)\n\n        # NOTE: we are in the repo's root and config is in .dvc/, so\n        # dir path written to config should be just one level above.\n        rel = os.path.join(\"..\", dname)\n        config = configobj.ConfigObj(self.dvc.config.files[\"repo\"])\n        self.assertEqual(\n            config['remote \"mylocal\"'][\"url\"], rel.replace(\"\\\\\", \"/\")\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/checkout.py_argparse_log_changes.for_state_color_in_color.for_entry_in_entries_.logger_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/checkout.py_argparse_log_changes.for_state_color_in_color.for_entry_in_entries_.logger_info_", "embedding": null, "metadata": {"file_path": "dvc/command/checkout.py", "file_name": "checkout.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 37, "span_ids": ["log_changes", "imports"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\nimport operator\n\nimport colorama\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import CheckoutError\nfrom dvc.utils.humanize import get_summary\n\nlogger = logging.getLogger(__name__)\n\n\ndef log_changes(stats):\n    colors = [\n        (\"modified\", colorama.Fore.YELLOW,),\n        (\"added\", colorama.Fore.GREEN),\n        (\"deleted\", colorama.Fore.RED,),\n    ]\n\n    for state, color in colors:\n        entries = stats.get(state)\n\n        if not entries:\n            continue\n\n        for entry in entries:\n            logger.info(\n                \"{color}{state}{nc}{spacing}{entry}\".format(\n                    color=color,\n                    state=state[0].upper(),\n                    nc=colorama.Fore.RESET,\n                    spacing=\"\\t\",\n                    entry=entry,\n                )\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_shared_parent_parser_shared_parent_parser.return.parent_parser": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_shared_parent_parser_shared_parent_parser.return.parent_parser", "embedding": null, "metadata": {"file_path": "dvc/command/data_sync.py", "file_name": "data_sync.py", "file_type": "text/x-python", "category": "implementation", "start_line": 89, "end_line": 116, "span_ids": ["shared_parent_parser"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def shared_parent_parser():\n    from dvc.cli import get_parent_parser\n\n    # Parent parser used in pull/push/status\n    parent_parser = argparse.ArgumentParser(\n        add_help=False, parents=[get_parent_parser()]\n    )\n    parent_parser.add_argument(\n        \"-j\",\n        \"--jobs\",\n        type=int,\n        help=(\n            \"Number of jobs to run simultaneously. \"\n            \"The default value is 4 * cpu_count(). \"\n            \"For SSH remotes, the default is 4. \"\n        ),\n        metavar=\"<number>\",\n    )\n    parent_parser.add_argument(\n        \"targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these tracked files/directories, \"\n            \".dvc files, or stage names.\"\n        ),\n    ).complete = completion.DVC_FILE\n\n    return parent_parser", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteDefault_CmdRemoteList.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteDefault_CmdRemoteList.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 114, "span_ids": ["CmdRemoteList.run", "CmdRemoteList", "CmdRemoteDefault", "CmdRemoteDefault.run"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdRemoteDefault(CmdRemote):\n    def run(self):\n\n        if self.args.name is None and not self.args.unset:\n            conf = self.config.read(self.args.level)\n            try:\n                print(conf[\"core\"][\"remote\"])\n            except KeyError:\n                logger.info(\"No default remote set\")\n                return 1\n        else:\n            with self.config.edit(self.args.level) as conf:\n                if self.args.unset:\n                    conf[\"core\"].pop(\"remote\", None)\n                else:\n                    merged_conf = self.config.load_config_to_level(\n                        self.args.level\n                    )\n                    if (\n                        self.args.name in conf[\"remote\"]\n                        or self.args.name in merged_conf[\"remote\"]\n                    ):\n                        conf[\"core\"][\"remote\"] = self.args.name\n                    else:\n                        raise ConfigError(\n                            \"default remote must be present in remote list.\"\n                        )\n        return 0\n\n\nclass CmdRemoteList(CmdRemote):\n    def run(self):\n        conf = self.config.read(self.args.level)\n        for name, conf in conf[\"remote\"].items():\n            logger.info(\"{}\\t{}\".format(name, conf[\"url\"]))\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/__init__.py_from_collections_import_d_SCHEMA_update_ParamsDepen": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/__init__.py_from_collections_import_d_SCHEMA_update_ParamsDepen", "embedding": null, "metadata": {"file_path": "dvc/dependency/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 61, "span_ids": ["imports"], "tokens": 519}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import defaultdict\nfrom urllib.parse import urlparse\n\nimport dvc.output as output\nfrom dvc.dependency.azure import AzureDependency\nfrom dvc.dependency.gs import GSDependency\nfrom dvc.dependency.hdfs import HDFSDependency\nfrom dvc.dependency.http import HTTPDependency\nfrom dvc.dependency.https import HTTPSDependency\nfrom dvc.dependency.local import LocalDependency\nfrom dvc.dependency.param import ParamsDependency\nfrom dvc.dependency.s3 import S3Dependency\nfrom dvc.dependency.ssh import SSHDependency\nfrom dvc.dependency.webdav import WebDAVDependency\nfrom dvc.dependency.webdavs import WebDAVSDependency\nfrom dvc.dependency.webhdfs import WebHDFSDependency\nfrom dvc.output.base import BaseOutput\nfrom dvc.scheme import Schemes\n\nfrom ..tree import get_cloud_tree\nfrom .repo import RepoDependency\n\nDEPS = [\n    AzureDependency,\n    GSDependency,\n    HDFSDependency,\n    HTTPDependency,\n    HTTPSDependency,\n    S3Dependency,\n    SSHDependency,\n    WebDAVDependency,\n    WebDAVSDependency,\n    WebHDFSDependency,\n    # NOTE: LocalDependency is the default choice\n]\n\nDEP_MAP = {\n    Schemes.LOCAL: LocalDependency,\n    Schemes.SSH: SSHDependency,\n    Schemes.S3: S3Dependency,\n    Schemes.AZURE: AzureDependency,\n    Schemes.GS: GSDependency,\n    Schemes.HDFS: HDFSDependency,\n    Schemes.HTTP: HTTPDependency,\n    Schemes.HTTPS: HTTPSDependency,\n    Schemes.WEBDAV: WebDAVDependency,\n    Schemes.WEBDAVS: WebDAVSDependency,\n    Schemes.WEBHDFS: WebHDFSDependency,\n}\n\n\n# NOTE: schema for dependencies is basically the same as for outputs, but\n# without output-specific entries like 'cache' (whether or not output is\n# cached, see -o and -O flags for `dvc run`) and 'metric' (whether or not\n# output is a metrics file and how to parse it, see `-M` flag for `dvc run`).\nSCHEMA = output.SCHEMA.copy()\ndel SCHEMA[BaseOutput.PARAM_CACHE]\ndel SCHEMA[BaseOutput.PARAM_METRIC]\ndel SCHEMA[BaseOutput.PARAM_DESC]\nSCHEMA.update(RepoDependency.REPO_SCHEMA)\nSCHEMA.update(ParamsDependency.PARAM_SCHEMA)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_FileMixin_FileMixin.exists.return.self_repo_tree_exists_sel": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_FileMixin_FileMixin.exists.return.self_repo_tree_exists_sel", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 64, "end_line": 93, "span_ids": ["FileMixin.__init__", "FileMixin", "FileMixin.__repr__", "FileMixin.exists", "FileMixin.__hash__", "FileMixin.relpath", "FileMixin.__eq__", "FileMixin.__str__"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class FileMixin:\n    SCHEMA = None\n\n    def __init__(self, repo, path, verify=True, **kwargs):\n        self.repo = repo\n        self.path = path\n        self.verify = verify\n\n    def __repr__(self):\n        return \"{}: {}\".format(\n            self.__class__.__name__, relpath(self.path, self.repo.root_dir)\n        )\n\n    def __hash__(self):\n        return hash(self.path)\n\n    def __eq__(self, other):\n        return self.repo == other.repo and os.path.abspath(\n            self.path\n        ) == os.path.abspath(other.path)\n\n    def __str__(self):\n        return f\"{self.__class__.__name__}: {self.relpath}\"\n\n    @property\n    def relpath(self):\n        return relpath(self.path)\n\n    def exists(self):\n        return self.repo.tree.exists(self.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_PipelineFile._dump_pipeline_file_PipelineFile._dump_pipeline_file.self_repo_scm_track_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_PipelineFile._dump_pipeline_file_PipelineFile._dump_pipeline_file.self_repo_scm_track_file_", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 209, "end_line": 230, "span_ids": ["PipelineFile._dump_pipeline_file"], "tokens": 189}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PipelineFile(FileMixin):\n\n    def _dump_pipeline_file(self, stage):\n        self._check_if_parametrized(stage)\n        stage_data = serialize.to_pipeline_file(stage)\n\n        with modify_yaml(self.path, tree=self.repo.tree) as data:\n            if not data:\n                logger.info(\"Creating '%s'\", self.relpath)\n\n            data[\"stages\"] = data.get(\"stages\", {})\n            existing_entry = stage.name in data[\"stages\"]\n            action = \"Modifying\" if existing_entry else \"Adding\"\n            logger.info(\n                \"%s stage '%s' in '%s'\", action, stage.name, self.relpath\n            )\n\n            if existing_entry:\n                orig_stage_data = data[\"stages\"][stage.name]\n                apply_diff(stage_data[stage.name], orig_stage_data)\n            else:\n                data[\"stages\"].update(stage_data)\n\n        self.repo.scm.track_file(self.relpath)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_Lockfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_Lockfile_", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 272, "end_line": 338, "span_ids": ["Lockfile.merge", "Lockfile.load", "Dvcfile.__new__", "Lockfile", "Dvcfile", "Lockfile.remove_stage", "Lockfile.dump"], "tokens": 408}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Lockfile(FileMixin):\n    from dvc.schema import COMPILED_LOCKFILE_SCHEMA as SCHEMA\n\n    def load(self):\n        if not self.exists():\n            return {}\n\n        data = load_yaml(self.path, tree=self.repo.tree)\n        try:\n            self.validate(data, fname=self.relpath)\n        except StageFileFormatError:\n            raise LockfileCorruptedError(\n                f\"Lockfile '{self.relpath}' is corrupted.\"\n            )\n        return data\n\n    def dump(self, stage, **kwargs):\n        stage_data = serialize.to_lockfile(stage)\n\n        with modify_yaml(self.path, tree=self.repo.tree) as data:\n            if not data:\n                logger.info(\"Generating lock file '%s'\", self.relpath)\n\n            modified = data.get(stage.name, {}) != stage_data.get(\n                stage.name, {}\n            )\n            if modified:\n                logger.info(\"Updating lock file '%s'\", self.relpath)\n            data.update(stage_data)\n\n        if modified:\n            self.repo.scm.track_file(self.relpath)\n\n    def remove_stage(self, stage):\n        if not self.exists():\n            return\n\n        with open(self.path) as f:\n            d = parse_yaml_for_update(f.read(), self.path)\n        self.validate(d, self.path)\n\n        if stage.name not in d:\n            return\n\n        logger.debug(\"Removing '%s' from '%s'\", stage.name, self.path)\n        del d[stage.name]\n\n        if d:\n            dump_yaml(self.path, d)\n        else:\n            self.remove()\n\n    def merge(self, ancestor, other):\n        raise NotImplementedError\n\n\nclass Dvcfile:\n    def __new__(cls, repo, path, **kwargs):\n        assert path\n        assert repo\n\n        _, ext = os.path.splitext(path)\n        if ext in [\".yaml\", \".yml\"]:\n            return PipelineFile(repo, path, **kwargs)\n        # fallback to single stage file for better error messages\n        return SingleStageFile(repo, path, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py__Exceptions_raised_by_t_OutputDuplicationError.__init__.self.output.output": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py__Exceptions_raised_by_t_OutputDuplicationError.__init__.self.output.output", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 43, "span_ids": ["DvcException.__init__", "OutputDuplicationError", "InvalidArgumentError", "DvcException", "OutputDuplicationError.__init__", "docstring"], "tokens": 280}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Exceptions raised by the dvc.\"\"\"\nfrom typing import List\n\nfrom funcy import first\n\nfrom dvc.utils import error_link, format_link, relpath\n\n\nclass DvcException(Exception):\n    \"\"\"Base class for all dvc exceptions.\"\"\"\n\n    def __init__(self, msg, *args):\n        assert msg\n        super().__init__(msg, *args)\n\n\nclass InvalidArgumentError(ValueError, DvcException):\n    \"\"\"Thrown if arguments are invalid.\"\"\"\n\n\nclass OutputDuplicationError(DvcException):\n    \"\"\"Thrown if a file/directory is specified as an output in more than one\n    stage.\n\n    Args:\n        output (unicode): path to the file/directory.\n        stages (list): list of paths to stages.\n    \"\"\"\n\n    def __init__(self, output, stages):\n        assert isinstance(output, str)\n        assert all(hasattr(stage, \"relpath\") for stage in stages)\n        if len(stages) == 1:\n            msg = \"output '{}' is already specified in {}.\".format(\n                output, first(stages)\n            )\n        else:\n            msg = \"output '{}' is already specified in stages:\\n{}\".format(\n                output, \"\\n\".join(f\"\\t- {s.addressing}\" for s in stages),\n            )\n        super().__init__(msg)\n        self.stages = stages\n        self.output = output", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py__get__get.return.LocalOutput_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py__get__get.return.LocalOutput_", "embedding": null, "metadata": {"file_path": "dvc/output/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 75, "end_line": 132, "span_ids": ["_get"], "tokens": 259}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get(\n    stage,\n    p,\n    info=None,\n    cache=True,\n    metric=False,\n    plot=False,\n    persist=False,\n    checkpoint=False,\n    desc=None,\n    isexec=False,\n):\n    parsed = urlparse(p)\n\n    if parsed.scheme == \"remote\":\n        tree = get_cloud_tree(stage.repo, name=parsed.netloc)\n        return OUTS_MAP[tree.scheme](\n            stage,\n            p,\n            info,\n            cache=cache,\n            tree=tree,\n            metric=metric,\n            plot=plot,\n            persist=persist,\n            checkpoint=checkpoint,\n            desc=desc,\n            isexec=isexec,\n        )\n\n    for o in OUTS:\n        if o.supported(p):\n            return o(\n                stage,\n                p,\n                info,\n                cache=cache,\n                tree=None,\n                metric=metric,\n                plot=plot,\n                persist=persist,\n                checkpoint=checkpoint,\n                desc=desc,\n                isexec=isexec,\n            )\n    return LocalOutput(\n        stage,\n        p,\n        info,\n        cache=cache,\n        tree=None,\n        metric=metric,\n        plot=plot,\n        persist=persist,\n        checkpoint=checkpoint,\n        desc=desc,\n        isexec=isexec,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/diff.py_from_dvc_exceptions_impor_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/diff.py_from_dvc_exceptions_impor_", "embedding": null, "metadata": {"file_path": "dvc/repo/metrics/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["imports", "_get_metrics", "diff"], "tokens": 208}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.exceptions import MetricsError\nfrom dvc.utils.diff import diff as _diff\nfrom dvc.utils.diff import format_dict\n\n\ndef _get_metrics(repo, *args, revs=None, **kwargs):\n    try:\n        metrics = repo.metrics.show(*args, **kwargs, revs=revs)\n        return metrics\n    except MetricsError:\n        return {}\n\n\ndef diff(repo, *args, a_rev=None, b_rev=None, **kwargs):\n    if repo.scm.no_commits:\n        return {}\n\n    with_unchanged = kwargs.pop(\"all\", False)\n\n    a_rev = a_rev or \"HEAD\"\n    b_rev = b_rev or \"workspace\"\n\n    metrics = _get_metrics(repo, *args, **kwargs, revs=[a_rev, b_rev])\n    old = metrics.get(a_rev, {})\n    new = metrics.get(b_rev, {})\n\n    return _diff(\n        format_dict(old), format_dict(new), with_unchanged=with_unchanged\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/update.py_Dvcfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/update.py_Dvcfile_", "embedding": null, "metadata": {"file_path": "dvc/repo/update.py", "file_name": "update.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["imports", "update"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from ..dvcfile import Dvcfile\nfrom . import locked\n\n\n@locked\ndef update(self, targets=None, rev=None, recursive=False):\n    if not targets:\n        targets = [None]\n\n    if isinstance(targets, str):\n        targets = [targets]\n\n    stages = set()\n    for target in targets:\n        stages.update(self.stage.collect(target, recursive=recursive))\n\n    for stage in stages:\n        stage.update(rev)\n        dvcfile = Dvcfile(self, stage.path)\n        dvcfile.dump(stage)\n        stages.add(stage)\n\n    return list(stages)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py_json_RWLockFileFormatError.__init__.super___init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/rwlock.py_json_RWLockFileFormatError.__init__.super___init___", "embedding": null, "metadata": {"file_path": "dvc/rwlock.py", "file_name": "rwlock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 34, "span_ids": ["RWLockFileCorruptedError", "imports", "RWLockFileFormatError.__init__", "RWLockFileCorruptedError.__init__", "RWLockFileFormatError"], "tokens": 198}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport os\nfrom collections import defaultdict\nfrom contextlib import contextmanager\n\nfrom voluptuous import Invalid, Optional, Required, Schema\n\nfrom .exceptions import DvcException\nfrom .lock import LockError\nfrom .utils import relpath\n\nINFO_SCHEMA = {Required(\"pid\"): int, Required(\"cmd\"): str}\n\nSCHEMA = Schema(\n    {\n        Optional(\"write\", default={}): {str: INFO_SCHEMA},\n        Optional(\"read\", default={}): {str: [INFO_SCHEMA]},\n    }\n)\n\n\nclass RWLockFileCorruptedError(DvcException):\n    def __init__(self, path):\n        super().__init__(\n            \"Unable to read RWLock-file '{}'. JSON structure is \"\n            \"corrupted\".format(relpath(path))\n        )\n\n\nclass RWLockFileFormatError(DvcException):\n    def __init__(self, path):\n        super().__init__(\n            \"RWLock-file '{}' format error.\".format(relpath(path))\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/schema.py_from_voluptuous_import_An_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/schema.py_from_voluptuous_import_An_", "embedding": null, "metadata": {"file_path": "dvc/schema.py", "file_name": "schema.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 97, "span_ids": ["imports", "impl:19"], "tokens": 831}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from voluptuous import Any, Optional, Required, Schema\n\nfrom dvc import dependency, output\nfrom dvc.hash_info import HashInfo\nfrom dvc.output import CHECKSUMS_SCHEMA, BaseOutput\nfrom dvc.parsing import DO_KWD, FOREACH_KWD, VARS_KWD\nfrom dvc.stage.params import StageParams\n\nSTAGES = \"stages\"\nSINGLE_STAGE_SCHEMA = {\n    StageParams.PARAM_MD5: output.CHECKSUM_SCHEMA,\n    StageParams.PARAM_CMD: Any(str, list, None),\n    StageParams.PARAM_WDIR: Any(str, None),\n    StageParams.PARAM_DEPS: Any([dependency.SCHEMA], None),\n    StageParams.PARAM_OUTS: Any([output.SCHEMA], None),\n    StageParams.PARAM_LOCKED: bool,  # backard compatibility\n    StageParams.PARAM_FROZEN: bool,\n    StageParams.PARAM_META: object,\n    StageParams.PARAM_ALWAYS_CHANGED: bool,\n    StageParams.PARAM_DESC: str,\n}\n\nDATA_SCHEMA = {\n    **CHECKSUMS_SCHEMA,\n    Required(\"path\"): str,\n    HashInfo.PARAM_SIZE: int,\n    HashInfo.PARAM_NFILES: int,\n    BaseOutput.PARAM_ISEXEC: bool,\n}\nLOCK_FILE_STAGE_SCHEMA = {\n    Required(StageParams.PARAM_CMD): Any(str, list),\n    StageParams.PARAM_DEPS: [DATA_SCHEMA],\n    StageParams.PARAM_PARAMS: {str: {str: object}},\n    StageParams.PARAM_OUTS: [DATA_SCHEMA],\n}\nLOCKFILE_SCHEMA = {str: LOCK_FILE_STAGE_SCHEMA}\n\nOUT_PSTAGE_DETAILED_SCHEMA = {\n    str: {\n        BaseOutput.PARAM_CACHE: bool,\n        BaseOutput.PARAM_PERSIST: bool,\n        BaseOutput.PARAM_CHECKPOINT: bool,\n        BaseOutput.PARAM_DESC: str,\n    }\n}\n\nPLOT_PROPS = {\n    BaseOutput.PARAM_PLOT_TEMPLATE: str,\n    BaseOutput.PARAM_PLOT_X: str,\n    BaseOutput.PARAM_PLOT_Y: str,\n    BaseOutput.PARAM_PLOT_X_LABEL: str,\n    BaseOutput.PARAM_PLOT_Y_LABEL: str,\n    BaseOutput.PARAM_PLOT_TITLE: str,\n    BaseOutput.PARAM_PLOT_HEADER: bool,\n}\nPLOT_PROPS_SCHEMA = {\n    **OUT_PSTAGE_DETAILED_SCHEMA[str],\n    **PLOT_PROPS,\n}\nPLOT_PSTAGE_SCHEMA = {str: Any(PLOT_PROPS_SCHEMA, [PLOT_PROPS_SCHEMA])}\n\nPARAM_PSTAGE_NON_DEFAULT_SCHEMA = {str: [str]}\n\nVARS_SCHEMA = [str, dict]\n\nSTAGE_DEFINITION = {\n    StageParams.PARAM_CMD: Any(str, list),\n    Optional(StageParams.PARAM_WDIR): str,\n    Optional(StageParams.PARAM_DEPS): [str],\n    Optional(StageParams.PARAM_PARAMS): [Any(str, dict)],\n    Optional(VARS_KWD): VARS_SCHEMA,\n    Optional(StageParams.PARAM_FROZEN): bool,\n    Optional(StageParams.PARAM_META): object,\n    Optional(StageParams.PARAM_DESC): str,\n    Optional(StageParams.PARAM_ALWAYS_CHANGED): bool,\n    Optional(StageParams.PARAM_OUTS): [Any(str, OUT_PSTAGE_DETAILED_SCHEMA)],\n    Optional(StageParams.PARAM_METRICS): [\n        Any(str, OUT_PSTAGE_DETAILED_SCHEMA)\n    ],\n    Optional(StageParams.PARAM_PLOTS): [Any(str, PLOT_PSTAGE_SCHEMA)],\n}\n\nFOREACH_IN = {\n    Required(FOREACH_KWD): Any(dict, list, str),\n    Required(DO_KWD): STAGE_DEFINITION,\n}\nSINGLE_PIPELINE_STAGE_SCHEMA = {str: Any(STAGE_DEFINITION, FOREACH_IN)}\nMULTI_STAGE_SCHEMA = {\n    STAGES: SINGLE_PIPELINE_STAGE_SCHEMA,\n    VARS_KWD: VARS_SCHEMA,\n}\n\nCOMPILED_SINGLE_STAGE_SCHEMA = Schema(SINGLE_STAGE_SCHEMA)\nCOMPILED_MULTI_STAGE_SCHEMA = Schema(MULTI_STAGE_SCHEMA)\nCOMPILED_LOCK_FILE_STAGE_SCHEMA = Schema(LOCK_FILE_STAGE_SCHEMA)\nCOMPILED_LOCKFILE_SCHEMA = Schema(LOCKFILE_SCHEMA)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_logging__get_stage_hash.return._get_cache_hash_to_single": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_logging__get_stage_hash.return._get_cache_hash_to_single", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 57, "span_ids": ["RunCacheNotFoundError.__init__", "_get_stage_hash", "_get_cache_hash", "imports", "_can_hash", "RunCacheNotFoundError"], "tokens": 363}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport tempfile\nfrom contextlib import contextmanager\n\nfrom funcy import cached_property, first\nfrom voluptuous import Invalid\n\nfrom dvc.exceptions import DvcException\nfrom dvc.path_info import PathInfo\nfrom dvc.remote.base import _log_exceptions\nfrom dvc.schema import COMPILED_LOCK_FILE_STAGE_SCHEMA\nfrom dvc.utils import dict_sha256, relpath\nfrom dvc.utils.serialize import YAMLFileCorruptedError, dump_yaml, load_yaml\n\nfrom .loader import StageLoader\nfrom .serialize import to_single_stage_lockfile\n\nlogger = logging.getLogger(__name__)\n\n\nclass RunCacheNotFoundError(DvcException):\n    def __init__(self, stage):\n        super().__init__(f\"No run-cache for {stage.addressing}\")\n\n\ndef _get_cache_hash(cache, key=False):\n    from dvc.hash_info import HashInfo\n\n    if key:\n        cache[\"outs\"] = [out[\"path\"] for out in cache.get(\"outs\", [])]\n    return dict_sha256(\n        cache, exclude=[HashInfo.PARAM_SIZE, HashInfo.PARAM_NFILES]\n    )\n\n\ndef _can_hash(stage):\n    if stage.is_callback or stage.always_changed:\n        return False\n\n    if not all([stage.cmd, stage.deps, stage.outs]):\n        return False\n\n    for dep in stage.deps:\n        if not (dep.scheme == \"local\" and dep.def_path and dep.get_hash()):\n            return False\n\n    for out in stage.outs:\n        if out.scheme != \"local\" or not out.def_path or out.persist:\n            return False\n\n    return True\n\n\ndef _get_stage_hash(stage):\n    assert _can_hash(stage)\n    return _get_cache_hash(to_single_stage_lockfile(stage), key=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache_StageCache._cache_type_copy.try_.finally_.self.repo.cache.local.cache_types.cache_types": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache_StageCache._cache_type_copy.try_.finally_.self.repo.cache.local.cache_types.cache_types", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 116, "span_ids": ["StageCache.__init__", "StageCache._create_stage", "StageCache._cache_type_copy", "StageCache._load_cache", "StageCache._get_cache_dir", "StageCache.tree", "StageCache.cache_dir", "StageCache._load", "StageCache._get_cache_path", "StageCache"], "tokens": 425}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageCache:\n    def __init__(self, repo):\n        self.repo = repo\n\n    @cached_property\n    def cache_dir(self):\n        return os.path.join(self.repo.cache.local.cache_dir, \"runs\")\n\n    @property\n    def tree(self):\n        return self.repo.cache.local.tree\n\n    def _get_cache_dir(self, key):\n        return os.path.join(self.cache_dir, key[:2], key)\n\n    def _get_cache_path(self, key, value):\n        return os.path.join(self._get_cache_dir(key), value)\n\n    def _load_cache(self, key, value):\n        path = self._get_cache_path(key, value)\n\n        try:\n            return COMPILED_LOCK_FILE_STAGE_SCHEMA(load_yaml(path))\n        except FileNotFoundError:\n            return None\n        except (YAMLFileCorruptedError, Invalid):\n            logger.warning(\"corrupted cache file '%s'.\", relpath(path))\n            os.unlink(path)\n            return None\n\n    def _load(self, stage):\n        key = _get_stage_hash(stage)\n        if not key:\n            return None\n\n        cache_dir = self._get_cache_dir(key)\n        if not os.path.exists(cache_dir):\n            return None\n\n        for value in os.listdir(cache_dir):\n            cache = self._load_cache(key, value)\n            if cache:\n                return cache\n\n        return None\n\n    def _create_stage(self, cache, wdir=None):\n        from . import PipelineStage, create_stage\n\n        stage = create_stage(\n            PipelineStage,\n            repo=self.repo,\n            path=\"dvc.yaml\",\n            cmd=cache[\"cmd\"],\n            wdir=wdir,\n            outs=[out[\"path\"] for out in cache[\"outs\"]],\n            external=True,\n        )\n        StageLoader.fill_from_lock(stage, cache)\n        return stage\n\n    @contextmanager\n    def _cache_type_copy(self):\n        cache_types = self.repo.cache.local.cache_types\n        self.repo.cache.local.cache_types = [\"copy\"]\n        try:\n            yield\n        finally:\n            self.repo.cache.local.cache_types = cache_types", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache._uncached_outs_StageCache._uncached_outs.with_self__cache_type_cop.for_out_in_cached_stage_o.if_out_def_path_in_outs_n.yield_out": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache._uncached_outs_StageCache._uncached_outs.with_self__cache_type_cop.for_out_in_cached_stage_o.if_out_def_path_in_outs_n.yield_out", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 106, "end_line": 120, "span_ids": ["StageCache._uncached_outs"], "tokens": 140}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageCache:\n\n    def _uncached_outs(self, stage, cache):\n        # NOTE: using temporary stage to avoid accidentally modifying original\n        # stage and to workaround `commit/checkout` not working for uncached\n        # outputs.\n        cached_stage = self._create_stage(cache, wdir=stage.wdir)\n\n        outs_no_cache = [\n            out.def_path for out in stage.outs if not out.use_cache\n        ]\n\n        # NOTE: using copy link to make it look like a git-tracked file\n        with self._cache_type_copy():\n            for out in cached_stage.outs:\n                if out.def_path in outs_no_cache:\n                    yield out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache.push_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache.push_", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 179, "end_line": 207, "span_ids": ["StageCache.pull", "StageCache.get_used_cache", "StageCache.push"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageCache:\n\n    def push(self, remote):\n        remote = self.repo.cloud.get_remote(remote)\n        return self._transfer(\n            _log_exceptions(remote.tree.upload, \"upload\"),\n            self.repo.cache.local.tree,\n            remote.tree,\n        )\n\n    def pull(self, remote):\n        remote = self.repo.cloud.get_remote(remote)\n        return self._transfer(\n            _log_exceptions(remote.tree.download, \"download\"),\n            remote.tree,\n            self.repo.cache.local.tree,\n        )\n\n    def get_used_cache(self, used_run_cache, *args, **kwargs):\n        from dvc.cache import NamedCache\n\n        cache = NamedCache()\n\n        for key, value in used_run_cache:\n            entry = self._load_cache(key, value)\n            if not entry:\n                continue\n            stage = self._create_stage(entry)\n            cache.update(stage.get_used_cache(*args, **kwargs))\n        return cache", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_SingleStageLoader_SingleStageLoader.__getitem__.return.self_load_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_SingleStageLoader_SingleStageLoader.__getitem__.return.self_load_stage_", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 105, "end_line": 122, "span_ids": ["SingleStageLoader.__getitem__", "SingleStageLoader", "SingleStageLoader.__init__"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SingleStageLoader(Mapping):\n    def __init__(self, dvcfile, stage_data, stage_text=None):\n        self.dvcfile = dvcfile\n        self.stage_data = stage_data or {}\n        self.stage_text = stage_text\n\n    def __getitem__(self, item):\n        if item:\n            logger.warning(\n                \"Ignoring name '%s' for single stage in '%s'.\",\n                item,\n                self.dvcfile,\n            )\n        # during `load`, we remove attributes from stage data, so as to\n        # not duplicate, therefore, for MappingView, we need to deepcopy.\n        return self.load_stage(\n            self.dvcfile, deepcopy(self.stage_data), self.stage_text\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_SingleStageLoader.load_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_SingleStageLoader.load_stage_", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 124, "end_line": 143, "span_ids": ["SingleStageLoader.__len__", "SingleStageLoader.load_stage", "SingleStageLoader.__iter__", "SingleStageLoader.__contains__"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SingleStageLoader(Mapping):\n\n    @classmethod\n    def load_stage(cls, dvcfile, d, stage_text):\n        path, wdir = resolve_paths(dvcfile.path, d.get(Stage.PARAM_WDIR))\n        stage = loads_from(Stage, dvcfile.repo, path, wdir, d)\n        stage._stage_text = stage_text  # noqa, pylint:disable=protected-access\n        stage.deps = dependency.loadd_from(\n            stage, d.get(Stage.PARAM_DEPS) or []\n        )\n        stage.outs = output.loadd_from(stage, d.get(Stage.PARAM_OUTS) or [])\n        return stage\n\n    def __iter__(self):\n        return iter([None])\n\n    def __contains__(self, item):\n        return False\n\n    def __len__(self):\n        return 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_bytes_hash_is_binary.return.getattr_sys_frozen_Fa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_bytes_hash_is_binary.return.getattr_sys_frozen_Fa", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 78, "end_line": 148, "span_ids": ["to_chunks", "is_binary", "dict_filter", "_split", "_to_chunks_by_chunks_number", "dict_sha256", "bytes_hash", "dict_md5", "dict_hash"], "tokens": 449}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def bytes_hash(byts, typ):\n    hasher = getattr(hashlib, typ)()\n    hasher.update(byts)\n    return hasher.hexdigest()\n\n\ndef dict_filter(d, exclude=()):\n    \"\"\"\n    Exclude specified keys from a nested dict\n    \"\"\"\n\n    if isinstance(d, list):\n        return [dict_filter(e, exclude) for e in d]\n\n    if isinstance(d, dict):\n        return {\n            k: dict_filter(v, exclude)\n            for k, v in d.items()\n            if k not in exclude\n        }\n\n    return d\n\n\ndef dict_hash(d, typ, exclude=()):\n    filtered = dict_filter(d, exclude)\n    byts = json.dumps(filtered, sort_keys=True).encode(\"utf-8\")\n    return bytes_hash(byts, typ)\n\n\ndef dict_md5(d, **kwargs):\n    return dict_hash(d, \"md5\", **kwargs)\n\n\ndef dict_sha256(d, **kwargs):\n    return dict_hash(d, \"sha256\", **kwargs)\n\n\ndef _split(list_to_split, chunk_size):\n    return [\n        list_to_split[i : i + chunk_size]\n        for i in range(0, len(list_to_split), chunk_size)\n    ]\n\n\ndef _to_chunks_by_chunks_number(list_to_split, num_chunks):\n    chunk_size = int(math.ceil(float(len(list_to_split)) / num_chunks))\n\n    if len(list_to_split) == 1:\n        return [list_to_split]\n\n    if chunk_size == 0:\n        chunk_size = 1\n\n    return _split(list_to_split, chunk_size)\n\n\ndef to_chunks(list_to_split, num_chunks=None, chunk_size=None):\n    if (num_chunks and chunk_size) or (not num_chunks and not chunk_size):\n        raise ValueError(\n            \"Only one among `num_chunks` or `chunk_size` must be defined.\"\n        )\n    if chunk_size:\n        return _split(list_to_split, chunk_size)\n    return _to_chunks_by_chunks_number(list_to_split, num_chunks)\n\n\n# NOTE: Check if we are in a bundle\n# https://pythonhosted.org/PyInstaller/runtime-information.html\ndef is_binary():\n    return getattr(sys, \"frozen\", False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_errno_get_inode.return.inode": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/fs.py_errno_get_inode.return.inode", "embedding": null, "metadata": {"file_path": "dvc/utils/fs.py", "file_name": "fs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["imports", "get_inode", "fs_copy"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport logging\nimport os\nimport shutil\nimport stat\nimport sys\n\nimport nanotime\nfrom shortuuid import uuid\n\nfrom dvc.exceptions import DvcException, FileOwnershipError\nfrom dvc.system import System\nfrom dvc.utils import dict_md5\n\nlogger = logging.getLogger(__name__)\n\nLOCAL_CHUNK_SIZE = 2 ** 20  # 1 MB\n\n\ndef fs_copy(src, dst):\n    if os.path.isdir(src):\n        shutil.copytree(src, dst)\n    else:\n        shutil.copy2(src, dst)\n\n\ndef get_inode(path):\n    inode = System.inode(path)\n    logger.trace(\"Path '%s' inode '%d'\", path, inode)\n    return inode", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/humanize.py_from_funcy_import_is_seq_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/humanize.py_from_funcy_import_is_seq_", "embedding": null, "metadata": {"file_path": "dvc/utils/humanize.py", "file_name": "humanize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 28, "span_ids": ["join", "imports", "get_summary"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from funcy import is_seq\n\n\ndef join(words):\n    words = list(words)\n    if not words:\n        return \"\"\n\n    return (\n        \"{before} and {after}\".format(\n            before=\", \".join(words[:-1]), after=words[-1],\n        )\n        if len(words) > 1\n        else words[0]\n    )\n\n\ndef get_summary(stats):\n    status = (\n        (state, len(data) if is_seq(data) else data)\n        for state, data in stats\n        if data\n    )\n    return join(\n        \"{} file{} {}\".format(num, \"s\" if num > 1 else \"\", state)\n        for state, num in status\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_with_unchanged_test_diff_with_unchanged.assert_dvc_params_diff_a_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_with_unchanged_test_diff_with_unchanged.assert_dvc_params_diff_a_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 104, "end_line": 118, "span_ids": ["test_diff_with_unchanged"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_with_unchanged(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\\nxyz: val\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo,xyz\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"bar\")\n\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: baz\\nxyz: val\", commit=\"baz\")\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: qux\\nxyz: val\", commit=\"qux\")\n\n    assert dvc.params.diff(a_rev=\"HEAD~2\", all=True) == {\n        \"params.yaml\": {\n            \"foo\": {\"old\": \"bar\", \"new\": \"qux\"},\n            \"xyz\": {\"old\": \"val\", \"new\": \"val\"},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_pipeline_tracked_params_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_pipeline_tracked_params_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 83, "end_line": 107, "span_ids": ["test_pipeline_tracked_params", "test_show_no_repo"], "tokens": 254}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pipeline_tracked_params(tmp_dir, scm, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE\n\n    tmp_dir.gen({\"foo\": \"foo\", \"params.yaml\": \"foo: bar\\nxyz: val\"})\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\", params=[\"foo,xyz\"])\n    scm.add([\"params.yaml\", PIPELINE_FILE])\n    scm.commit(\"add stage\")\n\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: baz\\nxyz: val\", commit=\"baz\")\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: qux\\nxyz: val\", commit=\"qux\")\n\n    assert dvc.params.show(revs=[\"master\"]) == {\n        \"master\": {\"params.yaml\": {\"foo\": \"qux\", \"xyz\": \"val\"}}\n    }\n\n\ndef test_show_no_repo(tmp_dir):\n    tmp_dir.gen({\"foo\": \"foo\", \"params_file.yaml\": \"foo: bar\\nxyz: val\"})\n\n    dvc = Repo(uninitialized=True)\n\n    assert dvc.params.show(targets=[\"params_file.yaml\"]) == {\n        \"\": {\"params_file.yaml\": {\"foo\": \"bar\", \"xyz\": \"val\"}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_optimization_for_hardlink_on_empty_files_test_add_optimization_for_hardlink_on_empty_files.for_stage_in_stages_.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_optimization_for_hardlink_on_empty_files_test_add_optimization_for_hardlink_on_empty_files.for_stage_in_stages_.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 773, "end_line": 792, "span_ids": ["test_add_optimization_for_hardlink_on_empty_files"], "tokens": 213}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_optimization_for_hardlink_on_empty_files(tmp_dir, dvc, mocker):\n    dvc.cache.local.cache_types = [\"hardlink\"]\n    tmp_dir.gen({\"foo\": \"\", \"bar\": \"\", \"lorem\": \"lorem\", \"ipsum\": \"ipsum\"})\n    m = mocker.spy(LocalTree, \"is_hardlink\")\n    stages = dvc.add([\"foo\", \"bar\", \"lorem\", \"ipsum\"])\n\n    assert m.call_count == 1\n    assert m.call_args != call(tmp_dir / \"foo\")\n    assert m.call_args != call(tmp_dir / \"bar\")\n\n    for stage in stages[:2]:\n        # hardlinks are not created for empty files\n        assert not System.is_hardlink(stage.outs[0].path_info)\n\n    for stage in stages[2:]:\n        assert System.is_hardlink(stage.outs[0].path_info)\n\n    for stage in stages:\n        assert os.path.exists(stage.path)\n        assert os.path.exists(stage.outs[0].cache_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pull_external_dvc_imports_recurse_list_dir.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pull_external_dvc_imports_recurse_list_dir.return._", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 314, "end_line": 352, "span_ids": ["recurse_list_dir", "clean", "test_pull_external_dvc_imports"], "tokens": 315}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_external_dvc_imports(tmp_dir, dvc, scm, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({\"dir\": {\"bar\": \"bar\"}}, commit=\"second\")\n        erepo_dir.dvc_gen(\"foo\", \"foo\", commit=\"first\")\n\n        os.remove(\"foo\")\n        shutil.rmtree(\"dir\")\n\n    dvc.imp(os.fspath(erepo_dir), \"foo\")\n    dvc.imp(os.fspath(erepo_dir), \"dir\", out=\"new_dir\", rev=\"HEAD~\")\n\n    assert dvc.pull()[\"fetched\"] == 0\n\n    clean([\"foo\", \"new_dir\"], dvc)\n\n    assert dvc.pull(force=True)[\"fetched\"] == 2\n\n    assert (tmp_dir / \"foo\").exists()\n    assert (tmp_dir / \"foo\").read_text() == \"foo\"\n\n    assert (tmp_dir / \"new_dir\").exists()\n    assert (tmp_dir / \"new_dir\" / \"bar\").read_text() == \"bar\"\n\n\ndef clean(outs, dvc=None):\n    if dvc:\n        outs = outs + [dvc.cache.local.cache_dir]\n    for path in outs:\n        print(path)\n        remove(path)\n    if dvc:\n        os.makedirs(dvc.cache.local.cache_dir, exist_ok=True)\n        clean_repos()\n\n\ndef recurse_list_dir(d):\n    return [\n        os.path.join(d, f) for _, _, filenames in os.walk(d) for f in filenames\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_dvc_pull_pipeline_stages_test_dvc_pull_pipeline_stages.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_dvc_pull_pipeline_stages_test_dvc_pull_pipeline_stages.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 355, "end_line": 383, "span_ids": ["test_dvc_pull_pipeline_stages"], "tokens": 295}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dvc_pull_pipeline_stages(tmp_dir, dvc, run_copy, local_remote):\n    (stage0,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"bar\", single_stage=True)\n    stage2 = run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n    dvc.push()\n\n    outs = [\"foo\", \"bar\", \"foobar\"]\n\n    clean(outs, dvc)\n    dvc.pull()\n    assert all((tmp_dir / file).exists() for file in outs)\n\n    for out, stage in zip(outs, [stage0, stage1, stage2]):\n        for target in [stage.addressing, out]:\n            clean(outs, dvc)\n            stats = dvc.pull([target])\n            assert stats[\"fetched\"] == 1\n            assert stats[\"added\"] == [out]\n            assert os.path.exists(out)\n            assert not any(os.path.exists(out) for out in set(outs) - {out})\n\n    clean(outs, dvc)\n    stats = dvc.pull([stage2.addressing], with_deps=True)\n    assert len(stats[\"added\"]) == 3\n    assert set(stats[\"added\"]) == set(outs)\n\n    clean(outs, dvc)\n    stats = dvc.pull([os.curdir], recursive=True)\n    assert set(stats[\"added\"]) == set(outs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pipeline_file_target_ops_test_pipeline_file_target_ops.None_1.dvc_pull_dvc_yaml_Stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pipeline_file_target_ops_test_pipeline_file_target_ops.None_1.dvc_pull_dvc_yaml_Stage", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 386, "end_line": 429, "span_ids": ["test_pipeline_file_target_ops"], "tokens": 397}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pipeline_file_target_ops(tmp_dir, dvc, run_copy, local_remote):\n    path = local_remote.url\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", single_stage=True)\n\n    tmp_dir.dvc_gen(\"lorem\", \"lorem\")\n    run_copy(\"lorem\", \"lorem2\", name=\"copy-lorem-lorem2\")\n\n    tmp_dir.dvc_gen(\"ipsum\", \"ipsum\")\n    run_copy(\"ipsum\", \"baz\", name=\"copy-ipsum-baz\")\n\n    outs = [\"foo\", \"bar\", \"lorem\", \"ipsum\", \"baz\", \"lorem2\"]\n\n    remove(dvc.stage_cache.cache_dir)\n\n    dvc.push()\n\n    outs = [\"foo\", \"bar\", \"lorem\", \"ipsum\", \"baz\", \"lorem2\"]\n\n    # each one's a copy of other, hence 3\n    assert len(recurse_list_dir(path)) == 3\n\n    clean(outs, dvc)\n    assert set(dvc.pull([\"dvc.yaml\"])[\"added\"]) == {\"lorem2\", \"baz\"}\n\n    clean(outs, dvc)\n    assert set(dvc.pull()[\"added\"]) == set(outs)\n\n    # clean everything in remote and push\n    from tests.dir_helpers import TmpDir\n\n    clean(TmpDir(path).iterdir())\n    dvc.push([\"dvc.yaml:copy-ipsum-baz\"])\n    assert len(recurse_list_dir(path)) == 1\n\n    clean(TmpDir(path).iterdir())\n    dvc.push([\"dvc.yaml\"])\n    assert len(recurse_list_dir(path)) == 2\n\n    with pytest.raises(StageNotFound):\n        dvc.push([\"dvc.yaml:StageThatDoesNotExist\"])\n\n    with pytest.raises(StageNotFound):\n        dvc.pull([\"dvc.yaml:StageThatDoesNotExist\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_push_stats_test_push_stats.assert_msg_in_caplog_text": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_push_stats_test_push_stats.assert_msg_in_caplog_text", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 432, "end_line": 446, "span_ids": ["test_push_stats"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"fs, msg\",\n    [\n        ({\"foo\": \"foo\", \"bar\": \"bar\"}, \"2 files pushed\"),\n        ({\"foo\": \"foo\"}, \"1 file pushed\"),\n        ({}, \"Everything is up to date\"),\n    ],\n)\ndef test_push_stats(tmp_dir, dvc, fs, msg, caplog, local_remote):\n    tmp_dir.dvc_gen(fs)\n\n    caplog.clear()\n    with caplog.at_level(level=logging.INFO, logger=\"dvc\"):\n        main([\"push\"])\n    assert msg in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_fetch_stats_test_fetch_stats.assert_msg_in_caplog_text": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_fetch_stats_test_fetch_stats.assert_msg_in_caplog_text", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 449, "end_line": 464, "span_ids": ["test_fetch_stats"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"fs, msg\",\n    [\n        ({\"foo\": \"foo\", \"bar\": \"bar\"}, \"2 files fetched\"),\n        ({\"foo\": \"foo\"}, \"1 file fetched\"),\n        ({}, \"Everything is up to date.\"),\n    ],\n)\ndef test_fetch_stats(tmp_dir, dvc, fs, msg, caplog, local_remote):\n    tmp_dir.dvc_gen(fs)\n    dvc.push()\n    clean(list(fs.keys()), dvc)\n    caplog.clear()\n    with caplog.at_level(level=logging.INFO, logger=\"dvc\"):\n        main([\"fetch\"])\n    assert msg in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_load_all_multistage_test_load_all_multistage.assert_set_Dvcfile_dvc_P": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_load_all_multistage_test_load_all_multistage.assert_set_Dvcfile_dvc_P", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 77, "end_line": 98, "span_ids": ["test_load_all_multistage"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_all_multistage(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage1 = dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        metrics=[\"foo2\"],\n        always_changed=True,\n    )\n    stages = Dvcfile(dvc, PIPELINE_FILE).stages.values()\n    assert len(stages) == 1\n    assert list(stages) == [stage1]\n\n    tmp_dir.gen(\"bar\", \"bar\")\n    stage2 = dvc.run(\n        cmd=\"cp bar bar2\",\n        deps=[\"bar\"],\n        name=\"copy-bar-bar2\",\n        metrics=[\"bar2\"],\n        always_changed=True,\n    )\n    assert set(Dvcfile(dvc, PIPELINE_FILE).stages.values()) == {stage2, stage1}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_load_all_singlestage_test_try_get_single_stage_from_pipeline_file.with_pytest_raises_DvcExc.assert_Dvcfile_dvc_PIPEL": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_load_all_singlestage_test_try_get_single_stage_from_pipeline_file.with_pytest_raises_DvcExc.assert_Dvcfile_dvc_PIPEL", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 105, "end_line": 134, "span_ids": ["test_load_all_singlestage", "test_try_get_single_stage_from_pipeline_file"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_all_singlestage(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage1 = dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        metrics=[\"foo2\"],\n        always_changed=True,\n        single_stage=True,\n    )\n    dvcfile = Dvcfile(dvc, \"foo2.dvc\")\n    assert isinstance(dvcfile, SingleStageFile)\n    assert len(dvcfile.stages) == 1\n    stages = dvcfile.stages.values()\n    assert len(stages) == 1\n    assert list(stages) == [stage1]\n\n\ndef test_try_get_single_stage_from_pipeline_file(tmp_dir, dvc):\n    from dvc.dvcfile import DvcException\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        metrics=[\"foo2\"],\n        always_changed=True,\n    )\n    with pytest.raises(DvcException):\n        assert Dvcfile(dvc, PIPELINE_FILE).stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_without_workspace_on_tags_branches_commits_test_gc_cloud_positive.for_flag_in_cw_ca_.assert_main_gc_vf_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_without_workspace_on_tags_branches_commits_test_gc_cloud_positive.for_flag_in_cw_ca_.assert_main_gc_vf_", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 258, "end_line": 303, "span_ids": ["test_gc_without_workspace_on_tags_branches_commits", "test_gc_with_possible_args_positive", "test_gc_without_workspace", "test_gc_cloud_without_any_specifier", "test_gc_cloud_positive"], "tokens": 408}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_without_workspace_on_tags_branches_commits(tmp_dir, dvc):\n    dvc.gc(force=True, all_tags=True)\n    dvc.gc(force=True, all_commits=True)\n    dvc.gc(force=False, all_branches=True)\n\n    # even if workspace is disabled, and others are enabled, assume as if\n    # workspace is enabled.\n    dvc.gc(force=False, all_branches=True, all_commits=False, workspace=False)\n\n\ndef test_gc_without_workspace(tmp_dir, dvc, caplog):\n    with caplog.at_level(logging.WARNING, logger=\"dvc\"):\n        assert main([\"gc\", \"-vf\"]) == 255\n\n    assert (\n        \"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags` \"\n        \"`--all-experiments` or `--all-commits` needs to be set.\"\n    ) in caplog.text\n\n\ndef test_gc_cloud_without_any_specifier(tmp_dir, dvc, caplog):\n    with caplog.at_level(logging.WARNING, logger=\"dvc\"):\n        assert main([\"gc\", \"-cvf\"]) == 255\n\n    assert (\n        \"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags` \"\n        \"`--all-experiments` or `--all-commits` needs to be set.\"\n    ) in caplog.text\n\n\ndef test_gc_with_possible_args_positive(tmp_dir, dvc):\n    for flag in [\n        \"-w\",\n        \"-a\",\n        \"-T\",\n        \"--all-commits\",\n        \"-aT\",\n        \"-wa\",\n        \"-waT\",\n    ]:\n        assert main([\"gc\", \"-vf\", flag]) == 0\n\n\ndef test_gc_cloud_positive(tmp_dir, dvc, tmp_path_factory, local_remote):\n    for flag in [\"-cw\", \"-ca\", \"-cT\", \"-caT\", \"-cwT\"]:\n        assert main([\"gc\", \"-vf\", flag]) == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_cloud_remove_order_test_gc_cloud_remove_order.for_args_in_mocked_remove.assert_checksum_endswith_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_cloud_remove_order_test_gc_cloud_remove_order.for_args_in_mocked_remove.assert_checksum_endswith_", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 305, "end_line": 330, "span_ids": ["test_gc_cloud_remove_order"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_cloud_remove_order(tmp_dir, scm, dvc, tmp_path_factory, mocker):\n    storage = os.fspath(tmp_path_factory.mktemp(\"test_remote_base\"))\n    dvc.config[\"remote\"][\"local_remote\"] = {\"url\": storage}\n    dvc.config[\"core\"][\"remote\"] = \"local_remote\"\n\n    (standalone, dir1, dir2) = tmp_dir.dvc_gen(\n        {\n            \"file1\": \"standalone\",\n            \"dir1\": {\"file2\": \"file2\"},\n            \"dir2\": {\"file3\": \"file3\", \"file4\": \"file4\"},\n        }\n    )\n    dvc.push()\n    dvc.remove(standalone.relpath)\n    dvc.remove(dir1.relpath)\n    dvc.remove(dir2.relpath)\n    dvc.gc(workspace=True)\n\n    mocked_remove = mocker.patch.object(LocalTree, \"remove\", autospec=True)\n    dvc.gc(workspace=True, cloud=True)\n    assert len(mocked_remove.mock_calls) == 8\n    # dir (and unpacked dir) should be first 4 checksums removed from\n    # the remote\n    for args in mocked_remove.call_args_list[:4]:\n        checksum = str(args[0][1])\n        assert checksum.endswith(\".dir\") or checksum.endswith(\".dir.unpacked\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_url_positive_test_get_url_git_only_repo.with_caplog_at_level_logg.assert_failed_to_show_UR": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_url_positive_test_get_url_git_only_repo.with_caplog_at_level_logg.assert_failed_to_show_UR", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 204, "end_line": 237, "span_ids": ["test_get_url_not_existing", "test_get_url_positive", "test_get_url_git_only_repo"], "tokens": 271}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_url_positive(tmp_dir, erepo_dir, caplog, local_cloud):\n    erepo_dir.add_remote(config=local_cloud.config)\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo\")\n    erepo_dir.dvc.push()\n\n    caplog.clear()\n    with caplog.at_level(logging.ERROR, logger=\"dvc\"):\n        assert main([\"get\", os.fspath(erepo_dir), \"foo\", \"--show-url\"]) == 0\n        assert caplog.text == \"\"\n\n\ndef test_get_url_not_existing(tmp_dir, erepo_dir, caplog):\n    with caplog.at_level(logging.ERROR, logger=\"dvc\"):\n        assert (\n            main(\n                [\n                    \"get\",\n                    os.fspath(erepo_dir),\n                    \"not-existing-file\",\n                    \"--show-url\",\n                ]\n            )\n            == 1\n        )\n        assert \"failed to show URL\" in caplog.text\n\n\ndef test_get_url_git_only_repo(tmp_dir, scm, caplog):\n    tmp_dir.scm_gen({\"foo\": \"foo\"}, commit=\"initial\")\n\n    with caplog.at_level(logging.ERROR):\n        assert main([\"get\", os.fspath(tmp_dir), \"foo\", \"--show-url\"]) == 1\n        assert \"failed to show URL\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_deps_outs_are_sorted_by_path_test_deps_outs_are_sorted_by_path.assert_list_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_deps_outs_are_sorted_by_path_test_deps_outs_are_sorted_by_path.assert_list_", "embedding": null, "metadata": {"file_path": "tests/func/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 34, "end_line": 59, "span_ids": ["test_deps_outs_are_sorted_by_path"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_deps_outs_are_sorted_by_path(tmp_dir, dvc, run_head):\n    tmp_dir.gen(FS_STRUCTURE)\n    deps = [\"foo\", \"bar\", \"foobar\"]\n    run_head(*deps, name=\"copy-first-line\")\n\n    initial_content = read_lock_file()\n    lock = initial_content[\"copy-first-line\"]\n\n    # lock stage key order:\n    assert list(lock.keys()) == [\"cmd\", \"deps\", \"outs\"]\n\n    # `path` key appear first and then the `md5`\n    assert all(\n        list(dep.keys()) == [\"path\", \"md5\", \"size\"] for dep in lock[\"deps\"]\n    )\n    assert all(\n        list(out.keys()) == [\"path\", \"md5\", \"size\"] for out in lock[\"outs\"]\n    )\n\n    # deps are always sorted by the file path naming\n    assert list(map(itemgetter(\"path\"), lock[\"deps\"])) == sorted(deps)\n\n    # outs are too\n    assert list(\n        map(itemgetter(\"path\"), initial_content[\"copy-first-line\"][\"outs\"])\n    ) == [d + \"-1\" for d in sorted(deps)]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_order_is_preserved_when_pipeline_order_changes_test_order_is_preserved_when_pipeline_order_changes.for_reverse_items_in_reve.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_order_is_preserved_when_pipeline_order_changes_test_order_is_preserved_when_pipeline_order_changes.for_reverse_items_in_reve.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 88, "end_line": 112, "span_ids": ["test_order_is_preserved_when_pipeline_order_changes"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_order_is_preserved_when_pipeline_order_changes(\n    tmp_dir, dvc, run_head\n):\n    tmp_dir.gen(FS_STRUCTURE)\n    deps = [\"foo\", \"bar\", \"foobar\"]\n    stage = run_head(*deps, name=\"copy-first-line\")\n\n    initial_content = read_lock_file()\n    # reverse order of stage.outs and dump to the pipeline file\n    # then, again change stage.deps and dump to the pipeline file\n    reversal = stage.outs.reverse, stage.deps.reverse\n    for reverse_items in reversal:\n        reverse_items()\n        stage.dvcfile._dump_pipeline_file(stage)\n\n        # we only changed the order, should not reproduce\n        assert not dvc.reproduce(stage.addressing)\n\n        new_lock_content = read_lock_file()\n        assert_eq_lockfile(new_lock_content, initial_content)\n\n        (tmp_dir / PIPELINE_LOCK).unlink()\n        assert dvc.reproduce(stage.addressing) == [stage]\n        new_lock_content = read_lock_file()\n        assert_eq_lockfile(new_lock_content, initial_content)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_cmd_changes_other_orders_are_preserved_test_cmd_changes_other_orders_are_preserved.assert_eq_lockfile_new_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_cmd_changes_other_orders_are_preserved_test_cmd_changes_other_orders_are_preserved.assert_eq_lockfile_new_lo", "embedding": null, "metadata": {"file_path": "tests/func/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 115, "end_line": 132, "span_ids": ["test_cmd_changes_other_orders_are_preserved"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cmd_changes_other_orders_are_preserved(tmp_dir, dvc, run_head):\n    tmp_dir.gen(FS_STRUCTURE)\n    deps = [\"foo\", \"bar\", \"foobar\"]\n    stage = run_head(*deps, name=\"copy-first-line\")\n\n    initial_content = read_lock_file()\n    # let's change cmd in pipeline file\n    # it should only change \"cmd\", otherwise it should be\n    # structurally same as cmd\n    stage.cmd = \"  \".join(stage.cmd.split())\n    stage.dvcfile._dump_pipeline_file(stage)\n\n    initial_content[\"copy-first-line\"][\"cmd\"] = stage.cmd\n\n    assert dvc.reproduce(stage.addressing) == [stage]\n\n    new_lock_content = read_lock_file()\n    assert_eq_lockfile(new_lock_content, initial_content)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_params_dump_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_test_params_dump_", "embedding": null, "metadata": {"file_path": "tests/func/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 107, "end_line": 156, "span_ids": ["test_params_dump"], "tokens": 391}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_dump(tmp_dir, dvc, run_head):\n    tmp_dir.gen(FS_STRUCTURE)\n\n    stage = run_head(\n        \"foo\",\n        \"bar\",\n        \"foobar\",\n        name=\"copy-first-line\",\n        params=[\n            \"params2.yaml:answer,lists,name\",\n            \"params.yaml:lists,floats,nested.nested1,nested.nested1.nested2\",\n        ],\n    )\n\n    initial_content = read_lock_file()\n    lock = initial_content[\"copy-first-line\"]\n\n    # lock stage key order:\n    assert list(lock.keys()) == [\"cmd\", \"deps\", \"params\", \"outs\"]\n    assert list(lock[\"params\"].keys()) == [\"params.yaml\", \"params2.yaml\"]\n\n    # # params keys are always sorted by the name\n    assert list(lock[\"params\"][\"params.yaml\"].keys()) == [\n        \"floats\",\n        \"lists\",\n        \"nested.nested1\",\n        \"nested.nested1.nested2\",\n    ]\n    assert list(lock[\"params\"][\"params2.yaml\"]) == [\"answer\", \"lists\", \"name\"]\n\n    assert not dvc.reproduce(stage.addressing)\n\n    # let's change the order of params and dump them in pipeline file\n    params, _ = split_params_deps(stage)\n    for param in params:\n        param.params.reverse()\n\n    stage.dvcfile._dump_pipeline_file(stage)\n    assert not dvc.reproduce(stage.addressing)\n\n    (tmp_dir / PIPELINE_LOCK).unlink()\n    assert dvc.reproduce(stage.addressing) == [stage]\n    assert_eq_lockfile(initial_content, read_lock_file())\n\n    # remove build-cache and check if the same structure is built\n    for item in [dvc.stage_cache.cache_dir, PIPELINE_LOCK]:\n        remove(item)\n    assert dvc.reproduce(stage.addressing) == [stage]\n    assert_eq_lockfile(initial_content, read_lock_file())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_with_rev_recursive_test_ls_remote_repo_with_rev_recursive.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_remote_repo_with_rev_recursive_test_ls_remote_repo_with_rev_recursive.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 413, "end_line": 438, "span_ids": ["test_ls_remote_repo_with_rev_recursive"], "tokens": 270}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_remote_repo_with_rev_recursive(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n        erepo_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n\n    rev = erepo_dir.scm.list_all_commits()[1]\n    url = f\"file://{erepo_dir}\"\n    files = Repo.ls(url, rev=rev, recursive=True)\n    match_files(\n        files,\n        (\n            ((\"structure.xml.dvc\",), False),\n            ((\"model\", \"people.csv.dvc\"), False),\n            ((\"data\", \"subcontent\", \"data.xml.dvc\"), False),\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv.dvc\"), False),\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv\"), True),\n            ((\"data\", \"subcontent\", \"statistics\", \".gitignore\"), False),\n            ((\"data\", \"subcontent\", \"data.xml\"), True),\n            ((\"data\", \"subcontent\", \".gitignore\"), False),\n            ((\"model\", \"people.csv\"), True),\n            ((\"model\", \".gitignore\"), False),\n            ((\"structure.xml\",), True),\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_raise_on_too_many_open_files_test_modify_missing_remote.assert_main_remote_m": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_raise_on_too_many_open_files_test_modify_missing_remote.assert_main_remote_m", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 216, "end_line": 233, "span_ids": ["test_modify_missing_remote", "test_raise_on_too_many_open_files"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_raise_on_too_many_open_files(\n    tmp_dir, dvc, tmp_path_factory, mocker, local_remote\n):\n    tmp_dir.dvc_gen({\"file\": \"file content\"})\n\n    mocker.patch.object(\n        LocalTree,\n        \"_upload\",\n        side_effect=OSError(errno.EMFILE, \"Too many open files\"),\n    )\n\n    with pytest.raises(OSError) as e:\n        dvc.push()\n        assert e.errno == errno.EMFILE\n\n\ndef test_modify_missing_remote(tmp_dir, dvc):\n    assert main([\"remote\", \"modify\", \"myremote\", \"user\", \"xxx\"]) == 251", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_downstream_test_downstream.assert_evaluation_4_relp": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_downstream_test_downstream.assert_evaluation_4_relp", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1620, "end_line": 1698, "span_ids": ["test_downstream"], "tokens": 576}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_downstream(dvc):\n    # The dependency graph should look like this:\n    #\n    #       E\n    #      / \\\n    #     D   F\n    #    / \\   \\\n    #   B   C   G\n    #    \\ /\n    #     A\n    #\n    assert main([\"run\", \"--single-stage\", \"-o\", \"A\", \"echo A>A\"]) == 0\n    assert (\n        main([\"run\", \"--single-stage\", \"-d\", \"A\", \"-o\", \"B\", \"echo B>B\"]) == 0\n    )\n    assert (\n        main([\"run\", \"--single-stage\", \"-d\", \"A\", \"-o\", \"C\", \"echo C>C\"]) == 0\n    )\n    assert (\n        main(\n            [\n                \"run\",\n                \"--single-stage\",\n                \"-d\",\n                \"B\",\n                \"-d\",\n                \"C\",\n                \"-o\",\n                \"D\",\n                \"echo D>D\",\n            ]\n        )\n        == 0\n    )\n    assert main([\"run\", \"--single-stage\", \"-o\", \"G\", \"echo G>G\"]) == 0\n    assert (\n        main([\"run\", \"--single-stage\", \"-d\", \"G\", \"-o\", \"F\", \"echo F>F\"]) == 0\n    )\n    assert (\n        main(\n            [\n                \"run\",\n                \"--single-stage\",\n                \"-d\",\n                \"D\",\n                \"-d\",\n                \"F\",\n                \"-o\",\n                \"E\",\n                \"echo E>E\",\n            ]\n        )\n        == 0\n    )\n\n    # We want the evaluation to move from B to E\n    #\n    #       E\n    #      /\n    #     D\n    #    /\n    #   B\n    #\n    evaluation = dvc.reproduce(\"B.dvc\", downstream=True, force=True)\n\n    assert len(evaluation) == 3\n    assert evaluation[0].relpath == \"B.dvc\"\n    assert evaluation[1].relpath == \"D.dvc\"\n    assert evaluation[2].relpath == \"E.dvc\"\n\n    # B, C should be run (in any order) before D\n    # See https://github.com/iterative/dvc/issues/3602\n    evaluation = dvc.reproduce(\"A.dvc\", downstream=True, force=True)\n\n    assert len(evaluation) == 5\n    assert evaluation[0].relpath == \"A.dvc\"\n    assert {evaluation[1].relpath, evaluation[2].relpath} == {\"B.dvc\", \"C.dvc\"}\n    assert evaluation[3].relpath == \"D.dvc\"\n    assert evaluation[4].relpath == \"E.dvc\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_os_TestReproChangedDirMultiStage.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_os_TestReproChangedDirMultiStage.pass", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 152, "span_ids": ["TestReproChangedDirMultiStage", "TestReproCyclicGraphMultiStage", "TestReproFailMultiStage", "MultiStageRun", "MultiStageRun._get_stage_target", "TestReproFrozenUnchangedMultiStage", "MultiStageRun._run", "TestReproUnderDirMultiStage", "TestReproPipelineMultiStage", "TestReproAllPipelinesMultiStage", "TestReproPipelinesMultiStage", "TestNonExistingOutputMultiStage", "TestReproFrozenCallbackMultiStage", "TestReproNoDepsMultiStage", "TestReproDry", "TestReproForceMultiStage", "TestReproChangedDeepDataMultiStage", "imports", "TestReproChangedCodeMultiStage", "TestReproPhonyMultiStage", "TestReproChangedDataMultiStage", "TestCmdReproMultiStage", "TestReproAlreadyCachedMultiStage", "TestReproFrozenMultiStage", "TestReproUpToDateMultiStage", "TestReproNoCommit", "TestReproDepDirWithOutputsUnderItMultiStage"], "tokens": 809}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom copy import deepcopy\nfrom textwrap import dedent\n\nimport pytest\nfrom funcy import lsplit\n\nfrom dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\nfrom dvc.exceptions import CyclicGraphError, ReproductionError\nfrom dvc.main import main\nfrom dvc.stage import PipelineStage\nfrom dvc.utils.serialize import dump_yaml, load_yaml\nfrom tests.func import test_repro\n\nCOPY_SCRIPT_FORMAT = dedent(\n    \"\"\"\\\n    import sys\n    import shutil\n    shutil.copyfile({}, {})\n\"\"\"\n)\nCOPY_SCRIPT = COPY_SCRIPT_FORMAT.format(\"sys.argv[1]\", \"sys.argv[2]\")\n\n\nclass MultiStageRun:\n    def _run(self, **kwargs):\n        assert kwargs.get(\"name\")\n        kwargs.pop(\"fname\", None)\n        # ignore fname for now\n        return self.dvc.run(**kwargs)  # noqa, pylint: disable=no-member\n\n    @staticmethod\n    def _get_stage_target(stage):\n        return stage.addressing\n\n\nclass TestReproFailMultiStage(MultiStageRun, test_repro.TestReproFail):\n    pass\n\n\nclass TestReproCyclicGraphMultiStage(\n    MultiStageRun, test_repro.TestReproCyclicGraph\n):\n    pass\n\n\nclass TestReproUnderDirMultiStage(\n    MultiStageRun, test_repro.TestReproDepUnderDir\n):\n    pass\n\n\nclass TestReproDepDirWithOutputsUnderItMultiStage(\n    MultiStageRun, test_repro.TestReproDepDirWithOutputsUnderIt\n):\n    pass\n\n\nclass TestReproNoDepsMultiStage(MultiStageRun, test_repro.TestReproNoDeps):\n    pass\n\n\nclass TestReproForceMultiStage(MultiStageRun, test_repro.TestReproForce):\n    pass\n\n\nclass TestReproChangedCodeMultiStage(\n    MultiStageRun, test_repro.TestReproChangedCode\n):\n    pass\n\n\nclass TestReproChangedDataMultiStage(\n    MultiStageRun, test_repro.TestReproChangedData\n):\n    pass\n\n\nclass TestReproDry(MultiStageRun, test_repro.TestReproDry):\n    pass\n\n\nclass TestReproUpToDateMultiStage(MultiStageRun, test_repro.TestReproUpToDate):\n    pass\n\n\nclass TestReproChangedDeepDataMultiStage(\n    MultiStageRun, test_repro.TestReproChangedDeepData\n):\n    pass\n\n\nclass TestReproPipelineMultiStage(MultiStageRun, test_repro.TestReproPipeline):\n    pass\n\n\nclass TestReproPipelinesMultiStage(\n    MultiStageRun, test_repro.TestReproPipelines\n):\n    pass\n\n\nclass TestReproFrozenMultiStage(MultiStageRun, test_repro.TestReproFrozen):\n    pass\n\n\nclass TestReproFrozenCallbackMultiStage(\n    MultiStageRun, test_repro.TestReproFrozenCallback\n):\n    pass\n\n\nclass TestReproFrozenUnchangedMultiStage(\n    MultiStageRun, test_repro.TestReproFrozenUnchanged\n):\n    pass\n\n\nclass TestReproPhonyMultiStage(MultiStageRun, test_repro.TestReproPhony):\n    pass\n\n\nclass TestCmdReproMultiStage(MultiStageRun, test_repro.TestCmdRepro):\n    pass\n\n\nclass TestReproAllPipelinesMultiStage(\n    MultiStageRun, test_repro.TestReproAllPipelines\n):\n    pass\n\n\nclass TestReproNoCommit(MultiStageRun, test_repro.TestReproNoCommit):\n    pass\n\n\nclass TestNonExistingOutputMultiStage(\n    MultiStageRun, test_repro.TestNonExistingOutput\n):\n    pass\n\n\nclass TestReproAlreadyCachedMultiStage(\n    MultiStageRun, test_repro.TestReproAlreadyCached\n):\n    pass\n\n\nclass TestReproChangedDirMultiStage(\n    MultiStageRun, test_repro.TestReproChangedDir\n):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_downstream_test_downstream.None_15": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_downstream_test_downstream.None_15", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 210, "end_line": 307, "span_ids": ["test_downstream"], "tokens": 755}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_downstream(tmp_dir, dvc):\n    # The dependency graph should look like this:\n    #\n    #       E\n    #      / \\\n    #     D   F\n    #    / \\   \\\n    #   B   C   G\n    #    \\ /\n    #     A\n    #\n    assert main([\"run\", \"-n\", \"A-gen\", \"-o\", \"A\", \"echo A>A\"]) == 0\n    assert main([\"run\", \"-n\", \"B-gen\", \"-d\", \"A\", \"-o\", \"B\", \"echo B>B\"]) == 0\n    assert (\n        main([\"run\", \"--single-stage\", \"-d\", \"A\", \"-o\", \"C\", \"echo C>C\"]) == 0\n    )\n    assert (\n        main(\n            [\"run\", \"-n\", \"D-gen\", \"-d\", \"B\", \"-d\", \"C\", \"-o\", \"D\", \"echo D>D\"]\n        )\n        == 0\n    )\n    assert main([\"run\", \"--single-stage\", \"-o\", \"G\", \"echo G>G\"]) == 0\n    assert main([\"run\", \"-n\", \"F-gen\", \"-d\", \"G\", \"-o\", \"F\", \"echo F>F\"]) == 0\n    assert (\n        main(\n            [\n                \"run\",\n                \"--single-stage\",\n                \"-d\",\n                \"D\",\n                \"-d\",\n                \"F\",\n                \"-o\",\n                \"E\",\n                \"echo E>E\",\n            ]\n        )\n        == 0\n    )\n\n    # We want the evaluation to move from B to E\n    #\n    #       E\n    #      /\n    #     D\n    #    /\n    #   B\n    #\n    evaluation = dvc.reproduce(\n        PIPELINE_FILE + \":B-gen\", downstream=True, force=True\n    )\n\n    assert len(evaluation) == 3\n    assert (\n        isinstance(evaluation[0], PipelineStage)\n        and evaluation[0].relpath == PIPELINE_FILE\n        and evaluation[0].name == \"B-gen\"\n    )\n    assert (\n        isinstance(evaluation[1], PipelineStage)\n        and evaluation[1].relpath == PIPELINE_FILE\n        and evaluation[1].name == \"D-gen\"\n    )\n    assert (\n        not isinstance(evaluation[2], PipelineStage)\n        and evaluation[2].relpath == \"E.dvc\"\n    )\n\n    # B, C should be run (in any order) before D\n    # See https://github.com/iterative/dvc/issues/3602\n    evaluation = dvc.reproduce(\n        PIPELINE_FILE + \":A-gen\", downstream=True, force=True\n    )\n\n    assert len(evaluation) == 5\n    assert (\n        isinstance(evaluation[0], PipelineStage)\n        and evaluation[0].relpath == PIPELINE_FILE\n        and evaluation[0].name == \"A-gen\"\n    )\n    names = set()\n    for stage in evaluation[1:3]:\n        if isinstance(stage, PipelineStage):\n            assert stage.relpath == PIPELINE_FILE\n            names.add(stage.name)\n        else:\n            names.add(stage.relpath)\n    assert names == {\"B-gen\", \"C.dvc\"}\n    assert (\n        isinstance(evaluation[3], PipelineStage)\n        and evaluation[3].relpath == PIPELINE_FILE\n        and evaluation[3].name == \"D-gen\"\n    )\n    assert (\n        not isinstance(evaluation[4], PipelineStage)\n        and evaluation[4].relpath == \"E.dvc\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_lockfile_gets_deleted_test_repro_when_lockfile_gets_deleted.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_lockfile_gets_deleted_test_repro_when_lockfile_gets_deleted.assert_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 463, "end_line": 488, "span_ids": ["test_repro_when_lockfile_gets_deleted"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_lockfile_gets_deleted(tmp_dir, dvc):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"foo\", \"foo\")\n    dump_yaml(\n        PIPELINE_FILE,\n        {\n            \"stages\": {\n                \"run-copy\": {\n                    \"cmd\": \"python copy.py {} {}\".format(\"foo\", \"foobar\"),\n                    \"deps\": [\"foo\"],\n                    \"outs\": [\"foobar\"],\n                }\n            }\n        },\n    )\n    assert dvc.reproduce(\":run-copy\")\n    assert os.path.exists(PIPELINE_LOCK)\n\n    assert not dvc.reproduce(\":run-copy\")\n    os.unlink(PIPELINE_LOCK)\n    stages = dvc.reproduce(\":run-copy\")\n    assert (\n        stages\n        and stages[0].relpath == PIPELINE_FILE\n        and stages[0].name == \"run-copy\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_cyclic_graph_error_test_cyclic_graph_error.with_pytest_raises_Cyclic.dvc_reproduce_copy_baz_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_cyclic_graph_error_test_cyclic_graph_error.with_pytest_raises_Cyclic.dvc_reproduce_copy_baz_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 454, "end_line": 468, "span_ids": ["test_cyclic_graph_error"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cyclic_graph_error(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    run_copy(\"bar\", \"baz\", name=\"copy-bar-baz\")\n    run_copy(\"baz\", \"foobar\", name=\"copy-baz-foobar\")\n\n    data = load_yaml(PIPELINE_FILE)\n    data[\"stages\"][\"copy-baz-foo\"] = {\n        \"cmd\": \"echo baz > foo\",\n        \"deps\": [\"baz\"],\n        \"outs\": [\"foo\"],\n    }\n    dump_yaml(PIPELINE_FILE, data)\n    with pytest.raises(CyclicGraphError):\n        dvc.reproduce(\":copy-baz-foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_os_test_run_with_name.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_os_test_run_with_name.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 21, "span_ids": ["test_run_with_name", "imports"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport textwrap\n\nimport pytest\n\nfrom dvc.exceptions import InvalidArgumentError\nfrom dvc.stage.exceptions import DuplicateStageName, InvalidStageName\nfrom dvc.utils.serialize import dump_yaml, parse_yaml_for_update\n\n\ndef test_run_with_name(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\n    from dvc.stage import PipelineStage\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert not os.path.exists(PIPELINE_FILE)\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-to-bar\")\n    assert isinstance(stage, PipelineStage)\n    assert stage.name == \"copy-foo-to-bar\"\n    assert os.path.exists(PIPELINE_FILE)\n    assert os.path.exists(PIPELINE_LOCK)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_multi_stage_run_cached_test_multistage_dump_on_non_cached_outputs.dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_multi_stage_run_cached_test_multistage_dump_on_non_cached_outputs.dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 54, "end_line": 70, "span_ids": ["test_multistage_dump_on_non_cached_outputs", "test_multi_stage_run_cached"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_multi_stage_run_cached(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    run_copy(\"foo\", \"foo2\", name=\"copy-foo1-foo2\")\n    stage2 = run_copy(\"foo\", \"foo2\", name=\"copy-foo1-foo2\")\n\n    assert stage2 is None\n\n\ndef test_multistage_dump_on_non_cached_outputs(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"foo\")\n    dvc.run(\n        cmd=\"cp foo foo1\",\n        deps=[\"foo\"],\n        name=\"copy-foo1-foo2\",\n        outs_no_cache=[\"foo1\"],\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_dump_on_multistage_test_run_dump_on_multistage.assert_Dvcfile_dvc_PIPEL": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_dump_on_multistage_test_run_dump_on_multistage.assert_Dvcfile_dvc_PIPEL", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 144, "end_line": 201, "span_ids": ["test_run_dump_on_multistage"], "tokens": 395}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_dump_on_multistage(tmp_dir, dvc, run_head):\n    from dvc.dvcfile import PIPELINE_FILE, Dvcfile\n\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"foo\": \"foo\\nfoo\",\n                \"bar\": \"bar\\nbar\",\n                \"foobar\": \"foobar\\foobar\",\n            }\n        }\n    )\n\n    dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        wdir=\"dir\",\n        outs_persist=[\"foo2\"],\n        always_changed=True,\n    )\n    data = Dvcfile(dvc, PIPELINE_FILE)._load()[0]\n    assert data == {\n        \"stages\": {\n            \"copy-foo-foo2\": {\n                \"cmd\": \"cp foo foo2\",\n                \"deps\": [\"foo\"],\n                \"outs\": [{\"foo2\": {\"persist\": True}}],\n                \"always_changed\": True,\n                \"wdir\": \"dir\",\n            },\n        }\n    }\n\n    run_head(\n        \"foo\",\n        \"bar\",\n        \"foobar\",\n        name=\"head-files\",\n        outs=[\"bar-1\"],\n        outs_persist=[\"foo-1\"],\n        metrics_no_cache=[\"foobar-1\"],\n        wdir=\"dir\",\n    )\n    assert Dvcfile(dvc, PIPELINE_FILE)._load()[0] == {\n        \"stages\": {\n            \"head-files\": {\n                \"cmd\": \"python {} foo bar foobar\".format(\n                    (tmp_dir / \"head.py\").resolve()\n                ),\n                \"wdir\": \"dir\",\n                \"deps\": [\"bar\", \"foo\", \"foobar\"],\n                \"outs\": [\"bar-1\", {\"foo-1\": {\"persist\": True}}],\n                \"metrics\": [{\"foobar-1\": {\"cache\": False}}],\n            },\n            **data[\"stages\"],\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_with_invalid_stage_name_supported_params._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_with_invalid_stage_name_supported_params._", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 206, "end_line": 233, "span_ids": ["test_run_with_name_having_hyphen_underscore", "test_run_already_exists", "test_run_with_invalid_stage_name", "impl"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"char\", [\"@:\", \"#\", \"$\", \":\", \"/\", \"\\\\\", \".\", \";\", \",\"]\n)\ndef test_run_with_invalid_stage_name(run_copy, char):\n    with pytest.raises(InvalidStageName):\n        run_copy(\"foo\", \"bar\", name=f\"copy_name-{char}\")\n\n\ndef test_run_with_name_having_hyphen_underscore(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo_bar\")\n\n\ndef test_run_already_exists(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy\")\n    with pytest.raises(DuplicateStageName):\n        run_copy(\"bar\", \"foobar\", name=\"copy\", force=False)\n    run_copy(\"bar\", \"foobar\", name=\"copy\", force=True)\n\n\nsupported_params = {\n    \"name\": \"Answer\",\n    \"answer\": 42,\n    \"floats\": 42.0,\n    \"lists\": [42, 42.0, \"42\"],\n    \"nested\": {\"nested1\": {\"nested2\": \"42\", \"nested2-2\": 41.99999}},\n}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_params_default_test_run_params_default.assert_data_stages_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_params_default_test_run_params_default.assert_data_stages_re", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 234, "end_line": 254, "span_ids": ["test_run_params_default"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_params_default(tmp_dir, dvc):\n    from dvc.dependency import ParamsDependency\n\n    dump_yaml(tmp_dir / \"params.yaml\", supported_params)\n    stage = dvc.run(\n        name=\"read_params\",\n        params=[\"nested.nested1.nested2\"],\n        cmd=\"cat params.yaml\",\n    )\n    assert isinstance(stage.deps[0], ParamsDependency)\n    assert stage.deps[0].params == [\"nested.nested1.nested2\"]\n\n    lockfile = stage.dvcfile._lockfile\n    assert lockfile.load()[\"read_params\"][\"params\"] == {\n        \"params.yaml\": {\"nested.nested1.nested2\": \"42\"}\n    }\n\n    data, _ = stage.dvcfile._load()\n    assert data[\"stages\"][\"read_params\"][\"params\"] == [\n        \"nested.nested1.nested2\"\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunCircularDependency_TestRunCircularDependency.test_non_normalized_paths.with_self_assertRaises_Ci.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunCircularDependency_TestRunCircularDependency.test_non_normalized_paths.with_self_assertRaises_Ci.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 118, "end_line": 147, "span_ids": ["TestRunCircularDependency.test", "TestRunCircularDependency.test_non_normalized_paths", "TestRunCircularDependency.test_outs_no_cache", "TestRunCircularDependency"], "tokens": 183}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunCircularDependency(TestDvc):\n    def test(self):\n        with self.assertRaises(CircularDependencyError):\n            self.dvc.run(\n                cmd=\"command\",\n                deps=[self.FOO],\n                outs=[self.FOO],\n                fname=\"circular-dependency.dvc\",\n                single_stage=True,\n            )\n\n    def test_outs_no_cache(self):\n        with self.assertRaises(CircularDependencyError):\n            self.dvc.run(\n                cmd=\"command\",\n                deps=[self.FOO],\n                outs_no_cache=[self.FOO],\n                fname=\"circular-dependency.dvc\",\n                single_stage=True,\n            )\n\n    def test_non_normalized_paths(self):\n        with self.assertRaises(CircularDependencyError):\n            self.dvc.run(\n                cmd=\"command\",\n                deps=[\"./foo\"],\n                outs=[\"foo\"],\n                fname=\"circular-dependency.dvc\",\n                single_stage=True,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunCircularDependency.test_graph_TestRunCircularDependency.test_graph.with_self_assertRaises_Cy.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunCircularDependency.test_graph_TestRunCircularDependency.test_graph.with_self_assertRaises_Cy.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 148, "end_line": 169, "span_ids": ["TestRunCircularDependency.test_graph"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunCircularDependency(TestDvc):\n\n    def test_graph(self):\n        self.dvc.run(\n            deps=[self.FOO],\n            outs=[\"bar.txt\"],\n            cmd=\"echo bar > bar.txt\",\n            single_stage=True,\n        )\n\n        self.dvc.run(\n            deps=[\"bar.txt\"],\n            outs=[\"baz.txt\"],\n            cmd=\"echo baz > baz.txt\",\n            single_stage=True,\n        )\n\n        with self.assertRaises(CyclicGraphError):\n            self.dvc.run(\n                deps=[\"baz.txt\"],\n                outs=[self.FOO],\n                cmd=\"echo baz > foo\",\n                single_stage=True,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunBadWdir_TestRunBadWdir.test_not_dir.with_self_assertRaises_St.self_dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunBadWdir_TestRunBadWdir.test_not_dir.with_self_assertRaises_St.self_dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 250, "end_line": 274, "span_ids": ["TestRunBadWdir.test_same_prefix", "TestRunBadWdir.test", "TestRunBadWdir", "TestRunBadWdir.test_not_found", "TestRunBadWdir.test_not_dir"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunBadWdir(TestDvc):\n    def test(self):\n        with self.assertRaises(StagePathOutsideError):\n            self.dvc.run(cmd=\"command\", wdir=self.mkdtemp(), single_stage=True)\n\n    def test_same_prefix(self):\n        with self.assertRaises(StagePathOutsideError):\n            path = f\"{self._root_dir}-{uuid.uuid4()}\"\n            os.mkdir(path)\n            self.dvc.run(cmd=\"command\", wdir=path, single_stage=True)\n\n    def test_not_found(self):\n        with self.assertRaises(StagePathNotFoundError):\n            path = os.path.join(self._root_dir, str(uuid.uuid4()))\n            self.dvc.run(cmd=\"command\", wdir=path, single_stage=True)\n\n    def test_not_dir(self):\n        with self.assertRaises(StagePathNotDirectoryError):\n            path = os.path.join(self._root_dir, str(uuid.uuid4()))\n            os.mkdir(path)\n            path = os.path.join(path, str(uuid.uuid4()))\n            open(path, \"a\").close()\n            self.dvc.run(\n                cmd=\"command\", wdir=path, single_stage=True,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_os_test_state.with_state_.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_state.py_os_test_state.with_state_.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_state.py", "file_name": "test_state.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 31, "span_ids": ["imports", "test_state"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport mock\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.state import State\nfrom dvc.utils import file_md5\n\n\ndef test_state(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    path = tmp_dir / \"foo\"\n    path_info = PathInfo(path)\n    hash_info = HashInfo(\"md5\", file_md5(path)[0])\n\n    state = State(dvc)\n\n    with state:\n        state.save(path_info, hash_info)\n        assert state.get(path_info) == hash_info\n\n        path.unlink()\n        path.write_text(\"1\")\n\n        assert state.get(path_info) is None\n\n        hash_info = HashInfo(\"md5\", file_md5(path)[0])\n        state.save(path_info, hash_info)\n\n        assert state.get(path_info) == hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_before_and_after_dvc_init_test_status_before_and_after_dvc_init.assert_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_before_and_after_dvc_init_test_status_before_and_after_dvc_init.assert_status_", "embedding": null, "metadata": {"file_path": "tests/func/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 51, "end_line": 73, "span_ids": ["test_status_before_and_after_dvc_init"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_status_before_and_after_dvc_init(tmp_dir, dvc, git_dir):\n    git_dir.scm_gen(\"file\", \"first version\", commit=\"first verison\")\n    old_rev = git_dir.scm.get_rev()\n\n    dvc.imp(os.fspath(git_dir), \"file\", \"file\")\n\n    assert dvc.status([\"file.dvc\"]) == {}\n\n    with git_dir.chdir():\n        git_dir.init(dvc=True)\n        git_dir.scm.gitpython.repo.index.remove([\"file\"])\n        os.remove(\"file\")\n        git_dir.dvc_gen(\"file\", \"second version\", commit=\"with dvc\")\n        new_rev = git_dir.scm.get_rev()\n\n    assert old_rev != new_rev\n\n    (status,) = dvc.status([\"file.dvc\"])[\"file.dvc\"]\n    assert status == {\n        \"changed deps\": {\n            \"file ({})\".format(os.fspath(git_dir)): \"update available\"\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_on_pipeline_stages_test_status_on_pipeline_stages.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_on_pipeline_stages_test_status_on_pipeline_stages.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 70, "end_line": 94, "span_ids": ["test_status_on_pipeline_stages"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_status_on_pipeline_stages(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    stage.cmd = \"  \".join(stage.cmd.split())\n    stage.dvcfile._dump_pipeline_file(stage)\n    assert dvc.status(\"copy-foo-bar\") == {\"copy-foo-bar\": [\"changed command\"]}\n\n    # delete outputs\n    (tmp_dir / \"bar\").unlink()\n    assert dvc.status() == {\n        \"copy-foo-bar\": [\n            {\"changed outs\": {\"bar\": \"deleted\"}},\n            \"changed command\",\n        ]\n    }\n    (tmp_dir / \"foo\").unlink()\n    assert dvc.status() == {\n        \"foo.dvc\": [{\"changed outs\": {\"foo\": \"deleted\"}}],\n        \"copy-foo-bar\": [\n            {\"changed deps\": {\"foo\": \"deleted\"}},\n            {\"changed outs\": {\"bar\": \"deleted\"}},\n            \"changed command\",\n        ],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_rev_test_update_rev.None_4.assert_foobar_foo_f_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_rev_test_update_rev.None_4.assert_foobar_foo_f_", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 136, "end_line": 167, "span_ids": ["test_update_rev"], "tokens": 320}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_update_rev(tmp_dir, dvc, scm, git_dir):\n    with git_dir.chdir():\n        git_dir.scm_gen({\"foo\": \"foo\"}, commit=\"first\")\n\n    dvc.imp(os.fspath(git_dir), \"foo\")\n    assert (tmp_dir / \"foo.dvc\").exists()\n\n    with git_dir.chdir(), git_dir.branch(\"branch1\", new=True):\n        git_dir.scm_gen({\"foo\": \"foobar\"}, commit=\"branch1 commit\")\n        branch1_head = git_dir.scm.get_rev()\n\n    with git_dir.chdir(), git_dir.branch(\"branch2\", new=True):\n        git_dir.scm_gen({\"foo\": \"foobar foo\"}, commit=\"branch2 commit\")\n        branch2_head = git_dir.scm.get_rev()\n\n    stage = dvc.update([\"foo.dvc\"], rev=\"branch1\")[0]\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(git_dir),\n        \"rev\": \"branch1\",\n        \"rev_lock\": branch1_head,\n    }\n    with open(tmp_dir / \"foo\") as f:\n        assert \"foobar\" == f.read()\n\n    stage = dvc.update([\"foo.dvc\"], rev=\"branch2\")[0]\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(git_dir),\n        \"rev\": \"branch2\",\n        \"rev_lock\": branch2_head,\n    }\n    with open(tmp_dir / \"foo\") as f:\n        assert \"foobar foo\" == f.read()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_no_changes_test_show_md_empty.assert__show_md_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_no_changes_test_show_md_empty.assert__show_md_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 93, "end_line": 117, "span_ids": ["test_show_md_empty", "test_no_changes"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_changes(mocker, caplog):\n    args = parse_args([\"diff\", \"--show-json\"])\n    cmd = args.func(args)\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value={})\n\n    def info():\n        return [\n            msg\n            for name, level, msg in caplog.record_tuples\n            if name.startswith(\"dvc\") and level == logging.INFO\n        ]\n\n    assert 0 == cmd.run()\n    assert [\"{}\"] == info()\n\n    caplog.clear()\n\n    args = parse_args([\"diff\"])\n    cmd = args.func(args)\n    assert 0 == cmd.run()\n    assert not info()\n\n\ndef test_show_md_empty():\n    assert _show_md({}) == (\"| Status   | Path   |\\n|----------|--------|\\n\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_textwrap_test_metrics_diff.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_textwrap_test_metrics_diff.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 46, "span_ids": ["imports", "test_metrics_diff"], "tokens": 224}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import textwrap\n\nfrom dvc.cli import parse_args\nfrom dvc.command.metrics import (\n    CmdMetricsDiff,\n    CmdMetricsShow,\n    _show_diff,\n    _show_metrics,\n)\n\n\ndef test_metrics_diff(dvc, mocker):\n    cli_args = parse_args(\n        [\n            \"metrics\",\n            \"diff\",\n            \"HEAD~10\",\n            \"HEAD~1\",\n            \"-R\",\n            \"--all\",\n            \"--show-json\",\n            \"--show-md\",\n            \"--targets\",\n            \"target1\",\n            \"target2\",\n            \"--show-md\",\n            \"--no-path\",\n            \"--precision\",\n            \"10\",\n        ]\n    )\n    assert cli_args.func == CmdMetricsDiff\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.metrics.diff.diff\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        targets=[\"target1\", \"target2\"],\n        a_rev=\"HEAD~10\",\n        b_rev=\"HEAD~1\",\n        recursive=True,\n        all=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_sorted_test_metrics_diff_markdown_empty.assert__show_diff_mar": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_sorted_test_metrics_diff_markdown_empty.assert__show_diff_mar", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 156, "end_line": 180, "span_ids": ["test_metrics_diff_sorted", "test_metrics_diff_markdown_empty"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_sorted():\n    assert _show_diff(\n        {\n            \"metrics.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6, \"diff\": 1},\n                \"a.d.e\": {\"old\": 3, \"new\": 4, \"diff\": 1},\n                \"a.b.c\": {\"old\": 1, \"new\": 2, \"diff\": 1},\n            }\n        }\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path          Metric    Old    New    Change\n        metrics.yaml  a.b.c     1      2      1\n        metrics.yaml  a.d.e     3      4      1\n        metrics.yaml  x.b       5      6      1\"\"\"\n    )\n\n\ndef test_metrics_diff_markdown_empty():\n    assert _show_diff({}, markdown=True) == textwrap.dedent(\n        \"\"\"\\\n        | Path   | Metric   | Old   | New   | Change   |\n        |--------|----------|-------|-------|----------|\n        \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_sorted_test_params_diff_markdown_empty.assert__show_diff_mar": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_sorted_test_params_diff_markdown_empty.assert__show_diff_mar", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 110, "end_line": 134, "span_ids": ["test_params_diff_markdown_empty", "test_params_diff_sorted"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_diff_sorted():\n    assert _show_diff(\n        {\n            \"params.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6},\n                \"a.d.e\": {\"old\": 3, \"new\": 4},\n                \"a.b.c\": {\"old\": 1, \"new\": 2},\n            }\n        }\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path         Param    Old    New\n        params.yaml  a.b.c    1      2\n        params.yaml  a.d.e    3      4\n        params.yaml  x.b      5      6\"\"\"\n    )\n\n\ndef test_params_diff_markdown_empty():\n    assert _show_diff({}, markdown=True) == textwrap.dedent(\n        \"\"\"\\\n        | Path   | Param   | Old   | New   |\n        |--------|---------|-------|-------|\n        \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_update.py_from_dvc_cli_import_parse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_update.py_from_dvc_cli_import_parse_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 18, "span_ids": ["imports", "test_update"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.update import CmdUpdate\n\n\ndef test_update(dvc, mocker):\n    cli_args = parse_args(\n        [\"update\", \"target1\", \"target2\", \"--rev\", \"REV\", \"--recursive\"]\n    )\n    assert cli_args.func == CmdUpdate\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.Repo.update\")\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        targets=[\"target1\", \"target2\"], rev=\"REV\", recursive=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_gdrive.py_os_USER_CREDS_MISSED_KEY_ERROR._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_gdrive.py_os_USER_CREDS_MISSED_KEY_ERROR._", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_gdrive.py", "file_name": "test_gdrive.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 9, "span_ids": ["imports"], "tokens": 229}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.tree.gdrive import GDriveAuthError, GDriveTree\n\nUSER_CREDS_TOKEN_REFRESH_ERROR = '{\"access_token\": \"\", \"client_id\": \"\", \"client_secret\": \"\", \"refresh_token\": \"\", \"token_expiry\": \"\", \"token_uri\": \"https://oauth2.googleapis.com/token\", \"user_agent\": null, \"revoke_uri\": \"https://oauth2.googleapis.com/revoke\", \"id_token\": null, \"id_token_jwt\": null, \"token_response\": {\"access_token\": \"\", \"expires_in\": 3600, \"scope\": \"https://www.googleapis.com/auth/drive.appdata https://www.googleapis.com/auth/drive\", \"token_type\": \"Bearer\"}, \"scopes\": [\"https://www.googleapis.com/auth/drive\", \"https://www.googleapis.com/auth/drive.appdata\"], \"token_info_uri\": \"https://oauth2.googleapis.com/tokeninfo\", \"invalid\": true, \"_class\": \"OAuth2Credentials\", \"_module\": \"oauth2client.client\"}'  # noqa: E501\n\nUSER_CREDS_MISSED_KEY_ERROR = \"{}\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_walk_with_submodules_test_walk_with_submodules.assert_set_files_g": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_walk_with_submodules_test_walk_with_submodules.assert_set_files_g", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 34, "end_line": 53, "span_ids": ["test_walk_with_submodules"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_with_submodules(tmp_dir, scm, git_dir):\n    git_dir.scm_gen(\n        {\"foo\": \"foo\", \"bar\": \"bar\", \"dir\": {\"data\": \"data\"}},\n        commit=\"add dir and files\",\n    )\n    scm.gitpython.repo.create_submodule(\n        \"submodule\", \"submodule\", url=os.fspath(git_dir)\n    )\n    scm.commit(\"added submodule\")\n\n    files = []\n    dirs = []\n    tree = scm.get_tree(\"HEAD\")\n    for _, dnames, fnames in tree.walk(\".\"):\n        dirs.extend(dnames)\n        files.extend(fnames)\n\n    # currently we don't walk through submodules\n    assert not dirs\n    assert set(files) == {\".gitmodules\", \"submodule\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_is_tracked_test_is_tracked.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_is_tracked_test_is_tracked.None_11", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 65, "span_ids": ["test_is_tracked"], "tokens": 261}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_is_tracked(tmp_dir, scm):\n    tmp_dir.scm_gen(\n        {\n            \"tracked\": \"tracked\",\n            \"dir\": {\"data\": \"data\", \"subdir\": {\"subdata\": \"subdata\"}},\n        },\n        commit=\"add dirs and files\",\n    )\n    tmp_dir.gen({\"untracked\": \"untracked\", \"dir\": {\"untracked\": \"untracked\"}})\n\n    # sanity check\n    assert (tmp_dir / \"untracked\").exists()\n    assert (tmp_dir / \"tracked\").exists()\n    assert (tmp_dir / \"dir\" / \"untracked\").exists()\n    assert (tmp_dir / \"dir\" / \"data\").exists()\n    assert (tmp_dir / \"dir\" / \"subdir\" / \"subdata\").exists()\n\n    assert not scm.is_tracked(\"untracked\")\n    assert not scm.is_tracked(os.path.join(\"dir\", \"untracked\"))\n\n    assert scm.is_tracked(\"tracked\")\n    assert scm.is_tracked(\"dir\")\n    assert scm.is_tracked(os.path.join(\"dir\", \"data\"))\n    assert scm.is_tracked(os.path.join(\"dir\", \"subdir\"))\n    assert scm.is_tracked(os.path.join(\"dir\", \"subdir\", \"subdata\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_json_test_collect_and_send_report.assert_mock_daemon_call_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_analytics.py_json_test_collect_and_send_report.assert_mock_daemon_call_c", "embedding": null, "metadata": {"file_path": "tests/unit/test_analytics.py", "file_name": "test_analytics.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 39, "span_ids": ["imports", "tmp_global_dir", "test_collect_and_send_report"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport platform\n\nimport mock\nimport pytest\nfrom voluptuous import Any, Schema\n\nfrom dvc import analytics\nfrom dvc.cli import parse_args\n\n\n@pytest.fixture\ndef tmp_global_dir(tmp_path):\n    \"\"\"\n    Fixture to prevent modifying the actual global config\n    \"\"\"\n    with mock.patch(\"dvc.config.Config.get_dir\", return_value=str(tmp_path)):\n        yield\n\n\n@mock.patch(\"dvc.daemon._spawn\")\n@mock.patch(\"json.dump\")\ndef test_collect_and_send_report(mock_json, mock_daemon, tmp_global_dir):\n    analytics.collect_and_send_report()\n    report = mock_json.call_args[0][0]\n\n    assert not report.get(\"cmd_class\")\n    assert not report.get(\"cmd_return_code\")\n\n    args = parse_args([\"add\", \"foo\"])\n    return_code = 0\n\n    analytics.collect_and_send_report(args, return_code)\n    report = mock_json.call_args[0][0]\n\n    assert report[\"cmd_class\"] == \"CmdAdd\"\n    assert report[\"cmd_return_code\"] == return_code\n\n    assert mock_daemon.call_count == 2", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_stage_dump_with_deps_and_outs_test_stage_dump_with_deps_and_outs.assert_lockfile_load_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_stage_dump_with_deps_and_outs_test_stage_dump_with_deps_and_outs.assert_lockfile_load_", "embedding": null, "metadata": {"file_path": "tests/unit/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 42, "span_ids": ["test_stage_dump_with_deps_and_outs"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_dump_with_deps_and_outs(tmp_dir, dvc):\n    data = {\n        \"s1\": {\n            \"cmd\": \"command\",\n            \"deps\": [{\"md5\": \"1.txt\", \"path\": \"checksum\"}],\n            \"outs\": [{\"md5\": \"2.txt\", \"path\": \"checksum\"}],\n        }\n    }\n    dump_yaml(\"path.lock\", data)\n    lockfile = Lockfile(dvc, \"path.lock\")\n    stage = PipelineStage(name=\"s2\", repo=dvc, path=\"path\", cmd=\"command2\")\n    lockfile.dump(stage)\n    assert lockfile.load() == {\n        **data,\n        \"s2\": {\"cmd\": \"command2\"},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_stage_overwrites_if_already_exists_test_load_when_lockfile_does_not_exist.assert_Lockfile_dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_stage_overwrites_if_already_exists_test_load_when_lockfile_does_not_exist.assert_Lockfile_dvc", "embedding": null, "metadata": {"file_path": "tests/unit/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 60, "span_ids": ["test_load_when_lockfile_does_not_exist", "test_stage_overwrites_if_already_exists"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_overwrites_if_already_exists(tmp_dir, dvc):\n    lockfile = Lockfile(dvc, \"path.lock\",)\n    stage = PipelineStage(name=\"s2\", repo=dvc, path=\"path\", cmd=\"command2\")\n    lockfile.dump(stage)\n    stage = PipelineStage(name=\"s2\", repo=dvc, path=\"path\", cmd=\"command3\")\n    lockfile.dump(stage)\n    assert lockfile.load() == {\n        \"s2\": {\"cmd\": \"command3\"},\n    }\n\n\ndef test_load_when_lockfile_does_not_exist(tmp_dir, dvc):\n    assert {} == Lockfile(dvc, \"pipelines.lock\").load()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_humanize.py_from_collections_import_O_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_humanize.py_from_collections_import_O_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_humanize.py", "file_name": "test_humanize.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 41, "span_ids": ["imports", "test_get_summary"], "tokens": 270}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import OrderedDict\n\nfrom dvc.utils.humanize import get_summary\n\n\ndef test_get_summary():\n    # dict, so that we could delete from it easily\n    stats = OrderedDict(\n        [\n            (\"fetched\", 3),\n            (\"added\", [\"file1\", \"file2\", \"file3\"]),\n            (\"deleted\", [\"file4\", \"file5\"]),\n            (\"modified\", [\"file6\", \"file7\"]),\n        ]\n    )\n\n    assert get_summary(stats.items()) == (\n        \"3 files fetched, \"\n        \"3 files added, \"\n        \"2 files deleted \"\n        \"and \"\n        \"2 files modified\"\n    )\n\n    del stats[\"fetched\"]\n    del stats[\"deleted\"][1]\n    assert (\n        get_summary(stats.items())\n        == \"3 files added, 1 file deleted and 2 files modified\"\n    )\n\n    del stats[\"deleted\"][0]\n    assert get_summary(stats.items()) == \"3 files added and 2 files modified\"\n\n    del stats[\"modified\"]\n    assert get_summary(stats.items()) == \"3 files added\"\n\n    assert get_summary([]) == \"\"\n    assert get_summary([(\"x\", 0), (\"y\", [])]) == \"\"\n    assert get_summary([(\"x\", 1), (\"y\", [])]) == \"1 file x\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_os_test_to_chunks_chunk_size.assert_result_expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_os_test_to_chunks_chunk_size.assert_result_expected", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 26, "span_ids": ["imports", "test_to_chunks_chunk_size"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport re\n\nimport pytest\n\nfrom dvc.path_info import PathInfo\nfrom dvc.utils import (\n    dict_sha256,\n    file_md5,\n    fix_env,\n    parse_target,\n    relpath,\n    resolve_output,\n    tmp_fname,\n    to_chunks,\n)\n\n\n@pytest.mark.parametrize(\n    \"chunk_size, expected_chunks\",\n    [(1, [[1], [2], [3], [4]]), (2, [[1, 2], [3, 4]]), (3, [[1, 2, 3], [4]])],\n)\ndef test_to_chunks_chunk_size(chunk_size, expected_chunks):\n    list_to_chunk = [1, 2, 3, 4]\n    result = list(to_chunks(list_to_chunk, chunk_size=chunk_size))\n    assert result == expected_chunks", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_resolve_output_test_resolve_output.assert_result_expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_resolve_output_test_resolve_output.assert_result_expected", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 114, "end_line": 135, "span_ids": ["test_resolve_output"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"inp,out,is_dir,expected\",\n    [\n        [\"target\", None, False, \"target\"],\n        [\"target\", \"dir\", True, os.path.join(\"dir\", \"target\")],\n        [\"target\", \"file_target\", False, \"file_target\"],\n        [\n            \"target\",\n            os.path.join(\"dir\", \"subdir\"),\n            True,\n            os.path.join(\"dir\", \"subdir\", \"target\"),\n        ],\n        [\"dir/\", None, False, \"dir\"],\n        [\"dir\", None, False, \"dir\"],\n        [\"dir\", \"other_dir\", False, \"other_dir\"],\n        [\"dir\", \"other_dir\", True, os.path.join(\"other_dir\", \"dir\")],\n    ],\n)\ndef test_resolve_output(inp, out, is_dir, expected, mocker):\n    mocker.patch(\"os.path.isdir\", return_value=is_dir)\n    result = resolve_output(inp, out)\n    assert result == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/dag.py", "file_name": "dag.py", "file_type": "text/x-python", "category": "implementation", "start_line": 112, "end_line": 150, "span_ids": ["add_parser"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    DAG_HELP = \"Visualize DVC project DAG.\"\n    dag_parser = subparsers.add_parser(\n        \"dag\",\n        parents=[parent_parser],\n        description=append_doc_link(DAG_HELP, \"dag\"),\n        help=DAG_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    dag_parser.add_argument(\n        \"--dot\",\n        action=\"store_true\",\n        default=False,\n        help=\"Print DAG with .dot format.\",\n    )\n    dag_parser.add_argument(\n        \"--full\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Show full DAG that the target belongs too, instead of \"\n            \"showing DAG consisting only of ancestors.\"\n        ),\n    )\n    dag_parser.add_argument(\n        \"-o\",\n        \"--outs\",\n        action=\"store_true\",\n        default=False,\n        help=\"Print output files instead of stages.\",\n    )\n    dag_parser.add_argument(\n        \"target\",\n        nargs=\"?\",\n        help=\"Stage or output to show pipeline for (optional). \"\n        \"Finds all stages in the workspace by default.\",\n    )\n    dag_parser.set_defaults(func=CmdDAG)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/freeze.py_argparse_CmdUnfreeze.run.return.self__run_self_repo_unfre": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/freeze.py_argparse_CmdUnfreeze.run.return.self__run_self_repo_unfre", "embedding": null, "metadata": {"file_path": "dvc/command/freeze.py", "file_name": "freeze.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["CmdFreezeBase", "CmdFreeze", "imports", "CmdFreezeBase._run", "CmdFreeze.run", "CmdUnfreeze", "CmdUnfreeze.run"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdFreezeBase(CmdBase):\n    def _run(self, func, name):\n        ret = 0\n        for target in self.args.targets:\n            try:\n                func(target)\n            except DvcException:\n                logger.exception(f\"failed to {name} '{target}'\")\n                ret = 1\n        return ret\n\n\nclass CmdFreeze(CmdFreezeBase):\n    def run(self):\n        return self._run(self.repo.freeze, \"freeze\")\n\n\nclass CmdUnfreeze(CmdFreezeBase):\n    def run(self):\n        return self._run(self.repo.unfreeze, \"unfreeze\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/freeze.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/freeze.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/freeze.py", "file_name": "freeze.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 59, "span_ids": ["add_parser"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    FREEZE_HELP = \"Freeze stages or .dvc files.\"\n    freeze_parser = subparsers.add_parser(\n        \"freeze\",\n        parents=[parent_parser],\n        description=append_doc_link(FREEZE_HELP, \"freeze\"),\n        help=FREEZE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    freeze_parser.add_argument(\n        \"targets\", nargs=\"+\", help=\"Stages or .dvc files to freeze\",\n    ).complete = completion.DVC_FILE\n    freeze_parser.set_defaults(func=CmdFreeze)\n\n    UNFREEZE_HELP = \"Unfreeze stages or .dvc files.\"\n    unfreeze_parser = subparsers.add_parser(\n        \"unfreeze\",\n        parents=[parent_parser],\n        description=append_doc_link(UNFREEZE_HELP, \"unfreeze\"),\n        help=UNFREEZE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    unfreeze_parser.add_argument(\n        \"targets\", nargs=\"+\", help=\"Stages or .dvc files to unfreeze\",\n    ).complete = completion.DVC_FILE\n    unfreeze_parser.set_defaults(func=CmdUnfreeze)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py__show_diff__show_diff.return.table_header_rows_markd": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py__show_diff__show_diff.return.table_header_rows_markd", "embedding": null, "metadata": {"file_path": "dvc/command/metrics.py", "file_name": "metrics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 109, "span_ids": ["_show_diff"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _show_diff(diff, markdown=False, no_path=False, precision=None):\n    from collections import OrderedDict\n\n    from dvc.utils.diff import table\n\n    if precision is None:\n        precision = DEFAULT_PRECISION\n\n    def _round(val):\n        if isinstance(val, float):\n            return round(val, precision)\n\n        return val\n\n    rows = []\n    for fname, mdiff in diff.items():\n        sorted_mdiff = OrderedDict(sorted(mdiff.items()))\n        for metric, change in sorted_mdiff.items():\n            row = [] if no_path else [fname]\n            row.append(metric)\n            row.append(_round(change.get(\"old\")))\n            row.append(_round(change[\"new\"]))\n            row.append(_round(change.get(\"diff\")))\n            rows.append(row)\n\n    header = [] if no_path else [\"Path\"]\n    header.append(\"Metric\")\n    header.extend([\"Old\", \"New\"])\n    header.append(\"Change\")\n\n    return table(header, rows, markdown)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/params.py_argparse__show_diff.return.table_header_rows_markd": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/params.py_argparse__show_diff.return.table_header_rows_markd", "embedding": null, "metadata": {"file_path": "dvc/command/params.py", "file_name": "params.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["imports", "_show_diff"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\nfrom collections import OrderedDict\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link, fix_subparsers\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\ndef _show_diff(diff, markdown=False, no_path=False):\n    from dvc.utils.diff import table\n\n    rows = []\n    for fname, pdiff in diff.items():\n        sorted_pdiff = OrderedDict(sorted(pdiff.items()))\n        for param, change in sorted_pdiff.items():\n            row = [] if no_path else [fname]\n            row.append(param)\n            row.append(change[\"old\"])\n            row.append(change[\"new\"])\n            rows.append(row)\n\n    header = [] if no_path else [\"Path\"]\n    header.append(\"Param\")\n    header.append(\"Old\")\n    header.append(\"New\")\n\n    return table(header, rows, markdown)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/params.py_CmdParamsDiff_CmdParamsDiff.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/params.py_CmdParamsDiff_CmdParamsDiff.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/params.py", "file_name": "params.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 58, "span_ids": ["CmdParamsDiff.run", "CmdParamsDiff"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdParamsDiff(CmdBase):\n    UNINITIALIZED = True\n\n    def run(self):\n        try:\n            diff = self.repo.params.diff(\n                a_rev=self.args.a_rev,\n                b_rev=self.args.b_rev,\n                targets=self.args.targets,\n                all=self.args.all,\n            )\n\n            if self.args.show_json:\n                import json\n\n                logger.info(json.dumps(diff))\n            else:\n                table = _show_diff(diff, self.args.show_md, self.args.no_path)\n                if table:\n                    logger.info(table)\n\n        except DvcException:\n            logger.exception(\"failed to show params diff\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_argparse_DIV_HTML._div_id_id_div": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_argparse_DIV_HTML._div_id_id_div", "embedding": null, "metadata": {"file_path": "dvc/command/plots.py", "file_name": "plots.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["imports"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\nimport os\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link, fix_subparsers\nfrom dvc.exceptions import DvcException\nfrom dvc.schema import PLOT_PROPS\nfrom dvc.utils import format_link\n\nlogger = logging.getLogger(__name__)\n\nPAGE_HTML = \"\"\"<!DOCTYPE html>\n<html>\n<head>\n    <title>DVC Plot</title>\n    <script src=\"https://cdn.jsdelivr.net/npm/vega@5.10.0\"></script>\n    <script src=\"https://cdn.jsdelivr.net/npm/vega-lite@4.8.1\"></script>\n    <script src=\"https://cdn.jsdelivr.net/npm/vega-embed@6.5.1\"></script>\n</head>\n<body>\n    {divs}\n</body>\n</html>\"\"\"\n\nDIV_HTML = \"\"\"<div id = \"{id}\"></div>\n<script type = \"text/javascript\">\n    var spec = {vega_json};\n    vegaEmbed('#{id}', spec);\n</script>\"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_CmdPlots_CmdPlots.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_CmdPlots_CmdPlots.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/plots.py", "file_name": "plots.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 78, "span_ids": ["CmdPlots._func", "CmdPlots.run", "CmdPlots", "CmdPlots._props"], "tokens": 333}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdPlots(CmdBase):\n    def _func(self, *args, **kwargs):\n        raise NotImplementedError\n\n    def _props(self):\n        # Pass only props specified by user, to not shadow ones from plot def\n        props = {p: getattr(self.args, p) for p in PLOT_PROPS}\n        return {k: v for k, v in props.items() if v is not None}\n\n    def run(self):\n        if self.args.show_vega:\n            if not self.args.targets:\n                logger.error(\"please specify a target for `--show-vega`\")\n                return 1\n            if len(self.args.targets) > 1:\n                logger.error(\n                    \"you can only specify one target for `--show-vega`\"\n                )\n                return 1\n\n        try:\n            plots = self._func(targets=self.args.targets, props=self._props())\n\n            if self.args.show_vega:\n                target = self.args.targets[0]\n                logger.info(plots[target])\n                return 0\n\n            divs = [\n                DIV_HTML.format(id=f\"plot{i}\", vega_json=plot)\n                for i, plot in enumerate(plots.values())\n            ]\n            html = PAGE_HTML.format(divs=\"\\n\".join(divs))\n            path = self.args.out or \"plots.html\"\n\n            path = os.path.join(os.getcwd(), path)\n            with open(path, \"w\") as fobj:\n                fobj.write(html)\n\n            logger.info(f\"file://{path}\")\n\n        except DvcException:\n            logger.exception(\"\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_CmdPlotsShow_CmdPlotsModify.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_CmdPlotsShow_CmdPlotsModify.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/plots.py", "file_name": "plots.py", "file_type": "text/x-python", "category": "implementation", "start_line": 82, "end_line": 106, "span_ids": ["CmdPlotsDiff._func", "CmdPlotsShow._func", "CmdPlotsModify.run", "CmdPlotsShow", "CmdPlotsModify", "CmdPlotsDiff"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdPlotsShow(CmdPlots):\n    UNINITIALIZED = True\n\n    def _func(self, *args, **kwargs):\n        return self.repo.plots.show(*args, **kwargs)\n\n\nclass CmdPlotsDiff(CmdPlots):\n    UNINITIALIZED = True\n\n    def _func(self, *args, **kwargs):\n        return self.repo.plots.diff(\n            *args,\n            revs=self.args.revisions,\n            experiment=self.args.experiment,\n            **kwargs,\n        )\n\n\nclass CmdPlotsModify(CmdPlots):\n    def run(self):\n        self.repo.plots.modify(\n            self.args.target, props=self._props(), unset=self.args.unset,\n        )\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_add_parser_add_parser.plots_modify_parser_set_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py_add_parser_add_parser.plots_modify_parser_set_d", "embedding": null, "metadata": {"file_path": "dvc/command/plots.py", "file_name": "plots.py", "file_type": "text/x-python", "category": "implementation", "start_line": 107, "end_line": 197, "span_ids": ["add_parser"], "tokens": 701}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    PLOTS_HELP = (\n        \"Commands to visualize and compare plot metrics in structured files \"\n        \"(JSON, YAML, CSV, TSV)\"\n    )\n\n    plots_parser = subparsers.add_parser(\n        \"plots\",\n        parents=[parent_parser],\n        description=append_doc_link(PLOTS_HELP, \"plots\"),\n        help=PLOTS_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    plots_subparsers = plots_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc plots CMD --help` to display command-specific help.\",\n    )\n\n    fix_subparsers(plots_subparsers)\n\n    SHOW_HELP = \"Generate plots from metrics files.\"\n    plots_show_parser = plots_subparsers.add_parser(\n        \"show\",\n        parents=[parent_parser],\n        description=append_doc_link(SHOW_HELP, \"plots/show\"),\n        help=SHOW_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    plots_show_parser.add_argument(\n        \"targets\",\n        nargs=\"*\",\n        help=\"Files to visualize (supports any file, \"\n        \"even when not found as `plots` in `dvc.yaml`). \"\n        \"Shows all plots by default.\",\n    ).complete = completion.FILE\n    _add_props_arguments(plots_show_parser)\n    _add_output_arguments(plots_show_parser)\n    plots_show_parser.set_defaults(func=CmdPlotsShow)\n\n    PLOTS_DIFF_HELP = (\n        \"Show multiple versions of plot metrics \"\n        \"by plotting them in a single image.\"\n    )\n    plots_diff_parser = plots_subparsers.add_parser(\n        \"diff\",\n        parents=[parent_parser],\n        description=append_doc_link(PLOTS_DIFF_HELP, \"plots/diff\"),\n        help=PLOTS_DIFF_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    plots_diff_parser.add_argument(\n        \"--targets\",\n        nargs=\"*\",\n        help=\"Files to visualize (supports any file, \"\n        \"even when not found as `plots` in `dvc.yaml`). \"\n        \"Shows all plots by default.\",\n        metavar=\"<path>\",\n    ).complete = completion.FILE\n    plots_diff_parser.add_argument(\n        \"-e\",\n        \"--experiment\",\n        action=\"store_true\",\n        default=False,\n        help=argparse.SUPPRESS,\n    )\n    plots_diff_parser.add_argument(\n        \"revisions\", nargs=\"*\", default=None, help=\"Git commits to plot from\",\n    )\n    _add_props_arguments(plots_diff_parser)\n    _add_output_arguments(plots_diff_parser)\n    plots_diff_parser.set_defaults(func=CmdPlotsDiff)\n\n    PLOTS_MODIFY_HELP = \"Modify display properties of plot metrics files.\"\n    plots_modify_parser = plots_subparsers.add_parser(\n        \"modify\",\n        parents=[parent_parser],\n        description=append_doc_link(PLOTS_MODIFY_HELP, \"plots/modify\"),\n        help=PLOTS_MODIFY_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    plots_modify_parser.add_argument(\n        \"target\", help=\"Metric file to set properties to\",\n    ).complete = completion.FILE\n    _add_props_arguments(plots_modify_parser)\n    plots_modify_parser.add_argument(\n        \"--unset\",\n        nargs=\"*\",\n        metavar=\"<property>\",\n        help=\"Unset one or more display properties.\",\n    )\n    plots_modify_parser.set_defaults(func=CmdPlotsModify)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py__add_props_arguments_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/plots.py__add_props_arguments_", "embedding": null, "metadata": {"file_path": "dvc/command/plots.py", "file_name": "plots.py", "file_type": "text/x-python", "category": "implementation", "start_line": 182, "end_line": 234, "span_ids": ["_add_output_arguments", "_add_props_arguments"], "tokens": 347}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _add_props_arguments(parser):\n    parser.add_argument(\n        \"-t\",\n        \"--template\",\n        nargs=\"?\",\n        default=None,\n        help=(\n            \"Special JSON or HTML schema file to inject with the data. \"\n            \"See {}\".format(\n                format_link(\"https://man.dvc.org/plots#plot-templates\")\n            )\n        ),\n        metavar=\"<path>\",\n    ).complete = completion.FILE\n    parser.add_argument(\n        \"-x\", default=None, help=\"Field name for X axis.\", metavar=\"<field>\"\n    )\n    parser.add_argument(\n        \"-y\", default=None, help=\"Field name for Y axis.\", metavar=\"<field>\"\n    )\n    parser.add_argument(\n        \"--no-header\",\n        action=\"store_false\",\n        dest=\"header\",\n        default=None,  # Use default None to distinguish when it's not used\n        help=\"Provided CSV or TSV datafile does not have a header.\",\n    )\n    parser.add_argument(\n        \"--title\", default=None, metavar=\"<text>\", help=\"Plot title.\"\n    )\n    parser.add_argument(\n        \"--x-label\", default=None, help=\"X axis label\", metavar=\"<text>\"\n    )\n    parser.add_argument(\n        \"--y-label\", default=None, help=\"Y axis label\", metavar=\"<text>\"\n    )\n\n\ndef _add_output_arguments(parser):\n    parser.add_argument(\n        \"-o\",\n        \"--out\",\n        default=None,\n        help=\"Destination path to save plots to\",\n        metavar=\"<path>\",\n    ).complete = completion.DIR\n    parser.add_argument(\n        \"--show-vega\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show output in Vega format.\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_argparse_CmdRemote._check_exists.if_self_args_name_not_in_.raise_ConfigError_f_remot": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_argparse_CmdRemote._check_exists.if_self_args_name_not_in_.raise_ConfigError_f_remot", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 21, "span_ids": ["imports", "CmdRemote", "CmdRemote.__init__", "CmdRemote._check_exists"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command.base import append_doc_link, fix_subparsers\nfrom dvc.command.config import CmdConfig\nfrom dvc.config import ConfigError, merge\nfrom dvc.utils import format_link\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdRemote(CmdConfig):\n    def __init__(self, args):\n        super().__init__(args)\n\n        if getattr(self.args, \"name\", None):\n            self.args.name = self.args.name.lower()\n\n    def _check_exists(self, conf):\n        if self.args.name not in conf[\"remote\"]:\n            raise ConfigError(f\"remote '{self.args.name}' doesn't exist.\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteRename_CmdRemoteRename.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteRename_CmdRemoteRename.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 117, "end_line": 144, "span_ids": ["CmdRemoteRename.run", "CmdRemoteRename", "CmdRemoteRename._rename_default"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdRemoteRename(CmdRemote):\n    def _rename_default(self, conf):\n        if conf[\"core\"].get(\"remote\") == self.args.name:\n            conf[\"core\"][\"remote\"] = self.args.new\n\n    def run(self):\n        all_config = self.config.load_config_to_level(None)\n        if self.args.new in all_config.get(\"remote\", {}):\n            raise ConfigError(\n                \"Rename failed. Remote name '{}' already exists.\".format(\n                    {self.args.new}\n                )\n            )\n\n        with self.config.edit(self.args.level) as conf:\n            self._check_exists(conf)\n            conf[\"remote\"][self.args.new] = conf[\"remote\"][self.args.name]\n            del conf[\"remote\"][self.args.name]\n            self._rename_default(conf)\n\n        up_to_level = self.args.level or \"repo\"\n        for level in reversed(self.config.LEVELS):\n            if level == up_to_level:\n                break\n            with self.config.edit(level) as level_conf:\n                self._rename_default(level_conf)\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_add_parser_add_parser.REMOTE_REMOVE_HELP._Remove_a_data_remote_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_add_parser_add_parser.REMOTE_REMOVE_HELP._Remove_a_data_remote_", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 145, "end_line": 249, "span_ids": ["add_parser"], "tokens": 782}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    from dvc.command.config import parent_config_parser\n\n    REMOTE_HELP = \"Set up and manage data remotes.\"\n    remote_parser = subparsers.add_parser(\n        \"remote\",\n        parents=[parent_parser],\n        description=append_doc_link(REMOTE_HELP, \"remote\"),\n        help=REMOTE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n\n    remote_subparsers = remote_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc remote CMD --help` for \" \"command-specific help.\",\n    )\n\n    fix_subparsers(remote_subparsers)\n\n    REMOTE_ADD_HELP = \"Add a new data remote.\"\n    remote_add_parser = remote_subparsers.add_parser(\n        \"add\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(REMOTE_ADD_HELP, \"remote/add\"),\n        help=REMOTE_ADD_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remote_add_parser.add_argument(\"name\", help=\"Name of the remote\")\n    remote_add_parser.add_argument(\n        \"url\",\n        help=\"Remote location. See full list of supported URLs at {}\".format(\n            format_link(\"https://man.dvc.org/remote\")\n        ),\n    )\n    remote_add_parser.add_argument(\n        \"-d\",\n        \"--default\",\n        action=\"store_true\",\n        default=False,\n        help=\"Set as default remote.\",\n    )\n    remote_add_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Force overwriting existing configs\",\n    )\n    remote_add_parser.set_defaults(func=CmdRemoteAdd)\n\n    REMOTE_DEFAULT_HELP = \"Set/unset the default data remote.\"\n    remote_default_parser = remote_subparsers.add_parser(\n        \"default\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(REMOTE_DEFAULT_HELP, \"remote/default\"),\n        help=REMOTE_DEFAULT_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remote_default_parser.add_argument(\n        \"name\", nargs=\"?\", help=\"Name of the remote\"\n    )\n    remote_default_parser.add_argument(\n        \"-u\",\n        \"--unset\",\n        action=\"store_true\",\n        default=False,\n        help=\"Unset default remote.\",\n    )\n    remote_default_parser.set_defaults(func=CmdRemoteDefault)\n\n    REMOTE_MODIFY_HELP = \"Modify the configuration of a data remote.\"\n    remote_modify_parser = remote_subparsers.add_parser(\n        \"modify\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(REMOTE_MODIFY_HELP, \"remote/modify\"),\n        help=REMOTE_MODIFY_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remote_modify_parser.add_argument(\"name\", help=\"Name of the remote\")\n    remote_modify_parser.add_argument(\n        \"option\", help=\"Name of the option to modify.\"\n    )\n    remote_modify_parser.add_argument(\n        \"value\", nargs=\"?\", help=\"(optional) Value of the option.\"\n    )\n    remote_modify_parser.add_argument(\n        \"-u\",\n        \"--unset\",\n        default=False,\n        action=\"store_true\",\n        help=\"Unset option.\",\n    )\n    remote_modify_parser.set_defaults(func=CmdRemoteModify)\n\n    REMOTE_LIST_HELP = \"List all available data remotes.\"\n    remote_list_parser = remote_subparsers.add_parser(\n        \"list\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(REMOTE_LIST_HELP, \"remote/list\"),\n        help=REMOTE_LIST_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remote_list_parser.set_defaults(func=CmdRemoteList)\n\n    REMOTE_REMOVE_HELP = \"Remove a data remote.\"\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_add_parser.remote_remove_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_add_parser.remote_remove_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 245, "end_line": 267, "span_ids": ["add_parser"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    remote_remove_parser = remote_subparsers.add_parser(\n        \"remove\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(REMOTE_REMOVE_HELP, \"remote/remove\"),\n        help=REMOTE_REMOVE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remote_remove_parser.add_argument(\n        \"name\", help=\"Name of the remote to remove.\"\n    )\n    remote_remove_parser.set_defaults(func=CmdRemoteRemove)\n    REMOTE_RENAME_HELP = \"Rename a DVC remote\"\n    remote_rename_parser = remote_subparsers.add_parser(\n        \"rename\",\n        parents=[parent_config_parser, parent_parser],\n        description=append_doc_link(REMOTE_RENAME_HELP, \"remote/rename\"),\n        help=REMOTE_RENAME_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remote_rename_parser.add_argument(\"name\", help=\"Remote to be renamed\")\n    remote_rename_parser.add_argument(\"new\", help=\"New name of the remote\")\n    remote_rename_parser.set_defaults(func=CmdRemoteRename)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remove.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remove.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/remove.py", "file_name": "remove.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 44, "span_ids": ["CmdRemove.run", "imports", "add_parser", "CmdRemove"], "tokens": 261}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdRemove(CmdBase):\n    def run(self):\n        for target in self.args.targets:\n            try:\n                self.repo.remove(target, outs=self.args.outs)\n            except DvcException:\n                logger.exception(f\"failed to remove '{target}'\")\n                return 1\n        return 0\n\n\ndef add_parser(subparsers, parent_parser):\n    REMOVE_HELP = (\n        \"Remove stages from dvc.yaml and/or\"\n        \" stop tracking files or directories.\"\n    )\n    remove_parser = subparsers.add_parser(\n        \"remove\",\n        parents=[parent_parser],\n        description=append_doc_link(REMOVE_HELP, \"remove\"),\n        help=REMOVE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    remove_parser.add_argument(\n        \"--outs\",\n        action=\"store_true\",\n        default=False,\n        help=\"Remove outputs as well.\",\n    )\n    remove_parser.add_argument(\n        \"targets\", nargs=\"+\", help=\"DVC-files to remove.\",\n    ).complete = completion.DVC_FILE\n    remove_parser.set_defaults(func=CmdRemove)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_CmdRun._parsed_cmd_CmdRun._quote_argument.return.f_argument_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_CmdRun._parsed_cmd_CmdRun._quote_argument.return.f_argument_", "embedding": null, "metadata": {"file_path": "dvc/command/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 64, "end_line": 83, "span_ids": ["CmdRun._parsed_cmd", "CmdRun._quote_argument"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdRun(CmdBase):\n\n    def _parsed_cmd(self):\n        \"\"\"\n        We need to take into account two cases:\n\n        - ['python code.py foo bar']: Used mainly with dvc as a library\n        - ['echo', 'foo bar']: List of arguments received from the CLI\n\n        The second case would need quoting, as it was passed through:\n                dvc run echo \"foo bar\"\n        \"\"\"\n        if len(self.args.command) < 2:\n            return \" \".join(self.args.command)\n\n        return \" \".join(self._quote_argument(arg) for arg in self.args.command)\n\n    def _quote_argument(self, argument):\n        if \" \" not in argument or '\"' in argument:\n            return argument\n\n        return f'\"{argument}\"'", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas_AsciiCanvas.draw.return.joined_lines": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dagascii.py_AsciiCanvas_AsciiCanvas.draw.return.joined_lines", "embedding": null, "metadata": {"file_path": "dvc/dagascii.py", "file_name": "dagascii.py", "file_type": "text/x-python", "category": "implementation", "start_line": 78, "end_line": 101, "span_ids": ["AsciiCanvas", "AsciiCanvas.__init__", "AsciiCanvas.draw"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AsciiCanvas:\n    \"\"\"Class for drawing in ASCII.\n\n    Args:\n        cols (int): number of columns in the canvas. Should be > 1.\n        lines (int): number of lines in the canvas. Should be > 1.\n    \"\"\"\n\n    TIMEOUT = 10\n\n    def __init__(self, cols, lines):\n        assert cols > 1\n        assert lines > 1\n\n        self.cols = cols\n        self.lines = lines\n\n        self.canvas = [[\" \"] * cols for line in range(lines)]\n\n    def draw(self):\n        \"\"\"Draws ASCII canvas on the screen.\"\"\"\n        lines = map(\"\".join, self.canvas)\n        joined_lines = os.linesep.join(lines)\n        return joined_lines", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/__init__.py__merge_params_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/__init__.py__merge_params_", "embedding": null, "metadata": {"file_path": "dvc/dependency/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 91, "end_line": 117, "span_ids": ["_merge_params", "loads_params"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _merge_params(s_list):\n    d = defaultdict(list)\n    default_file = ParamsDependency.DEFAULT_PARAMS_FILE\n    for key in s_list:\n        if isinstance(key, str):\n            d[default_file].append(key)\n            continue\n        if not isinstance(key, dict):\n            msg = \"Only list of str/dict is supported. Got: \"\n            msg += f\"'{type(key).__name__}'.\"\n            raise ValueError(msg)\n\n        for k, params in key.items():\n            if not isinstance(params, list):\n                msg = \"Expected list of params for custom params file \"\n                msg += f\"'{k}', got '{type(params).__name__}'.\"\n                raise ValueError(msg)\n            d[k].extend(params)\n    return d\n\n\ndef loads_params(stage, s_list):\n    d = _merge_params(s_list)\n    return [\n        ParamsDependency(stage, path, params) for path, params in d.items()\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/azure.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/azure.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 9, "span_ids": ["imports", "AzureDependency"], "tokens": 43}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.base import BaseOutput\n\nfrom ..tree.azure import AzureTree\n\n\nclass AzureDependency(BaseDependency, BaseOutput):\n    TREE_CLS = AzureTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_CircularDependencyError_ArgumentDuplicationError.__init__.super___init___f_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_CircularDependencyError_ArgumentDuplicationError.__init__.super___init___f_file_", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 104, "span_ids": ["ArgumentDuplicationError", "ArgumentDuplicationError.__init__", "CircularDependencyError", "CircularDependencyError.__init__"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CircularDependencyError(DvcException):\n    \"\"\"Thrown if a file/directory specified both as an output and as a\n    dependency.\n\n    Args:\n        dependency (str): path to the dependency.\n    \"\"\"\n\n    def __init__(self, dependency):\n        assert isinstance(dependency, str)\n\n        msg = \"'{}' is specified as an output and as a dependency.\"\n        super().__init__(msg.format(dependency))\n\n\nclass ArgumentDuplicationError(DvcException):\n    \"\"\"Thrown if a file/directory is specified as a dependency/output more\n    than once.\n\n    Args:\n        path (str): path to the file/directory.\n    \"\"\"\n\n    def __init__(self, path):\n        assert isinstance(path, str)\n        super().__init__(f\"file '{path}' is specified more than once.\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_PathMissingError_PathMissingError.__init__.self.dvc_only.dvc_only": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_PathMissingError_PathMissingError.__init__.self.dvc_only.dvc_only", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 302, "end_line": 315, "span_ids": ["PathMissingError", "PathMissingError.__init__"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PathMissingError(DvcException):\n    default_msg = (\n        \"The path '{}' does not exist in the target repository '{}'\"\n        \" neither as a DVC output nor as a Git-tracked file.\"\n    )\n    default_msg_dvc_only = (\n        \"The path '{}' does not exist in the target repository '{}'\"\n        \" as an DVC output.\"\n    )\n\n    def __init__(self, path, repo, dvc_only=False):\n        msg = self.default_msg if not dvc_only else self.default_msg_dvc_only\n        super().__init__(msg.format(path, repo))\n        self.dvc_only = dvc_only", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_logging_DvcIgnore.__call__.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_logging_DvcIgnore.__call__.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["imports", "DvcIgnore", "DvcIgnore.__call__"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport re\nfrom collections import namedtuple\nfrom itertools import groupby, takewhile\n\nfrom pathspec.patterns import GitWildMatchPattern\nfrom pathspec.util import normalize_file\n\nfrom dvc.path_info import PathInfo\nfrom dvc.pathspec_math import PatternInfo, merge_patterns\nfrom dvc.system import System\nfrom dvc.utils import relpath\nfrom dvc.utils.collections import PathStringTrie\n\nlogger = logging.getLogger(__name__)\n\n\nclass DvcIgnore:\n    DVCIGNORE_FILE = \".dvcignore\"\n\n    def __call__(self, root, dirs, files):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py__Manages_logging_config_addLoggingLevel.setattr_logging_methodNa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py__Manages_logging_config_addLoggingLevel.setattr_logging_methodNa", "embedding": null, "metadata": {"file_path": "dvc/logger.py", "file_name": "logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 46, "span_ids": ["addLoggingLevel", "docstring"], "tokens": 309}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages logging configuration for DVC repo.\"\"\"\n\nimport logging.config\nimport logging.handlers\n\nimport colorama\n\nfrom dvc.progress import Tqdm\n\nFOOTER = (\n    \"\\n{yellow}Having any troubles?{nc}\"\n    \" Hit us up at {blue}https://dvc.org/support{nc},\"\n    \" we are always happy to help!\"\n).format(\n    blue=colorama.Fore.BLUE,\n    nc=colorama.Fore.RESET,\n    yellow=colorama.Fore.YELLOW,\n)\n\n\ndef addLoggingLevel(levelName, levelNum, methodName=None):\n    \"\"\"\n    Adds a new logging level to the `logging` module and the\n    currently configured logging class.\n\n    Based on https://stackoverflow.com/questions/2183233\n    \"\"\"\n    if methodName is None:\n        methodName = levelName.lower()\n\n    assert not hasattr(logging, levelName)\n    assert not hasattr(logging, methodName)\n    assert not hasattr(logging.getLoggerClass(), methodName)\n\n    def logForLevel(self, message, *args, **kwargs):\n        if self.isEnabledFor(levelNum):\n            # pylint: disable=protected-access\n            self._log(levelNum, message, args, **kwargs)\n\n    def logToRoot(message, *args, **kwargs):\n        logging.log(levelNum, message, *args, **kwargs)\n\n    logging.addLevelName(levelNum, levelName)\n    setattr(logging, levelName, levelNum)\n    setattr(logging.getLoggerClass(), methodName, logForLevel)\n    setattr(logging, methodName, logToRoot)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_LoggingException_ColorFormatter.color_code._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_LoggingException_ColorFormatter.color_code._", "embedding": null, "metadata": {"file_path": "dvc/logger.py", "file_name": "logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 80, "span_ids": ["LoggingException.__init__", "ColorFormatter", "excludeFilter", "LoggingException"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LoggingException(Exception):\n    def __init__(self, record):\n        msg = \"failed to log {}\".format(str(record))\n        super().__init__(msg)\n\n\ndef excludeFilter(level):\n    class ExcludeLevelFilter(logging.Filter):\n        def filter(self, record):\n            return record.levelno < level\n\n    return ExcludeLevelFilter\n\n\nclass ColorFormatter(logging.Formatter):\n    \"\"\"Spit out colored text in supported terminals.\n\n    colorama__ makes ANSI escape character sequences work under Windows.\n    See the colorama documentation for details.\n\n    __ https://pypi.python.org/pypi/colorama\n\n    If record has an extra `tb_only` attribute, it will not show the\n    exception cause, just the message and the traceback.\n    \"\"\"\n\n    color_code = {\n        \"TRACE\": colorama.Fore.GREEN,\n        \"DEBUG\": colorama.Fore.BLUE,\n        \"WARNING\": colorama.Fore.YELLOW,\n        \"ERROR\": colorama.Fore.RED,\n        \"CRITICAL\": colorama.Fore.RED,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_loadd_from_loadd_from.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_loadd_from_loadd_from.return.ret", "embedding": null, "metadata": {"file_path": "dvc/output/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 135, "end_line": 160, "span_ids": ["loadd_from"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def loadd_from(stage, d_list):\n    ret = []\n    for d in d_list:\n        p = d.pop(BaseOutput.PARAM_PATH)\n        cache = d.pop(BaseOutput.PARAM_CACHE, True)\n        metric = d.pop(BaseOutput.PARAM_METRIC, False)\n        plot = d.pop(BaseOutput.PARAM_PLOT, False)\n        persist = d.pop(BaseOutput.PARAM_PERSIST, False)\n        checkpoint = d.pop(BaseOutput.PARAM_CHECKPOINT, False)\n        desc = d.pop(BaseOutput.PARAM_DESC, False)\n        isexec = d.pop(BaseOutput.PARAM_ISEXEC, False)\n        ret.append(\n            _get(\n                stage,\n                p,\n                info=d,\n                cache=cache,\n                metric=metric,\n                plot=plot,\n                persist=persist,\n                checkpoint=checkpoint,\n                desc=desc,\n                isexec=isexec,\n            )\n        )\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_loads_from__merge_data.return.d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_loads_from__merge_data.return.d", "embedding": null, "metadata": {"file_path": "dvc/output/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 163, "end_line": 208, "span_ids": ["_split_dict", "loads_from", "_merge_data"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def loads_from(\n    stage,\n    s_list,\n    use_cache=True,\n    metric=False,\n    plot=False,\n    persist=False,\n    checkpoint=False,\n    isexec=False,\n):\n    return [\n        _get(\n            stage,\n            s,\n            info={},\n            cache=use_cache,\n            metric=metric,\n            plot=plot,\n            persist=persist,\n            checkpoint=checkpoint,\n            isexec=isexec,\n        )\n        for s in s_list\n    ]\n\n\ndef _split_dict(d, keys):\n    return project(d, keys), project(d, d.keys() - keys)\n\n\ndef _merge_data(s_list):\n    d = defaultdict(dict)\n    for key in s_list:\n        if isinstance(key, str):\n            d[key].update({})\n            continue\n        if not isinstance(key, dict):\n            raise ValueError(f\"'{type(key).__name__}' not supported.\")\n\n        for k, flags in key.items():\n            if not isinstance(flags, dict):\n                raise ValueError(\n                    f\"Expected dict for '{k}', got: '{type(flags).__name__}'\"\n                )\n            d[k].update(flags)\n    return d", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_load_from_pipeline_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_load_from_pipeline_", "embedding": null, "metadata": {"file_path": "dvc/output/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 202, "end_line": 227, "span_ids": ["load_from_pipeline"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@collecting\ndef load_from_pipeline(stage, s_list, typ=\"outs\"):\n    if typ not in (stage.PARAM_OUTS, stage.PARAM_METRICS, stage.PARAM_PLOTS):\n        raise ValueError(f\"'{typ}' key is not allowed for pipeline files.\")\n\n    metric = typ == stage.PARAM_METRICS\n    plot = typ == stage.PARAM_PLOTS\n\n    d = _merge_data(s_list)\n\n    for path, flags in d.items():\n        plt_d = {}\n        if plot:\n            from dvc.schema import PLOT_PROPS\n\n            plt_d, flags = _split_dict(flags, keys=PLOT_PROPS.keys())\n        extra = project(\n            flags,\n            [\n                BaseOutput.PARAM_CACHE,\n                BaseOutput.PARAM_PERSIST,\n                BaseOutput.PARAM_CHECKPOINT,\n            ],\n        )\n        yield _get(stage, path, {}, plot=plt_d or plot, metric=metric, **extra)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.collect_used_dir_cache_BaseOutput.collect_used_dir_cache.return.cache": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.collect_used_dir_cache_BaseOutput.collect_used_dir_cache.return.cache", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 418, "end_line": 475, "span_ids": ["BaseOutput.collect_used_dir_cache"], "tokens": 418}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    def collect_used_dir_cache(\n        self, remote=None, force=False, jobs=None, filter_info=None\n    ):\n        \"\"\"Get a list of `info`s related to the given directory.\n\n        - Pull the directory entry from the remote cache if it was changed.\n\n        Example:\n\n            Given the following commands:\n\n            $ echo \"foo\" > directory/foo\n            $ echo \"bar\" > directory/bar\n            $ dvc add directory\n\n            It will return a NamedCache like:\n\n            nc = NamedCache()\n            nc.add(self.scheme, 'c157a79031e1', 'directory/foo')\n            nc.add(self.scheme, 'd3b07384d113', 'directory/bar')\n        \"\"\"\n\n        cache = NamedCache()\n\n        try:\n            self.get_dir_cache(jobs=jobs, remote=remote)\n        except DvcException:\n            logger.debug(f\"failed to pull cache for '{self}'\")\n\n        if self.cache.changed_cache_file(self.hash_info):\n            msg = (\n                \"Missing cache for directory '{}'. \"\n                \"Cache for files inside will be lost. \"\n                \"Would you like to continue? Use '-f' to force.\"\n            )\n            if not force and not prompt.confirm(msg.format(self.path_info)):\n                raise CollectCacheError(\n                    \"unable to fully collect used cache\"\n                    \" without cache for directory '{}'\".format(self)\n                )\n            else:\n                return cache\n\n        path = str(self.path_info)\n        filter_path = str(filter_info) if filter_info else None\n        is_win = os.name == \"nt\"\n        for entry_relpath, entry_hash_info in self.dir_cache.items():\n            if is_win:\n                entry_relpath = entry_relpath.replace(\"/\", os.sep)\n            entry_path = os.path.join(path, entry_relpath)\n            if (\n                not filter_path\n                or entry_path == filter_path\n                or entry_path.startswith(filter_path + os.sep)\n            ):\n                cache.add(self.scheme, entry_hash_info.value, entry_path)\n\n        return cache", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/local.py_logging_LocalOutput._parse_path.return.self_TREE_CLS_PATH_CLS_ab": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/local.py_logging_LocalOutput._parse_path.return.self_TREE_CLS_PATH_CLS_ab", "embedding": null, "metadata": {"file_path": "dvc/output/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 48, "span_ids": ["imports", "LocalOutput.__init__", "LocalOutput", "LocalOutput._parse_path"], "tokens": 370}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom urllib.parse import urlparse\n\nfrom dvc.exceptions import DvcException\nfrom dvc.istextfile import istextfile\nfrom dvc.output.base import BaseOutput\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import path_isin\n\nfrom ..tree.local import LocalTree\n\nlogger = logging.getLogger(__name__)\n\n\nclass LocalOutput(BaseOutput):\n    TREE_CLS = LocalTree\n    sep = os.sep\n\n    def __init__(self, stage, path, *args, **kwargs):\n        if stage and path_isin(path, stage.repo.root_dir):\n            path = relpath(path, stage.wdir)\n\n        super().__init__(stage, path, *args, **kwargs)\n        if (\n            self.is_in_repo\n            and self.repo\n            and isinstance(self.repo.tree, LocalTree)\n        ):\n            self.tree = self.repo.tree\n\n    def _parse_path(self, tree, path):\n        parsed = urlparse(path)\n        if parsed.scheme == \"remote\":\n            p = tree.path_info / parsed.path.lstrip(\"/\")\n        else:\n            # NOTE: we can path either from command line or .dvc file,\n            # so we should expect both posix and windows style paths.\n            # PathInfo accepts both, i.e. / works everywhere, \\ only on win.\n            #\n            # FIXME: if we have Windows path containing / or posix one with \\\n            # then we have #2059 bug and can't really handle that.\n            p = self.TREE_CLS.PATH_CLS(path)\n            if self.stage and not p.is_absolute():\n                p = self.stage.wdir / p\n\n        abs_p = os.path.abspath(os.path.normpath(p))\n        return self.TREE_CLS.PATH_CLS(abs_p)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/local.py_LocalOutput.__str___LocalOutput.dumpd.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/local.py_LocalOutput.__str___LocalOutput.dumpd.return.ret", "embedding": null, "metadata": {"file_path": "dvc/output/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 44, "end_line": 72, "span_ids": ["LocalOutput.fspath", "LocalOutput.is_in_repo", "LocalOutput.dumpd", "LocalOutput.__str__"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalOutput(BaseOutput):\n\n    def __str__(self):\n        if not self.repo or not self.is_in_repo:\n            return str(self.def_path)\n\n        cur_dir = os.getcwd()\n        if path_isin(cur_dir, self.repo.root_dir):\n            return relpath(self.path_info, cur_dir)\n\n        return relpath(self.path_info, self.repo.root_dir)\n\n    @property\n    def fspath(self):\n        return self.path_info.fspath\n\n    @property\n    def is_in_repo(self):\n        def_scheme = urlparse(self.def_path).scheme\n        return def_scheme != \"remote\" and not os.path.isabs(self.def_path)\n\n    def dumpd(self):\n        ret = super().dumpd()\n        if self.is_in_repo:\n            path = self.path_info.relpath(self.stage.wdir).as_posix()\n        else:\n            path = self.def_path\n\n        ret[self.PARAM_PATH] = path\n\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/local.py_LocalOutput.verify_metric_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/local.py_LocalOutput.verify_metric_", "embedding": null, "metadata": {"file_path": "dvc/output/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 80, "end_line": 97, "span_ids": ["LocalOutput.verify_metric"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalOutput(BaseOutput):\n\n    def verify_metric(self):\n        if not self.metric or self.plot:\n            return\n\n        path = os.fspath(self.path_info)\n        if not os.path.exists(path):\n            return\n\n        name = \"metrics\" if self.metric else \"plot\"\n        if os.path.isdir(path):\n            msg = \"directory '%s' cannot be used as %s.\"\n            logger.debug(msg, str(self.path_info), name)\n            return\n\n        if not istextfile(path):\n            msg = \"binary file '{}' cannot be used as {}.\"\n            raise DvcException(msg.format(self.path_info, name))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_WindowsPathInfo__URLPathParents.__repr__.return.f_self_src_parents_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_WindowsPathInfo__URLPathParents.__repr__.return.f_self_src_parents_", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 75, "end_line": 102, "span_ids": ["_URLPathInfo:2", "_URLPathInfo.__str__", "_URLPathParents.__getitem__", "_URLPathInfo", "_URLPathParents", "_URLPathParents.__repr__", "WindowsPathInfo", "PosixPathInfo", "_URLPathParents.__len__", "_URLPathParents.__init__"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WindowsPathInfo(PathInfo, pathlib.PureWindowsPath):\n    pass\n\n\nclass PosixPathInfo(PathInfo, pathlib.PurePosixPath):\n    pass\n\n\nclass _URLPathInfo(PosixPathInfo):\n    def __str__(self):\n        return self.__fspath__()\n\n    __unicode__ = __str__\n\n\nclass _URLPathParents:\n    def __init__(self, src):\n        self.src = src\n        self._parents = self.src._path.parents\n\n    def __len__(self):\n        return len(self._parents)\n\n    def __getitem__(self, idx):\n        return self.src.replace(path=self._parents[idx])\n\n    def __repr__(self):\n        return f\"<{self.src}.parents>\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_logging_locked.return.wrapper": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_logging_locked.return.wrapper", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["locked", "imports", "lock_repo"], "tokens": 325}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom contextlib import contextmanager\nfrom functools import wraps\nfrom typing import TYPE_CHECKING\n\nfrom funcy import cached_property, cat\nfrom git import InvalidGitRepositoryError\n\nfrom dvc.config import Config\nfrom dvc.exceptions import FileMissingError\nfrom dvc.exceptions import IsADirectoryError as DvcIsADirectoryError\nfrom dvc.exceptions import NotDvcRepoError, OutputNotFoundError\nfrom dvc.path_info import PathInfo\nfrom dvc.scm import Base\nfrom dvc.scm.base import SCMError\nfrom dvc.tree.repo import RepoTree\nfrom dvc.utils.fs import path_isin\n\nfrom .graph import build_graph, build_outs_graph, get_pipelines\nfrom .trie import build_outs_trie\n\nif TYPE_CHECKING:\n    from dvc.tree.base import BaseTree\n\n\nlogger = logging.getLogger(__name__)\n\n\n@contextmanager\ndef lock_repo(repo: \"Repo\"):\n    # pylint: disable=protected-access\n    depth = repo._lock_depth\n    repo._lock_depth += 1\n\n    try:\n        if depth > 0:\n            yield\n        else:\n            with repo.lock, repo.state:\n                repo._reset()\n                yield\n                # Graph cache is no longer valid after we release the repo.lock\n                repo._reset()\n    finally:\n        repo._lock_depth = depth\n\n\ndef locked(f):\n    @wraps(f)\n    def wrapper(repo, *args, **kwargs):\n        with lock_repo(repo):\n            return f(repo, *args, **kwargs)\n\n    return wrapper", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/commit.py_from_dvc_import_prompt__prepare_message.return.msg_format_map_kw_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/commit.py_from_dvc_import_prompt__prepare_message.return.msg_format_map_kw_", "embedding": null, "metadata": {"file_path": "dvc/repo/commit.py", "file_name": "commit.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 27, "span_ids": ["imports", "_prepare_message"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc import prompt\nfrom dvc.dvcfile import Dvcfile\nfrom dvc.stage.exceptions import StageCommitError\n\nfrom . import locked\n\n\ndef _prepare_message(stage, changes):\n    changed_deps, changed_outs, changed_stage = changes\n    if changed_deps and changed_outs:\n        msg = \"dependencies {deps} and outputs {outs} of {stage} changed.\"\n    elif changed_deps:\n        msg = \"dependencies {deps} of {stage} changed.\"\n    elif changed_outs:\n        msg = \"outputs {outs} of {stage} changed.\"\n    else:\n        msg = \"{stage_changed}\"\n\n    msg += \" Are you sure you want to commit it?\"\n\n    kw = {\n        \"stage\": stage,\n        \"deps\": changed_deps,\n        \"outs\": changed_outs,\n        \"stage_changed\": changed_stage,\n    }\n    return msg.format_map(kw)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/commit.py_prompt_to_commit_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/commit.py_prompt_to_commit_", "embedding": null, "metadata": {"file_path": "dvc/repo/commit.py", "file_name": "commit.py", "file_type": "text/x-python", "category": "implementation", "start_line": 30, "end_line": 54, "span_ids": ["commit", "prompt_to_commit"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def prompt_to_commit(stage, changes, force=False):\n    if not (force or prompt.confirm(_prepare_message(stage, changes))):\n        raise StageCommitError(\n            \"unable to commit changed {}. Use `-f|--force` to \"\n            \"force.\".format(stage)\n        )\n\n\n@locked\ndef commit(\n    self, target, with_deps=False, recursive=False, force=False,\n):\n    stages = self.stage.collect(\n        target, with_deps=with_deps, recursive=recursive\n    )\n    for stage in stages:\n        changes = stage.changed_entries()\n        if any(changes):\n            prompt_to_commit(stage, changes, force=force)\n            stage.save()\n        stage.commit()\n\n        Dvcfile(self, stage.path).dump(stage, update_pipeline=False)\n    return stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/fetch.py__fetch_external_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/fetch.py__fetch_external_", "embedding": null, "metadata": {"file_path": "dvc/repo/fetch.py", "file_name": "fetch.py", "file_type": "text/x-python", "category": "implementation", "start_line": 80, "end_line": 99, "span_ids": ["_fetch_external"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _fetch_external(self, repo_url, repo_rev, files, jobs):\n    from dvc.external_repo import external_repo\n\n    failed, downloaded = 0, 0\n    cache = self.cache.local\n    try:\n        with external_repo(\n            repo_url, repo_rev, cache_dir=cache.cache_dir\n        ) as repo:\n            d, f, _ = repo.fetch_external(files, jobs=jobs)\n            downloaded += d\n            failed += f\n    except CloneError:\n        failed += 1\n        logger.exception(\n            \"failed to fetch data for '{}'\".format(\", \".join(files))\n        )\n\n    return downloaded, failed", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/freeze.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/freeze.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/freeze.py", "file_name": "freeze.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["imports", "freeze", "_set", "unfreeze"], "tokens": 100}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import typing\n\nfrom . import locked\n\nif typing.TYPE_CHECKING:\n    from . import Repo\n\n\n@locked\ndef _set(repo: \"Repo\", target, frozen):\n    stage = repo.stage.get_target(target)\n    stage.frozen = frozen\n    stage.dvcfile.dump(stage, update_lock=False)\n\n    return stage\n\n\ndef freeze(repo, target):\n    return _set(repo, target, True)\n\n\ndef unfreeze(repo, target):\n    return _set(repo, target, False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/__init__.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/__init__.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/metrics/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 14, "span_ids": ["Metrics.show", "Metrics.diff", "Metrics", "Metrics.__init__"], "tokens": 81}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Metrics:\n    def __init__(self, repo):\n        self.repo = repo\n\n    def show(self, *args, **kwargs):\n        from dvc.repo.metrics.show import show\n\n        return show(self.repo, *args, **kwargs)\n\n    def diff(self, *args, **kwargs):\n        from .diff import diff\n\n        return diff(self.repo, *args, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_logging_PropsNotFoundError.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_logging_PropsNotFoundError.pass", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["imports", "PropsNotFoundError", "NotAPlotError.__init__", "NotAPlotError"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom funcy import cached_property, first, project\n\nfrom dvc.exceptions import (\n    DvcException,\n    MetricDoesNotExistError,\n    NoMetricsFoundError,\n    NoMetricsParsedError,\n)\nfrom dvc.repo.collect import collect\nfrom dvc.repo.plots.data import PlotParsingError\nfrom dvc.schema import PLOT_PROPS\nfrom dvc.tree.repo import RepoTree\nfrom dvc.utils import relpath\n\nlogger = logging.getLogger(__name__)\n\n\nclass NotAPlotError(DvcException):\n    def __init__(self, out):\n        super().__init__(\n            f\"'{out}' is not a known plot. Use `dvc plots modify` to turn it \"\n            \"into one.\"\n        )\n\n\nclass PropsNotFoundError(DvcException):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots_Plots.collect.return.data": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots_Plots.collect.return.data", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 24, "end_line": 62, "span_ids": ["Plots.__init__", "Plots.collect", "Plots"], "tokens": 300}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Plots:\n    def __init__(self, repo):\n        self.repo = repo\n\n    def collect(self, targets=None, revs=None):\n        \"\"\"Collects all props and data for plots.\n\n        Returns a structure like:\n            {rev: {plots.csv: {\n                props: {x: ..., \"header\": ..., ...},\n                data: \"...data as a string...\",\n            }}}\n        Data parsing is postponed, since it's affected by props.\n        \"\"\"\n        targets = [targets] if isinstance(targets, str) else targets or []\n        data = {}\n        for rev in self.repo.brancher(revs=revs):\n            # .brancher() adds unwanted workspace\n            if revs is not None and rev not in revs:\n                continue\n            rev = rev or \"workspace\"\n\n            tree = RepoTree(self.repo)\n            plots = _collect_plots(self.repo, targets, rev)\n            for path_info, props in plots.items():\n                datafile = relpath(path_info, self.repo.root_dir)\n                if rev not in data:\n                    data[rev] = {}\n                data[rev].update({datafile: {\"props\": props}})\n\n                # Load data from git or dvc cache\n                try:\n                    with tree.open(path_info) as fd:\n                        data[rev][datafile][\"data\"] = fd.read()\n                except FileNotFoundError:\n                    # This might happen simply because cache is absent\n                    pass\n\n        return data", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py__prepare_plots__prepare_plots.return.plots": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py__prepare_plots__prepare_plots.return.plots", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 175, "end_line": 216, "span_ids": ["_prepare_plots"], "tokens": 316}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _prepare_plots(data, revs, props):\n    \"\"\"Groups data by plot file.\n\n    Also resolves props conflicts between revs and applies global props.\n    \"\"\"\n    # we go in order revs are supplied on props conflict first ones win.\n    revs = iter(data) if revs is None else revs\n\n    plots, props_revs = {}, {}\n    for rev in revs:\n        # Asked for revision without data\n        if rev not in data:\n            continue\n\n        for datafile, desc in data[rev].items():\n            # We silently skip on an absent data file,\n            # see also try/except/pass in .collect()\n            if \"data\" not in desc:\n                continue\n\n            # props from command line overwrite plot props from out definition\n            full_props = {**desc[\"props\"], **props}\n\n            if datafile in plots:\n                saved = plots[datafile]\n                if saved[\"props\"] != full_props:\n                    logger.warning(\n                        f\"Inconsistent plot props for '{datafile}' in \"\n                        f\"'{props_revs[datafile]}' and '{rev}'. \"\n                        f\"Going to use ones from '{props_revs[datafile]}'\"\n                    )\n\n                saved[\"data\"][rev] = desc[\"data\"]\n            else:\n                plots[datafile] = {\n                    \"props\": full_props,\n                    \"data\": {rev: desc[\"data\"]},\n                }\n                # Save rev we got props from\n                props_revs[datafile] = rev\n\n    return plots", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py__render_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py__render_", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 219, "end_line": 255, "span_ids": ["_render"], "tokens": 322}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _render(datafile, datas, props, templates):\n    from .data import PlotData, plot_data\n\n    # Copy it to not modify a passed value\n    props = props.copy()\n\n    # Add x and y to fields if set\n    fields = props.get(\"fields\")\n    if fields is not None:\n        fields = {*fields, props.get(\"x\"), props.get(\"y\")} - {None}\n\n    template = templates.load(props.get(\"template\") or \"default\")\n\n    # If x is not set add index field\n    if not props.get(\"x\") and template.has_anchor(\"x\"):\n        props[\"append_index\"] = True\n        props[\"x\"] = PlotData.INDEX_FIELD\n\n    # Parse all data, preprocess it and collect as a list of dicts\n    data = []\n    for rev, datablob in datas.items():\n        rev_data = plot_data(datafile, rev, datablob).to_datapoints(\n            fields=fields,\n            path=props.get(\"path\"),\n            header=props.get(\"header\", True),\n            append_index=props.get(\"append_index\", False),\n        )\n        data.extend(rev_data)\n\n    # If y is not set then use last field not used yet\n    if not props.get(\"y\") and template.has_anchor(\"y\"):\n        fields = list(first(data))\n        skip = (PlotData.REVISION_FIELD, props.get(\"x\"))\n        props[\"y\"] = first(f for f in reversed(fields) if f not in skip)\n\n    return template.render(data, props=props)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py_csv_plot_data.raise_PlotMetricTypeError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py_csv_plot_data.raise_PlotMetricTypeError", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 47, "span_ids": ["PlotParsingError.__init__", "PlotMetricTypeError", "plot_data", "PlotMetricTypeError.__init__", "imports", "PlotDataStructureError", "PlotParsingError", "PlotDataStructureError.__init__"], "tokens": 302}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import csv\nimport io\nimport os\nfrom collections import OrderedDict\nfrom copy import copy\n\nfrom funcy import first, reraise\n\nfrom dvc.exceptions import DvcException\nfrom dvc.utils.serialize import ParseError, parse_json, parse_yaml\n\n\nclass PlotMetricTypeError(DvcException):\n    def __init__(self, file):\n        super().__init__(\n            \"'{}' - file type error\\n\"\n            \"Only JSON, YAML, CSV and TSV formats are supported.\".format(file)\n        )\n\n\nclass PlotDataStructureError(DvcException):\n    def __init__(self):\n        super().__init__(\n            \"Plot data extraction failed. Please see \"\n            \"https://man.dvc.org/plot for supported data formats.\"\n        )\n\n\nclass PlotParsingError(ParseError):\n    def __init__(self, path, revision):\n        self.path = path\n        self.revision = revision\n\n        super().__init__(path, f\"revision: {revision}\")\n\n\ndef plot_data(filename, revision, content):\n    _, extension = os.path.splitext(filename.lower())\n    if extension == \".json\":\n        return JSONPlotData(filename, revision, content)\n    elif extension == \".csv\":\n        return CSVPlotData(filename, revision, content)\n    elif extension == \".tsv\":\n        return CSVPlotData(filename, revision, content, delimiter=\"\\t\")\n    elif extension == \".yaml\":\n        return YAMLPlotData(filename, revision, content)\n    raise PlotMetricTypeError(filename)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__filter_fields__filter_fields.return.new_data": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__filter_fields__filter_fields.return.new_data", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 49, "end_line": 70, "span_ids": ["_filter_fields"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _filter_fields(data_points, filename, revision, fields=None, **kwargs):\n    if not fields:\n        return data_points\n    assert isinstance(fields, set)\n\n    new_data = []\n    for data_point in data_points:\n        new_dp = copy(data_point)\n\n        keys = set(data_point.keys())\n        if keys & fields != fields:\n            raise DvcException(\n                \"Could not find fields: '{}' for '{}' at '{}'.\".format(\n                    \", \".join(fields), filename, revision\n                )\n            )\n\n        to_del = keys - fields\n        for key in to_del:\n            del new_dp[key]\n        new_data.append(new_dp)\n    return new_data", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__apply_path__apply_path.return.data_points": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__apply_path__apply_path.return.data_points", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 73, "end_line": 98, "span_ids": ["_apply_path"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _apply_path(data, path=None, **kwargs):\n    if not path or not isinstance(data, dict):\n        return data\n\n    import jsonpath_ng\n\n    found = jsonpath_ng.parse(path).find(data)\n    first_datum = first(found)\n    if (\n        len(found) == 1\n        and isinstance(first_datum.value, list)\n        and isinstance(first(first_datum.value), dict)\n    ):\n        data_points = first_datum.value\n    elif len(first_datum.path.fields) == 1:\n        field_name = first(first_datum.path.fields)\n        data_points = [{field_name: datum.value} for datum in found]\n    else:\n        raise PlotDataStructureError()\n\n    if not isinstance(data_points, list) or not (\n        isinstance(first(data_points), dict)\n    ):\n        raise PlotDataStructureError()\n\n    return data_points", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__lists__find_data.raise_PlotDataStructureEr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__lists__find_data.raise_PlotDataStructureEr", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 100, "end_line": 122, "span_ids": ["_lists", "_find_data"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _lists(dictionary):\n    for _, value in dictionary.items():\n        if isinstance(value, dict):\n            yield from _lists(value)\n        elif isinstance(value, list):\n            yield value\n\n\ndef _find_data(data, fields=None, **kwargs):\n    if not isinstance(data, dict):\n        return data\n\n    if not fields:\n        # just look for first list of dicts\n        fields = set()\n\n    for lst in _lists(data):\n        if (\n            all(isinstance(dp, dict) for dp in lst)\n            and set(first(lst).keys()) & fields == fields\n        ):\n            return lst\n    raise PlotDataStructureError()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__append_index__append_revision.return.data_points": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py__append_index__append_revision.return.data_points", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 124, "end_line": 142, "span_ids": ["_append_index", "_append_revision"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _append_index(data_points, append_index=False, **kwargs):\n    if not append_index:\n        return data_points\n\n    if PlotData.INDEX_FIELD in first(data_points).keys():\n        raise DvcException(\n            \"Cannot append index. Field of same name ('{}') found in data. \"\n            \"Use `-x` to specify x axis field.\".format(PlotData.INDEX_FIELD)\n        )\n\n    for index, data_point in enumerate(data_points):\n        data_point[PlotData.INDEX_FIELD] = index\n    return data_points\n\n\ndef _append_revision(data_points, revision, **kwargs):\n    for data_point in data_points:\n        data_point[PlotData.REVISION_FIELD] = revision\n    return data_points", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py_PlotData_JSONPlotData._processors.return.__apply_path__find_data_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py_PlotData_JSONPlotData._processors.return.__apply_path__find_data_", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 153, "end_line": 190, "span_ids": ["PlotData.raw", "PlotData._processors", "JSONPlotData", "PlotData.__init__", "JSONPlotData.raw", "PlotData.to_datapoints", "PlotData", "JSONPlotData._processors"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PlotData:\n    REVISION_FIELD = \"rev\"\n    INDEX_FIELD = \"index\"\n\n    def __init__(self, filename, revision, content, **kwargs):\n        self.filename = filename\n        self.revision = revision\n        self.content = content\n\n    def raw(self, **kwargs):\n        raise NotImplementedError\n\n    def _processors(self):\n        return [_filter_fields, _append_index, _append_revision]\n\n    def to_datapoints(self, **kwargs):\n        with reraise(\n            [ParseError, csv.Error],\n            PlotParsingError(self.filename, self.revision),\n        ):\n            data = self.raw(**kwargs)\n\n        for data_proc in self._processors():\n            data = data_proc(\n                data, filename=self.filename, revision=self.revision, **kwargs\n            )\n        return data\n\n\nclass JSONPlotData(PlotData):\n    def raw(self, **kwargs):\n        return parse_json(\n            self.content, self.filename, object_pairs_hook=OrderedDict\n        )\n\n    def _processors(self):\n        parent_processors = super()._processors()\n        return [_apply_path, _find_data] + parent_processors", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py_CSVPlotData_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/data.py_CSVPlotData_", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/data.py", "file_name": "data.py", "file_type": "text/x-python", "category": "implementation", "start_line": 193, "end_line": 228, "span_ids": ["YAMLPlotData", "CSVPlotData.raw", "YAMLPlotData.raw", "YAMLPlotData._processors", "CSVPlotData", "CSVPlotData.__init__"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CSVPlotData(PlotData):\n    def __init__(self, filename, revision, content, delimiter=\",\"):\n        super().__init__(filename, revision, content)\n        self.delimiter = delimiter\n\n    def raw(self, header=True, **kwargs):  # pylint: disable=arguments-differ\n        first_row = first(csv.reader(io.StringIO(self.content)))\n\n        if header:\n            reader = csv.DictReader(\n                io.StringIO(self.content), delimiter=self.delimiter,\n            )\n        else:\n            reader = csv.DictReader(\n                io.StringIO(self.content),\n                delimiter=self.delimiter,\n                fieldnames=[str(i) for i in range(len(first_row))],\n            )\n\n        fieldnames = reader.fieldnames\n        data = list(reader)\n\n        return [\n            OrderedDict([(field, data_point[field]) for field in fieldnames])\n            for data_point in data\n        ]\n\n\nclass YAMLPlotData(PlotData):\n    def raw(self, **kwargs):\n        return parse_yaml(self.content, self.filename, typ=\"rt\")\n\n    def _processors(self):\n        parent_processors = super()._processors()\n        return [_find_data] + parent_processors", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_json_NoFieldInDataError.__init__.super___init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_json_NoFieldInDataError.__init__.super___init___", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["TemplateNotFoundError.__init__", "TemplateNotFoundError", "imports", "BadTemplateError", "NoFieldInDataError.__init__", "NoFieldInDataError"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport os\nfrom typing import Any, Dict, Optional\n\nfrom funcy import cached_property\n\nfrom dvc.exceptions import DvcException\nfrom dvc.utils.fs import makedirs\n\n\nclass TemplateNotFoundError(DvcException):\n    def __init__(self, path):\n        super().__init__(f\"Template '{path}' not found.\")\n\n\nclass BadTemplateError(DvcException):\n    pass\n\n\nclass NoFieldInDataError(DvcException):\n    def __init__(self, field_name):\n        super().__init__(\n            f\"Field '{field_name}' does not exist in provided data.\"\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_Template.anchor_Template._check_field_exists.if_not_any_field_in_row_f.raise_NoFieldInDataError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_Template.anchor_Template._check_field_exists.if_not_any_field_in_row_f.raise_NoFieldInDataError_", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 56, "end_line": 91, "span_ids": ["Template.has_anchor", "Template._fill_metadata", "Template._fill_anchor", "Template._check_field_exists", "Template._anchor_str", "Template.anchor"], "tokens": 268}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Template:\n\n    @classmethod\n    def anchor(cls, name):\n        return cls.ANCHOR.format(name.upper())\n\n    def has_anchor(self, name):\n        return self._anchor_str(name) in self.content\n\n    @classmethod\n    def _fill_anchor(cls, content, name, value):\n        value_str = json.dumps(\n            value, indent=cls.INDENT, separators=cls.SEPARATORS, sort_keys=True\n        )\n        return content.replace(cls._anchor_str(name), value_str)\n\n    @classmethod\n    def _anchor_str(cls, name):\n        return '\"{}\"'.format(cls.anchor(name))\n\n    @classmethod\n    def _fill_metadata(cls, content, props):\n        props.setdefault(\"title\", \"\")\n        props.setdefault(\"x_label\", props.get(\"x\"))\n        props.setdefault(\"y_label\", props.get(\"y\"))\n\n        names = [\"title\", \"x\", \"y\", \"x_label\", \"y_label\"]\n        for name in names:\n            value = props.get(name)\n            if value is not None:\n                content = cls._fill_anchor(content, name, value)\n\n        return content\n\n    @staticmethod\n    def _check_field_exists(data, field):\n        if not any(field in row for row in data):\n            raise NoFieldInDataError(field)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_SmoothLinearTemplate_SmoothLinearTemplate.DEFAULT_CONTENT._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_SmoothLinearTemplate_SmoothLinearTemplate.DEFAULT_CONTENT._", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 169, "end_line": 199, "span_ids": ["SmoothLinearTemplate"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SmoothLinearTemplate(Template):\n    DEFAULT_NAME = \"smooth\"\n\n    DEFAULT_CONTENT = {\n        \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.json\",\n        \"data\": {\"values\": Template.anchor(\"data\")},\n        \"title\": Template.anchor(\"title\"),\n        \"mark\": {\"type\": \"line\"},\n        \"encoding\": {\n            \"x\": {\n                \"field\": Template.anchor(\"x\"),\n                \"type\": \"quantitative\",\n                \"title\": Template.anchor(\"x_label\"),\n            },\n            \"y\": {\n                \"field\": Template.anchor(\"y\"),\n                \"type\": \"quantitative\",\n                \"title\": Template.anchor(\"y_label\"),\n                \"scale\": {\"zero\": False},\n            },\n            \"color\": {\"field\": \"rev\", \"type\": \"nominal\"},\n        },\n        \"transform\": [\n            {\n                \"loess\": Template.anchor(\"y\"),\n                \"on\": Template.anchor(\"x\"),\n                \"groupby\": [\"rev\"],\n                \"bandwidth\": 0.3,\n            }\n        ],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_PlotTemplates.__init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_PlotTemplates.__init___", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 255, "end_line": 281, "span_ids": ["PlotTemplates.init", "PlotTemplates._dump", "PlotTemplates.load", "PlotTemplates.__init__"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PlotTemplates:\n\n    def __init__(self, dvc_dir):\n        self.dvc_dir = dvc_dir\n\n    def init(self):\n        makedirs(self.templates_dir, exist_ok=True)\n        for t in self.TEMPLATES:\n            self._dump(t())\n\n    def _dump(self, template):\n        path = os.path.join(self.templates_dir, template.filename)\n        with open(path, \"w\") as fd:\n            fd.write(template.content)\n\n    def load(self, name):\n        try:\n            path = self.get_template(name)\n\n            with open(path) as fd:\n                content = fd.read()\n\n            return Template(content, name=name)\n        except TemplateNotFoundError:\n            for template in self.TEMPLATES:\n                if template.DEFAULT_NAME == name:\n                    return template()\n            raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py_os_parse_params.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py_os_parse_params.return.ret", "embedding": null, "metadata": {"file_path": "dvc/repo/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 35, "span_ids": ["imports", "parse_params", "is_valid_name"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom contextlib import suppress\n\nfrom funcy import concat, first, lfilter\n\nfrom dvc.exceptions import InvalidArgumentError\nfrom dvc.stage import PipelineStage\nfrom dvc.stage.exceptions import (\n    DuplicateStageName,\n    InvalidStageName,\n    StageFileAlreadyExistsError,\n)\n\nfrom ..exceptions import OutputDuplicationError\nfrom . import locked\nfrom .scm_context import scm_context\n\n\ndef is_valid_name(name: str):\n    from ..stage import INVALID_STAGENAME_CHARS\n\n    return not INVALID_STAGENAME_CHARS & set(name)\n\n\ndef parse_params(path_params):\n    ret = []\n    for path_param in path_params:\n        path, _, params_str = path_param.rpartition(\":\")\n        # remove empty strings from params, on condition such as `-p \"file1:\"`\n        params = lfilter(bool, params_str.split(\",\"))\n        if not path:\n            ret.extend(params)\n        else:\n            ret.append({path: params})\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py__get_file_path__get_file_path.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py__get_file_path__get_file_path.return._", "embedding": null, "metadata": {"file_path": "dvc/repo/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 38, "end_line": 59, "span_ids": ["_get_file_path"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_file_path(kwargs):\n    from dvc.dvcfile import DVC_FILE, DVC_FILE_SUFFIX\n\n    out = first(\n        concat(\n            kwargs.get(\"outs\", []),\n            kwargs.get(\"outs_no_cache\", []),\n            kwargs.get(\"metrics\", []),\n            kwargs.get(\"metrics_no_cache\", []),\n            kwargs.get(\"plots\", []),\n            kwargs.get(\"plots_no_cache\", []),\n            kwargs.get(\"outs_persist\", []),\n            kwargs.get(\"outs_persist_no_cache\", []),\n            kwargs.get(\"checkpoints\", []),\n        )\n    )\n\n    return (\n        os.path.basename(os.path.normpath(out)) + DVC_FILE_SUFFIX\n        if out\n        else DVC_FILE\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py__check_stage_exists__check_stage_exists.if_stage___class___Pip.elif_stage_name_and_stage.raise_DuplicateStageName_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/run.py__check_stage_exists__check_stage_exists.if_stage___class___Pip.elif_stage_name_and_stage.raise_DuplicateStageName_", "embedding": null, "metadata": {"file_path": "dvc/repo/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 61, "end_line": 73, "span_ids": ["_check_stage_exists"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _check_stage_exists(dvcfile, stage):\n    if not dvcfile.exists():\n        return\n\n    hint = \"Use '--force' to overwrite.\"\n    if stage.__class__ != PipelineStage:\n        raise StageFileAlreadyExistsError(\n            f\"'{stage.relpath}' already exists. {hint}\"\n        )\n    elif stage.name and stage.name in dvcfile.stages:\n        raise DuplicateStageName(\n            f\"Stage '{stage.name}' already exists in '{stage.relpath}'. {hint}\"\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/imports.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/imports.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/stage/imports.py", "file_name": "imports.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["imports", "sync_import", "update_import"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nlogger = logging.getLogger(__name__)\n\n\ndef update_import(stage, rev=None):\n    stage.deps[0].update(rev=rev)\n    frozen = stage.frozen\n    stage.frozen = False\n    try:\n        stage.reproduce()\n    finally:\n        stage.frozen = frozen\n\n\ndef sync_import(stage, dry=False, force=False, jobs=None):\n    \"\"\"Synchronize import's outs to the workspace.\"\"\"\n    logger.info(\n        \"Importing '{dep}' -> '{out}'\".format(\n            dep=stage.deps[0], out=stage.outs[0]\n        )\n    )\n    if dry:\n        return\n\n    if not force and stage.already_cached():\n        stage.outs[0].checkout()\n    else:\n        stage.save_deps()\n        stage.deps[0].download(stage.outs[0], jobs=jobs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/params.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/params.py__", "embedding": null, "metadata": {"file_path": "dvc/stage/params.py", "file_name": "params.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 15, "span_ids": ["StageParams"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageParams:\n    PARAM_MD5 = \"md5\"\n    PARAM_CMD = \"cmd\"\n    PARAM_WDIR = \"wdir\"\n    PARAM_DEPS = \"deps\"\n    PARAM_OUTS = \"outs\"\n    PARAM_LOCKED = \"locked\"  # backward compatibility\n    PARAM_FROZEN = \"frozen\"\n    PARAM_META = \"meta\"\n    PARAM_ALWAYS_CHANGED = \"always_changed\"\n    PARAM_PARAMS = \"params\"\n    PARAM_METRICS = \"metrics\"\n    PARAM_PLOTS = \"plots\"\n    PARAM_DESC = \"desc\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py__serialize_params_keys__serialize_params_keys.return.keys": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py__serialize_params_keys__serialize_params_keys.return.keys", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 66, "end_line": 89, "span_ids": ["_serialize_params_keys"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _serialize_params_keys(params):\n    \"\"\"\n    Returns the following format of data:\n     ['lr', 'train', {'params2.yaml': ['lr']}]\n\n    The output is sorted, with keys of params from default params file being\n    at the first, and then followed by entry of other files in lexicographic\n    order. The keys of those custom files are also sorted in the same order.\n    \"\"\"\n    keys = []\n    for param_dep in sort_by_path(params):\n        dump = param_dep.dumpd()\n        path, params = dump[PARAM_PATH], dump[PARAM_PARAMS]\n        assert isinstance(params, (dict, list))\n        # when on no_exec, params are not filled and are saved as list\n        k = sorted(params.keys() if isinstance(params, dict) else params)\n        if not k:\n            continue\n\n        if path == DEFAULT_PARAMS_FILE:\n            keys = k + keys\n        else:\n            keys.append({path: k})\n    return keys", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py__serialize_params_values__serialize_params_values.return.key_vals": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py__serialize_params_values__serialize_params_values.return.key_vals", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 99, "end_line": 116, "span_ids": ["_serialize_params_values"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@no_type_check\ndef _serialize_params_values(params: List[ParamsDependency]):\n    \"\"\"Returns output of following format, used for lockfile:\n        {'params.yaml': {'lr': '1', 'train': 2}, {'params2.yaml': {'lr': '1'}}\n\n    Default params file are always kept at the start, followed by others in\n    alphabetical order. The param values are sorted too(not recursively though)\n    \"\"\"\n    key_vals = OrderedDict()\n    for param_dep in sort_by_path(params):\n        dump = param_dep.dumpd()\n        path, params = dump[PARAM_PATH], dump[PARAM_PARAMS]\n        if isinstance(params, dict):\n            kv = [(key, params[key]) for key in sorted(params.keys())]\n            key_vals[path] = OrderedDict(kv)\n            if path == DEFAULT_PARAMS_FILE:\n                key_vals.move_to_end(path, last=False)\n    return key_vals", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_to_pipeline_file_to_pipeline_file.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_to_pipeline_file_to_pipeline_file.return._", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 119, "end_line": 141, "span_ids": ["to_pipeline_file"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def to_pipeline_file(stage: \"PipelineStage\"):\n    wdir = resolve_wdir(stage.wdir, stage.path)\n    params, deps = split_params_deps(stage)\n    deps = sorted(d.def_path for d in deps)\n    params = _serialize_params_keys(params)\n\n    outs, metrics, plots = _serialize_outs(stage.outs)\n    res = [\n        (stage.PARAM_DESC, stage.desc),\n        (stage.PARAM_CMD, stage.cmd),\n        (stage.PARAM_WDIR, wdir),\n        (stage.PARAM_DEPS, deps),\n        (stage.PARAM_PARAMS, params),\n        (stage.PARAM_OUTS, outs),\n        (stage.PARAM_METRICS, metrics),\n        (stage.PARAM_PLOTS, plots),\n        (stage.PARAM_FROZEN, stage.frozen),\n        (stage.PARAM_ALWAYS_CHANGED, stage.always_changed),\n        (stage.PARAM_META, stage.meta),\n    ]\n    return {\n        stage.name: OrderedDict([(key, value) for key, value in res if value])\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_os_MissingDataSource": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_os_MissingDataSource", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 21, "span_ids": ["imports"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport pathlib\nfrom itertools import product\n\nfrom funcy import lsplit, rpartial\n\nfrom dvc import dependency, output\nfrom dvc.utils.fs import path_isin\n\nfrom ..dependency import ParamsDependency\nfrom ..hash_info import HashInfo\nfrom ..tree.local import LocalTree\nfrom ..tree.s3 import S3Tree\nfrom ..utils import dict_md5, format_link, relpath\nfrom .exceptions import (\n    MissingDataSource,\n    StageExternalOutputsError,\n    StagePathNotDirectoryError,\n    StagePathNotFoundError,\n    StagePathOutsideError,\n)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_check_stage_path_check_stage_path.if_real_path_proj_dir_.raise_StagePathOutsideErr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_check_stage_path_check_stage_path.if_real_path_proj_dir_.raise_StagePathOutsideErr", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 23, "end_line": 40, "span_ids": ["check_stage_path"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def check_stage_path(repo, path, is_wdir=False):\n    assert repo is not None\n\n    error_msg = \"{wdir_or_path} '{path}' {{}}\".format(\n        wdir_or_path=\"stage working dir\" if is_wdir else \"file path\",\n        path=path,\n    )\n\n    real_path = os.path.realpath(path)\n    if not os.path.exists(real_path):\n        raise StagePathNotFoundError(error_msg.format(\"does not exist\"))\n\n    if not os.path.isdir(real_path):\n        raise StagePathNotDirectoryError(error_msg.format(\"is not directory\"))\n\n    proj_dir = os.path.realpath(repo.root_dir)\n    if real_path != proj_dir and not path_isin(real_path, proj_dir):\n        raise StagePathOutsideError(error_msg.format(\"is outside of DVC repo\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_fill_stage_outputs_fill_stage_dependencies.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_fill_stage_outputs_fill_stage_dependencies.None_2", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 44, "end_line": 76, "span_ids": ["fill_stage_outputs", "fill_stage_dependencies"], "tokens": 208}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def fill_stage_outputs(stage, **kwargs):\n    assert not stage.outs\n\n    keys = [\n        \"outs_persist\",\n        \"outs_persist_no_cache\",\n        \"metrics_no_cache\",\n        \"metrics\",\n        \"plots_no_cache\",\n        \"plots\",\n        \"outs_no_cache\",\n        \"outs\",\n        \"checkpoints\",\n    ]\n\n    stage.outs = []\n    for key in keys:\n        stage.outs += output.loads_from(\n            stage,\n            kwargs.get(key, []),\n            use_cache=\"no_cache\" not in key,\n            persist=\"persist\" in key,\n            metric=\"metrics\" in key,\n            plot=\"plots\" in key,\n            checkpoint=\"checkpoints\" in key,\n        )\n\n\ndef fill_stage_dependencies(stage, deps=None, erepo=None, params=None):\n    assert not stage.deps\n    stage.deps = []\n    stage.deps += dependency.loads_from(stage, deps or [], erepo=erepo)\n    stage.deps += dependency.loads_params(stage, params or [])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_check_no_externals_check_no_externals.raise_StageExternalOutput": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_check_no_externals_check_no_externals.raise_StageExternalOutput", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 76, "end_line": 98, "span_ids": ["check_no_externals"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def check_no_externals(stage):\n    from urllib.parse import urlparse\n\n    # NOTE: preventing users from accidentally using external outputs. See\n    # https://github.com/iterative/dvc/issues/1545 for more details.\n\n    def _is_external(out):\n        # NOTE: in case of `remote://` notation, the user clearly knows that\n        # this is an advanced feature and so we shouldn't error-out.\n        if out.is_in_repo or urlparse(out.def_path).scheme == \"remote\":\n            return False\n        return True\n\n    outs = [str(out) for out in stage.outs if _is_external(out)]\n    if not outs:\n        return\n\n    str_outs = \", \".join(outs)\n    link = format_link(\"https://dvc.org/doc/user-guide/managing-external-data\")\n    raise StageExternalOutputsError(\n        f\"Output(s) outside of DVC project: {str_outs}. \"\n        f\"See {link} for more info.\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_check_circular_dependency_check_missing_outputs.if_paths_.raise_MissingDataSource_p": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_check_circular_dependency_check_missing_outputs.if_paths_.raise_MissingDataSource_p", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 101, "end_line": 127, "span_ids": ["check_duplicated_arguments", "check_missing_outputs", "check_circular_dependency"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def check_circular_dependency(stage):\n    from dvc.exceptions import CircularDependencyError\n\n    circular_dependencies = {d.path_info for d in stage.deps} & {\n        o.path_info for o in stage.outs\n    }\n\n    if circular_dependencies:\n        raise CircularDependencyError(str(circular_dependencies.pop()))\n\n\ndef check_duplicated_arguments(stage):\n    from collections import Counter\n\n    from dvc.exceptions import ArgumentDuplicationError\n\n    path_counts = Counter(edge.path_info for edge in stage.deps + stage.outs)\n\n    for path, occurrence in path_counts.items():\n        if occurrence > 1:\n            raise ArgumentDuplicationError(str(path))\n\n\ndef check_missing_outputs(stage):\n    paths = [str(out) for out in stage.outs if not out.exists]\n    if paths:\n        raise MissingDataSource(paths)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_stage_dump_eq_stage_dump_eq.return.old_d_new_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_stage_dump_eq_stage_dump_eq.return.old_d_new_d", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 133, "end_line": 153, "span_ids": ["stage_dump_eq"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def stage_dump_eq(stage_cls, old_d, new_d):\n    # NOTE: need to remove checksums from old dict in order to compare\n    # it to the new one, since the new one doesn't have checksums yet.\n    old_d.pop(stage_cls.PARAM_MD5, None)\n    new_d.pop(stage_cls.PARAM_MD5, None)\n    outs = old_d.get(stage_cls.PARAM_OUTS, [])\n    for out in outs:\n        out.pop(LocalTree.PARAM_CHECKSUM, None)\n        out.pop(S3Tree.PARAM_CHECKSUM, None)\n        out.pop(HashInfo.PARAM_SIZE, None)\n        out.pop(HashInfo.PARAM_NFILES, None)\n\n    # outs and deps are lists of dicts. To check equality, we need to make\n    # them independent of the order, so, we convert them to dicts.\n    combination = product(\n        [old_d, new_d], [stage_cls.PARAM_DEPS, stage_cls.PARAM_OUTS]\n    )\n    for coll, key in combination:\n        if coll.get(key):\n            coll[key] = {item[\"path\"]: item for item in coll[key]}\n    return old_d == new_d", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_compute_md5_compute_md5.return.dict_md5_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_compute_md5_compute_md5.return.dict_md5_", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 156, "end_line": 186, "span_ids": ["compute_md5"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def compute_md5(stage):\n    from dvc.output.base import BaseOutput\n\n    d = stage.dumpd()\n\n    # Remove md5 and meta, these should not affect stage md5\n    d.pop(stage.PARAM_MD5, None)\n    d.pop(stage.PARAM_META, None)\n    d.pop(stage.PARAM_DESC, None)\n\n    # Ignore the wdir default value. In this case DVC-file w/o\n    # wdir has the same md5 as a file with the default value specified.\n    # It's important for backward compatibility with pipelines that\n    # didn't have WDIR in their DVC-files.\n    if d.get(stage.PARAM_WDIR) == \".\":\n        del d[stage.PARAM_WDIR]\n\n    return dict_md5(\n        d,\n        exclude=[\n            stage.PARAM_LOCKED,  # backward compatibility\n            stage.PARAM_FROZEN,\n            BaseOutput.PARAM_DESC,\n            BaseOutput.PARAM_METRIC,\n            BaseOutput.PARAM_PERSIST,\n            BaseOutput.PARAM_CHECKPOINT,\n            BaseOutput.PARAM_ISEXEC,\n            HashInfo.PARAM_SIZE,\n            HashInfo.PARAM_NFILES,\n        ],\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_resolve_wdir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/utils.py_resolve_wdir_", "embedding": null, "metadata": {"file_path": "dvc/stage/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 186, "end_line": 218, "span_ids": ["resolve_wdir", "get_dump", "split_params_deps", "resolve_paths"], "tokens": 260}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def resolve_wdir(wdir, path):\n    rel_wdir = relpath(wdir, os.path.dirname(path))\n    return pathlib.PurePath(rel_wdir).as_posix() if rel_wdir != \".\" else None\n\n\ndef resolve_paths(path, wdir=None):\n    path = os.path.abspath(path)\n    wdir = wdir or os.curdir\n    wdir = os.path.abspath(os.path.join(os.path.dirname(path), wdir))\n    return path, wdir\n\n\ndef get_dump(stage):\n    return {\n        key: value\n        for key, value in {\n            stage.PARAM_DESC: stage.desc,\n            stage.PARAM_MD5: stage.md5,\n            stage.PARAM_CMD: stage.cmd,\n            stage.PARAM_WDIR: resolve_wdir(stage.wdir, stage.path),\n            stage.PARAM_FROZEN: stage.frozen,\n            stage.PARAM_DEPS: [d.dumpd() for d in stage.deps],\n            stage.PARAM_OUTS: [o.dumpd() for o in stage.outs],\n            stage.PARAM_ALWAYS_CHANGED: stage.always_changed,\n            stage.PARAM_META: stage.meta,\n        }.items()\n        if value\n    }\n\n\ndef split_params_deps(stage):\n    return lsplit(rpartial(isinstance, ParamsDependency), stage.deps)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System._reflink_windows_System.reflink.if_ret_0_.raise_DvcException_refli": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/system.py_System._reflink_windows_System.reflink.if_ret_0_.raise_DvcException_refli", "embedding": null, "metadata": {"file_path": "dvc/system.py", "file_name": "system.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 117, "span_ids": ["System.reflink", "System._reflink_linux", "System._reflink_windows"], "tokens": 261}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class System:\n\n    @staticmethod\n    def _reflink_windows(_src, _dst):\n        return -1\n\n    @staticmethod\n    def _reflink_linux(src, dst):\n        import fcntl\n\n        FICLONE = 0x40049409\n\n        try:\n            ret = 255\n            with open(src) as s, open(dst, \"w+\") as d:\n                ret = fcntl.ioctl(d.fileno(), FICLONE, s.fileno())\n        finally:\n            if ret != 0:\n                os.unlink(dst)\n\n        return ret\n\n    @staticmethod\n    def reflink(source, link_name):\n        source, link_name = os.fspath(source), os.fspath(link_name)\n\n        system = platform.system()\n        try:\n            if system == \"Windows\":\n                ret = System._reflink_windows(source, link_name)\n            elif system == \"Darwin\":\n                ret = System._reflink_darwin(source, link_name)\n            elif system == \"Linux\":\n                ret = System._reflink_linux(source, link_name)\n            else:\n                ret = -1\n        except OSError:\n            ret = -1\n\n        if ret != 0:\n            raise DvcException(\"reflink is not supported\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py__Helpers_for_other_modu__fobj_md5.while_True_.if_progress_func_.progress_func_len_data_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py__Helpers_for_other_modu__fobj_md5.while_True_.if_progress_func_.progress_func_len_data_", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 43, "span_ids": ["_fobj_md5", "dos2unix", "docstring"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Helpers for other modules.\"\"\"\n\nimport hashlib\nimport json\nimport logging\nimport math\nimport os\nimport re\nimport stat\nimport sys\nimport time\nfrom typing import Optional, Tuple\n\nimport colorama\nimport nanotime\nfrom shortuuid import uuid\n\nlogger = logging.getLogger(__name__)\n\nLOCAL_CHUNK_SIZE = 2 ** 20  # 1 MB\nLARGE_FILE_SIZE = 2 ** 30  # 1 GB\nLARGE_DIR_SIZE = 100\nTARGET_REGEX = re.compile(r\"(?P<path>.*?)(:(?P<name>[^\\\\/:]*))??$\")\n\n\ndef dos2unix(data):\n    return data.replace(b\"\\r\\n\", b\"\\n\")\n\n\ndef _fobj_md5(fobj, hash_md5, binary, progress_func=None):\n    while True:\n        data = fobj.read(LOCAL_CHUNK_SIZE)\n        if not data:\n            break\n\n        if binary:\n            chunk = data\n        else:\n            chunk = dos2unix(data)\n\n        hash_md5.update(chunk)\n        if progress_func:\n            progress_func(len(data))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/http.py_iter_url_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/http.py_iter_url_", "embedding": null, "metadata": {"file_path": "dvc/utils/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 26, "end_line": 66, "span_ids": ["iter_url"], "tokens": 235}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@contextmanager\ndef iter_url(url, chunk_size=io.DEFAULT_BUFFER_SIZE):\n    \"\"\"Iterate over chunks requested from url.\"\"\"\n    import requests\n\n    def request(headers=None):\n        the_url = url() if callable(url) else url\n        response = requests.get(the_url, stream=True, headers=headers)\n        if response.status_code == 404:\n            raise FileNotFoundError(f\"Can't open {the_url}\")\n        response.raise_for_status()\n        return response\n\n    def gen(response):\n        try:\n            pos = 0\n            while True:\n                try:\n                    for chunk in response.iter_content(chunk_size):\n                        pos += len(chunk)\n                        yield chunk\n                    break\n                except requests.ConnectionError:\n                    response.close()\n                    if response.headers.get(\"Accept-Ranges\") != \"bytes\":\n                        raise\n\n                    # Reopen request from where we stopped\n                    headers = {\"Range\": f\"bytes={pos}-\"}\n                    response = request(headers)\n        finally:\n            response.close()\n\n    response = request()\n    it = gen(response)\n    try:\n        yield response, it\n    finally:\n        # Ensure connection is closed\n        it.close()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/stream.py_io_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/stream.py_io_", "embedding": null, "metadata": {"file_path": "dvc/utils/stream.py", "file_name": "stream.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 57, "span_ids": ["IterStream.read1", "imports", "IterStream:3", "IterStream.peek", "IterStream.__init__", "IterStream.writable", "IterStream", "IterStream.readable", "IterStream.readinto"], "tokens": 366}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\n\n\nclass IterStream(io.RawIOBase):\n    \"\"\"Wraps an iterator yielding bytes as a file object\"\"\"\n\n    def __init__(self, iterator):  # pylint: disable=super-init-not-called\n        self.iterator = iterator\n        self.leftover = b\"\"\n\n    def readable(self):\n        return True\n\n    def writable(self) -> bool:\n        return False\n\n    # Python 3 requires only .readinto() method, it still uses other ones\n    # under some circumstances and falls back if those are absent. Since\n    # iterator already constructs byte strings for us, .readinto() is not the\n    # most optimal, so we provide .read1() too.\n\n    def readinto(self, b):\n        try:\n            n = len(b)  # We're supposed to return at most this much\n            chunk = self.leftover or next(self.iterator)\n            output, self.leftover = chunk[:n], chunk[n:]\n\n            n_out = len(output)\n            b[:n_out] = output\n            return n_out\n        except StopIteration:\n            return 0  # indicate EOF\n\n    readinto1 = readinto\n\n    def read1(self, n=-1):\n        try:\n            chunk = self.leftover or next(self.iterator)\n        except StopIteration:\n            return b\"\"\n\n        # Return an arbitrary number or bytes\n        if n <= 0:\n            self.leftover = b\"\"\n            return chunk\n\n        output, self.leftover = chunk[:n], chunk[n:]\n        return output\n\n    def peek(self, n):\n        while len(self.leftover) < n:\n            try:\n                self.leftover += next(self.iterator)\n            except StopIteration:\n                break\n        return self.leftover[:n]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-pydrive2.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-pydrive2.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-pydrive2.py", "file_name": "hook-pydrive2.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports"], "tokens": 40}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from PyInstaller.utils.hooks import (  # pylint:disable=import-error\n    copy_metadata,\n)\n\ndatas = copy_metadata(\"pydrive2\")\ndatas += copy_metadata(\"google-api-python-client\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_logging_TestDirFixture.setUp.self_create_self_UNICODE_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/basic_env.py_logging_TestDirFixture.setUp.self_create_self_UNICODE_", "embedding": null, "metadata": {"file_path": "tests/basic_env.py", "file_name": "basic_env.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 93, "span_ids": ["TestDirFixture.mkdtemp", "TestDirFixture.__init__", "TestDirFixture._pushd", "TestDirFixture.setUp", "TestDirFixture.create", "imports", "TestDirFixture", "TestDirFixture._popd", "TestDirFixture.root_dir"], "tokens": 727}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport tempfile\nimport warnings\nfrom unittest import TestCase\n\nimport pytest\nimport shortuuid\nfrom git import Repo\nfrom git.exc import GitCommandNotFound\n\nfrom dvc.repo import Repo as DvcRepo\nfrom dvc.utils.fs import remove\n\nlogger = logging.getLogger(\"dvc\")\n\n\nclass TestDirFixture:\n    DATA_DIR = \"data_dir\"\n    DATA_SUB_DIR = os.path.join(DATA_DIR, \"data_sub_dir\")\n    DATA = os.path.join(DATA_DIR, \"data\")\n    DATA_SUB = os.path.join(DATA_SUB_DIR, \"data_sub\")\n    DATA_CONTENTS = DATA\n    DATA_SUB_CONTENTS = DATA_SUB\n    FOO = \"foo\"\n    FOO_CONTENTS = FOO\n    BAR = \"bar\"\n    # NOTE: len(FOO_CONTENTS) must be != len(BAR_CONTENTS)\n    #\n    # Our state database relies on file mtime and file size to determine\n    # that a file has changed. Usually, mtime is enough by itself but on\n    # some filesystems like APFS on macOS mtime resolution is so bad,\n    # that our tests can overwrite a file in that time window without dvc\n    # being able to detect that, thus causing tests to fail. Usually,\n    # in tests, we replace foo with bar, so we need to make sure that when we\n    # modify a file in our tests, its content length changes.\n    BAR_CONTENTS = BAR + \"r\"\n    CODE = \"code.py\"\n    CODE_CONTENTS = (\n        \"import sys\\nimport shutil\\n\"\n        \"shutil.copyfile(sys.argv[1], sys.argv[2])\"\n    )\n    UNICODE = \"\u0442\u0435\u0441\u0442\"\n    UNICODE_CONTENTS = \"\u043f\u0440\u043e\u0432\u0435\u0440\u043a\u0430\"\n\n    def __init__(self):\n        root_dir = self.mkdtemp()\n        self._root_dir = os.path.realpath(root_dir)\n        self._saved_dir = None\n\n    @property\n    def root_dir(self):\n        return self._root_dir\n\n    def _pushd(self, d):\n        if not self._saved_dir:\n            self._saved_dir = os.path.realpath(os.curdir)\n        os.chdir(d)\n\n    def _popd(self):\n        os.chdir(self._saved_dir)\n        self._saved_dir = None\n\n    def create(self, name, contents):\n        dname = os.path.dirname(name)\n        if len(dname) > 0 and not os.path.isdir(dname):\n            os.makedirs(dname)\n\n        with open(name, \"a\", encoding=\"utf-8\") as f:\n            f.write(\n                contents\n                if isinstance(contents, str)\n                else contents.decode(\"utf-8\")\n            )\n\n    @staticmethod\n    def mkdtemp(base_directory=None):\n        prefix = f\"dvc-test.{os.getpid()}.\"\n        suffix = f\".{shortuuid.uuid()}\"\n        return tempfile.mkdtemp(\n            prefix=prefix, suffix=suffix, dir=base_directory\n        )\n\n    def setUp(self):\n        self._pushd(self._root_dir)\n        self.create(self.FOO, self.FOO_CONTENTS)\n        self.create(self.BAR, self.BAR_CONTENTS)\n        self.create(self.CODE, self.CODE_CONTENTS)\n        os.mkdir(self.DATA_DIR)\n        os.mkdir(self.DATA_SUB_DIR)\n        self.create(self.DATA, self.DATA_CONTENTS)\n        self.create(self.DATA_SUB, self.DATA_SUB_CONTENTS)\n        self.create(self.UNICODE, self.UNICODE_CONTENTS)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/conftest.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/conftest.py_os_", "embedding": null, "metadata": {"file_path": "tests/func/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["imports", "run_copy_metrics"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\n\n@pytest.fixture\ndef run_copy_metrics(tmp_dir, run_copy):\n    def run(file1, file2, commit=None, tag=None, single_stage=True, **kwargs):\n        stage = tmp_dir.dvc.run(\n            cmd=f\"python copy.py {file1} {file2}\",\n            deps=[file1],\n            single_stage=single_stage,\n            **kwargs,\n        )\n\n        if hasattr(tmp_dir.dvc, \"scm\"):\n            files = [stage.path]\n            files += [\n                os.fspath(out.path_info)\n                for out in stage.outs\n                if not out.use_cache\n            ]\n            tmp_dir.dvc.scm.add(files)\n            if commit:\n                tmp_dir.dvc.scm.commit(commit)\n            if tag:\n                tmp_dir.dvc.scm.tag(tag)\n        return stage\n\n    return run", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_dirty_test_diff_dirty.assert_dvc_params_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_dirty_test_diff_dirty.assert_dvc_params_diff_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 38, "span_ids": ["test_diff_dirty"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_dirty(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"bar\")\n\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: baz\", commit=\"baz\")\n    tmp_dir.gen(\"params.yaml\", \"foo: qux\")\n\n    assert dvc.params.diff() == {\n        \"params.yaml\": {\"foo\": {\"old\": \"baz\", \"new\": \"qux\"}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_os_remote.return.dvc_cloud_get_remote_ups": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_os_remote.return.dvc_cloud_get_remote_ups", "embedding": null, "metadata": {"file_path": "tests/func/remote/test_index.py", "file_name": "test_index.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 29, "span_ids": ["imports", "remote"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.exceptions import DownloadError, UploadError\nfrom dvc.remote.base import Remote\nfrom dvc.remote.index import RemoteIndex\nfrom dvc.remote.local import LocalRemote\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils.fs import remove\n\n\n@pytest.fixture(scope=\"function\")\ndef remote(tmp_dir, dvc, tmp_path_factory, mocker):\n    url = os.fspath(tmp_path_factory.mktemp(\"upstream\"))\n    dvc.config[\"remote\"][\"upstream\"] = {\"url\": url}\n    dvc.config[\"core\"][\"remote\"] = \"upstream\"\n\n    # patch hashes_exist since the LocalRemote normally overrides\n    # BaseTree.hashes_exist.\n    def hashes_exist(self, *args, **kwargs):\n        return Remote.hashes_exist(self, *args, **kwargs)\n\n    mocker.patch.object(LocalRemote, \"hashes_exist\", hashes_exist)\n\n    # patch index class since LocalRemote normally overrides index class\n    mocker.patch.object(LocalRemote, \"INDEX_CLS\", RemoteIndex)\n\n    return dvc.cloud.get_remote(\"upstream\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_test_add.assert_load_yaml_foo_dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_test_add.assert_load_yaml_foo_dvc", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 34, "end_line": 56, "span_ids": ["test_add"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add(tmp_dir, dvc):\n    (stage,) = tmp_dir.dvc_gen({\"foo\": \"foo\"})\n    md5, _ = file_md5(\"foo\")\n\n    assert stage is not None\n\n    assert isinstance(stage, Stage)\n    assert os.path.isfile(stage.path)\n    assert len(stage.outs) == 1\n    assert len(stage.deps) == 0\n    assert stage.cmd is None\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", md5)\n    assert stage.md5 is None\n\n    assert load_yaml(\"foo.dvc\") == {\n        \"outs\": [\n            {\n                \"md5\": \"acbd18db4cc2f85cedef654fccc4a4d8\",\n                \"path\": \"foo\",\n                \"size\": 3,\n            }\n        ],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddDirectoryWithForwardSlash_test_add_tracked_file.with_pytest_raises_Output.dvc_add_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddDirectoryWithForwardSlash_test_add_tracked_file.with_pytest_raises_Output.dvc_add_path_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 118, "end_line": 140, "span_ids": ["test_add_tracked_file", "TestAddDirectoryWithForwardSlash.test", "TestAddDirectoryWithForwardSlash"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddDirectoryWithForwardSlash(TestDvc):\n    def test(self):\n        dname = \"directory/\"\n        os.mkdir(dname)\n        self.create(os.path.join(dname, \"file\"), \"file\")\n        stages = self.dvc.add(dname)\n        self.assertEqual(len(stages), 1)\n        stage = stages[0]\n        self.assertTrue(stage is not None)\n        self.assertEqual(os.path.abspath(\"directory.dvc\"), stage.path)\n\n\ndef test_add_tracked_file(tmp_dir, scm, dvc):\n    path = \"tracked_file\"\n    tmp_dir.scm_gen(path, \"...\", commit=\"add tracked file\")\n    msg = f\"\"\" output '{path}' is already tracked by SCM \\\\(e.g. Git\\\\).\n    You can remove it from Git, then add to DVC.\n        To stop tracking from Git:\n            git rm -r --cached '{path}'\n            git commit -m \"stop tracking {path}\" \"\"\"\n\n    with pytest.raises(OutputAlreadyTrackedError, match=msg):\n        dvc.add(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddCommit_test_should_collect_dir_cache_only_once.assert_get_dir_hash_count": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestAddCommit_test_should_collect_dir_cache_only_once.assert_get_dir_hash_count", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 398, "end_line": 422, "span_ids": ["test_should_collect_dir_cache_only_once", "TestAddCommit", "TestAddCommit.test"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestAddCommit(TestDvc):\n    def test(self):\n        ret = main([\"add\", self.FOO, \"--no-commit\"])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.isfile(self.FOO))\n        self.assertFalse(os.path.exists(self.dvc.cache.local.cache_dir))\n\n        ret = main([\"commit\", self.FOO + \".dvc\"])\n        self.assertEqual(ret, 0)\n        self.assertTrue(os.path.isfile(self.FOO))\n        self.assertEqual(len(os.listdir(self.dvc.cache.local.cache_dir)), 1)\n\n\ndef test_should_collect_dir_cache_only_once(mocker, tmp_dir, dvc):\n    tmp_dir.gen({\"data/data\": \"foo\"})\n    get_dir_hash_counter = mocker.spy(LocalTree, \"get_dir_hash\")\n    ret = main([\"add\", \"data\"])\n    assert ret == 0\n\n    ret = main([\"status\"])\n    assert ret == 0\n\n    ret = main([\"status\"])\n    assert ret == 0\n    assert get_dir_hash_counter.mock.call_count == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_analytics.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_analytics.py_os_", "embedding": null, "metadata": {"file_path": "tests/func/test_analytics.py", "file_name": "test_analytics.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 46, "span_ids": ["test_main_analytics", "test_scm_subrepo", "imports", "test_scm_dvc_only", "test_daemon_analytics", "test_scm_git"], "tokens": 275}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport mock\n\nfrom dvc.analytics import _scm_in_use\nfrom dvc.main import main\nfrom dvc.repo import Repo\n\n\n@mock.patch(\"dvc.analytics.send\")\ndef test_daemon_analytics(mock_send, tmp_path):\n    report = os.fspath(tmp_path)\n    assert 0 == main([\"daemon\", \"analytics\", report])\n\n    mock_send.assert_called_with(report)\n\n\n@mock.patch(\"dvc.analytics.collect_and_send_report\")\n@mock.patch(\"dvc.analytics.is_enabled\", return_value=True)\ndef test_main_analytics(mock_is_enabled, mock_report, tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"text\")\n    assert 0 == main([\"add\", \"foo\"])\n    assert mock_is_enabled.called\n    assert mock_report.called\n\n\ndef test_scm_dvc_only(tmp_dir, dvc):\n    scm = _scm_in_use()\n    assert scm == \"NoSCM\"\n\n\ndef test_scm_git(tmp_dir, scm, dvc):\n    scm = _scm_in_use()\n    assert scm == \"Git\"\n\n\ndef test_scm_subrepo(tmp_dir, scm):\n    subdir = tmp_dir / \"subdir\"\n    subdir.mkdir()\n\n    with subdir.chdir():\n        Repo.init(subdir=True)\n        scm = _scm_in_use()\n\n    assert scm == \"Git\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_os_TestCache.test_get.self_assertEqual_os_fspat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_os_TestCache.test_get.self_assertEqual_os_fspat", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 43, "span_ids": ["TestCache.test_get", "imports", "TestCache.setUp", "TestCache", "TestCache.test_all"], "tokens": 314}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport stat\nimport textwrap\n\nimport configobj\nimport pytest\n\nfrom dvc.cache import Cache\nfrom dvc.cache.base import DirCacheError\nfrom dvc.dir_info import DirInfo\nfrom dvc.hash_info import HashInfo\nfrom dvc.main import main\nfrom dvc.utils import relpath\nfrom tests.basic_env import TestDir, TestDvc\n\n\nclass TestCache(TestDvc):\n    def setUp(self):\n        super().setUp()\n        self.cache1_md5 = \"123\"\n        self.cache2_md5 = \"234\"\n        self.cache1 = os.path.join(\n            self.dvc.cache.local.cache_dir,\n            self.cache1_md5[0:2],\n            self.cache1_md5[2:],\n        )\n        self.cache2 = os.path.join(\n            self.dvc.cache.local.cache_dir,\n            self.cache2_md5[0:2],\n            self.cache2_md5[2:],\n        )\n        self.create(self.cache1, \"1\")\n        self.create(self.cache2, \"2\")\n\n    def test_all(self):\n        md5_list = list(Cache(self.dvc).local.all())\n        self.assertEqual(len(md5_list), 2)\n        self.assertIn(self.cache1_md5, md5_list)\n        self.assertIn(self.cache2_md5, md5_list)\n\n    def test_get(self):\n        cache = Cache(self.dvc).local.tree.hash_to_path_info(self.cache1_md5)\n        self.assertEqual(os.fspath(cache), self.cache1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutSuggestGit_TestCheckoutSuggestGit.test.None_2.except_DvcException_as_ex.self_assertIsNone_exc___c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_TestCheckoutSuggestGit_TestCheckoutSuggestGit.test.None_2.except_DvcException_as_ex.self_assertIsNone_exc___c", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 403, "end_line": 428, "span_ids": ["TestCheckoutSuggestGit", "TestCheckoutSuggestGit.test"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckoutSuggestGit(TestRepro):\n    def test(self):\n        # pylint: disable=no-member\n\n        try:\n            self.dvc.checkout(targets=\"gitbranch\")\n        except DvcException as exc:\n            self.assertIsInstance(exc, CheckoutErrorSuggestGit)\n            self.assertIsInstance(exc.__cause__, NoOutputOrStageError)\n            self.assertIsInstance(\n                exc.__cause__.__cause__, StageFileDoesNotExistError\n            )\n\n        try:\n            self.dvc.checkout(targets=self.FOO)\n        except DvcException as exc:\n            self.assertIsInstance(exc, CheckoutErrorSuggestGit)\n            self.assertIsInstance(exc.__cause__, NoOutputOrStageError)\n            self.assertIsNone(exc.__cause__.__cause__)\n\n        try:\n            self.dvc.checkout(targets=\"looks-like-dvcfile.dvc\")\n        except DvcException as exc:\n            self.assertIsInstance(exc, CheckoutErrorSuggestGit)\n            self.assertIsInstance(exc.__cause__, StageFileDoesNotExistError)\n            self.assertIsNone(exc.__cause__.__cause__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkouts_with_different_addressing_test_checkouts_with_different_addressing.assert_dvc_checkout_bar_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkouts_with_different_addressing_test_checkouts_with_different_addressing.assert_dvc_checkout_bar_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 781, "end_line": 811, "span_ids": ["test_checkouts_with_different_addressing"], "tokens": 343}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkouts_with_different_addressing(tmp_dir, dvc, run_copy):\n    tmp_dir.gen({\"foo\": \"foo\", \"lorem\": \"lorem\"})\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    run_copy(\"lorem\", \"ipsum\", name=\"copy-lorem-ipsum\")\n\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / \"ipsum\").unlink()\n    assert set(dvc.checkout(PIPELINE_FILE)[\"added\"]) == {\"bar\", \"ipsum\"}\n\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / \"ipsum\").unlink()\n    assert set(dvc.checkout(\":\")[\"added\"]) == {\"bar\", \"ipsum\"}\n\n    (tmp_dir / \"bar\").unlink()\n    assert dvc.checkout(\"copy-foo-bar\")[\"added\"] == [\"bar\"]\n\n    (tmp_dir / \"bar\").unlink()\n    assert dvc.checkout(\"dvc.yaml:copy-foo-bar\")[\"added\"] == [\"bar\"]\n\n    (tmp_dir / \"bar\").unlink()\n    assert dvc.checkout(\":copy-foo-bar\")[\"added\"] == [\"bar\"]\n\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / \"data\").mkdir()\n    with (tmp_dir / \"data\").chdir():\n        assert dvc.checkout(relpath(tmp_dir / \"dvc.yaml\") + \":copy-foo-bar\")[\n            \"added\"\n        ] == [relpath(tmp_dir / \"bar\")]\n\n    (tmp_dir / \"bar\").unlink()\n    assert dvc.checkout(\"bar\")[\"added\"] == [\"bar\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkouts_on_same_stage_name_and_output_name_test_checkouts_on_same_stage_name_and_output_name.assert_dvc_checkout_co": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkouts_on_same_stage_name_and_output_name_test_checkouts_on_same_stage_name_and_output_name.assert_dvc_checkout_co", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 814, "end_line": 822, "span_ids": ["test_checkouts_on_same_stage_name_and_output_name"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkouts_on_same_stage_name_and_output_name(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    run_copy(\"foo\", \"copy-foo-bar\", name=\"make_collision\")\n\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / \"copy-foo-bar\").unlink()\n    assert dvc.checkout(\"copy-foo-bar\")[\"added\"] == [\"bar\"]\n    assert dvc.checkout(\"./copy-foo-bar\")[\"added\"] == [\"copy-foo-bar\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_pipeline_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_pipeline_stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_commit.py", "file_name": "test_commit.py", "file_type": "text/x-python", "category": "test", "start_line": 104, "end_line": 124, "span_ids": ["test_imported_entries_unchanged", "test_commit_pipeline_stage"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_commit_pipeline_stage(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", no_commit=True, name=\"copy-foo-bar\")\n    assert dvc.status(stage.addressing)\n    assert dvc.commit(stage.addressing, force=True) == [stage]\n    assert not dvc.status(stage.addressing)\n\n    # just to confirm different variants work\n    assert dvc.commit(f\":{stage.addressing}\") == [stage]\n    assert dvc.commit(f\"{PIPELINE_FILE}:{stage.addressing}\") == [stage]\n    assert dvc.commit(PIPELINE_FILE) == [stage]\n\n\ndef test_imported_entries_unchanged(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"file content\", \"initial commit\")\n\n    stage = dvc.imp(fspath(erepo_dir), \"file\")\n\n    assert stage.changed_entries() == ([], [], None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_cloud_cli_test_cloud_cli.None_25": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_cloud_cli_test_cloud_cli.None_25", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 129, "end_line": 190, "span_ids": ["test_cloud_cli"], "tokens": 449}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", all_clouds, indirect=True)\ndef test_cloud_cli(tmp_dir, dvc, remote):\n    args = [\"-v\", \"-j\", \"2\"]\n\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    cache = stage.outs[0].cache_path\n\n    (stage_dir,) = tmp_dir.dvc_gen(\n        {\n            \"data_dir\": {\n                \"data_sub_dir\": {\"data_sub\": \"data_sub\"},\n                \"data\": \"data\",\n                \"empty\": \"\",\n            }\n        }\n    )\n    assert stage_dir is not None\n    cache_dir = stage_dir.outs[0].cache_path\n\n    # FIXME check status output\n\n    assert main([\"push\"] + args) == 0\n    assert os.path.exists(cache)\n    assert os.path.isfile(cache)\n    assert os.path.isfile(cache_dir)\n\n    remove(dvc.cache.local.cache_dir)\n\n    assert main([\"fetch\"] + args) == 0\n    assert os.path.exists(cache)\n    assert os.path.isfile(cache)\n    assert os.path.isfile(cache_dir)\n\n    assert main([\"pull\"] + args) == 0\n    assert os.path.exists(cache)\n    assert os.path.isfile(cache)\n    assert os.path.isfile(cache_dir)\n    assert os.path.isfile(\"foo\")\n    assert os.path.isdir(\"data_dir\")\n\n    with open(cache) as fd:\n        assert fd.read() == \"foo\"\n    assert os.path.isfile(cache_dir)\n\n    # NOTE: http doesn't support gc yet\n    if remote.url.startswith(\"http\"):\n        return\n\n    # NOTE: check if remote gc works correctly on directories\n    assert main([\"gc\", \"-cw\", \"-f\"] + args) == 0\n    shutil.move(\n        dvc.cache.local.cache_dir, dvc.cache.local.cache_dir + \".back\",\n    )\n\n    assert main([\"fetch\"] + args) == 0\n\n    assert main([\"pull\", \"-f\"] + args) == 0\n    assert os.path.exists(cache)\n    assert os.path.isfile(cache)\n    assert os.path.isfile(cache_dir)\n    assert os.path.isfile(\"foo\")\n    assert os.path.isdir(\"data_dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_hash_recalculation_test_hash_recalculation.assert_test_get_file_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_hash_recalculation_test_hash_recalculation.assert_test_get_file_hash", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 222, "end_line": 233, "span_ids": ["test_hash_recalculation"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_hash_recalculation(mocker, dvc, tmp_dir, local_remote):\n    tmp_dir.gen({\"foo\": \"foo\"})\n    test_get_file_hash = mocker.spy(LocalTree, \"get_file_hash\")\n    ret = main([\"config\", \"cache.type\", \"hardlink\"])\n    assert ret == 0\n    ret = main([\"add\", \"foo\"])\n    assert ret == 0\n    ret = main([\"push\"])\n    assert ret == 0\n    ret = main([\"run\", \"--single-stage\", \"-d\", \"foo\", \"echo foo\"])\n    assert ret == 0\n    assert test_get_file_hash.mock.call_count == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_verify_hashes_test_verify_hashes.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_verify_hashes_test_verify_hashes.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 261, "end_line": 284, "span_ids": ["test_verify_hashes"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_verify_hashes(\n    tmp_dir, scm, dvc, mocker, tmp_path_factory, local_remote\n):\n    tmp_dir.dvc_gen({\"file\": \"file1 content\"}, commit=\"add file\")\n    tmp_dir.dvc_gen({\"dir\": {\"subfile\": \"file2 content\"}}, commit=\"add dir\")\n    dvc.push()\n\n    # remove artifacts and cache to trigger fetching\n    remove(\"file\")\n    remove(\"dir\")\n    remove(dvc.cache.local.cache_dir)\n\n    hash_spy = mocker.spy(dvc.cache.local.tree, \"get_file_hash\")\n\n    dvc.pull()\n    assert hash_spy.call_count == 0\n\n    # Removing cache will invalidate existing state entries\n    remove(dvc.cache.local.cache_dir)\n\n    dvc.config[\"remote\"][\"upstream\"][\"verify\"] = True\n\n    dvc.pull()\n    assert hash_spy.call_count == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pull_stats_test_pull_stats.assert_Everything_is_up_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_pull_stats_test_pull_stats.assert_Everything_is_up_", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 467, "end_line": 482, "span_ids": ["test_pull_stats"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_stats(tmp_dir, dvc, caplog, local_remote):\n    tmp_dir.dvc_gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    dvc.push()\n    clean([\"foo\", \"bar\"], dvc)\n    (tmp_dir / \"bar\").write_text(\"foobar\")\n    caplog.clear()\n    with caplog.at_level(level=logging.INFO, logger=\"dvc\"):\n        main([\"pull\", \"--force\"])\n    assert \"M\\tbar\" in caplog.text\n    assert \"A\\tfoo\" in caplog.text\n    assert \"2 files fetched\" in caplog.text\n    assert \"1 file added\" in caplog.text\n    assert \"1 file modified\" in caplog.text\n    with caplog.at_level(level=logging.INFO, logger=\"dvc\"):\n        main([\"pull\"])\n    assert \"Everything is up to date.\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_push_pull_all_test_push_pull_all.assert_dvc_pull_key_T": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_push_pull_all_test_push_pull_all.assert_dvc_pull_key_T", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 485, "end_line": 501, "span_ids": ["test_push_pull_all"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"key,expected\", [(\"all_tags\", 2), (\"all_branches\", 3), (\"all_commits\", 3)]\n)\ndef test_push_pull_all(tmp_dir, scm, dvc, local_remote, key, expected):\n    tmp_dir.dvc_gen({\"foo\": \"foo\"}, commit=\"first\")\n    scm.tag(\"v1\")\n    dvc.remove(\"foo.dvc\")\n    tmp_dir.dvc_gen({\"bar\": \"bar\"}, commit=\"second\")\n    scm.tag(\"v2\")\n    with tmp_dir.branch(\"branch\", new=True):\n        dvc.remove(\"bar.dvc\")\n        tmp_dir.dvc_gen({\"baz\": \"baz\"}, commit=\"branch\")\n\n    assert dvc.push(**{key: True}) == expected\n\n    clean([\"foo\", \"bar\", \"baz\"], dvc)\n    assert dvc.pull(**{key: True})[\"fetched\"] == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_push_pull_fetch_pipeline_stages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_push_pull_fetch_pipeline_stages_", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 504, "end_line": 522, "span_ids": ["test_push_pull_fetch_pipeline_stages"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_pull_fetch_pipeline_stages(tmp_dir, dvc, run_copy, local_remote):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", no_commit=True, name=\"copy-foo-bar\")\n\n    dvc.push(\"copy-foo-bar\")\n    assert len(recurse_list_dir(local_remote.url)) == 1\n    # pushing everything so as we can check pull/fetch only downloads\n    # from specified targets\n    dvc.push()\n    clean([\"foo\", \"bar\"], dvc)\n\n    dvc.pull(\"copy-foo-bar\")\n    assert (tmp_dir / \"bar\").exists()\n    assert len(recurse_list_dir(dvc.cache.local.cache_dir)) == 1\n    clean([\"bar\"], dvc)\n\n    dvc.fetch(\"copy-foo-bar\")\n    assert len(recurse_list_dir(dvc.cache.local.cache_dir)) == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_run_load_one_for_multistage_non_existing_test_run_load_one_for_multistage_non_existing_stage_name.with_pytest_raises_StageN.assert_Dvcfile_dvc_stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_run_load_one_for_multistage_non_existing_test_run_load_one_for_multistage_non_existing_stage_name.with_pytest_raises_StageN.assert_Dvcfile_dvc_stage", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 50, "span_ids": ["test_run_load_one_for_multistage_non_existing", "test_run_load_one_for_multistage_non_existing_stage_name"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_load_one_for_multistage_non_existing(tmp_dir, dvc):\n    with pytest.raises(StageFileDoesNotExistError):\n        assert Dvcfile(dvc, PIPELINE_FILE).stages.get(\"copy-foo-foo2\")\n\n\ndef test_run_load_one_for_multistage_non_existing_stage_name(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        metrics=[\"foo2\"],\n        always_changed=True,\n    )\n    with pytest.raises(StageNotFound):\n        assert Dvcfile(dvc, stage.path).stages[\"random-name\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_run_load_one_on_single_stage_test_run_load_one_on_single_stage.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_run_load_one_on_single_stage_test_run_load_one_on_single_stage.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 53, "end_line": 64, "span_ids": ["test_run_load_one_on_single_stage"], "tokens": 113}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_load_one_on_single_stage(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        metrics=[\"foo2\"],\n        always_changed=True,\n        single_stage=True,\n    )\n    assert isinstance(Dvcfile(dvc, stage.path), SingleStageFile)\n    assert Dvcfile(dvc, stage.path).stages.get(\"random-name\") == stage\n    assert Dvcfile(dvc, stage.path).stage == stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_test_remove_stage.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_test_remove_stage.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 163, "end_line": 185, "span_ids": ["test_remove_stage"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_stage(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    stage2 = run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n\n    dvc_file = Dvcfile(dvc, PIPELINE_FILE)\n    assert dvc_file.exists()\n    assert {\"copy-bar-foobar\", \"copy-foo-bar\"} == set(\n        dvc_file._load()[0][\"stages\"].keys()\n    )\n\n    dvc_file.remove_stage(stage)\n\n    assert [\"copy-bar-foobar\"] == list(dvc_file._load()[0][\"stages\"].keys())\n\n    # sanity check\n    stage2.reload()\n\n    # re-check to see if it fails if there's no stage entry\n    dvc_file.remove_stage(stage)\n    dvc_file.remove(force=True)\n    # should not fail when there's no file at all.\n    dvc_file.remove_stage(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_lockfile_test_remove_stage_lockfile.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_lockfile_test_remove_stage_lockfile.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 188, "end_line": 209, "span_ids": ["test_remove_stage_lockfile"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_stage_lockfile(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    stage2 = run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n\n    dvc_file = Dvcfile(dvc, PIPELINE_FILE)\n    lock_file = dvc_file._lockfile\n    assert dvc_file.exists()\n    assert lock_file.exists()\n    assert {\"copy-bar-foobar\", \"copy-foo-bar\"} == set(lock_file.load().keys())\n    lock_file.remove_stage(stage)\n\n    assert [\"copy-bar-foobar\"] == list(lock_file.load().keys())\n\n    # sanity check\n    stage2.reload()\n\n    # re-check to see if it fails if there's no stage entry\n    lock_file.remove_stage(stage)\n    lock_file.remove()\n    # should not fail when there's no file at all.\n    lock_file.remove_stage(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_dvcfiles_test_remove_stage_dvcfiles.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_dvcfiles_test_remove_stage_dvcfiles.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 212, "end_line": 226, "span_ids": ["test_remove_stage_dvcfiles"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_stage_dvcfiles(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", single_stage=True)\n\n    dvc_file = Dvcfile(dvc, stage.path)\n    assert dvc_file.exists()\n    dvc_file.remove_stage(stage)\n    assert not dvc_file.exists()\n\n    # re-check to see if it fails if there's no stage entry\n    dvc_file.remove_stage(stage)\n    dvc_file.remove(force=True)\n\n    # should not fail when there's no file at all.\n    dvc_file.remove_stage(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_on_lockfile_format_error_test_remove_stage_on_lockfile_format_error.None_1.dvc_file_remove_stage_sta": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_on_lockfile_format_error_test_remove_stage_on_lockfile_format_error.None_1.dvc_file_remove_stage_sta", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 230, "end_line": 249, "span_ids": ["test_remove_stage_on_lockfile_format_error"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_stage_on_lockfile_format_error(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    dvc_file = Dvcfile(dvc, stage.path)\n    lock_file = dvc_file._lockfile\n\n    data = dvc_file._load()[0]\n    lock_data = lock_file.load()\n    lock_data[\"gibberish\"] = True\n    data[\"gibberish\"] = True\n    dump_yaml(lock_file.relpath, lock_data)\n    with pytest.raises(StageFileFormatError):\n        dvc_file.remove_stage(stage)\n\n    lock_file.remove()\n    dvc_file.dump(stage, update_pipeline=False)\n\n    dump_yaml(dvc_file.relpath, data)\n    with pytest.raises(StageFileFormatError):\n        dvc_file.remove_stage(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_preserves_comment_test_remove_stage_preserves_comment.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_preserves_comment_test_remove_stage_preserves_comment.assert_", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 251, "end_line": 284, "span_ids": ["test_remove_stage_preserves_comment"], "tokens": 224}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_stage_preserves_comment(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\n        \"dvc.yaml\",\n        textwrap.dedent(\n            \"\"\"\\\n            stages:\n                generate-foo:\n                    cmd: \"echo foo > foo\"\n                    # This copies 'foo' text to 'foo' file.\n                    outs:\n                    - foo\n                copy-foo-bar:\n                    cmd: \"python copy.py foo bar\"\n                    deps:\n                    - foo\n                    outs:\n                    - bar\"\"\"\n        ),\n    )\n\n    dvc.reproduce(PIPELINE_FILE)\n\n    dvc_file = Dvcfile(dvc, PIPELINE_FILE)\n\n    assert dvc_file.exists()\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    assert (tmp_dir / \"foo\").exists()\n    assert (tmp_dir / \"bar\").exists()\n\n    dvc_file.remove_stage(dvc_file.stages[\"copy-foo-bar\"])\n    assert (\n        \"# This copies 'foo' text to 'foo' file.\"\n        in (tmp_dir / PIPELINE_FILE).read_text()\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_dump_preserves_meta_test_dvcfile_dump_preserves_meta.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_dump_preserves_meta_test_dvcfile_dump_preserves_meta.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 311, "end_line": 323, "span_ids": ["test_dvcfile_dump_preserves_meta"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dvcfile_dump_preserves_meta(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"run_copy\")\n    dvcfile = stage.dvcfile\n\n    data = dvcfile._load()[0]\n    metadata = {\"name\": \"copy-file\"}\n    stage.meta = metadata\n    data[\"stages\"][\"run_copy\"][\"meta\"] = metadata\n\n    dvcfile.dump(stage)\n    assert dvcfile._load()[0] == data\n    assert dvcfile._load()[0][\"stages\"][\"run_copy\"][\"meta\"] == metadata", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_known_sha_test_pull_subdir_file.assert_dest_read_text_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_known_sha_test_pull_subdir_file.assert_dest_read_text_", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 67, "end_line": 99, "span_ids": ["test_known_sha", "test_pull_subdir_file"], "tokens": 258}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_known_sha(erepo_dir):\n    erepo_dir.scm.commit(\"init\")\n\n    url = f\"file://{erepo_dir}\"\n    with external_repo(url) as repo:\n        rev = repo.scm.get_rev()\n        prev_rev = repo.scm.resolve_rev(\"HEAD^\")\n\n    # Hits cache\n    with external_repo(url, rev) as repo:\n        pass\n\n    # No clone, no pull, copies a repo, checks out the known sha\n    with external_repo(url, prev_rev) as repo:\n        pass\n\n\ndef test_pull_subdir_file(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        subdir = erepo_dir / \"subdir\"\n        subdir.mkdir()\n        (subdir / \"file\").write_text(\"contents\")\n        erepo_dir.dvc_add(subdir / \"file\", commit=\"create file\")\n\n    dest = tmp_dir / \"file\"\n    with external_repo(os.fspath(erepo_dir)) as repo:\n        _, _, save_infos = repo.fetch_external(\n            [os.path.join(\"subdir\", \"file\")]\n        )\n        repo.cache.local.checkout(PathInfo(dest), save_infos[0])\n\n    assert dest.is_file()\n    assert dest.read_text() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_no_dir_cache__count_files.return.sum_len_files_for_____": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_no_dir_cache__count_files.return.sum_len_files_for_____", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 196, "end_line": 211, "span_ids": ["_count_files", "test_gc_no_dir_cache"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_no_dir_cache(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    (dir_stage,) = tmp_dir.dvc_gen({\"dir\": {\"x\": \"x\", \"subdir\": {\"y\": \"y\"}}})\n\n    remove(dir_stage.outs[0].cache_path)\n\n    with pytest.raises(CollectCacheError):\n        dvc.gc(workspace=True)\n\n    assert _count_files(dvc.cache.local.cache_dir) == 4\n    dvc.gc(force=True, workspace=True)\n    assert _count_files(dvc.cache.local.cache_dir) == 2\n\n\ndef _count_files(path):\n    return sum(len(files) for _, _, files in os.walk(path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_no_unpacked_dir_test_gc_no_unpacked_dir.assert_not_os_path_exists": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_no_unpacked_dir_test_gc_no_unpacked_dir.assert_not_os_path_exists", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 215, "end_line": 229, "span_ids": ["test_gc_no_unpacked_dir"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_no_unpacked_dir(tmp_dir, dvc):\n    dir_stages = tmp_dir.dvc_gen({\"dir\": {\"file\": \"text\"}})\n    dvc.status()\n\n    os.remove(\"dir.dvc\")\n    unpackeddir = (\n        dir_stages[0].outs[0].cache_path + LocalCache.UNPACKED_DIR_SUFFIX\n    )\n\n    # older (pre 1.0) versions of dvc used to generate this dir\n    shutil.copytree(\"dir\", unpackeddir)\n    assert os.path.exists(unpackeddir)\n\n    dvc.gc(force=True, workspace=True)\n    assert not os.path.exists(unpackeddir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_without_workspace_raises_error_test_gc_cloud_with_or_without_specifier.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_without_workspace_raises_error_test_gc_cloud_with_or_without_specifier.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 231, "end_line": 254, "span_ids": ["test_gc_cloud_with_or_without_specifier", "test_gc_without_workspace_raises_error"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_without_workspace_raises_error(tmp_dir, dvc):\n    dvc.gc(force=True, workspace=True)  # works without error\n\n    from dvc.exceptions import InvalidArgumentError\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.gc(force=True)\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.gc(force=True, workspace=False)\n\n\ndef test_gc_cloud_with_or_without_specifier(tmp_dir, erepo_dir, local_cloud):\n    erepo_dir.add_remote(config=local_cloud.config)\n    dvc = erepo_dir.dvc\n    from dvc.exceptions import InvalidArgumentError\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.gc(force=True, cloud=True)\n\n    dvc.gc(cloud=True, all_tags=True)\n    dvc.gc(cloud=True, all_commits=True)\n    dvc.gc(cloud=True, all_branches=True)\n    dvc.gc(cloud=True, all_commits=False, all_branches=True, all_tags=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_rev_test_get_a_dvc_file.with_pytest_raises_GetDVC.Repo_get_os_fspath_erepo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_rev_test_get_a_dvc_file.with_pytest_raises_GetDVC.Repo_get_os_fspath_erepo_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 81, "end_line": 98, "span_ids": ["test_get_from_non_dvc_repo", "test_get_repo_rev", "test_get_a_dvc_file"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_repo_rev(tmp_dir, erepo_dir):\n    with erepo_dir.chdir(), erepo_dir.branch(\"branch\", new=True):\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file on branch\")\n\n    Repo.get(os.fspath(erepo_dir), \"file\", \"file_imported\", rev=\"branch\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"contents\"\n\n\ndef test_get_from_non_dvc_repo(tmp_dir, git_dir):\n    git_dir.scm_gen({\"some_file\": \"contents\"}, commit=\"create file\")\n\n    Repo.get(os.fspath(git_dir), \"some_file\", \"file_imported\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"contents\"\n\n\ndef test_get_a_dvc_file(tmp_dir, erepo_dir):\n    with pytest.raises(GetDVCFileError):\n        Repo.get(os.fspath(erepo_dir), \"some_file.dvc\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_None_1_test_unknown_path.with_pytest_raises_PathMi.Repo_get_os_fspath_erepo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_None_1_test_unknown_path.with_pytest_raises_PathMi.Repo_get_os_fspath_erepo_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 136, "end_line": 149, "span_ids": ["test_unknown_path", "test_non_cached_output", "test_absolute_file_outside_repo", "test_absolute_file_outside_git_repo"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# https://github.com/iterative/dvc/pull/2837#discussion_r352123053\ndef test_absolute_file_outside_repo(tmp_dir, erepo_dir):\n    with pytest.raises(PathMissingError):\n        Repo.get(os.fspath(erepo_dir), \"/root/\")\n\n\ndef test_absolute_file_outside_git_repo(tmp_dir, git_dir):\n    with pytest.raises(PathMissingError):\n        Repo.get(os.fspath(git_dir), \"/root/\")\n\n\ndef test_unknown_path(tmp_dir, erepo_dir):\n    with pytest.raises(PathMissingError):\n        Repo.get(os.fspath(erepo_dir), \"a_non_existing_file\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_to_dir_test_get_from_non_dvc_master.assert_tmp_dir_some_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_to_dir_test_get_from_non_dvc_master.assert_tmp_dir_some_d", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 152, "end_line": 172, "span_ids": ["test_get_to_dir", "test_get_from_non_dvc_master"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"dname\", [\".\", \"dir\", \"dir/subdir\"])\ndef test_get_to_dir(tmp_dir, erepo_dir, dname):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file\")\n\n    makedirs(dname, exist_ok=True)\n\n    Repo.get(os.fspath(erepo_dir), \"file\", dname)\n\n    assert (tmp_dir / dname).is_dir()\n    assert (tmp_dir / dname / \"file\").read_text() == \"contents\"\n\n\ndef test_get_from_non_dvc_master(tmp_dir, git_dir):\n    with git_dir.chdir(), git_dir.branch(\"branch\", new=True):\n        git_dir.init(dvc=True)\n        git_dir.dvc_gen(\"some_file\", \"some text\", commit=\"create some file\")\n\n    Repo.get(os.fspath(git_dir), \"some_file\", out=\"some_dst\", rev=\"branch\")\n\n    assert (tmp_dir / \"some_dst\").read_text() == \"some text\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_cached_file_test_import_cached_file.assert_filecmp_cmp_erepo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_cached_file_test_import_cached_file.assert_filecmp_cmp_erepo_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 49, "end_line": 64, "span_ids": ["test_import_cached_file"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_cached_file(erepo_dir, tmp_dir, dvc, scm, monkeypatch):\n    src = \"some_file\"\n    dst = \"some_file_imported\"\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({src: \"hello\"}, commit=\"add a regular file\")\n\n    tmp_dir.dvc_gen({dst: \"hello\"})\n    (tmp_dir / dst).unlink()\n\n    remote_exception = NoRemoteError(\"dvc import\")\n    with patch.object(cloud.DataCloud, \"pull\", side_effect=remote_exception):\n        tmp_dir.dvc.imp(os.fspath(erepo_dir), src, dst)\n\n    assert (tmp_dir / dst).is_file()\n    assert filecmp.cmp(erepo_dir / src, tmp_dir / dst, shallow=False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_from_bare_git_repo_test_import_from_bare_git_repo.with_dvc_repo_chdir_.dvc_repo_dvc_imp_os_fspat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_from_bare_git_repo_test_import_from_bare_git_repo.with_dvc_repo_chdir_.dvc_repo_dvc_imp_os_fspat", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 347, "end_line": 364, "span_ids": ["test_import_from_bare_git_repo"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_from_bare_git_repo(\n    tmp_dir, make_tmp_dir, erepo_dir, local_cloud\n):\n    import git\n\n    git.Repo.init(os.fspath(tmp_dir), bare=True)\n\n    erepo_dir.add_remote(config=local_cloud.config)\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({\"foo\": \"foo\"}, commit=\"initial\")\n    erepo_dir.dvc.push()\n\n    erepo_dir.scm.gitpython.repo.create_remote(\"origin\", os.fspath(tmp_dir))\n    erepo_dir.scm.gitpython.repo.remote(\"origin\").push(\"master\")\n\n    dvc_repo = make_tmp_dir(\"dvc-repo\", scm=True, dvc=True)\n    with dvc_repo.chdir():\n        dvc_repo.dvc.imp(os.fspath(tmp_dir), \"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_TestImportFilename_TestImportFilename.test.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_TestImportFilename_TestImportFilename.test.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 53, "end_line": 72, "span_ids": ["TestImportFilename.setUp", "TestImportFilename.test", "TestImportFilename"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestImportFilename(TestDvc):\n    def setUp(self):\n        super().setUp()\n        tmp_dir = self.mkdtemp()\n        self.external_source = os.path.join(tmp_dir, \"file\")\n        with open(self.external_source, \"w\") as fobj:\n            fobj.write(\"content\")\n\n    def test(self):\n        ret = main([\"import-url\", \"--file\", \"bar.dvc\", self.external_source])\n        self.assertEqual(0, ret)\n        self.assertTrue(os.path.exists(\"bar.dvc\"))\n\n        os.remove(\"bar.dvc\")\n        os.mkdir(\"sub\")\n\n        path = os.path.join(\"sub\", \"bar.dvc\")\n        ret = main([\"import-url\", \"--file\", path, self.external_source])\n        self.assertEqual(0, ret)\n        self.assertTrue(os.path.exists(path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_from_collections_import_O_assert_eq_lockfile.assert_previous_new": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lockfile.py_from_collections_import_O_assert_eq_lockfile.assert_previous_new", "embedding": null, "metadata": {"file_path": "tests/func/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 31, "span_ids": ["imports", "read_lock_file", "assert_eq_lockfile"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import OrderedDict\nfrom operator import itemgetter\n\nfrom dvc.dvcfile import PIPELINE_LOCK\nfrom dvc.stage.utils import split_params_deps\nfrom dvc.utils.fs import remove\nfrom dvc.utils.serialize import dumps_yaml, parse_yaml_for_update\nfrom tests.func.test_run_multistage import supported_params\n\nFS_STRUCTURE = {\n    \"foo\": \"bar\\nfoobar\",\n    \"bar\": \"foo\\nfoobar\",\n    \"foobar\": \"foobar\\nbar\",\n    \"params.yaml\": dumps_yaml(supported_params),\n    \"params2.yaml\": dumps_yaml(supported_params),\n}\n\n\ndef read_lock_file(file=PIPELINE_LOCK):\n    with open(file) as f:\n        data = parse_yaml_for_update(f.read(), file)\n    assert isinstance(data, OrderedDict)\n    return data\n\n\ndef assert_eq_lockfile(previous, new):\n    for content in (previous, new):\n        assert isinstance(content, OrderedDict)\n\n    # if they both are OrderedDict, then `==` will also check for order\n    assert previous == new", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_dvc_only_recursive_test_ls_repo_dvc_only_recursive.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_dvc_only_recursive_test_ls_repo_dvc_only_recursive.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 129, "end_line": 142, "span_ids": ["test_ls_repo_dvc_only_recursive"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_dvc_only_recursive(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    files = Repo.ls(os.fspath(tmp_dir), recursive=True, dvc_only=True)\n    match_files(\n        files,\n        (\n            ((\"data\", \"subcontent\", \"statistics\", \"data.csv\"), True),\n            ((\"data\", \"subcontent\", \"data.xml\"), True),\n            ((\"model\", \"people.csv\"), True),\n            ((\"structure.xml\",), True),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_dir_test_ls_repo_with_path_dir_dvc_only_empty.with_pytest_raises_PathMi.Repo_ls_os_fspath_tmp_dir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_dir_test_ls_repo_with_path_dir_dvc_only_empty.with_pytest_raises_PathMi.Repo_ls_os_fspath_tmp_dir", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 145, "end_line": 168, "span_ids": ["test_ls_repo_with_path_dir_dvc_only_empty", "test_ls_repo_with_path_dir"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_path_dir(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    files = Repo.ls(os.fspath(tmp_dir), path=\"model\")\n    match_files(\n        files,\n        (\n            ((\"script.py\",), False),\n            ((\"train.py\",), False),\n            ((\"people.csv\",), True),\n            ((\"people.csv.dvc\",), False),\n            ((\".gitignore\",), False),\n        ),\n    )\n\n\ndef test_ls_repo_with_path_dir_dvc_only_empty(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n    tmp_dir.scm_gen({\"folder/.keep\": \"content\"}, commit=\"add .keep\")\n\n    with pytest.raises(PathMissingError):\n        Repo.ls(os.fspath(tmp_dir), path=\"folder\", dvc_only=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_subdir_dvc_only_test_ls_repo_with_path_subdir_dvc_only_recursive.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_subdir_dvc_only_test_ls_repo_with_path_subdir_dvc_only_recursive.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 188, "end_line": 205, "span_ids": ["test_ls_repo_with_path_subdir_dvc_only_recursive", "test_ls_repo_with_path_subdir_dvc_only"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_path_subdir_dvc_only(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    path = os.path.join(\"data\", \"subcontent\")\n    files = Repo.ls(os.fspath(tmp_dir), path, dvc_only=True)\n    match_files(files, (((\"data.xml\",), True), ((\"statistics\",), False),))\n\n\ndef test_ls_repo_with_path_subdir_dvc_only_recursive(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    path = os.path.join(\"data\", \"subcontent\")\n    files = Repo.ls(os.fspath(tmp_dir), path, dvc_only=True, recursive=True)\n    match_files(\n        files, (((\"data.xml\",), True), ((\"statistics\", \"data.csv\"), True),)\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_dir_hash_should_be_key_order_agnostic_test_dir_hash_should_be_key_order_agnostic.assert_hash1_hash2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_dir_hash_should_be_key_order_agnostic_test_dir_hash_should_be_key_order_agnostic.assert_hash1_hash2", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 149, "end_line": 170, "span_ids": ["test_dir_hash_should_be_key_order_agnostic"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dir_hash_should_be_key_order_agnostic(tmp_dir, dvc):\n    tmp_dir.gen({\"data\": {\"1\": \"1 content\", \"2\": \"2 content\"}})\n\n    path_info = PathInfo(\"data\")\n\n    dir_info = DirInfo.from_list(\n        [{\"relpath\": \"1\", \"md5\": \"1\"}, {\"relpath\": \"2\", \"md5\": \"2\"}]\n    )\n    with patch.object(\n        BaseTree, \"_collect_dir\", return_value=dir_info,\n    ):\n        hash1 = dvc.cache.local.tree.get_hash(path_info)\n\n    dir_info = DirInfo.from_list(\n        [{\"md5\": \"1\", \"relpath\": \"1\"}, {\"md5\": \"2\", \"relpath\": \"2\"}]\n    )\n    with patch.object(\n        BaseTree, \"_collect_dir\", return_value=dir_info,\n    ):\n        hash2 = dvc.cache.local.tree.get_hash(path_info)\n\n    assert hash1 == hash2", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_external_dir_resource_on_no_cache_test_external_dir_resource_on_no_cache.with_pytest_raises_Remote.dvc_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_external_dir_resource_on_no_cache_test_external_dir_resource_on_no_cache.with_pytest_raises_Remote.dvc_run_", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 254, "end_line": 266, "span_ids": ["test_external_dir_resource_on_no_cache"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_external_dir_resource_on_no_cache(tmp_dir, dvc, tmp_path_factory):\n    # https://github.com/iterative/dvc/issues/2647, is some situations\n    # (external dir dependency) cache is required to calculate dir md5\n    external_dir = tmp_path_factory.mktemp(\"external_dir\")\n    (external_dir / \"file\").write_text(\"content\")\n\n    dvc.cache.local = None\n    with pytest.raises(RemoteCacheRequiredError):\n        dvc.run(\n            cmd=\"echo hello world\",\n            outs=[os.fspath(external_dir)],\n            single_stage=True,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_unset_test_remote_modify_unset.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_unset_test_remote_modify_unset.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 274, "end_line": 294, "span_ids": ["test_remote_modify_unset"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_modify_unset(dvc):\n    assert main([\"remote\", \"add\", \"-d\", \"myremote\", \"gdrive://test/test\"]) == 0\n    config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    assert config['remote \"myremote\"'] == {\"url\": \"gdrive://test/test\"}\n\n    assert (\n        main([\"remote\", \"modify\", \"myremote\", \"gdrive_client_id\", \"something\"])\n        == 0\n    )\n    config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    assert config['remote \"myremote\"'] == {\n        \"url\": \"gdrive://test/test\",\n        \"gdrive_client_id\": \"something\",\n    }\n\n    assert (\n        main([\"remote\", \"modify\", \"myremote\", \"gdrive_client_id\", \"--unset\"])\n        == 0\n    )\n    config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    assert config['remote \"myremote\"'] == {\"url\": \"gdrive://test/test\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_default_test_remote_modify_default.assert_local_config_core": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_default_test_remote_modify_default.assert_local_config_core", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 297, "end_line": 312, "span_ids": ["test_remote_modify_default"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_modify_default(dvc):\n    remote_repo = \"repo_level\"\n    remote_local = \"local_level\"\n    wrong_name = \"anything\"\n    assert main([\"remote\", \"add\", remote_repo, \"s3://bucket/repo\"]) == 0\n    assert main([\"remote\", \"add\", remote_local, \"s3://bucket/local\"]) == 0\n\n    assert main([\"remote\", \"default\", wrong_name]) == 251\n    assert main([\"remote\", \"default\", remote_repo]) == 0\n    assert main([\"remote\", \"default\", \"--local\", remote_local]) == 0\n\n    repo_config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    local_config = configobj.ConfigObj(dvc.config.files[\"local\"])\n\n    assert repo_config[\"core\"][\"remote\"] == remote_repo\n    assert local_config[\"core\"][\"remote\"] == remote_local", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_rename_test_remote_rename.assert_config_remote_n": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_rename_test_remote_rename.assert_config_remote_n", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 315, "end_line": 337, "span_ids": ["test_remote_rename"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_rename(dvc):\n    remote_name = \"drive\"\n    remote_url = \"gdrive://test/test\"\n    new_name = \"new\"\n    other_name = \"other\"\n    # prepare\n    assert main([\"remote\", \"add\", remote_name, remote_url]) == 0\n    config = dvc.config.load_one(\"repo\")\n    assert config[\"remote\"][remote_name][\"url\"] == remote_url\n    assert new_name not in config.get(\"remote\", {})\n\n    # rename failed\n    assert main([\"remote\", \"rename\", remote_name]) == 254\n    assert main([\"remote\", \"rename\", new_name, other_name]) == 251\n    config = dvc.config.load_one(\"repo\")\n    assert config[\"remote\"][remote_name][\"url\"] == remote_url\n    assert new_name not in config.get(\"remote\", {})\n\n    # rename success\n    assert main([\"remote\", \"rename\", remote_name, new_name]) == 0\n    config = dvc.config.load_one(\"repo\")\n    assert remote_name not in config.get(\"remote\", {})\n    assert config[\"remote\"][new_name][\"url\"] == remote_url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_duplicated_test_remote_duplicated.None_6": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_duplicated_test_remote_duplicated.None_6", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 340, "end_line": 358, "span_ids": ["test_remote_duplicated"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_duplicated(dvc):\n    remote_name = \"drive\"\n    remote_url = \"gdrive://test/test\"\n    used_name = \"overlap\"\n    another_url = \"gdrive://test/test1\"\n    # prepare\n    assert main([\"remote\", \"add\", remote_name, remote_url]) == 0\n    assert main([\"remote\", \"add\", \"--local\", used_name, another_url]) == 0\n    config = dvc.config.load_one(\"repo\")\n    assert config[\"remote\"][remote_name][\"url\"] == remote_url\n    local_config = dvc.config.load_one(\"local\")\n    assert local_config[\"remote\"][used_name][\"url\"] == another_url\n\n    # rename duplicated\n    assert main([\"remote\", \"rename\", remote_name, used_name]) == 251\n    config = dvc.config.load_one(\"repo\")\n    assert config[\"remote\"][remote_name][\"url\"] == remote_url\n    local_config = dvc.config.load_one(\"local\")\n    assert local_config[\"remote\"][used_name][\"url\"] == another_url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_remove_non_existent_file_test_remove_broken_symlink.assert_not_tmp_dir_sta": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_remove_non_existent_file_test_remove_broken_symlink.assert_not_tmp_dir_sta", "embedding": null, "metadata": {"file_path": "tests/func/test_remove.py", "file_name": "test_remove.py", "file_type": "text/x-python", "category": "test", "start_line": 28, "end_line": 50, "span_ids": ["test_remove_non_existent_file", "test_remove_broken_symlink"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_non_existent_file(tmp_dir, dvc):\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.remove(\"non_existent_dvc_file.dvc\")\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.remove(\"non_existent_stage_name\")\n\n\ndef test_remove_broken_symlink(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.cache.local.cache_types = [\"symlink\"]\n\n    (stage,) = dvc.add(\"foo\")\n    remove(dvc.cache.local.cache_dir)\n    assert System.is_symlink(\"foo\")\n\n    with pytest.raises(DvcException):\n        dvc.remove(stage.addressing)\n    assert os.path.lexists(\"foo\")\n    assert (tmp_dir / stage.relpath).exists()\n\n    dvc.remove(stage.addressing, outs=True)\n    assert not os.path.lexists(\"foo\")\n    assert not (tmp_dir / stage.relpath).exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_filecmp_SingleStageRun._get_stage_target.return.stage_addressing": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_filecmp_SingleStageRun._get_stage_target.return.stage_addressing", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["imports", "SingleStageRun._run", "SingleStageRun", "SingleStageRun._get_stage_target"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import filecmp\nimport os\nimport re\nimport shutil\nfrom pathlib import Path\n\nimport pytest\nfrom mock import patch\n\nfrom dvc.dvcfile import DVC_FILE, Dvcfile\nfrom dvc.exceptions import (\n    CyclicGraphError,\n    ReproductionError,\n    StagePathAsOutputError,\n)\nfrom dvc.main import main\nfrom dvc.output.base import BaseOutput\nfrom dvc.stage import Stage\nfrom dvc.stage.exceptions import StageFileDoesNotExistError\nfrom dvc.system import System\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils import file_md5, relpath\nfrom dvc.utils.fs import remove\nfrom dvc.utils.serialize import dump_yaml, load_yaml\nfrom tests.basic_env import TestDvc\n\n\nclass SingleStageRun:\n    def _run(self, **kwargs):\n        kwargs[\"single_stage\"] = True\n        kwargs.pop(\"name\", None)\n        return self.dvc.run(**kwargs)  # noqa, pylint: disable=no-member\n\n    @staticmethod\n    def _get_stage_target(stage):\n        return stage.addressing", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproForceDownstream_TestReproForceDownstream.test.self_assertEqual_stages_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproForceDownstream_TestReproForceDownstream.test.self_assertEqual_stages_1", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 451, "end_line": 497, "span_ids": ["TestReproForceDownstream.test", "TestReproForceDownstream"], "tokens": 393}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproForceDownstream(TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.FOO)\n        self.assertEqual(len(stages), 1)\n        foo_stage = stages[0]\n        self.assertTrue(foo_stage is not None)\n\n        code1 = \"code1.py\"\n        shutil.copyfile(self.CODE, code1)\n        file1 = \"file1\"\n        file1_stage = self.dvc.run(\n            outs=[file1],\n            deps=[self.FOO, code1],\n            cmd=f\"python {code1} {self.FOO} {file1}\",\n            single_stage=True,\n        )\n        self.assertTrue(file1_stage is not None)\n\n        code2 = \"code2.py\"\n        shutil.copyfile(self.CODE, code2)\n        file2 = \"file2\"\n        file2_stage = self.dvc.run(\n            outs=[file2],\n            deps=[file1, code2],\n            cmd=f\"python {code2} {file1} {file2}\",\n            single_stage=True,\n        )\n        self.assertTrue(file2_stage is not None)\n\n        code3 = \"code3.py\"\n        shutil.copyfile(self.CODE, code3)\n        file3 = \"file3\"\n        file3_stage = self.dvc.run(\n            outs=[file3],\n            deps=[file2, code3],\n            cmd=f\"python {code3} {file2} {file3}\",\n            single_stage=True,\n        )\n        self.assertTrue(file3_stage is not None)\n\n        with open(code2, \"a\") as fobj:\n            fobj.write(\"\\n\\n\")\n\n        stages = self.dvc.reproduce(file3_stage.path, force_downstream=True)\n        self.assertEqual(len(stages), 2)\n        self.assertEqual(stages[0].path, file2_stage.path)\n        self.assertEqual(stages[1].path, file3_stage.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproFrozen_TestReproFrozen.test.None_6": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproFrozen_TestReproFrozen.test.None_6", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 557, "end_line": 580, "span_ids": ["TestReproFrozen.test", "TestReproFrozen"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproFrozen(TestReproChangedData):\n    def test(self):\n        file2 = \"file2\"\n        file2_stage = self._run(\n            fname=file2 + \".dvc\",\n            outs=[file2],\n            deps=[self.file1, self.CODE],\n            cmd=f\"python {self.CODE} {self.file1} {file2}\",\n            name=\"copy-file1-file2\",\n        )\n\n        self.swap_foo_with_bar()\n\n        ret = main([\"freeze\", self._get_stage_target(file2_stage)])\n        self.assertEqual(ret, 0)\n        stages = self.dvc.reproduce(self._get_stage_target(file2_stage))\n        self.assertEqual(len(stages), 0)\n\n        ret = main([\"unfreeze\", self._get_stage_target(file2_stage)])\n        self.assertEqual(ret, 0)\n        stages = self.dvc.reproduce(self._get_stage_target(file2_stage))\n        self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))\n        self.assertTrue(filecmp.cmp(file2, self.BAR, shallow=False))\n        self.assertEqual(len(stages), 3)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproFrozen.test_non_existing_TestReproFrozen.test_non_existing.self_assertNotEqual_ret_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproFrozen.test_non_existing_TestReproFrozen.test_non_existing.self_assertNotEqual_ret_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 582, "end_line": 593, "span_ids": ["TestReproFrozen.test_non_existing"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproFrozen(TestReproChangedData):\n\n    def test_non_existing(self):\n        with self.assertRaises(StageFileDoesNotExistError):\n            self.dvc.freeze(\"Dvcfile\")\n            self.dvc.freeze(\"pipelines.yaml\")\n            self.dvc.freeze(\"pipelines.yaml:name\")\n            self.dvc.freeze(\"Dvcfile:name\")\n            self.dvc.freeze(\"stage.dvc\")\n            self.dvc.freeze(\"stage.dvc:name\")\n            self.dvc.freeze(\"not-existing-stage.json\")\n\n        ret = main([\"freeze\", \"non-existing-stage\"])\n        self.assertNotEqual(ret, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproFrozenCallback_TestReproFrozenUnchanged.test.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproFrozenCallback_TestReproFrozenUnchanged.test.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 596, "end_line": 634, "span_ids": ["TestReproFrozenUnchanged.test", "TestReproFrozenCallback", "TestReproFrozenCallback.test", "TestReproFrozenUnchanged"], "tokens": 314}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproFrozenCallback(SingleStageRun, TestDvc):\n    def test(self):\n        file1 = \"file1\"\n        file1_stage = file1 + \".dvc\"\n        # NOTE: purposefully not specifying dependencies\n        # to create a callback stage.\n        stage = self._run(\n            fname=file1_stage,\n            outs=[file1],\n            cmd=f\"python {self.CODE} {self.FOO} {file1}\",\n            name=\"copy-FOO-file1\",\n        )\n        self.assertTrue(stage is not None)\n\n        stages = self.dvc.reproduce(self._get_stage_target(stage))\n        self.assertEqual(len(stages), 1)\n\n        self.dvc.freeze(self._get_stage_target(stage))\n        stages = self.dvc.reproduce(self._get_stage_target(stage))\n        self.assertEqual(len(stages), 0)\n\n        self.dvc.unfreeze(self._get_stage_target(stage))\n        stages = self.dvc.reproduce(self._get_stage_target(stage))\n        self.assertEqual(len(stages), 1)\n\n\nclass TestReproFrozenUnchanged(TestRepro):\n    def test(self):\n        \"\"\"\n        Check that freezing/unfreezing doesn't affect stage state\n        \"\"\"\n        target = self._get_stage_target(self.stage)\n        self.dvc.freeze(target)\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 0)\n\n        self.dvc.unfreeze(target)\n        stages = self.dvc.reproduce(target)\n        self.assertEqual(len(stages), 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_repro_when_cmd_changes_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_repro_when_cmd_changes_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1252, "end_line": 1272, "span_ids": ["test_repro_when_cmd_changes"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_cmd_changes(tmp_dir, dvc, run_copy, mocker):\n    from dvc.dvcfile import SingleStageFile\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", single_stage=True)\n    assert not dvc.reproduce(stage.addressing)\n\n    from dvc.stage.run import cmd_run\n\n    m = mocker.patch(\"dvc.stage.run.cmd_run\", wraps=cmd_run)\n\n    data = SingleStageFile(dvc, stage.path)._load()[0]\n    data[\"cmd\"] = \"  \".join(stage.cmd.split())  # change cmd spacing by two\n    dump_yaml(stage.path, data)\n\n    assert dvc.status([stage.addressing]) == {\n        stage.addressing: [\"changed checksum\"]\n    }\n    assert dvc.reproduce(stage.addressing)[0] == stage\n    m.assert_called_once_with(stage, checkpoint_func=None, dry=False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_TestReproChangedDirDataMultiStage_test_non_existing_stage_name.assert_main_freeze_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_TestReproChangedDirDataMultiStage_test_non_existing_stage_name.assert_main_freeze_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 156, "end_line": 171, "span_ids": ["test_non_existing_stage_name", "TestReproChangedDirDataMultiStage"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproChangedDirDataMultiStage(\n    MultiStageRun, test_repro.TestReproChangedDirData\n):\n    pass\n\n\ndef test_non_existing_stage_name(tmp_dir, dvc, run_copy):\n    from dvc.exceptions import DvcException\n\n    tmp_dir.gen(\"file1\", \"file1\")\n    run_copy(\"file1\", \"file2\", name=\"copy-file1-file2\")\n\n    with pytest.raises(DvcException):\n        dvc.freeze(\":copy-file1-file3\")\n\n    assert main([\"freeze\", \":copy-file1-file3\"]) != 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_cmd_changes_test_repro_when_cmd_changes.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_when_cmd_changes_test_repro_when_cmd_changes.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 286, "end_line": 302, "span_ids": ["test_repro_when_cmd_changes"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_when_cmd_changes(tmp_dir, dvc, run_copy, mocker):\n    from dvc.dvcfile import PipelineFile\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-file\")\n    target = \"copy-file\"\n    assert not dvc.reproduce(target)\n\n    from dvc.stage.run import cmd_run\n\n    m = mocker.patch(\"dvc.stage.run.cmd_run\", wraps=cmd_run)\n    stage.cmd = \"  \".join(stage.cmd.split())  # change cmd spacing by two\n    PipelineFile(dvc, PIPELINE_FILE)._dump_pipeline_file(stage)\n\n    assert dvc.status([target]) == {target: [\"changed command\"]}\n    assert dvc.reproduce(target)[0] == stage\n    m.assert_called_once_with(stage, checkpoint_func=None, dry=False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_os_test_push_pull.with_erepo_dir_chdir_.assert_os_listdir_erepo_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_os_test_push_pull.with_erepo_dir_chdir_.assert_os_listdir_erepo_d", "embedding": null, "metadata": {"file_path": "tests/func/test_run_cache.py", "file_name": "test_run_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 20, "span_ids": ["imports", "test_push_pull", "_recurse_count_files"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.dvcfile import PIPELINE_LOCK\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import remove\n\n\ndef _recurse_count_files(path):\n    return len([os.path.join(r, f) for r, _, fs in os.walk(path) for f in fs])\n\n\ndef test_push_pull(tmp_dir, dvc, erepo_dir, run_copy, local_remote):\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    assert dvc.push(run_cache=True) == 2\n    erepo_dir.add_remote(config=local_remote.config)\n    with erepo_dir.chdir():\n        assert not os.path.exists(erepo_dir.dvc.stage_cache.cache_dir)\n        assert erepo_dir.dvc.pull(run_cache=True)[\"fetched\"] == 0\n        assert os.listdir(erepo_dir.dvc.stage_cache.cache_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_restore_test_restore.assert_tmp_dir_PIPELIN": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_restore_test_restore.assert_tmp_dir_PIPELIN", "embedding": null, "metadata": {"file_path": "tests/func/test_run_cache.py", "file_name": "test_run_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 22, "end_line": 38, "span_ids": ["test_restore"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_restore(tmp_dir, dvc, run_copy, mocker):\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    mock_restore = mocker.spy(dvc.stage_cache, \"restore\")\n    mock_run = mocker.patch(\"dvc.stage.run.cmd_run\")\n\n    # removing any information that `dvc` could use to re-generate from\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / PIPELINE_LOCK).unlink()\n\n    (stage,) = dvc.reproduce(\"copy-foo-bar\")\n\n    mock_restore.assert_called_once_with(stage)\n    mock_run.assert_not_called()\n    assert (tmp_dir / \"bar\").exists() and not (tmp_dir / \"foo\").unlink()\n    assert (tmp_dir / PIPELINE_LOCK).exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_save_test_uncached_outs_are_cached.assert_os_path_exists_rel": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_save_test_uncached_outs_are_cached.assert_os_path_exists_rel", "embedding": null, "metadata": {"file_path": "tests/func/test_run_cache.py", "file_name": "test_run_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 77, "span_ids": ["test_do_not_save_on_no_exec_and_dry", "test_save", "test_uncached_outs_are_cached"], "tokens": 329}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_save(tmp_dir, dvc, run_copy):\n    run_cache_dir = dvc.stage_cache.cache_dir\n    assert not os.path.exists(run_cache_dir)\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    assert _recurse_count_files(run_cache_dir) == 1\n    assert dvc.stage_cache._load(stage)\n\n\ndef test_do_not_save_on_no_exec_and_dry(tmp_dir, dvc, run_copy):\n    run_cache_dir = dvc.stage_cache.cache_dir\n    assert not os.path.exists(run_cache_dir)\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\", no_exec=True)\n\n    assert _recurse_count_files(run_cache_dir) == 0\n    assert not dvc.stage_cache._load(stage)\n\n    (stage,) = dvc.reproduce(\"copy-foo-bar\", dry=True)\n\n    assert _recurse_count_files(run_cache_dir) == 0\n    assert not dvc.stage_cache._load(stage)\n\n\ndef test_uncached_outs_are_cached(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = dvc.run(\n        deps=[\"foo\"],\n        cmd=\"cp foo bar\",\n        outs_no_cache=[\"bar\"],\n        name=\"copy-foo-bar\",\n    )\n    stage.outs[0].hash_info = stage.outs[0].get_hash()\n    assert os.path.exists(relpath(stage.outs[0].cache_path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_memory_for_multiple_runs_of_same_stage_test_memory_for_multiple_runs_of_same_stage.None_8": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_memory_for_multiple_runs_of_same_stage_test_memory_for_multiple_runs_of_same_stage.None_8", "embedding": null, "metadata": {"file_path": "tests/func/test_run_cache.py", "file_name": "test_run_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 83, "end_line": 117, "span_ids": ["test_memory_for_multiple_runs_of_same_stage"], "tokens": 346}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_memory_for_multiple_runs_of_same_stage(\n    tmp_dir, dvc, run_copy, mocker\n):\n    tmp_dir.gen(\"foo\", \"foo\")\n    assert not os.path.exists(dvc.stage_cache.cache_dir)\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    assert _recurse_count_files(dvc.stage_cache.cache_dir) == 1\n    tmp_dir.gen(\"foo\", \"foobar\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    assert _recurse_count_files(dvc.stage_cache.cache_dir) == 2\n\n    from dvc.stage import run as _run\n\n    mock_restore = mocker.spy(dvc.stage_cache, \"restore\")\n    mock_run = mocker.spy(_run, \"cmd_run\")\n\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / PIPELINE_LOCK).unlink()\n    (stage,) = dvc.reproduce(\"copy-foo-bar\")\n\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    assert (tmp_dir / \"bar\").read_text() == \"foobar\"\n    mock_run.assert_not_called()\n    mock_restore.assert_called_once_with(stage)\n    mock_restore.reset_mock()\n\n    (tmp_dir / PIPELINE_LOCK).unlink()\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.reproduce(\"copy-foo-bar\")\n\n    assert (tmp_dir / \"bar\").read_text() == \"foo\"\n    mock_run.assert_not_called()\n    mock_restore.assert_called_once_with(stage)\n    assert (tmp_dir / \"bar\").exists() and not (tmp_dir / \"foo\").unlink()\n    assert (tmp_dir / PIPELINE_LOCK).exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_no_exec_test_run_no_exec.assert_data_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_no_exec_test_run_no_exec.assert_data_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 24, "end_line": 45, "span_ids": ["test_run_no_exec"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_no_exec(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\n    from dvc.stage import PipelineStage\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert not os.path.exists(PIPELINE_FILE)\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-to-bar\", no_exec=True)\n    assert isinstance(stage, PipelineStage)\n    assert stage.name == \"copy-foo-to-bar\"\n    assert os.path.exists(PIPELINE_FILE)\n    assert not os.path.exists(PIPELINE_LOCK)\n\n    data, _ = stage.dvcfile._load()\n    assert data == {\n        \"stages\": {\n            \"copy-foo-to-bar\": {\n                \"cmd\": \"python copy.py foo bar\",\n                \"deps\": [\"copy.py\", \"foo\"],\n                \"outs\": [\"bar\"],\n            }\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_multi_stage_repeat_test_run_multi_stage_repeat.assert_stage_name_for_st": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_multi_stage_repeat_test_run_multi_stage_repeat.assert_stage_name_for_st", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 62, "end_line": 77, "span_ids": ["test_run_multi_stage_repeat"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_multi_stage_repeat(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE, Dvcfile\n    from dvc.stage import PipelineStage\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"foo1\", name=\"copy-foo-foo1\")\n    run_copy(\"foo1\", \"foo2\", name=\"copy-foo1-foo2\")\n    run_copy(\"foo2\", \"foo3\", single_stage=True)\n\n    stages = list(Dvcfile(dvc, PIPELINE_FILE).stages.values())\n    assert len(stages) == 2\n    assert all(isinstance(stage, PipelineStage) for stage in stages)\n    assert {stage.name for stage in stages} == {\n        \"copy-foo-foo1\",\n        \"copy-foo1-foo2\",\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_params_custom_file_test_run_params_custom_file.assert_data_stages_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_params_custom_file_test_run_params_custom_file.assert_data_stages_re", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 257, "end_line": 277, "span_ids": ["test_run_params_custom_file"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_params_custom_file(tmp_dir, dvc):\n    from dvc.dependency import ParamsDependency\n\n    dump_yaml(tmp_dir / \"params2.yaml\", supported_params)\n    stage = dvc.run(\n        name=\"read_params\",\n        params=[\"params2.yaml:lists\"],\n        cmd=\"cat params2.yaml\",\n    )\n\n    isinstance(stage.deps[0], ParamsDependency)\n    assert stage.deps[0].params == [\"lists\"]\n    lockfile = stage.dvcfile._lockfile\n    assert lockfile.load()[\"read_params\"][\"params\"] == {\n        \"params2.yaml\": {\"lists\": [42, 42.0, \"42\"]}\n    }\n\n    data, _ = stage.dvcfile._load()\n    assert data[\"stages\"][\"read_params\"][\"params\"] == [\n        {\"params2.yaml\": [\"lists\"]}\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunEmpty_TestRunNoExec.test.with_open_gitignore_a.self_assertEqual_fobj_rea": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunEmpty_TestRunNoExec.test.with_open_gitignore_a.self_assertEqual_fobj_rea", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 77, "end_line": 115, "span_ids": ["TestRunNoExec.test", "TestRunMissingDep", "TestRunEmpty", "TestRunNoExec", "TestRunEmpty.test", "TestRunMissingDep.test"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunEmpty(TestDvc):\n    def test(self):\n        self.dvc.run(\n            cmd=\"echo hello world\",\n            deps=[],\n            outs=[],\n            outs_no_cache=[],\n            fname=\"empty.dvc\",\n            single_stage=True,\n        )\n\n\nclass TestRunMissingDep(TestDvc):\n    def test(self):\n        from dvc.dependency.base import DependencyDoesNotExistError\n\n        with self.assertRaises(DependencyDoesNotExistError):\n            self.dvc.run(\n                cmd=\"command\",\n                deps=[\"non-existing-dep\"],\n                outs=[],\n                outs_no_cache=[],\n                fname=\"empty.dvc\",\n                single_stage=True,\n            )\n\n\nclass TestRunNoExec(TestDvcGit):\n    def test(self):\n        self.dvc.run(\n            cmd=\"python {} {} {}\".format(self.CODE, self.FOO, \"out\"),\n            deps=[self.CODE, self.FOO],\n            outs=[\"out\"],\n            no_exec=True,\n            single_stage=True,\n        )\n        self.assertFalse(os.path.exists(\"out\"))\n        with open(\".gitignore\") as fobj:\n            self.assertEqual(fobj.read(), \"/out\\n\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunStageInsideOutput_TestRunBadCwd.test_same_prefix.with_self_assertRaises_St.self_dvc_run_cmd_command": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestRunStageInsideOutput_TestRunBadCwd.test_same_prefix.with_self_assertRaises_St.self_dvc_run_cmd_command", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 205, "end_line": 247, "span_ids": ["TestRunStageInsideOutput.test_cwd", "TestRunBadCwd.test", "TestRunStageInsideOutput", "TestRunStageInsideOutput.test_file_name", "TestRunBadCwd", "TestRunBadCwd.test_same_prefix"], "tokens": 288}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRunStageInsideOutput(TestDvc):\n    def test_cwd(self):\n        self.dvc.run(\n            cmd=f\"mkdir {self.DATA_DIR}\",\n            deps=[],\n            outs=[self.DATA_DIR],\n            single_stage=True,\n        )\n\n        with self.assertRaises(StagePathAsOutputError):\n            self.dvc.run(\n                cmd=\"command\",\n                fname=os.path.join(self.DATA_DIR, \"inside-cwd.dvc\"),\n                single_stage=True,\n            )\n\n    def test_file_name(self):\n        self.dvc.run(\n            cmd=f\"mkdir {self.DATA_DIR}\",\n            deps=[],\n            outs=[self.DATA_DIR],\n            single_stage=True,\n        )\n\n        with self.assertRaises(StagePathAsOutputError):\n            self.dvc.run(\n                cmd=\"command\",\n                outs=[self.FOO],\n                fname=os.path.join(self.DATA_DIR, \"inside-cwd.dvc\"),\n                single_stage=True,\n            )\n\n\nclass TestRunBadCwd(TestDvc):\n    def test(self):\n        with self.assertRaises(StagePathOutsideError):\n            self.dvc.run(cmd=\"command\", wdir=self.mkdtemp(), single_stage=True)\n\n    def test_same_prefix(self):\n        with self.assertRaises(StagePathOutsideError):\n            path = f\"{self._root_dir}-{uuid.uuid4()}\"\n            os.mkdir(path)\n            self.dvc.run(cmd=\"command\", wdir=path, single_stage=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_rerun_deterministic_test_rerun_changed_out.with_pytest_raises_StageF.run_copy_foo_out_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_rerun_deterministic_test_rerun_changed_out.with_pytest_raises_StageF.run_copy_foo_out_fo", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 663, "end_line": 720, "span_ids": ["test_rerun_callback", "test_rerun_deterministic_ignore_cache", "test_rerun_changed_out", "test_rerun_changed_dep", "test_rerun_changed_stage", "test_rerun_deterministic"], "tokens": 478}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_rerun_deterministic(tmp_dir, run_copy):\n    tmp_dir.gen(\"foo\", \"foo content\")\n\n    assert run_copy(\"foo\", \"out\", single_stage=True) is not None\n    assert run_copy(\"foo\", \"out\", single_stage=True) is None\n\n\ndef test_rerun_deterministic_ignore_cache(tmp_dir, run_copy):\n    tmp_dir.gen(\"foo\", \"foo content\")\n\n    assert run_copy(\"foo\", \"out\", single_stage=True) is not None\n    assert (\n        run_copy(\"foo\", \"out\", run_cache=False, single_stage=True) is not None\n    )\n\n\ndef test_rerun_callback(dvc):\n    def run_callback(force=False):\n        return dvc.run(\n            cmd=\"echo content > out\",\n            outs=[\"out\"],\n            deps=[],\n            force=force,\n            single_stage=True,\n        )\n\n    assert run_callback() is not None\n    with pytest.raises(StageFileAlreadyExistsError):\n        assert run_callback() is not None\n    assert run_callback(force=True) is not None\n\n\ndef test_rerun_changed_dep(tmp_dir, run_copy):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    assert run_copy(\"foo\", \"out\", single_stage=True) is not None\n\n    tmp_dir.gen(\"foo\", \"changed content\")\n    with pytest.raises(StageFileAlreadyExistsError):\n        run_copy(\"foo\", \"out\", force=False, single_stage=True)\n    assert run_copy(\"foo\", \"out\", force=True, single_stage=True)\n\n\ndef test_rerun_changed_stage(tmp_dir, run_copy):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    assert run_copy(\"foo\", \"out\", single_stage=True) is not None\n\n    tmp_dir.gen(\"bar\", \"bar content\")\n    with pytest.raises(StageFileAlreadyExistsError):\n        run_copy(\"bar\", \"out\", force=False, single_stage=True)\n\n\ndef test_rerun_changed_out(tmp_dir, run_copy):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    assert run_copy(\"foo\", \"out\", single_stage=True) is not None\n\n    Path(\"out\").write_text(\"modification\")\n    with pytest.raises(StageFileAlreadyExistsError):\n        run_copy(\"foo\", \"out\", force=False, single_stage=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestPersistentOutput_TestPersistentOutput.test_ignore_run_cache.with_open_greetings_as.assert_hello_nhello_n_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_TestPersistentOutput_TestPersistentOutput.test_ignore_run_cache.with_open_greetings_as.assert_hello_nhello_n_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 941, "end_line": 969, "span_ids": ["TestPersistentOutput", "TestPersistentOutput.test_ignore_run_cache"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestPersistentOutput(TestDvc):\n    def test_ignore_run_cache(self):\n        warning = \"Build cache is ignored when persisting outputs.\"\n\n        with open(\"immutable\", \"w\") as fobj:\n            fobj.write(\"1\")\n\n        cmd = [\n            \"run\",\n            \"--force\",\n            \"--single-stage\",\n            \"--deps\",\n            \"immutable\",\n            \"--outs-persist\",\n            \"greetings\",\n            \"echo hello>>greetings\",\n        ]\n\n        with self._caplog.at_level(logging.WARNING, logger=\"dvc\"):\n            assert main(cmd) == 0\n            assert warning not in self._caplog.text\n\n            assert main(cmd) == 0\n            assert warning in self._caplog.text\n\n        # Even if the \"immutable\" dependency didn't change\n        # it should run the command again, as it is \"ignoring build cache\"\n        with open(\"greetings\") as fobj:\n            assert \"hello\\nhello\\n\" == fobj.read()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_bad_stage_fname_test_should_raise_on_stage_output.with_pytest_raises_Output.run_copy_foo_name_dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_bad_stage_fname_test_should_raise_on_stage_output.with_pytest_raises_Output.run_copy_foo_name_dvc", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 972, "end_line": 992, "span_ids": ["test_should_raise_on_stage_output", "test_bad_stage_fname", "test_should_raise_on_stage_dependency"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_bad_stage_fname(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo content\")\n\n    with pytest.raises(StageFileBadNameError):\n        # fname should end with .dvc\n        run_copy(\"foo\", \"foo_copy\", fname=\"out_stage\", single_stage=True)\n\n    # Check that command hasn't been run\n    assert not (tmp_dir / \"foo_copy\").exists()\n\n\ndef test_should_raise_on_stage_dependency(run_copy):\n    with pytest.raises(DependencyIsStageFileError):\n        run_copy(\"name.dvc\", \"stage_copy\", single_stage=True)\n\n\ndef test_should_raise_on_stage_output(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo content\")\n\n    with pytest.raises(OutputIsStageFileError):\n        run_copy(\"foo\", \"name.dvc\", single_stage=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_s3.py_test_link_created_on_non_nested_path_test_makedirs_doesnot_try_on_top_level_paths.tree_makedirs_base_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_s3.py_test_link_created_on_non_nested_path_test_makedirs_doesnot_try_on_top_level_paths.tree_makedirs_base_info_", "embedding": null, "metadata": {"file_path": "tests/func/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 49, "end_line": 72, "span_ids": ["test_link_created_on_non_nested_path", "test_makedirs_doesnot_try_on_top_level_paths"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@mock_s3\n@pytest.mark.parametrize(\n    \"base_info\",\n    [S3Tree.PATH_CLS(\"s3://bucket/\"), S3Tree.PATH_CLS(\"s3://bucket/ns/\")],\n)\ndef test_link_created_on_non_nested_path(base_info, tmp_dir, dvc, scm):\n    tree = S3Tree(dvc, {\"url\": str(base_info.parent)})\n    cache = CloudCache(tree)\n    s3 = cache.tree.s3.meta.client\n    s3.create_bucket(Bucket=base_info.bucket)\n    s3.put_object(\n        Bucket=base_info.bucket, Key=(base_info / \"from\").path, Body=\"data\"\n    )\n    cache.link(base_info / \"from\", base_info / \"to\")\n\n    assert cache.tree.exists(base_info / \"from\")\n    assert cache.tree.exists(base_info / \"to\")\n\n\n@mock_s3\ndef test_makedirs_doesnot_try_on_top_level_paths(tmp_dir, dvc, scm):\n    base_info = S3Tree.PATH_CLS(\"s3://bucket/\")\n    tree = S3Tree(dvc, {\"url\": str(base_info)})\n    tree.makedirs(base_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_os_test_init_sub_dir.assert_scm_root_dir_os": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_os_test_init_sub_dir.assert_scm_root_dir_os", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 33, "span_ids": ["test_init_none", "test_init_sub_dir", "imports", "test_init_git", "test_init_no_git"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\nfrom git import Repo\n\nfrom dvc.scm import SCM, Git, NoSCM\nfrom dvc.scm.base import SCMError\nfrom dvc.system import System\nfrom tests.basic_env import TestGit, TestGitSubmodule\nfrom tests.utils import get_gitignore_content\n\n\ndef test_init_none(tmp_dir):\n    assert isinstance(SCM(os.fspath(tmp_dir), no_scm=True), NoSCM)\n\n\ndef test_init_git(tmp_dir):\n    Repo.init(os.fspath(tmp_dir))\n    assert isinstance(SCM(os.fspath(tmp_dir)), Git)\n\n\ndef test_init_no_git(tmp_dir):\n    with pytest.raises(SCMError):\n        SCM(os.fspath(tmp_dir))\n\n\ndef test_init_sub_dir(tmp_dir):\n    Repo.init(os.fspath(tmp_dir))\n    subdir = tmp_dir / \"dir\"\n    subdir.mkdir()\n\n    scm = SCM(os.fspath(subdir))\n    assert scm.root_dir == os.fspath(tmp_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_get_gitignore_test_get_gitignore_symlink.assert_gitignore_os_fs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_get_gitignore_test_get_gitignore_symlink.assert_gitignore_os_fs", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 99, "end_line": 121, "span_ids": ["test_get_gitignore", "test_get_gitignore_symlink"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_gitignore(tmp_dir, scm):\n    tmp_dir.gen({\"file1\": \"contents\", \"dir\": {}})\n\n    data_dir = os.fspath(tmp_dir / \"file1\")\n    entry, gitignore = scm._get_gitignore(data_dir)\n    assert entry == \"/file1\"\n    assert gitignore == os.fspath(tmp_dir / \".gitignore\")\n\n    data_dir = os.fspath(tmp_dir / \"dir\")\n    entry, gitignore = scm._get_gitignore(data_dir)\n\n    assert entry == \"/dir\"\n    assert gitignore == os.fspath(tmp_dir / \".gitignore\")\n\n\ndef test_get_gitignore_symlink(tmp_dir, scm):\n    tmp_dir.gen({\"dir\": {\"subdir\": {\"data\": \"contents\"}}})\n    link = os.fspath(tmp_dir / \"link\")\n    target = os.fspath(tmp_dir / \"dir\" / \"subdir\" / \"data\")\n    System.symlink(target, link)\n    entry, gitignore = scm._get_gitignore(link)\n    assert entry == \"/link\"\n    assert gitignore == os.fspath(tmp_dir / \".gitignore\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_parent_repo_collect_stages_test_parent_repo_collect_stages.assert_deep_subrepo_stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_parent_repo_collect_stages_test_parent_repo_collect_stages.assert_deep_subrepo_stage", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 203, "end_line": 225, "span_ids": ["test_parent_repo_collect_stages"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_parent_repo_collect_stages(tmp_dir, scm, dvc):\n    tmp_dir.gen({\"subdir\": {}})\n    tmp_dir.gen({\"deep\": {\"dir\": {}}})\n    subrepo_dir = tmp_dir / \"subdir\"\n    deep_subrepo_dir = tmp_dir / \"deep\" / \"dir\"\n\n    with subrepo_dir.chdir():\n        subrepo = Repo.init(subdir=True)\n        subrepo_dir.gen(\"subrepo_file\", \"subrepo file content\")\n        subrepo.add(\"subrepo_file\")\n\n    with deep_subrepo_dir.chdir():\n        deep_subrepo = Repo.init(subdir=True)\n        deep_subrepo_dir.gen(\"subrepo_file\", \"subrepo file content\")\n        deep_subrepo.add(\"subrepo_file\")\n\n    stages = dvc.stage.collect(None)\n    subrepo_stages = subrepo.stage.collect(None)\n    deep_subrepo_stages = deep_subrepo.stage.collect(None)\n\n    assert stages == []\n    assert subrepo_stages != []\n    assert deep_subrepo_stages != []", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_strings_representation_test_stage_strings_representation.with_folder_chdir_.assert_str_stage2_f_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_strings_representation_test_stage_strings_representation.with_folder_chdir_.assert_str_stage2_f_s", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 208, "end_line": 235, "span_ids": ["test_stage_strings_representation"], "tokens": 325}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_strings_representation(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"bar\", single_stage=True)\n    assert stage1.addressing == \"bar.dvc\"\n    assert repr(stage1) == \"Stage: 'bar.dvc'\"\n    assert str(stage1) == \"stage: 'bar.dvc'\"\n\n    stage2 = run_copy(\"bar\", \"baz\", name=\"copy-bar-baz\")\n    assert stage2.addressing == \"copy-bar-baz\"\n    assert repr(stage2) == \"Stage: 'copy-bar-baz'\"\n    assert str(stage2) == \"stage: 'copy-bar-baz'\"\n\n    folder = tmp_dir / \"dir\"\n    folder.mkdir()\n    with folder.chdir():\n        # `Stage` caches `relpath` results, forcing it to reset\n        stage1.path = stage1.path\n        stage2.path = stage2.path\n\n        rel_path = os.path.relpath(stage1.path)\n        assert stage1.addressing == rel_path\n        assert repr(stage1) == f\"Stage: '{rel_path}'\"\n        assert str(stage1) == f\"stage: '{rel_path}'\"\n\n        rel_path = os.path.relpath(stage2.path)\n        assert stage2.addressing == f\"{rel_path}:{stage2.name}\"\n        assert repr(stage2) == f\"Stage: '{rel_path}:{stage2.name}'\"\n        assert str(stage2) == f\"stage: '{rel_path}:{stage2.name}'\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_on_no_path_string_repr_test_stage_on_no_path_string_repr.assert_str_p_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_on_no_path_string_repr_test_stage_on_no_path_string_repr.assert_str_p_stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 238, "end_line": 247, "span_ids": ["test_stage_on_no_path_string_repr"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_on_no_path_string_repr(tmp_dir, dvc):\n    s = Stage(dvc)\n    assert s.addressing == \"No path\"\n    assert repr(s) == \"Stage: 'No path'\"\n    assert str(s) == \"stage: 'No path'\"\n\n    p = PipelineStage(dvc, name=\"stage_name\")\n    assert p.addressing == \"No path:stage_name\"\n    assert repr(p) == \"Stage: 'No path:stage_name'\"\n    assert str(p) == \"stage: 'No path:stage_name'\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestWalkInGit.test_branch_TestWalkInGit.test_branch.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_TestWalkInGit.test_branch_TestWalkInGit.test_branch.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 160, "end_line": 186, "span_ids": ["TestWalkInGit.test_branch"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestWalkInGit(AssertWalkEqualMixin, TestGit):\n\n    def test_branch(self):\n        scm = SCM(self._root_dir)\n        scm.add([self.DATA_SUB_DIR])\n        scm.commit(\"add data_dir/data_sub_dir/data_sub\")\n        tree = scm.get_tree(\"master\")\n        self.assertWalkEqual(\n            tree.walk(\".\"),\n            [\n                (self._root_dir, [\"data_dir\"], [\"code.py\"]),\n                (join(self._root_dir, \"data_dir\"), [\"data_sub_dir\"], []),\n                (\n                    join(self._root_dir, \"data_dir\", \"data_sub_dir\"),\n                    [],\n                    [\"data_sub\"],\n                ),\n            ],\n        )\n        self.assertWalkEqual(\n            tree.walk(join(\"data_dir\", \"data_sub_dir\")),\n            [\n                (\n                    join(self._root_dir, \"data_dir\", \"data_sub_dir\"),\n                    [],\n                    [\"data_sub\"],\n                )\n            ],\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_repotree_cache_save_test_repotree_cache_save.for_hash__in_expected_.assert_os_path_exists_cac": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_repotree_cache_save_test_repotree_cache_save.for_hash__in_expected_.assert_os_path_exists_cac", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 206, "end_line": 231, "span_ids": ["test_repotree_cache_save"], "tokens": 279}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repotree_cache_save(tmp_dir, dvc, scm, erepo_dir, local_cloud):\n    with erepo_dir.chdir():\n        erepo_dir.gen({\"dir\": {\"subdir\": {\"foo\": \"foo\"}, \"bar\": \"bar\"}})\n        erepo_dir.dvc_add(\"dir/subdir\", commit=\"subdir\")\n        erepo_dir.scm_add(\"dir\", commit=\"dir\")\n        erepo_dir.add_remote(config=local_cloud.config)\n        erepo_dir.dvc.push()\n\n    # test only cares that either fetch or stream are set so that DVC dirs are\n    # walked.\n    #\n    # for this test, all file objects are being opened() and copied from tree\n    # into dvc.cache, not fetched or streamed from a remote\n    tree = RepoTree(erepo_dir.dvc, stream=True)\n    expected = [\n        tree.get_file_hash(PathInfo(erepo_dir / path)).value\n        for path in (\"dir/bar\", \"dir/subdir/foo\")\n    ]\n\n    cache = dvc.cache.local\n    path_info = PathInfo(erepo_dir / \"dir\")\n    hash_info = cache.tree.get_hash(path_info)\n    cache.save(path_info, tree, hash_info)\n\n    for hash_ in expected:\n        assert os.path.exists(cache.tree.hash_to_path_info(hash_))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_utils.py_from_dvc_import_utils_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_utils.py_from_dvc_import_utils_", "embedding": null, "metadata": {"file_path": "tests/func/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 43, "span_ids": ["test_dict_md5", "imports", "test_file_md5_crlf", "test_boxify"], "tokens": 329}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc import utils\n\n\ndef test_file_md5_crlf(tmp_dir):\n    tmp_dir.gen(\"cr\", b\"a\\nb\\nc\")\n    tmp_dir.gen(\"crlf\", b\"a\\r\\nb\\r\\nc\")\n    assert utils.file_md5(\"cr\")[0] == utils.file_md5(\"crlf\")[0]\n\n\ndef test_dict_md5():\n    d = {\n        \"cmd\": \"python code.py foo file1\",\n        \"locked\": \"true\",\n        \"outs\": [\n            {\n                \"path\": \"file1\",\n                \"metric\": {\"type\": \"raw\"},\n                \"cache\": False,\n                \"md5\": \"acbd18db4cc2f85cedef654fccc4a4d8\",\n            }\n        ],\n        \"deps\": [\n            {\"path\": \"foo\", \"md5\": \"acbd18db4cc2f85cedef654fccc4a4d8\"},\n            {\"path\": \"code.py\", \"md5\": \"d05447644b89960913c7eee5fd776adb\"},\n        ],\n    }\n\n    md5 = \"8b263fa05ede6c3145c164829be694b4\"\n\n    assert md5 == utils.dict_md5(d, exclude=[\"metric\", \"locked\"])\n\n\ndef test_boxify():\n    expected = (\n        \"+-----------------+\\n\"\n        \"|                 |\\n\"\n        \"|     message     |\\n\"\n        \"|                 |\\n\"\n        \"+-----------------+\\n\"\n    )\n\n    assert expected == utils.boxify(\"message\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/ssh.py_ssh_server_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/ssh.py_ssh_server_", "embedding": null, "metadata": {"file_path": "tests/remotes/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 115, "end_line": 145, "span_ids": ["ssh", "ssh_server", "ssh_connection"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef ssh_server(test_config):\n    import mockssh\n\n    test_config.requires(\"ssh\")\n    users = {TEST_SSH_USER: TEST_SSH_KEY_PATH}\n    with mockssh.Server(users) as s:\n        yield s\n\n\n@pytest.fixture\ndef ssh_connection(ssh_server):\n    from dvc.tree.ssh.connection import SSHConnection\n\n    yield SSHConnection(\n        host=ssh_server.host,\n        port=ssh_server.port,\n        username=TEST_SSH_USER,\n        key_filename=TEST_SSH_KEY_PATH,\n    )\n\n\n@pytest.fixture\ndef ssh(ssh_server, monkeypatch):\n    from dvc.tree.ssh import SSHTree\n\n    # NOTE: see http://github.com/iterative/dvc/pull/3501\n    monkeypatch.setattr(SSHTree, \"CAN_TRAVERSE\", False)\n\n    return SSHMocked(SSHMocked.get_url(TEST_SSH_USER, ssh_server.port))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_nx_test_dag.assert_cmd_run_0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_nx_test_dag.assert_cmd_run_0", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_dag.py", "file_name": "test_dag.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["imports", "test_dag"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import networkx as nx\nimport pytest\n\nfrom dvc.cli import parse_args\nfrom dvc.command.dag import CmdDAG, _build, _show_ascii, _show_dot\n\n\n@pytest.mark.parametrize(\"fmt\", [None, \"--dot\"])\ndef test_dag(tmp_dir, dvc, mocker, fmt):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    args = [\"dag\", \"--full\", \"foo.dvc\"]\n    if fmt:\n        args.append(fmt)\n    cli_args = parse_args(args)\n    assert cli_args.func == CmdDAG\n\n    cmd = cli_args.func(cli_args)\n\n    mocker.patch(\"dvc.command.dag._build\", return_value=dvc.graph)\n\n    assert cmd.run() == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_test_build_test_build_full.assert_nx_is_isomorphic_G": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_test_build_test_build_full.assert_nx_is_isomorphic_G", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_dag.py", "file_name": "test_dag.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 80, "span_ids": ["test_build_target_with_outs", "test_build", "test_build_granular_target_with_outs", "test_build_target", "test_build_full"], "tokens": 257}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_build(repo):\n    assert nx.is_isomorphic(_build(repo), repo.graph)\n\n\ndef test_build_target(repo):\n    G = _build(repo, target=\"3\")\n    assert set(G.nodes()) == {\"3\", \"b.dvc\", \"a.dvc\"}\n    assert set(G.edges()) == {(\"3\", \"a.dvc\"), (\"3\", \"b.dvc\")}\n\n\ndef test_build_target_with_outs(repo):\n    G = _build(repo, target=\"3\", outs=True)\n    assert set(G.nodes()) == {\"a\", \"b\", \"h\", \"i\"}\n    assert set(G.edges()) == {\n        (\"i\", \"a\"),\n        (\"i\", \"b\"),\n        (\"h\", \"a\"),\n        (\"h\", \"b\"),\n    }\n\n\ndef test_build_granular_target_with_outs(repo):\n    G = _build(repo, target=\"h\", outs=True)\n    assert set(G.nodes()) == {\"a\", \"b\", \"h\"}\n    assert set(G.edges()) == {\n        (\"h\", \"a\"),\n        (\"h\", \"b\"),\n    }\n\n\ndef test_build_full(repo):\n    G = _build(repo, target=\"3\", full=True)\n    assert nx.is_isomorphic(G, repo.graph)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_test_show_dot_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_test_show_dot_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_dag.py", "file_name": "test_dag.py", "file_type": "text/x-python", "category": "test", "start_line": 125, "end_line": 142, "span_ids": ["test_show_dot"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_dot(repo):\n    assert _show_dot(repo.graph) == (\n        \"strict digraph  {\\n\"\n        \"stage;\\n\"\n        \"stage;\\n\"\n        \"stage;\\n\"\n        \"stage;\\n\"\n        \"stage;\\n\"\n        \"stage;\\n\"\n        \"\\\"stage: '1'\\\" -> \\\"stage: 'a.dvc'\\\";\\n\"\n        \"\\\"stage: '2'\\\" -> \\\"stage: 'b.dvc'\\\";\\n\"\n        \"\\\"stage: '3'\\\" -> \\\"stage: 'a.dvc'\\\";\\n\"\n        \"\\\"stage: '3'\\\" -> \\\"stage: 'b.dvc'\\\";\\n\"\n        \"\\\"stage: '4'\\\" -> \\\"stage: 'a.dvc'\\\";\\n\"\n        \"\\\"stage: '4'\\\" -> \\\"stage: '3'\\\";\\n\"\n        \"}\\n\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_test_metrics_show.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_test_metrics_show.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 98, "end_line": 125, "span_ids": ["test_metrics_show"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show(dvc, mocker):\n    cli_args = parse_args(\n        [\n            \"metrics\",\n            \"show\",\n            \"-R\",\n            \"--all-tags\",\n            \"--all-branches\",\n            \"--all-commits\",\n            \"target1\",\n            \"target2\",\n        ]\n    )\n    assert cli_args.func == CmdMetricsShow\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.metrics.show.show\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        [\"target1\", \"target2\"],\n        recursive=True,\n        all_tags=True,\n        all_branches=True,\n        all_commits=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_precision_test_metrics_diff_precision.assert__show_diff_diff_p": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_precision_test_metrics_diff_precision.assert__show_diff_diff_p", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 132, "end_line": 153, "span_ids": ["test_metrics_diff_precision"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_precision():\n    diff = {\n        \"other.json\": {\n            \"a.b\": {\n                \"old\": 0.1234567,\n                \"new\": 0.765432101234567,\n                \"diff\": 0.641975401234567,\n            }\n        }\n    }\n\n    assert _show_diff(diff) == textwrap.dedent(\n        \"\"\"\\\n        Path        Metric    Old      New      Change\n        other.json  a.b       0.12346  0.76543  0.64198\"\"\"\n    )\n\n    assert _show_diff(diff, precision=10) == textwrap.dedent(\n        \"\"\"\\\n        Path        Metric    Old        New           Change\n        other.json  a.b       0.1234567  0.7654321012  0.6419754012\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_markdown_test_metrics_diff_markdown.assert__show_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_markdown_test_metrics_diff_markdown.assert__show_diff_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 183, "end_line": 201, "span_ids": ["test_metrics_diff_markdown"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_markdown():\n    assert _show_diff(\n        {\n            \"metrics.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6},\n                \"a.d.e\": {\"old\": 3, \"new\": 4, \"diff\": 1},\n                \"a.b.c\": {\"old\": 1, \"new\": 2, \"diff\": 1},\n            }\n        },\n        markdown=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        | Path         | Metric   | Old   | New   | Change   |\n        |--------------|----------|-------|-------|----------|\n        | metrics.yaml | a.b.c    | 1     | 2     | 1        |\n        | metrics.yaml | a.d.e    | 3     | 4     | 1        |\n        | metrics.yaml | x.b      | 5     | 6     | \u2014        |\n        \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_no_path_test_metrics_diff_no_path.assert__show_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_diff_no_path_test_metrics_diff_no_path.assert__show_diff_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 204, "end_line": 220, "span_ids": ["test_metrics_diff_no_path"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_no_path():\n    assert _show_diff(\n        {\n            \"metrics.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6, \"diff\": 1},\n                \"a.d.e\": {\"old\": 3, \"new\": 4, \"diff\": 1},\n                \"a.b.c\": {\"old\": 1, \"new\": 2, \"diff\": 1},\n            }\n        },\n        no_path=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Metric    Old    New    Change\n        a.b.c     1      2      1\n        a.d.e     3      4      1\n        x.b       5      6      1\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_markdown_test_params_diff_markdown.assert__show_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_markdown_test_params_diff_markdown.assert__show_diff_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 137, "end_line": 155, "span_ids": ["test_params_diff_markdown"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_diff_markdown():\n    assert _show_diff(\n        {\n            \"params.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6},\n                \"a.d.e\": {\"old\": None, \"new\": 4},\n                \"a.b.c\": {\"old\": 1, \"new\": None},\n            }\n        },\n        markdown=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        | Path        | Param   | Old   | New   |\n        |-------------|---------|-------|-------|\n        | params.yaml | a.b.c   | 1     | \u2014     |\n        | params.yaml | a.d.e   | \u2014     | 4     |\n        | params.yaml | x.b     | 5     | 6     |\n        \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_no_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_params.py_test_params_diff_no_path_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 156, "end_line": 173, "span_ids": ["test_params_diff_no_path"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_diff_no_path():\n    assert _show_diff(\n        {\n            \"params.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6},\n                \"a.d.e\": {\"old\": 3, \"new\": 4},\n                \"a.b.c\": {\"old\": 1, \"new\": 2},\n            }\n        },\n        no_path=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Param    Old    New\n        a.b.c    1      2\n        a.d.e    3      4\n        x.b      5      6\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_plots.py_test_plots_show_vega_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_plots.py_test_plots_show_vega_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_plots.py", "file_name": "test_plots.py", "file_type": "text/x-python", "category": "test", "start_line": 86, "end_line": 104, "span_ids": ["test_plots_show_vega"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plots_show_vega(dvc, mocker, caplog):\n    cli_args = parse_args(\n        [\n            \"plots\",\n            \"diff\",\n            \"HEAD~10\",\n            \"HEAD~1\",\n            \"--show-vega\",\n            \"--targets\",\n            \"plots.csv\",\n        ]\n    )\n    cmd = cli_args.func(cli_args)\n    mocker.patch(\n        \"dvc.repo.plots.diff.diff\", return_value={\"plots.csv\": \"plothtml\"}\n    )\n    assert cmd.run() == 0\n    assert \"plothtml\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_status.py_json_test_cloud_status.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_status.py_json_test_cloud_status.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 44, "span_ids": ["imports", "test_cloud_status"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\n\nimport pytest\n\nfrom dvc.cli import parse_args\nfrom dvc.command.status import CmdDataStatus\n\n\ndef test_cloud_status(mocker):\n    cli_args = parse_args(\n        [\n            \"status\",\n            \"--cloud\",\n            \"target1\",\n            \"target2\",\n            \"--jobs\",\n            \"2\",\n            \"--remote\",\n            \"remote\",\n            \"--all-branches\",\n            \"--all-tags\",\n            \"--all-commits\",\n            \"--with-deps\",\n            \"--recursive\",\n        ]\n    )\n    assert cli_args.func == CmdDataStatus\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"status\", autospec=True, return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cloud=True,\n        targets=[\"target1\", \"target2\"],\n        jobs=2,\n        remote=\"remote\",\n        all_branches=True,\n        all_tags=True,\n        all_commits=True,\n        with_deps=True,\n        recursive=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_status.py_test_status_show_json_test_status_show_json.assert_caplog_messages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_status.py_test_status_show_json_test_status_show_json.assert_caplog_messages_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 47, "end_line": 57, "span_ids": ["test_status_show_json"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"status\", [{}, {\"a\": \"b\", \"c\": [1, 2, 3]}, [1, 2, 3]])\ndef test_status_show_json(mocker, caplog, status):\n    cli_args = parse_args([\"status\", \"--show-json\"])\n    assert cli_args.func == CmdDataStatus\n\n    cmd = cli_args.func(cli_args)\n\n    mocker.patch.object(cmd.repo, \"status\", autospec=True, return_value=status)\n    caplog.clear()\n    assert cmd.run() == 0\n    assert caplog.messages == [json.dumps(status)]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_status.py_test_status_quiet_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_status.py_test_status_quiet_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 60, "end_line": 76, "span_ids": ["test_status_quiet"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"status, ret\", [({}, 0), ({\"a\": \"b\", \"c\": [1, 2, 3]}, 1), ([1, 2, 3], 1)]\n)\ndef test_status_quiet(mocker, caplog, capsys, status, ret):\n    cli_args = parse_args([\"status\", \"-q\"])\n    assert cli_args.func == CmdDataStatus\n\n    cmd = cli_args.func(cli_args)\n\n    mocker.patch.object(cmd.repo, \"status\", autospec=True, return_value=status)\n    caplog.clear()\n    assert cmd.run() == ret\n    assert not caplog.messages\n    captured = capsys.readouterr()\n    assert not captured.err\n    assert not captured.out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_azure.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_azure.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_azure.py", "file_name": "test_azure.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestAzureDependency._get_cls", "TestAzureDependency"], "tokens": 41}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.azure import AzureDependency\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\nclass TestAzureDependency(TestLocalDependency):\n    def _get_cls(self):\n        return AzureDependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py_test_load_from_pipeline_accumulates_flag_test_load_from_pipeline_accumulates_flag.assert_not_outs_1_use_ca": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py_test_load_from_pipeline_accumulates_flag_test_load_from_pipeline_accumulates_flag.assert_not_outs_1_use_ca", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_load.py", "file_name": "test_load.py", "file_type": "text/x-python", "category": "test", "start_line": 46, "end_line": 63, "span_ids": ["test_load_from_pipeline_accumulates_flag"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_from_pipeline_accumulates_flag(dvc):\n    outs = output.load_from_pipeline(\n        Stage(dvc),\n        [\n            \"file1\",\n            {\"file2\": {\"cache\": False}},\n            {\"file1\": {\"persist\": False}},\n            {\"file2\": {\"persist\": True}},\n        ],\n        \"outs\",\n    )\n    for out in outs:\n        assert isinstance(out, LocalOutput)\n        assert not out.plot and not out.metric\n        assert not out.hash_info\n\n    assert outs[0].use_cache and not outs[0].persist\n    assert not outs[1].use_cache and outs[1].persist", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py_test_load_remote_files_from_pipeline_test_load_from_pipeline_illegal_type.None_1.output_load_from_pipeline": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py_test_load_remote_files_from_pipeline_test_load_from_pipeline_illegal_type.None_1.output_load_from_pipeline", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_load.py", "file_name": "test_load.py", "file_type": "text/x-python", "category": "test", "start_line": 66, "end_line": 89, "span_ids": ["test_load_from_pipeline_error_on_typ", "test_load_remote_files_from_pipeline", "test_load_from_pipeline_illegal_type"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_remote_files_from_pipeline(dvc):\n    stage = Stage(dvc)\n    (out,) = output.load_from_pipeline(\n        stage, [{\"s3://dvc-test/file.txt\": {\"cache\": False}}], typ=\"metrics\"\n    )\n    assert isinstance(out, S3Output)\n    assert not out.plot and out.metric\n    assert not out.persist\n    assert not out.hash_info\n\n\n@pytest.mark.parametrize(\"typ\", [None, \"\", \"illegal\"])\ndef test_load_from_pipeline_error_on_typ(dvc, typ):\n    with pytest.raises(ValueError):\n        output.load_from_pipeline(Stage(dvc), [\"file1\"], typ)\n\n\n@pytest.mark.parametrize(\"key\", [3, \"list\".split()])\ndef test_load_from_pipeline_illegal_type(dvc, key):\n    stage = Stage(dvc)\n    with pytest.raises(ValueError):\n        output.load_from_pipeline(stage, [key], \"outs\")\n    with pytest.raises(ValueError):\n        output.load_from_pipeline(stage, [{\"key\": key}], \"outs\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py_test_plots_load_from_pipeline_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py_test_plots_load_from_pipeline_", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_load.py", "file_name": "test_load.py", "file_type": "text/x-python", "category": "test", "start_line": 90, "end_line": 115, "span_ids": ["test_plots_load_from_pipeline"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plots_load_from_pipeline(dvc):\n    outs = output.load_from_pipeline(\n        Stage(dvc),\n        [\n            \"file1\",\n            {\n                \"file2\": {\n                    \"persist\": True,\n                    \"cache\": False,\n                    \"x\": 3,\n                    \"random\": \"val\",\n                }\n            },\n        ],\n        \"plots\",\n    )\n    assert isinstance(outs[0], LocalOutput)\n    assert outs[0].use_cache\n    assert outs[0].plot is True and not outs[0].metric\n    assert not outs[0].persist\n\n    assert isinstance(outs[1], LocalOutput)\n    assert not outs[1].use_cache\n    assert outs[1].plot == {\"x\": 3} and not outs[1].metric\n    assert outs[1].persist", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_pool.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_pool.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_pool.py", "file_name": "test_pool.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 21, "span_ids": ["imports", "test_doesnt_swallow_errors"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.tree.pool import get_connection\nfrom dvc.tree.ssh.connection import SSHConnection\nfrom tests.remotes.ssh import TEST_SSH_KEY_PATH, TEST_SSH_USER\n\n\ndef test_doesnt_swallow_errors(ssh_server):\n    class MyError(Exception):\n        pass\n\n    with pytest.raises(MyError):\n        with get_connection(\n            SSHConnection,\n            host=ssh_server.host,\n            port=ssh_server.port,\n            username=TEST_SSH_USER,\n            key_filename=TEST_SSH_KEY_PATH,\n        ):\n            raise MyError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_host_override_from_config_test_ssh_host_override_from_config.assert_tree_path_info_hos": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_host_override_from_config_test_ssh_host_override_from_config.assert_tree_path_info_hos", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 53, "end_line": 73, "span_ids": ["test_ssh_host_override_from_config"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config,expected_host\",\n    [\n        ({\"url\": \"ssh://example.com\"}, \"1.2.3.4\"),\n        ({\"url\": \"ssh://not_in_ssh_config.com\"}, \"not_in_ssh_config.com\"),\n    ],\n)\n@patch(\"os.path.exists\", return_value=True)\n@patch(\n    f\"{builtin_module_name}.open\",\n    new_callable=mock_open,\n    read_data=mock_ssh_config,\n)\ndef test_ssh_host_override_from_config(\n    mock_file, mock_exists, dvc, config, expected_host\n):\n    tree = SSHTree(dvc, config)\n\n    mock_exists.assert_called_with(SSHTree.ssh_config_filename())\n    mock_file.assert_called_with(SSHTree.ssh_config_filename())\n    assert tree.path_info.host == expected_host", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_user_test_ssh_user.assert_tree_path_info_use": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_user_test_ssh_user.assert_tree_path_info_use", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 76, "end_line": 101, "span_ids": ["test_ssh_user"], "tokens": 246}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config,expected_user\",\n    [\n        ({\"url\": \"ssh://test1@example.com\"}, \"test1\"),\n        ({\"url\": \"ssh://example.com\", \"user\": \"test2\"}, \"test2\"),\n        ({\"url\": \"ssh://example.com\"}, \"ubuntu\"),\n        ({\"url\": \"ssh://test1@not_in_ssh_config.com\"}, \"test1\"),\n        (\n            {\"url\": \"ssh://test1@not_in_ssh_config.com\", \"user\": \"test2\"},\n            \"test2\",\n        ),\n        ({\"url\": \"ssh://not_in_ssh_config.com\"}, getpass.getuser()),\n    ],\n)\n@patch(\"os.path.exists\", return_value=True)\n@patch(\n    f\"{builtin_module_name}.open\",\n    new_callable=mock_open,\n    read_data=mock_ssh_config,\n)\ndef test_ssh_user(mock_file, mock_exists, dvc, config, expected_user):\n    tree = SSHTree(dvc, config)\n\n    mock_exists.assert_called_with(SSHTree.ssh_config_filename())\n    mock_file.assert_called_with(SSHTree.ssh_config_filename())\n    assert tree.path_info.user == expected_user", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_port_test_ssh_port.assert_tree_path_info_por": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_port_test_ssh_port.assert_tree_path_info_por", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 104, "end_line": 126, "span_ids": ["test_ssh_port"], "tokens": 245}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config,expected_port\",\n    [\n        ({\"url\": \"ssh://example.com:2222\"}, 2222),\n        ({\"url\": \"ssh://example.com\"}, 1234),\n        ({\"url\": \"ssh://example.com\", \"port\": 4321}, 4321),\n        ({\"url\": \"ssh://not_in_ssh_config.com\"}, SSHTree.DEFAULT_PORT),\n        ({\"url\": \"ssh://not_in_ssh_config.com:2222\"}, 2222),\n        ({\"url\": \"ssh://not_in_ssh_config.com:2222\", \"port\": 4321}, 4321),\n    ],\n)\n@patch(\"os.path.exists\", return_value=True)\n@patch(\n    f\"{builtin_module_name}.open\",\n    new_callable=mock_open,\n    read_data=mock_ssh_config,\n)\ndef test_ssh_port(mock_file, mock_exists, dvc, config, expected_port):\n    tree = SSHTree(dvc, config)\n\n    mock_exists.assert_called_with(SSHTree.ssh_config_filename())\n    mock_file.assert_called_with(SSHTree.ssh_config_filename())\n    assert tree.path_info.port == expected_port", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_keyfile_test_ssh_keyfile.assert_tree_keyfile_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_keyfile_test_ssh_keyfile.assert_tree_keyfile_ex", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 129, "end_line": 161, "span_ids": ["test_ssh_keyfile"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config,expected_keyfile\",\n    [\n        (\n            {\"url\": \"ssh://example.com\", \"keyfile\": \"dvc_config.key\"},\n            \"dvc_config.key\",\n        ),\n        (\n            {\"url\": \"ssh://example.com\"},\n            os.path.expanduser(\"~/.ssh/not_default.key\"),\n        ),\n        (\n            {\n                \"url\": \"ssh://not_in_ssh_config.com\",\n                \"keyfile\": \"dvc_config.key\",\n            },\n            \"dvc_config.key\",\n        ),\n        ({\"url\": \"ssh://not_in_ssh_config.com\"}, None),\n    ],\n)\n@patch(\"os.path.exists\", return_value=True)\n@patch(\n    f\"{builtin_module_name}.open\",\n    new_callable=mock_open,\n    read_data=mock_ssh_config,\n)\ndef test_ssh_keyfile(mock_file, mock_exists, dvc, config, expected_keyfile):\n    tree = SSHTree(dvc, config)\n\n    mock_exists.assert_called_with(SSHTree.ssh_config_filename())\n    mock_file.assert_called_with(SSHTree.ssh_config_filename())\n    assert tree.keyfile == expected_keyfile", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_gss_auth_test_ssh_gss_auth.assert_tree_gss_auth_e": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_gss_auth_test_ssh_gss_auth.assert_tree_gss_auth_e", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 164, "end_line": 183, "span_ids": ["test_ssh_gss_auth"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config,expected_gss_auth\",\n    [\n        ({\"url\": \"ssh://example.com\", \"gss_auth\": True}, True),\n        ({\"url\": \"ssh://example.com\", \"gss_auth\": False}, False),\n        ({\"url\": \"ssh://not_in_ssh_config.com\"}, False),\n    ],\n)\n@patch(\"os.path.exists\", return_value=True)\n@patch(\n    f\"{builtin_module_name}.open\",\n    new_callable=mock_open,\n    read_data=mock_ssh_config,\n)\ndef test_ssh_gss_auth(mock_file, mock_exists, dvc, config, expected_gss_auth):\n    tree = SSHTree(dvc, config)\n\n    mock_exists.assert_called_with(SSHTree.ssh_config_filename())\n    mock_file.assert_called_with(SSHTree.ssh_config_filename())\n    assert tree.gss_auth == expected_gss_auth", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_test_hashes_exist_test_hashes_exist.None_2.traverse_assert_called_wi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_test_hashes_exist_test_hashes_exist.None_2.traverse_assert_called_wi", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_base.py", "file_name": "test_base.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 94, "span_ids": ["test_hashes_exist"], "tokens": 400}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@mock.patch.object(CloudCache, \"list_hashes_traverse\")\n@mock.patch.object(CloudCache, \"list_hashes_exists\")\ndef test_hashes_exist(object_exists, traverse, dvc):\n    cache = CloudCache(BaseTree(dvc, {}))\n\n    # remote does not support traverse\n    cache.tree.CAN_TRAVERSE = False\n    with mock.patch.object(\n        cache, \"list_hashes\", return_value=list(range(256))\n    ):\n        hashes = set(range(1000))\n        cache.hashes_exist(hashes)\n        object_exists.assert_called_with(hashes, None, None)\n        traverse.assert_not_called()\n\n    cache.tree.CAN_TRAVERSE = True\n\n    # large remote, small local\n    object_exists.reset_mock()\n    traverse.reset_mock()\n    with mock.patch.object(\n        cache, \"list_hashes\", return_value=list(range(256))\n    ):\n        hashes = list(range(1000))\n        cache.hashes_exist(hashes)\n        # verify that _cache_paths_with_max() short circuits\n        # before returning all 256 remote hashes\n        max_hashes = math.ceil(\n            cache._max_estimation_size(hashes)\n            / pow(16, cache.tree.TRAVERSE_PREFIX_LEN)\n        )\n        assert max_hashes < 256\n        object_exists.assert_called_with(\n            frozenset(range(max_hashes, 1000)), None, None\n        )\n        traverse.assert_not_called()\n\n    # large remote, large local\n    object_exists.reset_mock()\n    traverse.reset_mock()\n    cache.tree.JOBS = 16\n    with mock.patch.object(\n        cache, \"list_hashes\", return_value=list(range(256))\n    ):\n        hashes = list(range(1000000))\n        cache.hashes_exist(hashes)\n        object_exists.assert_not_called()\n        traverse.assert_called_with(\n            256 * pow(16, cache.tree.TRAVERSE_PREFIX_LEN),\n            set(range(256)),\n            None,\n            None,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_test_list_hashes_traverse_test_list_hashes_traverse.list_hashes_assert_called": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_test_list_hashes_traverse_test_list_hashes_traverse.list_hashes_assert_called", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_base.py", "file_name": "test_base.py", "file_type": "text/x-python", "category": "test", "start_line": 97, "end_line": 125, "span_ids": ["test_list_hashes_traverse"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@mock.patch.object(\n    CloudCache, \"list_hashes\", return_value=[],\n)\n@mock.patch.object(\n    CloudCache, \"_path_to_hash\", side_effect=lambda x: x,\n)\ndef test_list_hashes_traverse(_path_to_hash, list_hashes, dvc):\n    cache = CloudCache(BaseTree(dvc, {}))\n    cache.tree.path_info = PathInfo(\"foo\")\n\n    # parallel traverse\n    size = 256 / cache.tree.JOBS * cache.tree.LIST_OBJECT_PAGE_SIZE\n    list(cache.list_hashes_traverse(size, {0}))\n    for i in range(1, 16):\n        list_hashes.assert_any_call(\n            prefix=f\"{i:03x}\", progress_callback=CallableOrNone\n        )\n    for i in range(1, 256):\n        list_hashes.assert_any_call(\n            prefix=f\"{i:02x}\", progress_callback=CallableOrNone\n        )\n\n    # default traverse (small remote)\n    size -= 1\n    list_hashes.reset_mock()\n    list(cache.list_hashes_traverse(size - 1, {0}))\n    list_hashes.assert_called_with(\n        prefix=None, progress_callback=CallableOrNone\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_test_list_hashes_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_test_list_hashes_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_base.py", "file_name": "test_base.py", "file_type": "text/x-python", "category": "test", "start_line": 128, "end_line": 163, "span_ids": ["test_is_dir_hash", "test_list_paths", "test_list_hashes"], "tokens": 246}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_list_hashes(dvc):\n    cache = CloudCache(BaseTree(dvc, {}))\n    cache.tree.path_info = PathInfo(\"foo\")\n\n    with mock.patch.object(\n        cache, \"_list_paths\", return_value=[\"12/3456\", \"bar\"]\n    ):\n        hashes = list(cache.list_hashes())\n        assert hashes == [\"123456\"]\n\n\ndef test_list_paths(dvc):\n    cache = CloudCache(BaseTree(dvc, {}))\n    cache.tree.path_info = PathInfo(\"foo\")\n\n    with mock.patch.object(\n        cache.tree, \"walk_files\", return_value=[]\n    ) as walk_mock:\n        for _ in cache._list_paths():\n            pass\n        walk_mock.assert_called_with(cache.tree.path_info, prefix=False)\n\n        for _ in cache._list_paths(prefix=\"000\"):\n            pass\n        walk_mock.assert_called_with(\n            cache.tree.path_info / \"00\" / \"0\", prefix=True\n        )\n\n\n@pytest.mark.parametrize(\n    \"hash_, result\",\n    [(None, False), (\"\", False), (\"3456.dir\", True), (\"3456\", False)],\n)\ndef test_is_dir_hash(hash_, result):\n    assert BaseTree.is_dir_hash(hash_) == result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_pytest_test_public_auth_method.assert_tree__auth_method_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_pytest_test_public_auth_method.assert_tree__auth_method_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 24, "span_ids": ["test_download_fails_on_error_code", "imports", "test_public_auth_method"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.exceptions import HTTPError\nfrom dvc.tree.http import HTTPTree\n\n\ndef test_download_fails_on_error_code(dvc, http):\n    tree = HTTPTree(dvc, http.config)\n\n    with pytest.raises(HTTPError):\n        tree._download(http / \"missing.txt\", \"missing.txt\")\n\n\ndef test_public_auth_method(dvc):\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n        \"user\": \"\",\n        \"password\": \"\",\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._auth_method() is None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_basic_auth_method_test_basic_auth_method.assert_isinstance_tree__a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_basic_auth_method_test_basic_auth_method.assert_isinstance_tree__a", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 44, "span_ids": ["test_basic_auth_method"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_basic_auth_method(dvc):\n    from requests.auth import HTTPBasicAuth\n\n    user = \"username\"\n    password = \"password\"\n    auth = HTTPBasicAuth(user, password)\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n        \"auth\": \"basic\",\n        \"user\": user,\n        \"password\": password,\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._auth_method() == auth\n    assert isinstance(tree._auth_method(), HTTPBasicAuth)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_local.py_errno_test_status_download_optimization.assert_other_remote_hashe": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_local.py_errno_test_status_download_optimization.assert_other_remote_hashe", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_local.py", "file_name": "test_local.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 34, "span_ids": ["imports", "test_status_download_optimization"], "tokens": 276}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport os\n\nimport pytest\n\nfrom dvc.cache import NamedCache\nfrom dvc.cache.local import LocalCache\nfrom dvc.path_info import PathInfo\nfrom dvc.remote.index import RemoteIndexNoop\nfrom dvc.tree.local import LocalTree\n\n\ndef test_status_download_optimization(mocker, dvc):\n    \"\"\"When comparing the status to pull a remote cache,\n        And the desired files to fetch are already on the local cache,\n        Don't check the existence of the desired files on the remote cache\n    \"\"\"\n    cache = LocalCache(LocalTree(dvc, {}))\n\n    infos = NamedCache()\n    infos.add(\"local\", \"acbd18db4cc2f85cedef654fccc4a4d8\", \"foo\")\n    infos.add(\"local\", \"37b51d194a7513e45b56f6524f2d51f2\", \"bar\")\n\n    local_exists = list(infos[\"local\"])\n    mocker.patch.object(cache, \"hashes_exist\", return_value=local_exists)\n\n    other_remote = mocker.Mock()\n    other_remote.url = \"other_remote\"\n    other_remote.hashes_exist.return_value = []\n    other_remote.index = RemoteIndexNoop()\n\n    other_remote.status(cache, infos, download=True)\n\n    assert other_remote.hashes_exist.call_count == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_local.py_test_is_protected_test_is_protected.if_os_name_nt_and_li.else_.assert_tree_is_protected_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_local.py_test_is_protected_test_is_protected.if_os_name_nt_and_li.else_.assert_tree_is_protected_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_local.py", "file_name": "test_local.py", "file_type": "text/x-python", "category": "test", "start_line": 37, "end_line": 65, "span_ids": ["test_is_protected"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"link_name\", [\"hardlink\", \"symlink\"])\ndef test_is_protected(tmp_dir, dvc, link_name):\n    tree = LocalTree(dvc, {})\n    link_method = getattr(tree, link_name)\n\n    (tmp_dir / \"foo\").write_text(\"foo\")\n\n    foo = PathInfo(tmp_dir / \"foo\")\n    link = PathInfo(tmp_dir / \"link\")\n\n    link_method(foo, link)\n\n    assert not tree.is_protected(foo)\n    assert not tree.is_protected(link)\n\n    tree.protect(foo)\n\n    assert tree.is_protected(foo)\n    assert tree.is_protected(link)\n\n    tree.unprotect(link)\n\n    assert not tree.is_protected(link)\n    if os.name == \"nt\" and link_name == \"hardlink\":\n        # NOTE: NTFS doesn't allow deleting read-only files, which forces us to\n        # set write perms on the link, which propagates to the source.\n        assert not tree.is_protected(foo)\n    else:\n        assert tree.is_protected(foo)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote.py_pytest_test_remote_without_hash_jobs_default.assert_tree_hash_jobs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote.py_pytest_test_remote_without_hash_jobs_default.assert_tree_hash_jobs_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 42, "span_ids": ["test_remote_with_jobs", "imports", "test_remote_without_hash_jobs", "test_remote_with_hash_jobs", "test_remote_without_hash_jobs_default"], "tokens": 315}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.tree import get_cloud_tree\nfrom dvc.tree.gs import GSTree\nfrom dvc.tree.s3 import S3Tree\n\n\ndef test_remote_with_hash_jobs(dvc):\n    dvc.config[\"remote\"][\"with_hash_jobs\"] = {\n        \"url\": \"s3://bucket/name\",\n        \"checksum_jobs\": 100,\n    }\n    dvc.config[\"core\"][\"checksum_jobs\"] = 200\n\n    tree = get_cloud_tree(dvc, name=\"with_hash_jobs\")\n    assert tree.hash_jobs == 100\n\n\ndef test_remote_with_jobs(dvc):\n    dvc.config[\"remote\"][\"with_jobs\"] = {\n        \"url\": \"s3://bucket/name\",\n        \"jobs\": 100,\n    }\n    dvc.config[\"core\"][\"jobs\"] = 200\n\n    tree = get_cloud_tree(dvc, name=\"with_jobs\")\n    assert tree.jobs == 100\n\n\ndef test_remote_without_hash_jobs(dvc):\n    dvc.config[\"remote\"][\"without_hash_jobs\"] = {\"url\": \"s3://bucket/name\"}\n    dvc.config[\"core\"][\"checksum_jobs\"] = 200\n\n    tree = get_cloud_tree(dvc, name=\"without_hash_jobs\")\n    assert tree.hash_jobs == 200\n\n\ndef test_remote_without_hash_jobs_default(dvc):\n    dvc.config[\"remote\"][\"without_hash_jobs\"] = {\"url\": \"s3://bucket/name\"}\n\n    tree = get_cloud_tree(dvc, name=\"without_hash_jobs\")\n    assert tree.hash_jobs == tree.HASH_JOBS", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_isdir_test_isdir.for_expected_path_in_tes.assert_remote_tree_isdir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_isdir_test_isdir.for_expected_path_in_tes.assert_remote_tree_isdir_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 49, "span_ids": ["test_isdir"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", remotes, indirect=True)\ndef test_isdir(remote):\n    test_cases = [\n        (True, \"data\"),\n        (True, \"data/\"),\n        (True, \"data/subdir\"),\n        (True, \"empty_dir\"),\n        (False, \"foo\"),\n        (False, \"data/alice\"),\n        (False, \"data/al\"),\n        (False, \"data/subdir/1\"),\n    ]\n\n    for expected, path in test_cases:\n        assert remote.tree.isdir(remote.tree.path_info / path) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_exists_test_exists.for_expected_path_in_tes.assert_remote_tree_exists": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_exists_test_exists.for_expected_path_in_tes.assert_remote_tree_exists", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 52, "end_line": 69, "span_ids": ["test_exists"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", remotes, indirect=True)\ndef test_exists(remote):\n    test_cases = [\n        (True, \"data\"),\n        (True, \"data/\"),\n        (True, \"data/subdir\"),\n        (True, \"empty_dir\"),\n        (True, \"empty_file\"),\n        (True, \"foo\"),\n        (True, \"data/alice\"),\n        (True, \"data/subdir/1\"),\n        (False, \"data/al\"),\n        (False, \"foo/\"),\n        (True, \"data1.txt\"),\n    ]\n\n    for expected, path in test_cases:\n        assert remote.tree.exists(remote.tree.path_info / path) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_copy_preserve_etag_across_buckets_test_makedirs.assert_tree_isdir_empty_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_copy_preserve_etag_across_buckets_test_makedirs.assert_tree_isdir_empty_d", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 89, "end_line": 115, "span_ids": ["test_copy_preserve_etag_across_buckets", "test_makedirs"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", [pytest.lazy_fixture(\"s3\")], indirect=True)\ndef test_copy_preserve_etag_across_buckets(remote, dvc):\n    s3 = remote.tree.s3\n    s3.Bucket(\"another\").create()\n\n    another = S3Tree(dvc, {\"url\": \"s3://another\", \"region\": \"us-east-1\"})\n\n    from_info = remote.tree.path_info / \"foo\"\n    to_info = another.path_info / \"foo\"\n\n    remote.tree.copy(from_info, to_info)\n\n    from_hash = remote.tree.get_hash(from_info)\n    to_hash = another.get_hash(to_info)\n\n    assert from_hash == to_hash\n\n\n@pytest.mark.parametrize(\"remote\", remotes, indirect=True)\ndef test_makedirs(remote):\n    tree = remote.tree\n    empty_dir = remote.tree.path_info / \"empty_dir\" / \"\"\n    tree.remove(empty_dir)\n    assert not tree.exists(empty_dir)\n    tree.makedirs(empty_dir)\n    assert tree.exists(empty_dir)\n    assert tree.isdir(empty_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_isfile_test_isfile.for_expected_path_in_tes.assert_remote_tree_isfile": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_isfile_test_isfile.for_expected_path_in_tes.assert_remote_tree_isfile", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 118, "end_line": 137, "span_ids": ["test_isfile"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", remotes, indirect=True)\ndef test_isfile(remote):\n    test_cases = [\n        (False, \"empty_dir/\"),\n        (True, \"empty_file\"),\n        (True, \"foo\"),\n        (True, \"data/alice\"),\n        (True, \"data/alpha\"),\n        (True, \"data/subdir/1\"),\n        (True, \"data/subdir/2\"),\n        (True, \"data/subdir/3\"),\n        (False, \"data/subdir/empty_dir/\"),\n        (True, \"data/subdir/empty_file\"),\n        (False, \"something-that-does-not-exist\"),\n        (False, \"data/subdir/empty-file/\"),\n        (False, \"empty_dir\"),\n    ]\n\n    for expected, path in test_cases:\n        assert remote.tree.isfile(remote.tree.path_info / path) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_download_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_download_dir_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 140, "end_line": 159, "span_ids": ["test_download_dir"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", remotes, indirect=True)\ndef test_download_dir(remote, tmpdir):\n    path = str(tmpdir / \"data\")\n    to_info = PathInfo(path)\n    remote.tree.download(remote.tree.path_info / \"data\", to_info)\n    assert os.path.isdir(path)\n    data_dir = tmpdir / \"data\"\n    assert len(list(walk_files(path))) == 7\n    assert (data_dir / \"alice\").read_text(encoding=\"utf-8\") == \"alice\"\n    assert (data_dir / \"alpha\").read_text(encoding=\"utf-8\") == \"alpha\"\n    assert (data_dir / \"subdir-file.txt\").read_text(\n        encoding=\"utf-8\"\n    ) == \"subdir\"\n    assert (data_dir / \"subdir\" / \"1\").read_text(encoding=\"utf-8\") == \"1\"\n    assert (data_dir / \"subdir\" / \"2\").read_text(encoding=\"utf-8\") == \"2\"\n    assert (data_dir / \"subdir\" / \"3\").read_text(encoding=\"utf-8\") == \"3\"\n    assert (data_dir / \"subdir\" / \"empty_file\").read_text(\n        encoding=\"utf-8\"\n    ) == \"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_data.py_from_collections_import_O_test_parse_json.assert_result_expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_data.py_from_collections_import_O_test_parse_json.assert_result_expected", "embedding": null, "metadata": {"file_path": "tests/unit/repo/plots/test_data.py", "file_name": "test_data.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["test_parse_json", "imports"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import OrderedDict\n\nimport pytest\n\nfrom dvc.repo.plots.data import _apply_path, _find_data, _lists\n\n\n@pytest.mark.parametrize(\n    \"path,expected_result\",\n    [\n        (\"$.some.path[*].a\", [{\"a\": 1}, {\"a\": 4}]),\n        (\"$.some.path\", [{\"a\": 1, \"b\": 2, \"c\": 3}, {\"a\": 4, \"b\": 5, \"c\": 6}]),\n    ],\n)\ndef test_parse_json(path, expected_result):\n    value = {\n        \"some\": {\"path\": [{\"a\": 1, \"b\": 2, \"c\": 3}, {\"a\": 4, \"b\": 5, \"c\": 6}]}\n    }\n\n    result = _apply_path(value, path=path)\n\n    assert result == expected_result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_data.py_test_finding_lists_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_data.py_test_finding_lists_", "embedding": null, "metadata": {"file_path": "tests/unit/repo/plots/test_data.py", "file_name": "test_data.py", "file_type": "text/x-python", "category": "test", "start_line": 25, "end_line": 49, "span_ids": ["test_finding_data", "test_finding_lists"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"dictionary, expected_result\",\n    [\n        ({}, []),\n        ({\"x\": [\"a\", \"b\", \"c\"]}, [[\"a\", \"b\", \"c\"]]),\n        (\n            OrderedDict([(\"x\", {\"y\": [\"a\", \"b\"]}), (\"z\", {\"w\": [\"c\", \"d\"]})]),\n            [[\"a\", \"b\"], [\"c\", \"d\"]],\n        ),\n    ],\n)\ndef test_finding_lists(dictionary, expected_result):\n    result = _lists(dictionary)\n\n    assert list(result) == expected_result\n\n\n@pytest.mark.parametrize(\"fields\", [{\"x\"}, set()])\ndef test_finding_data(fields):\n    data = {\"a\": {\"b\": [{\"x\": 2, \"y\": 3}, {\"x\": 1, \"y\": 5}]}}\n\n    result = _find_data(data, fields=fields)\n\n    assert result == [{\"x\": 2, \"y\": 3}, {\"x\": 1, \"y\": 5}]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_walk_onerror_test_walk_onerror.None_3.for___in_tree_walk_foo_.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_walk_onerror_test_walk_onerror.None_3.for___in_tree_walk_foo_.pass", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 63, "span_ids": ["test_walk_onerror"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_onerror(tmp_dir, scm):\n    def onerror(exc):\n        raise exc\n\n    tmp_dir.scm_gen(\n        {\"foo\": \"foo\"}, commit=\"init\",\n    )\n    tree = scm.get_tree(\"HEAD\")\n\n    # path does not exist\n    for _ in tree.walk(\"dir\"):\n        pass\n    with pytest.raises(OSError):\n        for _ in tree.walk(\"dir\", onerror=onerror):\n            pass\n\n    # path is not a directory\n    for _ in tree.walk(\"foo\"):\n        pass\n    with pytest.raises(OSError):\n        for _ in tree.walk(\"foo\", onerror=onerror):\n            pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_os_test_stage_cache.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_os_test_stage_cache.None_11", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 55, "span_ids": ["imports", "test_stage_cache"], "tokens": 453}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\n\ndef test_stage_cache(tmp_dir, dvc, mocker):\n    tmp_dir.gen(\"dep\", \"dep\")\n    tmp_dir.gen(\n        \"script.py\",\n        (\n            'open(\"out\", \"w+\").write(\"out\"); '\n            'open(\"out_no_cache\", \"w+\").write(\"out_no_cache\")'\n        ),\n    )\n    stage = dvc.run(\n        cmd=\"python script.py\",\n        deps=[\"script.py\", \"dep\"],\n        outs=[\"out\"],\n        outs_no_cache=[\"out_no_cache\"],\n        single_stage=True,\n    )\n\n    with dvc.lock, dvc.state:\n        stage.remove(remove_outs=True, force=True)\n\n    assert not (tmp_dir / \"out\").exists()\n    assert not (tmp_dir / \"out_no_cache\").exists()\n    assert not (tmp_dir / \"out.dvc\").exists()\n\n    cache_dir = os.path.join(\n        dvc.stage_cache.cache_dir,\n        \"10\",\n        \"10b45372fdf4ec14d3f779c5b256378d7a12780e4c7f549a44138e492f098bfe\",\n    )\n    cache_file = os.path.join(\n        cache_dir,\n        \"bb32e04c6da96a7192513390acedbe4cd6123f8fe5b0ba5fffe39716fe87f6f4\",\n    )\n\n    assert os.path.isdir(cache_dir)\n    assert os.listdir(cache_dir) == [os.path.basename(cache_file)]\n    assert os.path.isfile(cache_file)\n\n    run_spy = mocker.patch(\"dvc.stage.run.cmd_run\")\n    checkout_spy = mocker.spy(dvc.cache.local, \"checkout\")\n    with dvc.lock, dvc.state:\n        stage.run()\n\n    assert not run_spy.called\n    assert checkout_spy.call_count == 2\n\n    assert (tmp_dir / \"out\").exists()\n    assert (tmp_dir / \"out_no_cache\").exists()\n    assert (tmp_dir / \"out\").read_text() == \"out\"\n    assert (tmp_dir / \"out_no_cache\").read_text() == \"out_no_cache\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_stage_cache_params_test_stage_cache_params.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_stage_cache_params_test_stage_cache_params.None_11", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 56, "end_line": 106, "span_ids": ["test_stage_cache_params"], "tokens": 487}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_cache_params(tmp_dir, dvc, mocker):\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\\nbar: 2\")\n    tmp_dir.gen(\"myparams.yaml\", \"baz: 3\\nqux: 4\")\n    tmp_dir.gen(\n        \"script.py\",\n        (\n            'open(\"out\", \"w+\").write(\"out\"); '\n            'open(\"out_no_cache\", \"w+\").write(\"out_no_cache\")'\n        ),\n    )\n    stage = dvc.run(\n        cmd=\"python script.py\",\n        params=[\"foo,bar\", \"myparams.yaml:baz,qux\"],\n        outs=[\"out\"],\n        outs_no_cache=[\"out_no_cache\"],\n        single_stage=True,\n    )\n\n    with dvc.lock, dvc.state:\n        stage.remove(remove_outs=True, force=True)\n\n    assert not (tmp_dir / \"out\").exists()\n    assert not (tmp_dir / \"out_no_cache\").exists()\n    assert not (tmp_dir / \"out.dvc\").exists()\n\n    cache_dir = os.path.join(\n        dvc.stage_cache.cache_dir,\n        \"65\",\n        \"651d0a5b82e05e48b03acf44954f6a8599760e652a143d517a17d1065eca61a1\",\n    )\n    cache_file = os.path.join(\n        cache_dir,\n        \"2196a5a4dd24c5759437511fcf9d6aa66b259e1dac58e3f212aefd1797a6f114\",\n    )\n\n    assert os.path.isdir(cache_dir)\n    assert os.listdir(cache_dir) == [os.path.basename(cache_file)]\n    assert os.path.isfile(cache_file)\n\n    run_spy = mocker.patch(\"dvc.stage.run.cmd_run\")\n    checkout_spy = mocker.spy(dvc.cache.local, \"checkout\")\n    with dvc.lock, dvc.state:\n        stage.run()\n\n    assert not run_spy.called\n    assert checkout_spy.call_count == 2\n\n    assert (tmp_dir / \"out\").exists()\n    assert (tmp_dir / \"out_no_cache\").exists()\n    assert (tmp_dir / \"out\").read_text() == \"out\"\n    assert (tmp_dir / \"out_no_cache\").read_text() == \"out_no_cache\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_os_lock_data.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_os_lock_data.return._", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["imports", "lock_data", "stage_data"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom copy import deepcopy\nfrom itertools import chain\n\nimport pytest\n\nfrom dvc.dvcfile import PIPELINE_FILE, Dvcfile\nfrom dvc.hash_info import HashInfo\nfrom dvc.stage import PipelineStage, create_stage\nfrom dvc.stage.loader import StageLoader\nfrom dvc.stage.serialize import split_params_deps\n\n\n@pytest.fixture\ndef stage_data():\n    return {\"cmd\": \"command\", \"deps\": [\"foo\"], \"outs\": [\"bar\"]}\n\n\n@pytest.fixture\ndef lock_data():\n    return {\n        \"cmd\": \"command\",\n        \"deps\": [{\"path\": \"foo\", \"md5\": \"foo_checksum\"}],\n        \"outs\": [{\"path\": \"bar\", \"md5\": \"bar_checksum\"}],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_missing_params_section_test_fill_from_lock_missing_params_section.assert_not_params_deps_0_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_missing_params_section_test_fill_from_lock_missing_params_section.assert_not_params_deps_0_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 78, "end_line": 89, "span_ids": ["test_fill_from_lock_missing_params_section"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_missing_params_section(dvc, lock_data):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        PIPELINE_FILE,\n        deps=[\"foo\"],\n        outs=[\"bar\"],\n        params=[\"lorem\", \"lorem.ipsum\", {\"myparams.yaml\": [\"ipsum\"]}],\n    )\n    params_deps = split_params_deps(stage)[0]\n    StageLoader.fill_from_lock(stage, lock_data)\n    assert not params_deps[0].hash_info and not params_deps[1].hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_missing_checksums_test_fill_from_lock_missing_checksums.assert_not_stage_deps_1_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_missing_checksums_test_fill_from_lock_missing_checksums.assert_not_stage_deps_1_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 92, "end_line": 105, "span_ids": ["test_fill_from_lock_missing_checksums"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_missing_checksums(dvc, lock_data):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        PIPELINE_FILE,\n        deps=[\"foo\", \"foo1\"],\n        outs=[\"bar\", \"bar1\"],\n    )\n\n    StageLoader.fill_from_lock(stage, lock_data)\n\n    assert stage.deps[0].hash_info == HashInfo(\"md5\", \"foo_checksum\")\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")\n    assert not stage.deps[1].hash_info and not stage.outs[1].hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_with_missing_sections_test_fill_from_lock_empty_data.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_with_missing_sections_test_fill_from_lock_empty_data.None_1", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 122, "end_line": 146, "span_ids": ["test_fill_from_lock_empty_data", "test_fill_from_lock_with_missing_sections"], "tokens": 252}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_with_missing_sections(dvc, lock_data):\n    stage = create_stage(\n        PipelineStage, dvc, PIPELINE_FILE, deps=[\"foo\"], outs=[\"bar\"]\n    )\n    lock = deepcopy(lock_data)\n    del lock[\"deps\"]\n    StageLoader.fill_from_lock(stage, lock)\n    assert not stage.deps[0].hash_info\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")\n\n    lock = deepcopy(lock_data)\n    del lock[\"outs\"]\n    StageLoader.fill_from_lock(stage, lock)\n    assert stage.deps[0].hash_info == HashInfo(\"md5\", \"foo_checksum\")\n    assert not stage.outs[0].hash_info\n\n\ndef test_fill_from_lock_empty_data(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, PIPELINE_FILE, deps=[\"foo\"], outs=[\"bar\"]\n    )\n    StageLoader.fill_from_lock(stage, None)\n    assert not stage.deps[0].hash_info and not stage.outs[0].hash_info\n    StageLoader.fill_from_lock(stage, {})\n    assert not stage.deps[0].hash_info and not stage.outs[0].hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_changed_command_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_changed_command_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 202, "end_line": 233, "span_ids": ["test_load_stage_mapping", "test_load_changed_command", "test_load_stage_wdir_and_path_correctly"], "tokens": 306}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_changed_command(dvc, stage_data, lock_data):\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data)\n    assert not stage.cmd_changed\n    assert stage.cmd == \"command\"\n\n    lock_data[\"cmd\"] = \"different-command\"\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n    assert stage.cmd_changed\n    assert stage.cmd == \"command\"\n\n\ndef test_load_stage_wdir_and_path_correctly(dvc, stage_data, lock_data):\n    stage_data[\"wdir\"] = \"dir\"\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n\n    assert stage.wdir == os.path.abspath(\"dir\")\n    assert stage.path == os.path.abspath(PIPELINE_FILE)\n\n\ndef test_load_stage_mapping(dvc, stage_data, lock_data):\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    loader = StageLoader(\n        dvcfile, {\"stages\": {\"stage\": stage_data}}, {\"stage\": lock_data}\n    )\n    assert len(loader) == 1\n    assert \"stage\" in loader\n    assert \"stage1\" not in loader\n    assert loader.keys() == {\"stage\"}\n    assert isinstance(loader[\"stage\"], PipelineStage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_os_test_outs_sorted.assert_to_pipeline_file_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_os_test_outs_sorted.assert_to_pipeline_file_s", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 64, "span_ids": ["test_outs_sorted", "imports", "test_wdir", "test_cmd", "to_pipeline_file", "test_deps_sorted"], "tokens": 415}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\nfrom voluptuous import Schema as _Schema\n\nfrom dvc import output\nfrom dvc.dvcfile import PIPELINE_FILE\nfrom dvc.schema import SINGLE_PIPELINE_STAGE_SCHEMA\nfrom dvc.stage import PipelineStage, create_stage\nfrom dvc.stage.serialize import to_pipeline_file as _to_pipeline_file\n\nkwargs = {\"name\": \"something\", \"cmd\": \"command\", \"path\": PIPELINE_FILE}\nSchema = _Schema(SINGLE_PIPELINE_STAGE_SCHEMA)\n\n\ndef to_pipeline_file(stage):\n    \"\"\"Validate schema on each serialization.\"\"\"\n    e = _to_pipeline_file(stage)\n    assert len(Schema(e)) == 1\n    return e\n\n\ndef test_cmd(dvc):\n    stage = create_stage(PipelineStage, dvc, **kwargs)\n    entry = to_pipeline_file(stage)\n    assert entry == {\"something\": {\"cmd\": \"command\"}}\n\n\ndef test_wdir(dvc):\n    stage = create_stage(PipelineStage, dvc, **kwargs)\n    assert stage.PARAM_WDIR not in to_pipeline_file(stage)[\"something\"]\n\n    stage.wdir = os.curdir\n    assert stage.PARAM_WDIR not in to_pipeline_file(stage)[\"something\"]\n\n    stage.wdir = \"some-dir\"\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_WDIR] == \"some-dir\"\n\n\ndef test_deps_sorted(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, deps=[\"a\", \"quick\", \"lazy\", \"fox\"], **kwargs\n    )\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_DEPS] == [\n        \"a\",\n        \"fox\",\n        \"lazy\",\n        \"quick\",\n    ]\n\n\ndef test_outs_sorted(dvc):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        outs=[\"too\", \"many\", \"outs\"],\n        deps=[\"foo\"],\n        **kwargs,\n    )\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_OUTS] == [\n        \"many\",\n        \"outs\",\n        \"too\",\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_params_sorted_test_params_sorted.assert_to_pipeline_file_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_params_sorted_test_params_sorted.assert_to_pipeline_file_s", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 67, "end_line": 82, "span_ids": ["test_params_sorted"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_sorted(dvc):\n    params = [\n        \"lorem\",\n        \"ipsum\",\n        {\"custom.yaml\": [\"wxyz\", \"pqrs\", \"baz\"]},\n        {\"params.yaml\": [\"barr\"]},\n    ]\n    stage = create_stage(\n        PipelineStage, dvc, outs=[\"bar\"], deps=[\"foo\"], params=params, **kwargs\n    )\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_PARAMS] == [\n        \"barr\",\n        \"ipsum\",\n        \"lorem\",\n        {\"custom.yaml\": [\"baz\", \"pqrs\", \"wxyz\"]},\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_params_file_sorted_test_params_file_sorted.assert_to_pipeline_file_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_params_file_sorted_test_params_file_sorted.assert_to_pipeline_file_s", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 85, "end_line": 100, "span_ids": ["test_params_file_sorted"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_file_sorted(dvc):\n    params = [\n        \"lorem\",\n        \"ipsum\",\n        {\"custom.yaml\": [\"wxyz\", \"pqrs\", \"baz\"]},\n        {\"a-file-of-params.yaml\": [\"barr\"]},\n    ]\n    stage = create_stage(\n        PipelineStage, dvc, outs=[\"bar\"], deps=[\"foo\"], params=params, **kwargs\n    )\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_PARAMS] == [\n        \"ipsum\",\n        \"lorem\",\n        {\"a-file-of-params.yaml\": [\"barr\"]},\n        {\"custom.yaml\": [\"baz\", \"pqrs\", \"wxyz\"]},\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_outs_and_outs_flags_are_sorted_test_outs_and_outs_flags_are_sorted.assert_list_serialized_ou": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_outs_and_outs_flags_are_sorted_test_outs_and_outs_flags_are_sorted.assert_list_serialized_ou", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 103, "end_line": 123, "span_ids": ["test_outs_and_outs_flags_are_sorted"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"typ, extra\",\n    [(\"plots\", {\"plot\": True}), (\"metrics\", {\"metric\": True}), (\"outs\", {})],\n)\ndef test_outs_and_outs_flags_are_sorted(dvc, typ, extra):\n    stage = create_stage(PipelineStage, dvc, deps=[\"input\"], **kwargs)\n    stage.outs += output.loads_from(stage, [\"barr\"], use_cache=False, **extra)\n    stage.outs += output.loads_from(\n        stage, [\"foobar\"], use_cache=False, persist=True, **extra\n    )\n    stage.outs += output.loads_from(stage, [\"foo\"], persist=True, **extra)\n    stage.outs += output.loads_from(stage, [\"bar\"], **extra)\n\n    serialized_outs = to_pipeline_file(stage)[\"something\"][typ]\n    assert serialized_outs == [\n        \"bar\",\n        {\"barr\": {\"cache\": False}},\n        {\"foo\": {\"persist\": True}},\n        {\"foobar\": {\"cache\": False, \"persist\": True}},\n    ]\n    assert list(serialized_outs[3][\"foobar\"].keys()) == [\"cache\", \"persist\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_plot_props_test_always_changed.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_plot_props_test_always_changed.None_1", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 126, "end_line": 158, "span_ids": ["test_always_changed", "test_plot_props", "test_frozen"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_props(dvc):\n    props = {\"x\": \"1\"}\n    stage = create_stage(PipelineStage, dvc, plots=[\"plot_file\"], **kwargs)\n    stage.outs[0].plot = props\n\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_PLOTS] == [\n        {\"plot_file\": props}\n    ]\n\n\ndef test_frozen(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, outs=[\"output\"], deps=[\"input\"], **kwargs\n    )\n    assert stage.PARAM_FROZEN not in to_pipeline_file(stage)[\"something\"]\n\n    stage = create_stage(PipelineStage, dvc, **kwargs, frozen=True)\n    assert to_pipeline_file(stage)[\"something\"][stage.PARAM_FROZEN] is True\n\n\ndef test_always_changed(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, outs=[\"output\"], deps=[\"input\"], **kwargs\n    )\n    assert (\n        stage.PARAM_ALWAYS_CHANGED not in to_pipeline_file(stage)[\"something\"]\n    )\n\n    stage = create_stage(PipelineStage, dvc, **kwargs, always_changed=True)\n    assert (\n        to_pipeline_file(stage)[\"something\"][stage.PARAM_ALWAYS_CHANGED]\n        is True\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_order_test_order.assert_list_to_pipeline_f": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_order_test_order.assert_list_to_pipeline_f", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 161, "end_line": 180, "span_ids": ["test_order"], "tokens": 111}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_order(dvc):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        outs=[\"output\"],\n        deps=[\"input\"],\n        **kwargs,\n        always_changed=True,\n        frozen=True,\n    )\n    # `create_stage` checks for existence of `wdir`\n    stage.wdir = \"some-dir\"\n    assert list(to_pipeline_file(stage)[\"something\"].keys()) == [\n        \"cmd\",\n        \"wdir\",\n        \"deps\",\n        \"outs\",\n        \"frozen\",\n        \"always_changed\",\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_order_deps_outs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_file.py_test_order_deps_outs_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_file.py", "file_name": "test_serialize_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 183, "end_line": 197, "span_ids": ["test_order_deps_outs"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"typ\", [\"outs\", \"metrics\", \"plots\", \"params\", \"deps\", None]\n)\ndef test_order_deps_outs(dvc, typ):\n    all_types = [\"deps\", \"params\", \"outs\", \"metrics\", \"plots\"]\n    all_types = [item for item in all_types if item != typ]\n    extra = {key: [f\"foo-{i}\"] for i, key in enumerate(all_types)}\n\n    stage = create_stage(PipelineStage, dvc, **kwargs, **extra)\n    assert typ not in to_pipeline_file(stage)[\"something\"]\n    assert (\n        list(to_pipeline_file(stage)[\"something\"].keys())\n        == [\"cmd\"] + all_types\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_from_collections_import_O_test_lock_deps.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_from_collections_import_O_test_lock_deps.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["to_single_stage_lockfile", "imports", "test_lock", "test_lock_deps"], "tokens": 308}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import OrderedDict\n\nimport pytest\nfrom voluptuous import Schema as _Schema\n\nfrom dvc.dvcfile import PIPELINE_FILE\nfrom dvc.hash_info import HashInfo\nfrom dvc.schema import LOCK_FILE_STAGE_SCHEMA, LOCKFILE_SCHEMA\nfrom dvc.stage import PipelineStage, create_stage\nfrom dvc.stage.serialize import DEFAULT_PARAMS_FILE, to_lockfile\nfrom dvc.stage.serialize import (\n    to_single_stage_lockfile as _to_single_stage_lockfile,\n)\nfrom dvc.stage.utils import split_params_deps\n\nkwargs = {\"name\": \"something\", \"cmd\": \"command\", \"path\": PIPELINE_FILE}\nSchema = _Schema(LOCK_FILE_STAGE_SCHEMA)\n\n\ndef to_single_stage_lockfile(stage):\n    \"\"\"Validate schema on each serialization.\"\"\"\n    e = _to_single_stage_lockfile(stage)\n    assert Schema(e)\n    return e\n\n\ndef test_lock(dvc):\n    stage = create_stage(PipelineStage, dvc, **kwargs)\n    assert to_single_stage_lockfile(stage) == {\"cmd\": \"command\"}\n\n\ndef test_lock_deps(dvc):\n    stage = create_stage(PipelineStage, dvc, deps=[\"input\"], **kwargs)\n    stage.deps[0].hash_info = HashInfo(\"md5\", \"md-five\")\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\"deps\", [OrderedDict([(\"path\", \"input\"), (\"md5\", \"md-five\")])]),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_deps_order_test_lock_deps_order.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_deps_order_test_lock_deps_order.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 43, "end_line": 60, "span_ids": ["test_lock_deps_order"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_lock_deps_order(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, deps=[\"input1\", \"input0\"], **kwargs\n    )\n    stage.deps[0].hash_info = HashInfo(\"md5\", \"md-one1\")\n    stage.deps[1].hash_info = HashInfo(\"md5\", \"md-zer0\")\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\n                \"deps\",\n                [\n                    OrderedDict([(\"path\", \"input0\"), (\"md5\", \"md-zer0\")]),\n                    OrderedDict([(\"path\", \"input1\"), (\"md5\", \"md-one1\")]),\n                ],\n            ),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_params_test_lock_params.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_params_test_lock_params.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 63, "end_line": 72, "span_ids": ["test_lock_params"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_lock_params(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, params=[\"lorem.ipsum\", \"abc\"], **kwargs\n    )\n    stage.deps[0].hash_info = HashInfo(\n        \"params\", {\"lorem.ipsum\": {\"lorem1\": 1, \"lorem2\": 2}, \"abc\": 3}\n    )\n    assert to_single_stage_lockfile(stage)[\"params\"][\n        DEFAULT_PARAMS_FILE\n    ] == OrderedDict([(\"abc\", 3), (\"lorem.ipsum\", {\"lorem1\": 1, \"lorem2\": 2})])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_params_file_sorted_test_lock_params_file_sorted.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_params_file_sorted_test_lock_params_file_sorted.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 75, "end_line": 113, "span_ids": ["test_lock_params_file_sorted"], "tokens": 329}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_lock_params_file_sorted(dvc):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        params=[\n            \"lorem.ipsum\",\n            \"abc\",\n            {\"myparams.yaml\": [\"foo\", \"foobar\"]},\n            {\"a-params-file.yaml\": [\"bar\", \"barr\"]},\n        ],\n        **kwargs\n    )\n    stage.deps[0].hash_info = HashInfo(\n        \"params\", {\"lorem.ipsum\": {\"lorem1\": 1, \"lorem2\": 2}, \"abc\": 3}\n    )\n    stage.deps[1].hash_info = HashInfo(\n        \"params\", {\"foo\": [\"f\", \"o\", \"o\"], \"foobar\": \"foobar\"}\n    )\n    stage.deps[2].hash_info = HashInfo(\n        \"params\", {\"bar\": [\"b\", \"a\", \"r\"], \"barr\": \"barr\"}\n    )\n    assert to_single_stage_lockfile(stage)[\"params\"] == OrderedDict(\n        [\n            (\n                DEFAULT_PARAMS_FILE,\n                OrderedDict(\n                    [(\"abc\", 3), (\"lorem.ipsum\", {\"lorem1\": 1, \"lorem2\": 2})]\n                ),\n            ),\n            (\n                \"a-params-file.yaml\",\n                OrderedDict([(\"bar\", [\"b\", \"a\", \"r\"]), (\"barr\", \"barr\")]),\n            ),\n            (\n                \"myparams.yaml\",\n                OrderedDict([(\"foo\", [\"f\", \"o\", \"o\"]), (\"foobar\", \"foobar\")]),\n            ),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_params_no_values_filled_test_lock_outs.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_params_no_values_filled_test_lock_outs.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 116, "end_line": 132, "span_ids": ["test_lock_outs", "test_lock_params_no_values_filled"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_lock_params_no_values_filled(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, params=[\"lorem.ipsum\", \"abc\"], **kwargs\n    )\n    assert to_single_stage_lockfile(stage) == {\"cmd\": \"command\"}\n\n\n@pytest.mark.parametrize(\"typ\", [\"plots\", \"metrics\", \"outs\"])\ndef test_lock_outs(dvc, typ):\n    stage = create_stage(PipelineStage, dvc, **{typ: [\"input\"]}, **kwargs)\n    stage.outs[0].hash_info = HashInfo(\"md5\", \"md-five\")\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\"outs\", [OrderedDict([(\"path\", \"input\"), (\"md5\", \"md-five\")])]),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_outs_order_test_lock_outs_order.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_outs_order_test_lock_outs_order.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 135, "end_line": 153, "span_ids": ["test_lock_outs_order"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"typ\", [\"plots\", \"metrics\", \"outs\"])\ndef test_lock_outs_order(dvc, typ):\n    stage = create_stage(\n        PipelineStage, dvc, **{typ: [\"input1\", \"input0\"]}, **kwargs\n    )\n    stage.outs[0].hash_info = HashInfo(\"md5\", \"md-one1\")\n    stage.outs[1].hash_info = HashInfo(\"md5\", \"md-zer0\")\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\n                \"outs\",\n                [\n                    OrderedDict([(\"path\", \"input0\"), (\"md5\", \"md-zer0\")]),\n                    OrderedDict([(\"path\", \"input1\"), (\"md5\", \"md-one1\")]),\n                ],\n            ),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_order_test_order.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_order_test_order.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 176, "end_line": 198, "span_ids": ["test_order"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_order(dvc):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        deps=[\"input\"],\n        outs=[\"output\"],\n        params=[\"foo-param\"],\n        **kwargs\n    )\n    params, deps = split_params_deps(stage)\n\n    deps[0].hash_info = HashInfo(\"md5\", \"md-five\")\n    params[0].hash_info = HashInfo(\"params\", {\"foo-param\": \"value\"})\n    stage.outs[0].hash_info = HashInfo(\"md5\", \"md5-output\")\n\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\"deps\", [{\"path\": \"input\", \"md5\": \"md-five\"}]),\n            (\"params\", {\"params.yaml\": {\"foo-param\": \"value\"}}),\n            (\"outs\", [{\"path\": \"output\", \"md5\": \"md5-output\"}]),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_to_lockfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_to_lockfile_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 201, "end_line": 215, "span_ids": ["test_to_lockfile"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_to_lockfile(dvc):\n    stage = create_stage(PipelineStage, dvc, deps=[\"input\"], **kwargs)\n    stage.deps[0].hash_info = HashInfo(\"md5\", \"md-five\")\n    entry = to_lockfile(stage)\n    assert len(entry) == 1\n    _Schema(LOCKFILE_SCHEMA)(entry)\n    assert entry == {\n        \"something\": OrderedDict(\n            [\n                (\"cmd\", \"command\"),\n                (\"deps\", [{\"path\": \"input\", \"md5\": \"md-five\"}]),\n            ]\n        )\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_os_test_path_conversion.assert_stage_dumpd_wdi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_os_test_path_conversion.assert_stage_dumpd_wdi", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 56, "span_ids": ["imports", "test_path_conversion", "test_wdir_default_ignored", "test_meta_ignored", "test_wdir_non_default_is_not_ignored", "test_stage_checksum"], "tokens": 454}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport signal\nimport subprocess\nimport threading\n\nimport mock\nimport pytest\n\nfrom dvc.dependency.repo import RepoDependency\nfrom dvc.stage import Stage\nfrom dvc.stage.exceptions import StageUpdateError\n\nTEST_STAGE_DICT = {\n    \"md5\": \"123456\",\n    \"cmd\": \"mycmd\",\n    \"outs\": [{\"path\": \"a\", \"md5\": \"123456789\"}],\n    \"deps\": [{\"path\": \"b\", \"md5\": \"987654321\"}],\n}\n\n\ndef test_stage_checksum():\n    stage = Stage(None, \"path\", cmd=\"mycmd\")\n\n    with mock.patch.object(stage, \"dumpd\", return_value=TEST_STAGE_DICT):\n        assert stage.compute_md5() == \"e9521a22111493406ea64a88cda63e0b\"\n\n\ndef test_wdir_default_ignored():\n    stage = Stage(None, \"path\", cmd=\"mycmd\")\n    d = dict(TEST_STAGE_DICT, wdir=\".\")\n\n    with mock.patch.object(stage, \"dumpd\", return_value=d):\n        assert stage.compute_md5() == \"e9521a22111493406ea64a88cda63e0b\"\n\n\ndef test_wdir_non_default_is_not_ignored():\n    stage = Stage(None, \"path\", cmd=\"mycmd\")\n    d = dict(TEST_STAGE_DICT, wdir=\"..\")\n\n    with mock.patch.object(stage, \"dumpd\", return_value=d):\n        assert stage.compute_md5() == \"2ceba15e87f6848aa756502c1e6d24e9\"\n\n\ndef test_meta_ignored():\n    stage = Stage(None, \"path\", cmd=\"mycmd\")\n    d = dict(TEST_STAGE_DICT, meta={\"author\": \"Suor\"})\n\n    with mock.patch.object(stage, \"dumpd\", return_value=d):\n        assert stage.compute_md5() == \"e9521a22111493406ea64a88cda63e0b\"\n\n\ndef test_path_conversion(dvc):\n    stage = Stage(dvc, \"path\")\n\n    stage.wdir = os.path.join(\"..\", \"..\")\n    assert stage.dumpd()[\"wdir\"] == \"../..\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_test_stage_update_test_stage_update.with_pytest_raises_StageU.stage_update_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_test_stage_update_test_stage_update.with_pytest_raises_StageU.stage_update_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 59, "end_line": 75, "span_ids": ["test_stage_update"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_update(mocker):\n    dep = RepoDependency({\"url\": \"example.com\"}, None, \"dep_path\")\n    mocker.patch.object(dep, \"update\", return_value=None)\n\n    stage = Stage(None, \"path\", deps=[dep])\n    reproduce = mocker.patch.object(stage, \"reproduce\")\n    is_repo_import = mocker.patch(\n        __name__ + \".Stage.is_repo_import\", new_callable=mocker.PropertyMock\n    )\n\n    is_repo_import.return_value = True\n    stage.update()\n    assert reproduce.called_once_with()\n\n    is_repo_import.return_value = False\n    with pytest.raises(StageUpdateError):\n        stage.update()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_utils.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_utils.py_os_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 21, "span_ids": ["imports", "test_resolve_paths"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.stage.utils import resolve_paths\n\n\ndef test_resolve_paths():\n    p = os.path.join(\"dir\", \"subdir\")\n    file_path = os.path.join(p, \"dvc.yaml\")\n\n    path, wdir = resolve_paths(path=file_path, wdir=\"dir\")\n    assert path == os.path.abspath(file_path)\n    assert wdir == os.path.abspath(os.path.join(p, \"dir\"))\n\n    path, wdir = resolve_paths(path=file_path)\n    assert path == os.path.abspath(file_path)\n    assert wdir == os.path.abspath(p)\n\n    path, wdir = resolve_paths(path=file_path, wdir=\"../../some-dir\")\n    assert path == os.path.abspath(file_path)\n    assert wdir == os.path.abspath(\"some-dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dvcfile.py_pytest_test_stage_load_on_invalid_data.None_1.assert_dvcfile_validate_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dvcfile.py_pytest_test_stage_load_on_invalid_data.None_1.assert_dvcfile_validate_d", "embedding": null, "metadata": {"file_path": "tests/unit/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 62, "span_ids": ["test_pipelines_file", "imports", "test_pipelines_single_stage_file", "test_stage_load_on_invalid_data", "test_stage_load_on_not_existing_file"], "tokens": 429}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.dvcfile import (\n    PIPELINE_FILE,\n    PIPELINE_LOCK,\n    Dvcfile,\n    PipelineFile,\n    SingleStageFile,\n)\nfrom dvc.stage import PipelineStage\nfrom dvc.stage.exceptions import (\n    StageFileDoesNotExistError,\n    StageFileFormatError,\n    StageFileIsNotDvcFileError,\n)\nfrom dvc.utils.fs import remove\nfrom dvc.utils.serialize import dump_yaml\n\n\n@pytest.mark.parametrize(\n    \"path\",\n    [\n        \"pipelines.yaml\",\n        \"pipelines.yml\",\n        \"custom-pipelines.yml\",\n        \"custom-pipelines.yaml\",\n        \"../models/pipelines.yml\",\n    ],\n)\ndef test_pipelines_file(path):\n    file_obj = Dvcfile(object(), path)\n    assert isinstance(file_obj, PipelineFile)\n\n\n@pytest.mark.parametrize(\n    \"path\", [\"Dvcfile\", \"stage.dvc\", \"../models/stage.dvc\"]\n)\ndef test_pipelines_single_stage_file(path):\n    file_obj = Dvcfile(object(), path)\n    assert isinstance(file_obj, SingleStageFile)\n\n\n@pytest.mark.parametrize(\"file\", [\"stage.dvc\", \"dvc.yaml\"])\ndef test_stage_load_on_not_existing_file(tmp_dir, dvc, file):\n    dvcfile = Dvcfile(dvc, file)\n    assert not dvcfile.exists()\n    with pytest.raises(StageFileDoesNotExistError):\n        assert dvcfile.stages.values()\n    (tmp_dir / file).mkdir()\n    with pytest.raises(StageFileIsNotDvcFileError):\n        assert dvcfile.stages.values()\n\n\n@pytest.mark.parametrize(\"file\", [\"stage.dvc\", \"dvc.yaml\"])\ndef test_stage_load_on_invalid_data(tmp_dir, dvc, file):\n    data = {\"is_this_a_valid_dvcfile\": False}\n    dump_yaml(file, data)\n    dvcfile = Dvcfile(dvc, file)\n    with pytest.raises(StageFileFormatError):\n        assert dvcfile.stages\n    with pytest.raises(StageFileFormatError):\n        assert dvcfile.validate(data, file)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dvcfile.py_test_dump_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dvcfile.py_test_dump_stage_", "embedding": null, "metadata": {"file_path": "tests/unit/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 65, "end_line": 86, "span_ids": ["test_dump_stage"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dump_stage(tmp_dir, dvc):\n    stage = PipelineStage(\n        dvc, cmd=\"command\", name=\"stage_name\", path=\"dvc.yaml\"\n    )\n    dvcfile = Dvcfile(dvc, \"dvc.yaml\")\n\n    dvcfile.dump(stage, update_lock=False, update_pipeline=False)\n    assert not (tmp_dir / PIPELINE_FILE).exists()\n    assert not (tmp_dir / PIPELINE_LOCK).exists()\n\n    dvcfile.dump(stage, update_pipeline=False)\n    assert not (tmp_dir / PIPELINE_FILE).exists()\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    assert dvcfile._lockfile.load()\n\n    remove(tmp_dir / PIPELINE_LOCK)\n\n    dvcfile.dump(stage)\n    assert (tmp_dir / PIPELINE_FILE).exists()\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    assert list(dvcfile.stages.values()) == [stage]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_run.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_run.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/test_run.py", "file_name": "test_run.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 37, "span_ids": ["imports", "test_parse_params", "test_valid_stage_names", "test_invalid_stage_names"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.repo.run import is_valid_name, parse_params\n\n\ndef test_parse_params():\n    assert parse_params(\n        [\n            \"param1\",\n            \"file1:param1,param2\",\n            \"file2:param2\",\n            \"file1:param2,param3,\",\n            \"param1,param2\",\n            \"param3,\",\n            \"file3:\",\n        ]\n    ) == [\n        \"param1\",\n        {\"file1\": [\"param1\", \"param2\"]},\n        {\"file2\": [\"param2\"]},\n        {\"file1\": [\"param2\", \"param3\"]},\n        \"param1\",\n        \"param2\",\n        \"param3\",\n        {\"file3\": []},\n    ]\n\n\n@pytest.mark.parametrize(\"name\", [\"copy_name\", \"copy-name\", \"copyName\", \"12\"])\ndef test_valid_stage_names(name):\n    assert is_valid_name(name)\n\n\n@pytest.mark.parametrize(\"name\", [\"copy$name\", \"copy-name?\", \"copy-name@v1\"])\ndef test_invalid_stage_names(name):\n    assert not is_valid_name(name)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py_get_main_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py_get_main_parser_", "embedding": null, "metadata": {"file_path": "dvc/cli.py", "file_name": "cli.py", "file_type": "text/x-python", "category": "implementation", "start_line": 160, "end_line": 231, "span_ids": ["get_main_parser", "parse_args"], "tokens": 413}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def get_main_parser():\n    parent_parser = get_parent_parser()\n\n    # Main parser\n    desc = \"Data Version Control\"\n    parser = DvcParser(\n        prog=\"dvc\",\n        description=desc,\n        parents=[parent_parser],\n        formatter_class=argparse.RawTextHelpFormatter,\n        add_help=False,\n    )\n\n    # NOTE: We are doing this to capitalize help message.\n    # Unfortunately, there is no easier and clearer way to do it,\n    # as adding this argument in get_parent_parser() either in\n    # log_level_group or on parent_parser itself will cause unexpected error.\n    parser.add_argument(\n        \"-h\",\n        \"--help\",\n        action=\"help\",\n        default=argparse.SUPPRESS,\n        help=\"Show this help message and exit.\",\n    )\n\n    # NOTE: On some python versions action='version' prints to stderr\n    # instead of stdout https://bugs.python.org/issue18920\n    parser.add_argument(\n        \"-V\",\n        \"--version\",\n        action=VersionAction,\n        nargs=0,\n        help=\"Show program's version.\",\n    )\n\n    parser.add_argument(\n        \"--cd\",\n        default=os.path.curdir,\n        metavar=\"<path>\",\n        help=\"Change to directory before executing.\",\n        type=str,\n    )\n\n    # Sub commands\n    subparsers = parser.add_subparsers(\n        title=\"Available Commands\",\n        metavar=\"COMMAND\",\n        dest=\"cmd\",\n        help=\"Use `dvc COMMAND --help` for command-specific help.\",\n    )\n\n    fix_subparsers(subparsers)\n\n    for cmd in COMMANDS:\n        cmd.add_parser(subparsers, parent_parser)\n\n    return parser\n\n\ndef parse_args(argv=None):\n    \"\"\"Parses CLI arguments.\n\n    Args:\n        argv: optional list of arguments to parse. sys.argv is used by default.\n\n    Raises:\n        dvc.exceptions.DvcParserError: raised for argument parsing errors.\n    \"\"\"\n    parser = get_main_parser()\n    args = parser.parse_args(argv)\n    return args", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/completion.py_argparse_CmdCompletion.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/completion.py_argparse_CmdCompletion.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/completion.py", "file_name": "completion.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 37, "span_ids": ["imports", "CmdCompletion.run", "CmdCompletion"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nimport shtab\n\nfrom dvc.command.base import CmdBaseNoRepo, append_doc_link\n\nlogger = logging.getLogger(__name__)\nFILE = shtab.FILE\nDIR = shtab.DIRECTORY\nDVC_FILE = {\n    \"bash\": \"_dvc_compgen_DVCFiles\",\n    \"zsh\": \"_files -g '(*?.dvc|Dvcfile|dvc.yaml)'\",\n}\nPREAMBLE = {\n    \"bash\": \"\"\"\n# $1=COMP_WORDS[1]\n_dvc_compgen_DVCFiles() {\n  compgen -d -S '/' -- $1  # recurse into subdirs\n  compgen -f -X '!*?.dvc' -- $1\n  compgen -f -X '!*Dvcfile' -- $1\n  compgen -f -X '!*dvc.yaml' -- $1\n}\n\"\"\",\n    \"zsh\": \"\",\n}\n\n\nclass CmdCompletion(CmdBaseNoRepo):\n    def run(self):\n        from dvc.cli import get_main_parser\n\n        parser = get_main_parser()\n        shell = self.args.shell\n        script = shtab.complete(parser, shell=shell, preamble=PREAMBLE)\n        print(script)\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/completion.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/completion.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/completion.py", "file_name": "completion.py", "file_type": "text/x-python", "category": "implementation", "start_line": 51, "end_line": 69, "span_ids": ["add_parser"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    COMPLETION_HELP = \"Generate shell tab completion.\"\n    COMPLETION_DESCRIPTION = \"Prints out shell tab completion scripts.\"\n    completion_parser = subparsers.add_parser(\n        \"completion\",\n        parents=[parent_parser],\n        description=append_doc_link(COMPLETION_DESCRIPTION, \"completion\"),\n        help=COMPLETION_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    completion_parser.add_argument(\n        \"-s\",\n        \"--shell\",\n        help=\"Shell syntax for completions.\",\n        default=\"bash\",\n        choices=[\"bash\", \"zsh\"],\n    )\n    completion_parser.set_defaults(func=CmdCompletion)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/daemon.py_from_dvc_command_import_c_CmdDaemonAnalytics.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/daemon.py_from_dvc_command_import_c_CmdDaemonAnalytics.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/daemon.py", "file_name": "daemon.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 34, "span_ids": ["CmdDaemonAnalytics.run", "CmdDaemonBase", "imports", "CmdDaemonUpdater.run", "CmdDaemonAnalytics", "CmdDaemonUpdater"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.command import completion\nfrom dvc.command.base import CmdBaseNoRepo, fix_subparsers\n\n\nclass CmdDaemonBase(CmdBaseNoRepo):\n    pass\n\n\nclass CmdDaemonUpdater(CmdDaemonBase):\n    def run(self):\n        import os\n\n        from dvc.config import Config\n        from dvc.repo import Repo\n        from dvc.updater import Updater\n\n        root_dir = Repo.find_root()\n        dvc_dir = os.path.join(root_dir, Repo.DVC_DIR)\n        tmp_dir = os.path.join(dvc_dir, \"tmp\")\n        config = Config(dvc_dir, validate=False)\n        hardlink_lock = config.get(\"core\", {}).get(\"hardlink_lock\", False)\n        updater = Updater(tmp_dir, hardlink_lock=hardlink_lock)\n        updater.fetch(detach=False)\n\n        return 0\n\n\nclass CmdDaemonAnalytics(CmdDaemonBase):\n    def run(self):\n        from dvc import analytics\n\n        analytics.send(self.args.target)\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/__init__.py_argparse__prettify.return._fmt_entry_for_entry_in_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/__init__.py_argparse__prettify.return._fmt_entry_for_entry_in_", "embedding": null, "metadata": {"file_path": "dvc/command/ls/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 22, "span_ids": ["imports", "_prettify"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\nimport sys\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBaseNoRepo, append_doc_link\nfrom dvc.command.ls.ls_colors import LsColors\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\ndef _prettify(entries, with_color=False):\n    if with_color:\n        ls_colors = LsColors()\n        fmt = ls_colors.format\n    else:\n\n        def fmt(entry):\n            return entry[\"path\"]\n\n    return [fmt(entry) for entry in entries]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/__init__.py_CmdList_CmdList.run.try_.except_DvcException_.return.1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/ls/__init__.py_CmdList_CmdList.run.try_.except_DvcException_.return.1", "embedding": null, "metadata": {"file_path": "dvc/command/ls/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 25, "end_line": 43, "span_ids": ["CmdList.run", "CmdList"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdList(CmdBaseNoRepo):\n    def run(self):\n        from dvc.repo import Repo\n\n        try:\n            entries = Repo.ls(\n                self.args.url,\n                self.args.path,\n                rev=self.args.rev,\n                recursive=self.args.recursive,\n                dvc_only=self.args.dvc_only,\n            )\n            if entries:\n                entries = _prettify(entries, sys.stdout.isatty())\n                logger.info(\"\\n\".join(entries))\n            return 0\n        except DvcException:\n            logger.exception(f\"failed to list '{self.args.url}'\")\n            return 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/__init__.py__get_loads_from.return.__get_stage_s_info_copy": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/__init__.py__get_loads_from.return.__get_stage_s_info_copy", "embedding": null, "metadata": {"file_path": "dvc/dependency/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 60, "end_line": 91, "span_ids": ["loadd_from", "loads_from", "_get"], "tokens": 266}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get(stage, p, info):\n    parsed = urlparse(p) if p else None\n    if parsed and parsed.scheme == \"remote\":\n        tree = get_cloud_tree(stage.repo, name=parsed.netloc)\n        return DEP_MAP[tree.scheme](stage, p, info, tree=tree)\n\n    if info and info.get(RepoDependency.PARAM_REPO):\n        repo = info.pop(RepoDependency.PARAM_REPO)\n        return RepoDependency(repo, stage, p, info)\n\n    if info and info.get(ParamsDependency.PARAM_PARAMS):\n        params = info.pop(ParamsDependency.PARAM_PARAMS)\n        return ParamsDependency(stage, p, params)\n\n    for d in DEPS:\n        if d.supported(p):\n            return d(stage, p, info)\n    return LocalDependency(stage, p, info)\n\n\ndef loadd_from(stage, d_list):\n    ret = []\n    for d in d_list:\n        p = d.pop(BaseOutput.PARAM_PATH, None)\n        ret.append(_get(stage, p, d))\n    return ret\n\n\ndef loads_from(stage, s_list, erepo=None):\n    assert isinstance(s_list, list)\n    info = {RepoDependency.PARAM_REPO: erepo} if erepo else {}\n    return [_get(stage, s, info.copy()) for s in s_list]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_collections_check_dvc_filename.if_not_is_valid_filename_.raise_StageFileBadNameErr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_collections_check_dvc_filename.if_not_is_valid_filename_.raise_StageFileBadNameErr", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 67, "span_ids": ["imports", "is_dvc_file", "ParametrizedDumpError", "check_dvc_filename", "is_lock_file", "is_valid_filename", "LockfileCorruptedError"], "tokens": 365}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import collections\nimport contextlib\nimport logging\nimport os\n\nfrom voluptuous import MultipleInvalid\n\nfrom dvc.exceptions import DvcException\nfrom dvc.stage import serialize\nfrom dvc.stage.exceptions import (\n    StageFileBadNameError,\n    StageFileDoesNotExistError,\n    StageFileFormatError,\n    StageFileIsNotDvcFileError,\n)\nfrom dvc.stage.loader import SingleStageLoader, StageLoader\nfrom dvc.utils import relpath\nfrom dvc.utils.collections import apply_diff\nfrom dvc.utils.serialize import (\n    dump_yaml,\n    load_yaml,\n    modify_yaml,\n    parse_yaml,\n    parse_yaml_for_update,\n)\n\nlogger = logging.getLogger(__name__)\n\nDVC_FILE = \"Dvcfile\"\nDVC_FILE_SUFFIX = \".dvc\"\nPIPELINE_FILE = \"dvc.yaml\"\nPIPELINE_LOCK = \"dvc.lock\"\n\n\nclass LockfileCorruptedError(DvcException):\n    pass\n\n\nclass ParametrizedDumpError(DvcException):\n    pass\n\n\ndef is_valid_filename(path):\n    return path.endswith(DVC_FILE_SUFFIX) or os.path.basename(path) in [\n        DVC_FILE,\n        PIPELINE_FILE,\n    ]\n\n\ndef is_dvc_file(path):\n    return os.path.isfile(path) and (\n        is_valid_filename(path) or is_lock_file(path)\n    )\n\n\ndef is_lock_file(path):\n    return os.path.basename(path) == PIPELINE_LOCK\n\n\ndef check_dvc_filename(path):\n    if not is_valid_filename(path):\n        raise StageFileBadNameError(\n            \"bad DVC-file name '{}'. DVC-files should be named \"\n            \"'Dvcfile' or have a '.dvc' suffix (e.g. '{}.dvc').\".format(\n                relpath(path), os.path.basename(path)\n            )\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_LoggerHandler_LoggerHandler.emit.try_.except_Exception_noqa.self_handleError_record_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py_LoggerHandler_LoggerHandler.emit.try_.except_Exception_noqa.self_handleError_record_", "embedding": null, "metadata": {"file_path": "dvc/logger.py", "file_name": "logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 125, "end_line": 141, "span_ids": ["LoggerHandler.handleError", "LoggerHandler", "LoggerHandler.emit"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LoggerHandler(logging.StreamHandler):\n    def handleError(self, record):\n        super().handleError(record)\n        raise LoggingException(record)\n\n    def emit(self, record):\n        \"\"\"Write to Tqdm's stream so as to not break progress-bars\"\"\"\n        try:\n            msg = self.format(record)\n            Tqdm.write(\n                msg, file=self.stream, end=getattr(self, \"terminator\", \"\\n\")\n            )\n            self.flush()\n        except RecursionError:\n            raise\n        except Exception:  # noqa, pylint: disable=broad-except\n            self.handleError(record)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py__is_verbose_disable_other_loggers.for_logger_name_logger_.if_logger_name_dvc_a.logger.disabled.True": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/logger.py__is_verbose_disable_other_loggers.for_logger_name_logger_.if_logger_name_dvc_a.logger.disabled.True", "embedding": null, "metadata": {"file_path": "dvc/logger.py", "file_name": "logger.py", "file_type": "text/x-python", "category": "implementation", "start_line": 144, "end_line": 179, "span_ids": ["_stack_trace", "_is_verbose", "disable_other_loggers", "_iter_causes"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _is_verbose():\n    return (\n        logging.NOTSET\n        < logging.getLogger(\"dvc\").getEffectiveLevel()\n        <= logging.DEBUG\n    )\n\n\ndef _iter_causes(exc):\n    while exc:\n        yield str(exc)\n        exc = exc.__cause__\n\n\ndef _stack_trace(exc_info):\n    import traceback\n\n    return (\n        \"\\n\"\n        \"{red}{line}{nc}\\n\"\n        \"{trace}\"\n        \"{red}{line}{nc}\".format(\n            red=colorama.Fore.RED,\n            line=\"-\" * 60,\n            trace=\"\".join(traceback.format_exception(*exc_info)),\n            nc=colorama.Fore.RESET,\n        )\n    )\n\n\ndef disable_other_loggers():\n    logging.captureWarnings(True)\n    root = logging.root\n    for (logger_name, logger) in root.manager.loggerDict.items():\n        if logger_name != \"dvc\" and not logger_name.startswith(\"dvc.\"):\n            logger.disabled = True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_logging_Updater.check.self__with_lock_self__che": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_logging_Updater.check.self__with_lock_self__che", "embedding": null, "metadata": {"file_path": "dvc/updater.py", "file_name": "updater.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 58, "span_ids": ["Updater._with_lock", "Updater.__init__", "imports", "Updater", "Updater.check", "Updater._is_outdated_file"], "tokens": 384}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport sys\nimport time\n\nimport colorama\nfrom packaging import version\n\nfrom dvc import __version__\nfrom dvc.config import Config, to_bool\nfrom dvc.lock import LockError, make_lock\nfrom dvc.utils import boxify, env2bool\nfrom dvc.utils.pkg import PKG\n\nlogger = logging.getLogger(__name__)\n\n\nclass Updater:  # pragma: no cover\n    URL = \"https://updater.dvc.org\"\n    UPDATER_FILE = \"updater\"\n    TIMEOUT = 24 * 60 * 60  # every day\n    TIMEOUT_GET = 10\n\n    def __init__(self, tmp_dir, friendly=False, hardlink_lock=False):\n        self.updater_file = os.path.join(tmp_dir, self.UPDATER_FILE)\n        self.lock = make_lock(\n            self.updater_file + \".lock\",\n            tmp_dir=tmp_dir,\n            friendly=friendly,\n            hardlink_lock=hardlink_lock,\n        )\n        self.current = version.parse(__version__).base_version\n\n    def _is_outdated_file(self):\n        ctime = os.path.getmtime(self.updater_file)\n        outdated = time.time() - ctime >= self.TIMEOUT\n        if outdated:\n            logger.debug(f\"'{self.updater_file}' is outdated\")\n        return outdated\n\n    def _with_lock(self, func, action):\n        try:\n            with self.lock:\n                func()\n        except LockError:\n            msg = \"Failed to acquire '{}' before {} updates\"\n            logger.debug(msg.format(self.lock.lockfile, action))\n\n    def check(self):\n        if (\n            os.getenv(\"CI\")\n            or env2bool(\"DVC_TEST\")\n            or PKG == \"snap\"\n            or not self.is_enabled()\n        ):\n            return\n\n        self._with_lock(self._check, \"checking\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater._check_Updater._check.if_version_parse_self_cur.self__notify_latest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater._check_Updater._check.if_version_parse_self_cur.self__notify_latest_", "embedding": null, "metadata": {"file_path": "dvc/updater.py", "file_name": "updater.py", "file_type": "text/x-python", "category": "implementation", "start_line": 54, "end_line": 72, "span_ids": ["Updater._check"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Updater:\n\n    def _check(self):\n        if not os.path.exists(self.updater_file) or self._is_outdated_file():\n            self.fetch()\n            return\n\n        with open(self.updater_file) as fobj:\n            import json\n\n            try:\n                info = json.load(fobj)\n                latest = info[\"version\"]\n            except Exception as exc:  # pylint: disable=broad-except\n                msg = \"'{}' is not a valid json: {}\"\n                logger.debug(msg.format(self.updater_file, exc))\n                self.fetch()\n                return\n\n        if version.parse(self.current) < version.parse(latest):\n            self._notify(latest)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater.fetch_Updater._get_latest_version.with_open_self_updater_fi.json_dump_info_fobj_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/updater.py_Updater.fetch_Updater._get_latest_version.with_open_self_updater_fi.json_dump_info_fobj_", "embedding": null, "metadata": {"file_path": "dvc/updater.py", "file_name": "updater.py", "file_type": "text/x-python", "category": "implementation", "start_line": 80, "end_line": 103, "span_ids": ["Updater.fetch", "Updater._get_latest_version"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Updater:\n\n    def fetch(self, detach=True):\n        from dvc.daemon import daemon\n\n        if detach:\n            daemon([\"updater\"])\n            return\n\n        self._with_lock(self._get_latest_version, \"fetching\")\n\n    def _get_latest_version(self):\n        import json\n\n        import requests\n\n        try:\n            resp = requests.get(self.URL, timeout=self.TIMEOUT_GET)\n            info = resp.json()\n        except requests.exceptions.RequestException as exc:\n            msg = \"Failed to retrieve latest version: {}\"\n            logger.debug(msg.format(exc))\n            return\n\n        with open(self.updater_file, \"w+\") as fobj:\n            json.dump(info, fobj)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/__main__.py__Needs_investigation_py_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/__main__.py__Needs_investigation_py_", "embedding": null, "metadata": {"file_path": "tests/__main__.py", "file_name": "__main__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 21, "span_ids": ["docstring"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# Needs investigation, pylint was running tests\n# Could be `pylint_pytest` plugin, skipping check for this file for now\n# pylint: skip-file\n\nimport os\nimport sys\nfrom subprocess import check_call\n\nREPO_ROOT = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))\nos.chdir(REPO_ROOT)\n\nos.putenv(\n    \"PATH\", \":\".join([os.path.join(REPO_ROOT, \"bin\"), os.getenv(\"PATH\")])\n)\nos.putenv(\"DVC_HOME\", REPO_ROOT)\n\nparams = \" \".join(sys.argv[1:])\n\ncmd = \"pytest -v -n=4 --cov=dvc --durations=0 {params}\".format(params=params)\ncheck_call(cmd, shell=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_data_cloud_error_cli_test_warn_on_outdated_stage.with_caplog_at_level_logg.assert_expected_warning_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_data_cloud_error_cli_test_warn_on_outdated_stage.with_caplog_at_level_logg.assert_expected_warning_i", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 161, "end_line": 187, "span_ids": ["test_warn_on_outdated_stage", "test_data_cloud_error_cli"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_data_cloud_error_cli(dvc):\n    f = \"non-existing-file\"\n    assert main([\"status\", \"-c\", f])\n    assert main([\"push\", f])\n    assert main([\"pull\", f])\n    assert main([\"fetch\", f])\n\n\ndef test_warn_on_outdated_stage(tmp_dir, dvc, local_remote, caplog):\n    stage = dvc.run(outs=[\"bar\"], cmd=\"echo bar > bar\", single_stage=True)\n    assert main([\"push\"]) == 0\n\n    stage_file_path = stage.relpath\n    content = load_yaml(stage_file_path)\n    del content[\"outs\"][0][\"md5\"]\n    dump_yaml(stage_file_path, content)\n\n    with caplog.at_level(logging.WARNING, logger=\"dvc\"):\n        caplog.clear()\n        assert main([\"status\", \"-c\"]) == 0\n        expected_warning = (\n            \"Output 'bar'(stage: 'bar.dvc') is missing version info. \"\n            \"Cache for it will not be collected. \"\n            \"Use `dvc repro` to get your pipeline up to date.\"\n        )\n\n        assert expected_warning in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_stage_collection_test_stage_collection.assert_set_dvc_stages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_stage_collection_test_stage_collection.assert_set_dvc_stages_", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 137, "end_line": 160, "span_ids": ["test_stage_collection"], "tokens": 169}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_collection(tmp_dir, dvc):\n    tmp_dir.gen(\n        {\n            \"dir\": {\"file1\": \"file1\", \"file2\": \"file2\"},\n            \"foo\": \"foo\",\n            \"bar\": \"bar\",\n        }\n    )\n    (stage1,) = dvc.add(\"dir\")\n    stage2 = dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        metrics=[\"foo2\"],\n        always_changed=True,\n    )\n    stage3 = dvc.run(\n        cmd=\"cp bar bar2\",\n        deps=[\"bar\"],\n        metrics=[\"bar2\"],\n        always_changed=True,\n        single_stage=True,\n    )\n    assert set(dvc.stages) == {stage1, stage3, stage2}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_stage_accompanies_target_test_import_stage_accompanies_target.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_stage_accompanies_target_test_import_stage_accompanies_target.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 100, "span_ids": ["test_import_stage_accompanies_target"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_stage_accompanies_target(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file1\", \"file1 content\", commit=\"commit file\")\n\n    tmp_dir.gen({\"dir\": {}})\n    erepo = {\"url\": os.fspath(erepo_dir)}\n    dvc.imp_url(\"file1\", out=os.path.join(\"dir\", \"imported_file\"), erepo=erepo)\n\n    assert (tmp_dir / \"dir\" / \"imported_file\").exists()\n    assert (tmp_dir / \"dir\" / \"imported_file.dvc\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_not_existed_url_test_ls_shows_pipeline_tracked_outs.match_files_files_ba": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_not_existed_url_test_ls_shows_pipeline_tracked_outs.match_files_files_ba", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 430, "end_line": 447, "span_ids": ["test_ls_not_existed_url", "test_ls_shows_pipeline_tracked_outs"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_not_existed_url():\n    from time import time\n\n    dirname = \"__{}_{}\".format(\"not_existed\", time())\n    with pytest.raises(CloneError):\n        Repo.ls(dirname, recursive=True)\n\n\ndef test_ls_shows_pipeline_tracked_outs(tmp_dir, dvc, scm, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    dvc.scm.add([PIPELINE_FILE, PIPELINE_LOCK])\n    dvc.scm.commit(\"add pipeline stage\")\n\n    files = Repo.ls(os.curdir, dvc_only=True)\n    match_files(files, (((\"bar\",), True),))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproDepUnderDir_TestReproDepUnderDir.test.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproDepUnderDir_TestReproDepUnderDir.test.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 231, "end_line": 252, "span_ids": ["TestReproDepUnderDir.test", "TestReproDepUnderDir"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproDepUnderDir(SingleStageRun, TestDvc):\n    def test(self):\n        stages = self.dvc.add(self.DATA_DIR)\n        self.assertTrue(stages and stages[0] is not None)\n\n        file1 = \"file1\"\n        stage = self._run(\n            fname=file1 + \".dvc\",\n            outs=[file1],\n            deps=[self.DATA, self.CODE],\n            cmd=f\"python {self.CODE} {self.DATA} {file1}\",\n            name=\"copy-data-file1\",\n        )\n\n        self.assertTrue(filecmp.cmp(file1, self.DATA, shallow=False))\n\n        os.unlink(self.DATA)\n        shutil.copyfile(self.FOO, self.DATA)\n\n        stages = self.dvc.reproduce(self._get_stage_target(stage))\n        self.assertEqual(len(stages), 2)\n        self.assertTrue(filecmp.cmp(file1, self.FOO, shallow=False))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_git_hook.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_git_hook.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_git_hook.py", "file_name": "test_git_hook.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["imports", "test_out_of_repo"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.cli import parse_args\nfrom dvc.command.git_hook import CmdPostCheckout, CmdPreCommit, CmdPrePush\n\n\n@pytest.mark.parametrize(\n    \"hook, cls\",\n    [\n        (\"pre-commit\", CmdPreCommit),\n        (\"post-checkout\", CmdPostCheckout),\n        (\"pre-push\", CmdPrePush),\n    ],\n)\ndef test_out_of_repo(tmp_dir, hook, cls, mocker):\n    cli_args = parse_args([\"git-hook\", hook])\n    assert cli_args.func == cls\n    cmd = cli_args.func(cli_args)\n    mock_main = mocker.patch(\"dvc.main.main\")\n    assert cmd.run() == 0\n    assert not mock_main.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py__pylint_disable_unsubsc_test_load_from_pipeline.for_i_out_in_enumerate_o.assert_type_test_func_out": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/output/test_load.py__pylint_disable_unsubsc_test_load_from_pipeline.for_i_out_in_enumerate_o.assert_type_test_func_out", "embedding": null, "metadata": {"file_path": "tests/unit/output/test_load.py", "file_name": "test_load.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 43, "span_ids": ["test_load_from_pipeline", "docstring"], "tokens": 321}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint: disable=unsubscriptable-object\n\nimport pytest\n\nfrom dvc import output\nfrom dvc.output import LocalOutput, S3Output\nfrom dvc.stage import Stage\n\n\n@pytest.mark.parametrize(\n    \"out_type,type_test_func\",\n    [\n        (\"outs\", lambda o: not (o.metric or o.plot)),\n        (\"metrics\", lambda o: o.metric and not o.plot),\n        (\"plots\", lambda o: o.plot and not o.metric),\n    ],\n    ids=(\"outs\", \"metrics\", \"plots\"),\n)\ndef test_load_from_pipeline(dvc, out_type, type_test_func):\n    outs = output.load_from_pipeline(\n        Stage(dvc),\n        [\n            \"file1\",\n            \"file2\",\n            {\"file3\": {\"cache\": True}},\n            {},\n            {\"file4\": {\"cache\": False}},\n            {\"file5\": {\"persist\": False}},\n            {\"file6\": {\"persist\": True, \"cache\": False}},\n        ],\n        out_type,\n    )\n    cached_outs = {\"file1\", \"file2\", \"file3\", \"file5\"}\n    persisted_outs = {\"file6\"}\n    assert len(outs) == 6\n\n    for i, out in enumerate(outs, start=1):\n        assert isinstance(out, LocalOutput)\n        assert out.def_path == f\"file{i}\"\n        assert out.use_cache == (out.def_path in cached_outs)\n        assert out.persist == (out.def_path in persisted_outs)\n        assert not out.hash_info\n        assert type_test_func(out)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_run.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_run.py__", "embedding": null, "metadata": {"file_path": "tests/unit/repo/test_run.py", "file_name": "test_run.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 13, "span_ids": ["imports", "test_file"], "tokens": 84}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.exceptions import InvalidArgumentError\n\n\ndef test_file(tmp_dir, dvc):\n    msg = (\n        \"`--file` is currently incompatible with `-n|--name` \"\n        \"and requires `--single-stage`\"\n    )\n    with pytest.raises(InvalidArgumentError, match=msg):\n        dvc.run(fname=\"path/dvc.yaml\", name=\"my\", cmd=\"mycmd\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_test_stage_run_ignore_sigint_test_stage_run_ignore_sigint.assert_signal_getsignal_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_test_stage_run_ignore_sigint_test_stage_run_ignore_sigint.assert_signal_getsignal_s", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 78, "end_line": 98, "span_ids": ["test_stage_run_ignore_sigint"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    not isinstance(\n        threading.current_thread(),\n        threading._MainThread,  # noqa, pylint: disable=protected-access\n    ),\n    reason=\"Not running in the main thread.\",\n)\ndef test_stage_run_ignore_sigint(dvc, mocker):\n    proc = mocker.Mock()\n    communicate = mocker.Mock()\n    proc.configure_mock(returncode=0, communicate=communicate)\n    popen = mocker.patch.object(subprocess, \"Popen\", return_value=proc)\n    signal_mock = mocker.patch(\"signal.signal\")\n\n    dvc.run(cmd=\"path\", single_stage=True)\n\n    assert popen.called_once()\n    assert communicate.called_once_with()\n    signal_mock.assert_any_call(signal.SIGINT, signal.SIG_IGN)\n    # pylint: disable=comparison-with-callable\n    assert signal.getsignal(signal.SIGINT) == signal.default_int_handler", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_test_always_changed_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_stage.py_test_always_changed_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 98, "end_line": 122, "span_ids": ["test_always_changed", "test_external_outs"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_always_changed(dvc):\n    stage = Stage(dvc, \"path\", always_changed=True)\n    stage.save()\n    with dvc.lock:\n        assert stage.changed()\n        assert stage.status()[\"path\"] == [\"always changed\"]\n\n\ndef test_external_outs(tmp_path_factory, dvc):\n    from dvc.stage import create_stage\n    from dvc.stage.exceptions import StageExternalOutputsError\n\n    tmp_path = tmp_path_factory.mktemp(\"external-outs\")\n    foo = tmp_path / \"foo\"\n    foo.write_text(\"foo\")\n\n    with pytest.raises(StageExternalOutputsError):\n        create_stage(Stage, dvc, \"path.dvc\", outs=[os.fspath(foo)])\n\n    with dvc.config.edit() as conf:\n        conf[\"remote\"][\"myremote\"] = {\"url\": os.fspath(tmp_path)}\n\n    create_stage(Stage, dvc, \"path.dvc\", outs=[\"remote://myremote/foo\"])\n    create_stage(Stage, dvc, \"path.dvc\", outs=[os.fspath(foo)], external=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_check_updates_test_check_updates.if_notify_.else_.assert_not_caplog_text": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_check_updates_test_check_updates.if_notify_.else_.assert_not_caplog_text", "embedding": null, "metadata": {"file_path": "tests/unit/test_updater.py", "file_name": "test_updater.py", "file_type": "text/x-python", "category": "test", "start_line": 47, "end_line": 68, "span_ids": ["test_check_updates"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"current,latest,notify\",\n    [\n        (\"0.0.2\", \"0.0.2\", False),\n        (\"0.0.2\", \"0.0.3\", True),\n        (\"0.0.2\", \"0.0.1\", False),\n    ],\n    ids=[\"uptodate\", \"behind\", \"ahead\"],\n)\ndef test_check_updates(mock_tty, updater, caplog, current, latest, notify):\n    updater.current = current\n    with open(updater.updater_file, \"w+\") as f:\n        json.dump({\"version\": latest}, f)\n\n    caplog.clear()\n    with caplog.at_level(logging.INFO, logger=\"dvc.updater\"):\n        updater.check()\n\n    if notify:\n        assert f\"Update available {current} -> {latest}\" in caplog.text\n    else:\n        assert not caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_check_refetches_each_day_test_check_refetches_each_day.mock_time_assert_called_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_check_refetches_each_day_test_check_refetches_each_day.mock_time_assert_called_", "embedding": null, "metadata": {"file_path": "tests/unit/test_updater.py", "file_name": "test_updater.py", "file_type": "text/x-python", "category": "test", "start_line": 71, "end_line": 85, "span_ids": ["test_check_refetches_each_day"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_check_refetches_each_day(mock_tty, updater, caplog, mocker):\n    updater.current = \"0.0.8\"\n    with open(updater.updater_file, \"w+\") as f:\n        json.dump({\"version\": \"0.0.9\"}, f)\n    fetch = mocker.patch.object(updater, \"fetch\")\n\n    time_value = time.time() + 24 * 60 * 60 + 10\n    mock_time = mocker.patch(\"time.time\", return_value=time_value)\n\n    caplog.clear()\n    with caplog.at_level(logging.INFO, logger=\"dvc.updater\"):\n        updater.check()\n    assert not caplog.text\n    fetch.assert_called_once()\n    mock_time.assert_called()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_check_fetches_on_invalid_data_format_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_check_fetches_on_invalid_data_format_", "embedding": null, "metadata": {"file_path": "tests/unit/test_updater.py", "file_name": "test_updater.py", "file_type": "text/x-python", "category": "test", "start_line": 88, "end_line": 109, "span_ids": ["test_check", "test_check_fetches_on_invalid_data_format"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_check_fetches_on_invalid_data_format(\n    mock_tty, updater, caplog, mocker\n):\n    updater.current = \"0.0.5\"\n    with open(updater.updater_file, \"w+\") as f:\n        f.write('\"{\"version: \"0.0.6\"')\n    fetch = mocker.patch.object(updater, \"fetch\")\n    caplog.clear()\n    with caplog.at_level(logging.INFO, logger=\"dvc.updater\"):\n        updater.check()\n    assert not caplog.text\n    fetch.assert_called_once()\n\n\n@mock.patch(\"dvc.updater.Updater._check\")\ndef test_check(mock_check, updater):\n    updater.check()\n    updater.check()\n    updater.check()\n\n    assert mock_check.call_count == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_collections.py__pylint_disable_unidiom_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_collections.py__pylint_disable_unidiom_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_collections.py", "file_name": "test_collections.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 51, "span_ids": ["test_apply_diff_seq", "MyDict", "test_apply_diff_mapping", "docstring", "test_apply_diff_is_inplace", "MyInt"], "tokens": 321}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint: disable=unidiomatic-typecheck\nfrom dvc.utils.collections import apply_diff\n\n\nclass MyDict(dict):\n    pass\n\n\nclass MyInt(int):\n    pass\n\n\ndef test_apply_diff_is_inplace():\n    dest = MyDict()\n    dest.attr = 42  # pylint: disable=attribute-defined-outside-init\n    apply_diff({}, dest)\n\n    assert type(dest) is MyDict, \"Preserves class\"\n    assert dest.attr == 42, \"Preserves custom attrs\"\n\n\ndef test_apply_diff_mapping():\n    src = {\"a\": 1}\n    dest = {\"b\": 2}\n    apply_diff(src, dest)\n    assert dest == src, \"Adds and removes keys\"\n\n    src = {\"a\": 1}\n    dest = {\"a\": MyInt(1)}\n    apply_diff(src, dest)\n    assert type(dest[\"a\"]) is MyInt, \"Does not replace equals\"\n\n    src = {\"d\": {\"a\": 1}}\n    inner = {}\n    dest = {\"d\": inner}\n    apply_diff(src, dest)\n    assert dest[\"d\"] is inner, \"Updates inner dicts\"\n\n\ndef test_apply_diff_seq():\n    src = [1]\n    dest = [MyInt(1)]\n    apply_diff(src, dest)\n    assert type(dest[0]) is MyInt, \"Does not replace equals\"\n\n    src = {\"l\": [1]}\n    inner = []\n    dest = {\"l\": inner}\n    apply_diff(src, dest)\n    assert dest[\"l\"] is inner, \"Updates inner lists\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_FileMixin._load_FileMixin._load.return.d_stage_text": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_FileMixin._load_FileMixin._load.return.d_stage_text", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 95, "end_line": 111, "span_ids": ["FileMixin._load"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class FileMixin:\n\n    def _load(self):\n        # it raises the proper exceptions by priority:\n        # 1. when the file doesn't exists\n        # 2. filename is not a DVC-file\n        # 3. path doesn't represent a regular file\n        if not self.exists():\n            raise StageFileDoesNotExistError(self.path)\n        if self.verify:\n            check_dvc_filename(self.path)\n        if not self.repo.tree.isfile(self.path):\n            raise StageFileIsNotDvcFileError(self.path)\n\n        with self.repo.tree.open(self.path) as fd:\n            stage_text = fd.read()\n        d = parse_yaml(stage_text, self.path)\n        self.validate(d, self.relpath)\n        return d, stage_text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py__pylint_disable_protect__BasePath.isin_or_eq._pylint_disable_no_memb": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py__pylint_disable_protect__BasePath.isin_or_eq._pylint_disable_no_memb", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 22, "span_ids": ["_BasePath.overlaps", "_BasePath", "_BasePath.isin_or_eq", "docstring"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint: disable=protected-access\nimport os\nimport pathlib\nimport posixpath\nfrom typing import Callable\nfrom urllib.parse import urlparse\n\nfrom funcy import cached_property\n\nfrom dvc.utils import relpath\n\n\nclass _BasePath:\n    def overlaps(self, other):\n        if isinstance(other, (str, bytes)):\n            other = self.__class__(other)\n        elif self.__class__ != other.__class__:\n            return False\n        return self.isin_or_eq(other) or other.isin(self)\n\n    def isin_or_eq(self, other):\n        return self == other or self.isin(other)  # pylint: disable=no-member", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_PathInfo_PathInfo.as_posix.return.self_fspath_replace_f_sep": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_PathInfo_PathInfo.as_posix.return.self_fspath_replace_f_sep", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 24, "end_line": 47, "span_ids": ["PathInfo.__new__", "PathInfo", "PathInfo.as_posix"], "tokens": 250}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PathInfo(pathlib.PurePath, _BasePath):\n    # Use __slots__ in PathInfo objects following PurePath implementation.\n    # This makes objects smaller and speeds up attribute access.\n    # We don't add any fields so it's empty.\n    __slots__ = ()\n    scheme = \"local\"\n\n    def __new__(cls, *args):\n        # Construct a proper subclass depending on current os\n        if cls is PathInfo:\n            cls = (  # pylint: disable=self-cls-assignment\n                WindowsPathInfo if os.name == \"nt\" else PosixPathInfo\n            )\n\n        return cls._from_parts(args)\n\n    def as_posix(self):\n        f = self._flavour  # pylint: disable=no-member\n        # Unlike original implementation [1] that uses `str()` we actually need\n        # to use `fspath`, because we've overridden `__str__` method to return\n        # relative paths, which will break original `as_posix`.\n        #\n        # [1] https://github.com/python/cpython/blob/v3.7.0/Lib/pathlib.py#L692\n        return self.fspath.replace(f.sep, \"/\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_external_file_test_add_external_file.assert_dvc_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_external_file_test_add_external_file.assert_dvc_status_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 264, "end_line": 319, "span_ids": ["test_add_external_file"], "tokens": 466}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace, hash_name, hash_value\",\n    [\n        (\n            pytest.lazy_fixture(\"local_cloud\"),\n            \"md5\",\n            \"8c7dd922ad47494fc02c388e12c00eac\",\n        ),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            \"md5\",\n            \"8c7dd922ad47494fc02c388e12c00eac\",\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n        (\n            pytest.lazy_fixture(\"s3\"),\n            \"etag\",\n            \"8c7dd922ad47494fc02c388e12c00eac\",\n        ),\n        (pytest.lazy_fixture(\"gs\"), \"md5\", \"8c7dd922ad47494fc02c388e12c00eac\"),\n        (\n            pytest.lazy_fixture(\"hdfs\"),\n            \"checksum\",\n            \"000002000000000000000000a86fe4d846edc1bf4c355cb6112f141e\",\n        ),\n        (\n            pytest.lazy_fixture(\"webhdfs\"),\n            \"checksum\",\n            \"000002000000000000000000a86fe4d846edc1bf4c355cb6112f141e00000000\",\n        ),\n    ],\n    indirect=[\"workspace\"],\n)\ndef test_add_external_file(tmp_dir, dvc, workspace, hash_name, hash_value):\n    from dvc.stage.exceptions import StageExternalOutputsError\n\n    workspace.gen(\"file\", \"file\")\n\n    with pytest.raises(StageExternalOutputsError):\n        dvc.add(workspace.url)\n\n    dvc.add(\"remote://workspace/file\")\n    assert (tmp_dir / \"file.dvc\").read_text() == (\n        \"outs:\\n\"\n        f\"- {hash_name}: {hash_value}\\n\"\n        \"  size: 4\\n\"\n        \"  path: remote://workspace/file\\n\"\n    )\n    assert (workspace / \"file\").read_text() == \"file\"\n    assert (\n        workspace / \"cache\" / hash_value[:2] / hash_value[2:]\n    ).read_text() == \"file\"\n\n    assert dvc.status() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_external_dir_test_add_external_dir.assert_workspace_cach": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_external_dir_test_add_external_dir.assert_workspace_cach", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 322, "end_line": 362, "span_ids": ["test_add_external_dir"], "tokens": 354}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace, hash_name, hash_value\",\n    [\n        (\n            pytest.lazy_fixture(\"local_cloud\"),\n            \"md5\",\n            \"b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\",\n        ),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            \"md5\",\n            \"b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\",\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n        (\n            pytest.lazy_fixture(\"s3\"),\n            \"etag\",\n            \"ec602a6ba97b2dd07bd6d2cd89674a60.dir\",\n        ),\n        (\n            pytest.lazy_fixture(\"gs\"),\n            \"md5\",\n            \"b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\",\n        ),\n    ],\n    indirect=[\"workspace\"],\n)\ndef test_add_external_dir(tmp_dir, dvc, workspace, hash_name, hash_value):\n    workspace.gen({\"dir\": {\"file\": \"file\", \"subdir\": {\"subfile\": \"subfile\"}}})\n\n    dvc.add(\"remote://workspace/dir\")\n    assert (tmp_dir / \"dir.dvc\").read_text() == (\n        \"outs:\\n\"\n        f\"- {hash_name}: {hash_value}\\n\"\n        \"  size: 11\\n\"\n        \"  nfiles: 2\\n\"\n        \"  path: remote://workspace/dir\\n\"\n    )\n    assert (workspace / \"cache\" / hash_value[:2] / hash_value[2:]).is_file()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_open_granular_test_missing.with_pytest_raises_FileMi.api_read_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_open_granular_test_missing.with_pytest_raises_FileMi.api_read_foo_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 113, "end_line": 155, "span_ids": ["test_open_granular", "test_missing"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@flaky(max_runs=3, min_passes=1)\n@pytest.mark.parametrize(\"remote\", all_clouds, indirect=True)\ndef test_open_granular(tmp_dir, dvc, remote):\n    tmp_dir.dvc_gen({\"dir\": {\"foo\": \"foo-text\"}})\n    dvc.push()\n\n    # Remove cache to force download\n    remove(dvc.cache.local.cache_dir)\n\n    with api.open(\"dir/foo\") as fd:\n        assert fd.read() == \"foo-text\"\n\n\n@pytest.mark.parametrize(\n    \"remote\",\n    [\n        pytest.lazy_fixture(cloud)\n        for cloud in [\n            \"s3\",\n            \"gs\",\n            \"azure\",\n            \"gdrive\",\n            \"oss\",\n            \"ssh\",\n            \"http\",\n            \"hdfs\",\n            \"webdav\",\n        ]\n    ],\n    indirect=True,\n)\ndef test_missing(tmp_dir, dvc, remote):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    # Remove cache to make foo missing\n    remove(dvc.cache.local.cache_dir)\n\n    api.read(\"foo\")\n\n    remove(\"foo\")\n\n    with pytest.raises(FileMissingError):\n        api.read(\"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py__pylint_disable_no_memb_test_run_load_one_for_multistage.assert_dvc_reproduce_co": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py__pylint_disable_no_memb_test_run_load_one_for_multistage.assert_dvc_reproduce_co", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 39, "span_ids": ["test_run_load_one_for_multistage", "docstring"], "tokens": 285}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint: disable=no-member\nimport textwrap\n\nimport pytest\n\nfrom dvc.dvcfile import (\n    PIPELINE_FILE,\n    PIPELINE_LOCK,\n    Dvcfile,\n    ParametrizedDumpError,\n    SingleStageFile,\n)\nfrom dvc.stage.exceptions import (\n    StageFileDoesNotExistError,\n    StageFileFormatError,\n)\nfrom dvc.stage.loader import StageNotFound\nfrom dvc.utils.serialize import dump_yaml\n\n\ndef test_run_load_one_for_multistage(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage1 = dvc.run(\n        cmd=\"cp foo foo2\",\n        deps=[\"foo\"],\n        name=\"copy-foo-foo2\",\n        outs_persist_no_cache=[\"foo2\"],\n        always_changed=True,\n    )\n    stage2 = Dvcfile(dvc, PIPELINE_FILE).stages[\"copy-foo-foo2\"]\n    assert stage1 == stage2\n    foo_out = stage2.outs[0]\n    assert stage2.cmd == \"cp foo foo2\"\n    assert stage2.name == \"copy-foo-foo2\"\n    assert foo_out.def_path == \"foo2\"\n    assert foo_out.persist\n    assert not foo_out.use_cache\n    assert stage2.deps[0].def_path == \"foo\"\n    assert dvc.reproduce(\":copy-foo-foo2\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_not_collect_pipeline_tracked_files_test_gc_not_collect_pipeline_tracked_files.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_not_collect_pipeline_tracked_files_test_gc_not_collect_pipeline_tracked_files.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 335, "end_line": 350, "span_ids": ["test_gc_not_collect_pipeline_tracked_files"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_not_collect_pipeline_tracked_files(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE, Dvcfile\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    tmp_dir.gen(\"bar\", \"bar\")\n\n    run_copy(\"foo\", \"foo2\", name=\"copy\")\n    shutil.rmtree(dvc.stage_cache.cache_dir)\n    assert _count_files(dvc.cache.local.cache_dir) == 1\n    dvc.gc(workspace=True, force=True)\n    assert _count_files(dvc.cache.local.cache_dir) == 1\n\n    # remove pipeline file and lockfile and check\n    Dvcfile(dvc, PIPELINE_FILE).remove(force=True)\n    dvc.gc(workspace=True, force=True)\n    assert _count_files(dvc.cache.local.cache_dir) == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_git_dir_test_get_git_dir.assert_tmp_dir_dst_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_git_dir_test_get_git_dir.assert_tmp_dir_dst_re", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 61, "span_ids": ["test_get_git_dir"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"erepo\", [pytest.lazy_fixture(\"git_dir\"), pytest.lazy_fixture(\"erepo_dir\")]\n)\ndef test_get_git_dir(tmp_dir, erepo):\n    src = \"some_directory\"\n    dst = \"some_directory_imported\"\n\n    erepo.scm_gen(\n        {src: {\"dir\": {\"file.txt\": \"hello\"}}}, commit=\"add a regular dir\"\n    )\n\n    Repo.get(os.fspath(erepo), src, dst)\n\n    assert (tmp_dir / dst).read_text() == {\"dir\": {\"file.txt\": \"hello\"}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_imported_directory_stage_test_pull_imported_directory_stage.assert_tmp_dir_dir_im": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_imported_directory_stage_test_pull_imported_directory_stage.assert_tmp_dir_dir_im", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 222, "span_ids": ["test_pull_imported_directory_stage"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_imported_directory_stage(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({\"dir\": {\"foo\": \"foo content\"}}, commit=\"create dir\")\n\n    dvc.imp(os.fspath(erepo_dir), \"dir\", \"dir_imported\")\n\n    remove(\"dir_imported\")\n    remove(dvc.cache.local.cache_dir)\n\n    dvc.pull([\"dir_imported.dvc\"])\n\n    assert (tmp_dir / \"dir_imported\").read_text() == {\"foo\": \"foo content\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_nonexistent_test_import_url_with_no_exec.assert_not_dst_exists_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_nonexistent_test_import_url_with_no_exec.assert_not_dst_exists_", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 103, "end_line": 114, "span_ids": ["test_import_url_with_no_exec", "test_import_url_nonexistent"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_url_nonexistent(dvc, erepo_dir):\n    with pytest.raises(DependencyDoesNotExistError):\n        dvc.imp_url(os.fspath(erepo_dir / \"non-existent\"))\n\n\ndef test_import_url_with_no_exec(tmp_dir, dvc, erepo_dir):\n    tmp_dir.gen({\"data_dir\": {\"file\": \"file content\"}})\n    src = os.path.join(\"data_dir\", \"file\")\n\n    dvc.imp_url(src, \".\", no_exec=True)\n    dst = tmp_dir / \"file\"\n    assert not dst.exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_test_import_url.assert_dvc_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_test_import_url.assert_dvc_status_", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 118, "end_line": 142, "span_ids": ["test_import_url"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace\",\n    [\n        pytest.lazy_fixture(\"local_cloud\"),\n        pytest.lazy_fixture(\"s3\"),\n        pytest.lazy_fixture(\"gs\"),\n        pytest.lazy_fixture(\"hdfs\"),\n        pytest.lazy_fixture(\"webhdfs\"),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n        pytest.lazy_fixture(\"http\"),\n    ],\n    indirect=True,\n)\ndef test_import_url(tmp_dir, dvc, workspace):\n    workspace.gen(\"file\", \"file\")\n    assert not (tmp_dir / \"file\").exists()  # sanity check\n    dvc.imp_url(\"remote://workspace/file\")\n    assert (tmp_dir / \"file\").read_text() == \"file\"\n\n    assert dvc.status() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_overwrite_preserves_meta_and_comment_test_run_overwrite_preserves_meta_and_comment.assert_tmp_dir_PIPELIN": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_overwrite_preserves_meta_and_comment_test_run_overwrite_preserves_meta_and_comment.assert_tmp_dir_PIPELIN", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 337, "end_line": 363, "span_ids": ["test_run_overwrite_preserves_meta_and_comment"], "tokens": 208}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_overwrite_preserves_meta_and_comment(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE\n\n    tmp_dir.gen({\"foo\": \"foo\", \"foo1\": \"foo1\"})\n    text = textwrap.dedent(\n        \"\"\"\\\n        stages:\n          copy-foo-bar:\n            cmd: python copy.py {src} {dest}\n            deps:\n            - copy.py\n            - {src}\n            outs:\n            # comments are preserved\n            - {dest}\n            meta:\n              name: meta is preserved too\n    \"\"\"\n    )\n    (tmp_dir / PIPELINE_FILE).write_text(text.format(src=\"foo\", dest=\"bar\"))\n    assert dvc.reproduce(PIPELINE_FILE)\n\n    assert run_copy(\"foo1\", \"bar1\", name=\"copy-foo-bar\", force=True)\n\n    assert (tmp_dir / PIPELINE_FILE).read_text() == text.format(\n        src=\"foo1\", dest=\"bar1\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_external_outputs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_external_outputs_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 358, "end_line": 444, "span_ids": ["test_run_external_outputs"], "tokens": 771}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace, hash_name, foo_hash, bar_hash\",\n    [\n        (\n            pytest.lazy_fixture(\"local_cloud\"),\n            \"md5\",\n            \"acbd18db4cc2f85cedef654fccc4a4d8\",\n            \"37b51d194a7513e45b56f6524f2d51f2\",\n        ),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            \"md5\",\n            \"acbd18db4cc2f85cedef654fccc4a4d8\",\n            \"37b51d194a7513e45b56f6524f2d51f2\",\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n        (\n            pytest.lazy_fixture(\"s3\"),\n            \"etag\",\n            \"acbd18db4cc2f85cedef654fccc4a4d8\",\n            \"37b51d194a7513e45b56f6524f2d51f2\",\n        ),\n        (\n            pytest.lazy_fixture(\"gs\"),\n            \"md5\",\n            \"acbd18db4cc2f85cedef654fccc4a4d8\",\n            \"37b51d194a7513e45b56f6524f2d51f2\",\n        ),\n        (\n            pytest.lazy_fixture(\"hdfs\"),\n            \"checksum\",\n            \"0000020000000000000000003dba826b9be9c6a8e2f8310a770555c4\",\n            \"00000200000000000000000075433c81259d3c38e364b348af52e84d\",\n        ),\n    ],\n    indirect=[\"workspace\"],\n)\ndef test_run_external_outputs(\n    tmp_dir, dvc, workspace, hash_name, foo_hash, bar_hash\n):\n    workspace.gen(\"foo\", \"foo\")\n    dvc.run(\n        name=\"mystage\",\n        cmd=\"mycmd\",\n        deps=[\"remote://workspace/foo\"],\n        outs=[\"remote://workspace/bar\"],\n        no_exec=True,\n    )\n\n    dvc_yaml = (\n        \"stages:\\n\"\n        \"  mystage:\\n\"\n        \"    cmd: mycmd\\n\"\n        \"    deps:\\n\"\n        \"    - remote://workspace/foo\\n\"\n        \"    outs:\\n\"\n        \"    - remote://workspace/bar\\n\"\n    )\n\n    assert (tmp_dir / \"dvc.yaml\").read_text() == dvc_yaml\n    assert not (tmp_dir / \"dvc.lock\").exists()\n\n    workspace.gen(\"bar\", \"bar\")\n    dvc.commit(\"dvc.yaml\", force=True)\n\n    assert (tmp_dir / \"dvc.yaml\").read_text() == dvc_yaml\n    assert (tmp_dir / \"dvc.lock\").read_text() == (\n        \"mystage:\\n\"\n        \"  cmd: mycmd\\n\"\n        \"  deps:\\n\"\n        \"  - path: remote://workspace/foo\\n\"\n        f\"    {hash_name}: {foo_hash}\\n\"\n        \"    size: 3\\n\"\n        \"  outs:\\n\"\n        \"  - path: remote://workspace/bar\\n\"\n        f\"    {hash_name}: {bar_hash}\\n\"\n        \"    size: 3\\n\"\n    )\n\n    assert (workspace / \"foo\").read_text() == \"foo\"\n    assert (workspace / \"bar\").read_text() == \"bar\"\n    assert (\n        workspace / \"cache\" / bar_hash[:2] / bar_hash[2:]\n    ).read_text() == \"bar\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_os_test_update_import.None_13": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_os_test_update_import.None_13", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 78, "span_ids": ["imports", "test_update_import"], "tokens": 585}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.dvcfile import Dvcfile\nfrom tests.unit.tree.test_repo import make_subrepo\n\n\n@pytest.mark.parametrize(\n    \"cached\", [True, False],\n)\ndef test_update_import(tmp_dir, dvc, erepo_dir, cached):\n    gen = erepo_dir.dvc_gen if cached else erepo_dir.scm_gen\n\n    with erepo_dir.branch(\"branch\", new=True), erepo_dir.chdir():\n        gen(\n            {\n                \"version\": \"branch\",\n                \"dir\": {\"version\": \"branch\", \"subdir\": {\"file\": \"file\"}},\n            },\n            commit=\"add version file\",\n        )\n        old_rev = erepo_dir.scm.get_rev()\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"version\", \"version\", rev=\"branch\")\n    dir_stage = dvc.imp(os.fspath(erepo_dir), \"dir\", \"dir\", rev=\"branch\")\n    assert dvc.status() == {}\n\n    assert (tmp_dir / \"version\").read_text() == \"branch\"\n    assert (tmp_dir / \"dir\").read_text() == {\n        \"version\": \"branch\",\n        \"subdir\": {\"file\": \"file\"},\n    }\n    assert stage.deps[0].def_repo[\"rev_lock\"] == old_rev\n    assert dir_stage.deps[0].def_repo[\"rev_lock\"] == old_rev\n\n    # Update version file\n    with erepo_dir.branch(\"branch\", new=False), erepo_dir.chdir():\n        gen(\n            {\n                \"version\": \"updated\",\n                \"dir\": {\"version\": \"updated\", \"subdir\": {\"file\": \"file\"}},\n            },\n            commit=\"update version content\",\n        )\n        new_rev = erepo_dir.scm.get_rev()\n\n    assert old_rev != new_rev\n\n    assert dvc.status() == {\n        \"dir.dvc\": [\n            {\n                \"changed deps\": {\n                    f\"dir ({os.fspath(erepo_dir)})\": \"update available\"\n                }\n            }\n        ],\n        \"version.dvc\": [\n            {\n                \"changed deps\": {\n                    f\"version ({os.fspath(erepo_dir)})\": \"update available\"\n                }\n            }\n        ],\n    }\n\n    (stage,) = dvc.update(stage.path)\n    (dir_stage,) = dvc.update(dir_stage.path)\n    assert dvc.status() == {}\n\n    assert (tmp_dir / \"version\").read_text() == \"updated\"\n    assert (tmp_dir / \"dir\").read_text() == {\n        \"version\": \"updated\",\n        \"subdir\": {\"file\": \"file\"},\n    }\n\n    assert stage.deps[0].def_repo[\"rev_lock\"] == new_rev\n    assert dir_stage.deps[0].def_repo[\"rev_lock\"] == new_rev", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/pylint_plugin_disable.py___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/pylint_plugin_disable.py___", "embedding": null, "metadata": {"file_path": "tests/pylint_plugin_disable.py", "file_name": "pylint_plugin_disable.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 48, "span_ids": ["register", "is_node_in_tests", "docstring"], "tokens": 309}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"\nDisable certain checks for the tests.\n\nTo disable new checks, add to the `SUPPRESS_CHECKS` dictionary,\nwith `message_id` of the check to disable as a key and a list of\nmethods that check for that particular message.\n\"\"\"\nimport os.path\nfrom typing import TYPE_CHECKING\n\nfrom pylint.checkers.base import NameChecker\nfrom pylint.checkers.classes import ClassChecker\n\nif TYPE_CHECKING:\n    from astroid import node_classes, scoped_nodes  # noqa\n    from pylint.lint import PyLinter\n\n\nTESTS_FOLDER = os.path.join(os.path.abspath(os.path.dirname(__file__)), \"\")\nSUPPRESS_CHECKS = {\n    \"protected-access\": [\n        ClassChecker.visit_assign,\n        ClassChecker.visit_attribute,\n    ],\n    \"blacklisted-name\": [\n        NameChecker.visit_global,\n        NameChecker.visit_assignname,\n    ],\n}\n\n\ndef is_node_in_tests(node: \"node_classes.NodeNG\"):\n    module: \"scoped_nodes.Module\" = node.root()\n    return module.file.startswith(TESTS_FOLDER)\n\n\ndef register(linter: \"PyLinter\"):  # noqa\n    try:\n        from pylint_plugin_utils import suppress_message\n    except ImportError:\n        print(\"Cannot suppress message. 'pylint_plugin_utils' not installed.\")\n        return\n\n    print(\"Registered custom plugin. Some checks will be disabled for tests.\")\n    for msg, checks in SUPPRESS_CHECKS.items():\n        for checker_method in checks:\n            suppress_message(linter, checker_method, msg, is_node_in_tests)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/base.py_pathlib_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/base.py_pathlib_", "embedding": null, "metadata": {"file_path": "tests/remotes/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 70, "span_ids": ["Base.gen", "Base.write_text", "Base.config", "Base.exists", "imports", "Base", "Base.read_text", "Base.read_bytes", "Base.get_url", "Base.is_dir", "Base._gen", "Base.close", "Base.mkdir", "Base.is_file", "Base.write_bytes", "Base.should_test"], "tokens": 328}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pathlib\n\nfrom funcy import cached_property\n\nfrom dvc.path_info import URLInfo\n\n\nclass Base(URLInfo):\n    def is_file(self):\n        raise NotImplementedError\n\n    def is_dir(self):\n        raise NotImplementedError\n\n    def exists(self):\n        raise NotImplementedError\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        raise NotImplementedError\n\n    def write_text(self, contents, encoding=None, errors=None):\n        raise NotImplementedError\n\n    def write_bytes(self, contents):\n        raise NotImplementedError\n\n    def read_text(self, encoding=None, errors=None):\n        raise NotImplementedError\n\n    def read_bytes(self):\n        raise NotImplementedError\n\n    def _gen(self, struct, prefix=None):\n        for name, contents in struct.items():\n            path = (prefix or self) / name\n\n            if isinstance(contents, dict):\n                if not contents:\n                    path.mkdir(parents=True)\n                else:\n                    self._gen(contents, prefix=path)\n            else:\n                path.parent.mkdir(parents=True)\n                if isinstance(contents, bytes):\n                    path.write_bytes(contents)\n                else:\n                    path.write_text(contents, encoding=\"utf-8\")\n\n    def gen(self, struct, text=\"\"):\n        if isinstance(struct, (str, bytes, pathlib.PurePath)):\n            struct = {struct: text}\n\n        self._gen(struct)\n        return struct.keys()\n\n    def close(self):\n        pass\n\n    @staticmethod\n    def should_test():\n        return True\n\n    @staticmethod\n    def get_url():\n        raise NotImplementedError\n\n    @cached_property\n    def config(self):\n        return {\"url\": self.url}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/gdrive.py__pylint_disable_abstract_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/gdrive.py__pylint_disable_abstract_", "embedding": null, "metadata": {"file_path": "tests/remotes/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 53, "span_ids": ["gdrive", "GDrive", "docstring", "GDrive.should_test", "GDrive._get_storagepath", "GDrive.get_url", "GDrive.config"], "tokens": 319}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint:disable=abstract-method\nimport os\nimport uuid\n\nimport pytest\nfrom funcy import cached_property\n\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.tree.gdrive import GDriveTree\n\nfrom .base import Base\n\nTEST_GDRIVE_REPO_BUCKET = \"root\"\n\n\nclass GDrive(Base, CloudURLInfo):\n    @staticmethod\n    def should_test():\n        return bool(os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA))\n\n    @cached_property\n    def config(self):\n        return {\n            \"url\": self.url,\n            \"gdrive_service_account_email\": \"test\",\n            \"gdrive_service_account_p12_file_path\": \"test.p12\",\n            \"gdrive_use_service_account\": True,\n        }\n\n    @staticmethod\n    def _get_storagepath():\n        return TEST_GDRIVE_REPO_BUCKET + \"/\" + str(uuid.uuid4())\n\n    @staticmethod\n    def get_url():\n        # NOTE: `get_url` should always return new random url\n        return \"gdrive://\" + GDrive._get_storagepath()\n\n\n@pytest.fixture\ndef gdrive(test_config, make_tmp_dir):\n    test_config.requires(\"gdrive\")\n    if not GDrive.should_test():\n        pytest.skip(\"no gdrive\")\n\n    # NOTE: temporary workaround\n    tmp_dir = make_tmp_dir(\"gdrive\", dvc=True)\n\n    ret = GDrive(GDrive.get_url())\n    tree = GDriveTree(tmp_dir.dvc, ret.config)\n    tree._gdrive_create_dir(\"root\", tree.path_info.path)\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/gs.py_locale_os_environ_GOOGLE_APPLIC": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/gs.py_locale_os_environ_GOOGLE_APPLIC", "embedding": null, "metadata": {"file_path": "tests/remotes/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 22, "span_ids": ["imports"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import locale\nimport os\nimport uuid\n\nimport pytest\nfrom funcy import cached_property\n\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.utils import env2bool\n\nfrom .base import Base\n\nTEST_GCP_REPO_BUCKET = os.environ.get(\"DVC_TEST_GCP_REPO_BUCKET\", \"dvc-test\")\n\nTEST_GCP_CREDS_FILE = os.path.abspath(\n    os.environ.get(\n        \"GOOGLE_APPLICATION_CREDENTIALS\",\n        os.path.join(\"scripts\", \"ci\", \"gcp-creds.json\"),\n    )\n)\n# Ensure that absolute path is used\nos.environ[\"GOOGLE_APPLICATION_CREDENTIALS\"] = TEST_GCP_CREDS_FILE", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/http.py__pylint_disable_abstract_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/http.py__pylint_disable_abstract_", "embedding": null, "metadata": {"file_path": "tests/remotes/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 50, "span_ids": ["HTTP.write_text", "HTTP.get_url", "http", "http_server", "HTTP", "HTTP.write_bytes", "HTTP.mkdir", "docstring"], "tokens": 293}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint:disable=abstract-method\nimport locale\nimport os\nimport uuid\n\nimport pytest\nimport requests\n\nfrom dvc.path_info import HTTPURLInfo\n\nfrom .base import Base\n\n\nclass HTTP(Base, HTTPURLInfo):\n    @staticmethod\n    def get_url(port):  # pylint: disable=arguments-differ\n        dname = str(uuid.uuid4())\n        return f\"http://127.0.0.1:{port}/{dname}\"\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert mode == 0o777\n        assert parents\n        assert not exist_ok\n\n    def write_bytes(self, contents):\n        assert isinstance(contents, bytes)\n        response = requests.post(self.url, data=contents)\n        assert response.status_code == 200\n\n    def write_text(self, contents, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        self.write_bytes(contents.encode(encoding))\n\n\n@pytest.fixture(scope=\"session\")\ndef http_server(test_config, tmp_path_factory):\n    from tests.utils.httpd import StaticFileServer\n\n    test_config.requires(\"http\")\n    directory = os.fspath(tmp_path_factory.mktemp(\"http\"))\n    with StaticFileServer(directory=directory) as httpd:\n        yield httpd\n\n\n@pytest.fixture\ndef http(http_server):\n    yield HTTP(HTTP.get_url(http_server.server_port))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/local.py__pylint_disable_cyclic__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/local.py__pylint_disable_cyclic__", "embedding": null, "metadata": {"file_path": "tests/remotes/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["Local", "local_cloud", "local_remote", "Local.get_url", "Local.get_storagepath", "docstring"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint: disable=cyclic-import,disable=abstract-method\nimport pytest\n\nfrom tests.basic_env import TestDvc\n\nfrom .base import Base\n\n\nclass Local(Base):\n    @staticmethod\n    def get_storagepath():\n        return TestDvc.mkdtemp()\n\n    @staticmethod\n    def get_url():\n        return Local.get_storagepath()\n\n\n@pytest.fixture\ndef local_cloud(make_tmp_dir):\n    ret = make_tmp_dir(\"local-cloud\")\n    ret.url = str(ret)\n    ret.config = {\"url\": ret.url}\n    return ret\n\n\n@pytest.fixture\ndef local_remote(tmp_dir, dvc, local_cloud):\n    tmp_dir.add_remote(config=local_cloud.config)\n    yield local_cloud", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/s3.py_locale_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/s3.py_locale_", "embedding": null, "metadata": {"file_path": "tests/remotes/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 118, "span_ids": ["S3.is_file", "real_s3", "S3._s3", "imports", "S3._get_storagepath", "S3.is_dir", "S3.write_text", "S3.read_text", "S3.read_bytes", "S3.should_test", "S3.exists", "S3.mkdir", "S3", "S3.write_bytes", "S3.get_url", "s3"], "tokens": 663}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import locale\nimport os\nimport uuid\n\nimport pytest\nfrom funcy import cached_property\nfrom moto import mock_s3\n\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.utils import env2bool\n\nfrom .base import Base\n\nTEST_AWS_REPO_BUCKET = os.environ.get(\"DVC_TEST_AWS_REPO_BUCKET\", \"dvc-temp\")\n\n\nclass S3(Base, CloudURLInfo):\n    @staticmethod\n    def should_test():\n        do_test = env2bool(\"DVC_TEST_AWS\", undefined=None)\n        if do_test is not None:\n            return do_test\n\n        if os.getenv(\"AWS_ACCESS_KEY_ID\") and os.getenv(\n            \"AWS_SECRET_ACCESS_KEY\"\n        ):\n            return True\n\n        return False\n\n    @staticmethod\n    def _get_storagepath():\n        return (\n            TEST_AWS_REPO_BUCKET\n            + \"/\"\n            + \"dvc_test_caches\"\n            + \"/\"\n            + str(uuid.uuid4())\n        )\n\n    @staticmethod\n    def get_url():\n        return \"s3://\" + S3._get_storagepath()\n\n    @cached_property\n    def _s3(self):\n        import boto3\n\n        return boto3.client(\"s3\")\n\n    def is_file(self):\n        from botocore.exceptions import ClientError\n\n        if self.path.endswith(\"/\"):\n            return False\n\n        try:\n            self._s3.head_object(Bucket=self.bucket, Key=self.path)\n        except ClientError as exc:\n            if exc.response[\"Error\"][\"Code\"] != \"404\":\n                raise\n            return False\n\n        return True\n\n    def is_dir(self):\n        path = (self / \"\").path\n        resp = self._s3.list_objects(Bucket=self.bucket, Prefix=path)\n        return bool(resp.get(\"Contents\"))\n\n    def exists(self):\n        return self.is_file() or self.is_dir()\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert mode == 0o777\n        assert parents\n        assert not exist_ok\n\n    def write_bytes(self, contents):\n        self._s3.put_object(\n            Bucket=self.bucket, Key=self.path, Body=contents,\n        )\n\n    def write_text(self, contents, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        self.write_bytes(contents.encode(encoding))\n\n    def read_bytes(self):\n        data = self._s3.get_object(Bucket=self.bucket, Key=self.path)\n        return data[\"Body\"].read()\n\n    def read_text(self, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        return self.read_bytes().decode(encoding)\n\n\n@pytest.fixture\ndef s3(test_config):\n    test_config.requires(\"s3\")\n    with mock_s3():\n        import boto3\n\n        boto3.client(\"s3\").create_bucket(Bucket=TEST_AWS_REPO_BUCKET)\n\n        yield S3(S3.get_url())\n\n\n@pytest.fixture\ndef real_s3(test_config):\n    test_config.requires(\"s3\")\n    if not S3.should_test():\n        pytest.skip(\"no real s3\")\n    yield S3(S3.get_url())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/ssh.py_SSHMocked.config_SSHMocked.read_text.return.self_read_bytes_decode_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/ssh.py_SSHMocked.config_SSHMocked.read_text.return.self_read_bytes_decode_", "embedding": null, "metadata": {"file_path": "tests/remotes/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 41, "end_line": 106, "span_ids": ["SSHMocked.write_bytes", "SSHMocked.exists", "SSHMocked.mkdir", "SSHMocked.is_file", "SSHMocked._ssh", "SSHMocked.config", "SSHMocked.is_dir", "SSHMocked.write_text", "SSHMocked.read_text", "SSHMocked.read_bytes"], "tokens": 428}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHMocked(Base, URLInfo):\n\n    @cached_property\n    def config(self):\n        return {\n            \"url\": self.url,\n            \"keyfile\": TEST_SSH_KEY_PATH,\n        }\n\n    @contextmanager\n    def _ssh(self):\n        from dvc.tree.ssh.connection import SSHConnection\n\n        conn = SSHConnection(\n            host=self.host,\n            port=self.port,\n            username=TEST_SSH_USER,\n            key_filename=TEST_SSH_KEY_PATH,\n        )\n        try:\n            yield conn\n        finally:\n            conn.close()\n\n    def is_file(self):\n        with self._ssh() as _ssh:\n            return _ssh.isfile(self.path)\n\n    def is_dir(self):\n        with self._ssh() as _ssh:\n            return _ssh.isdir(self.path)\n\n    def exists(self):\n        with self._ssh() as _ssh:\n            return _ssh.exists(self.path)\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert mode == 0o777\n        assert parents\n        assert not exist_ok\n\n        with self._ssh() as _ssh:\n            _ssh.makedirs(self.path)\n\n    def write_bytes(self, contents):\n        assert isinstance(contents, bytes)\n        with self._ssh() as _ssh:\n            with _ssh.open(self.path, \"w+\") as fobj:\n                # NOTE: accepts both str and bytes\n                fobj.write(contents)\n\n    def write_text(self, contents, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        self.write_bytes(contents.encode(encoding))\n\n    def read_bytes(self):\n        with self._ssh() as _ssh:\n            # NOTE: sftp always reads in binary format\n            with _ssh.open(self.path, \"r\") as fobj:\n                return fobj.read()\n\n    def read_text(self, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        return self.read_bytes().decode(encoding)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_os_remote.return.get_remote_dvc_cloud_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_os_remote.return.get_remote_dvc_cloud_c", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["imports", "remote"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.path_info import PathInfo\nfrom dvc.remote import get_remote\nfrom dvc.tree.s3 import S3Tree\nfrom dvc.utils.fs import walk_files\n\nremotes = [pytest.lazy_fixture(fix) for fix in [\"gs\", \"s3\"]]\n\nFILE_WITH_CONTENTS = {\n    \"data1.txt\": \"\",\n    \"empty_dir/\": \"\",\n    \"empty_file\": \"\",\n    \"foo\": \"foo\",\n    \"data/alice\": \"alice\",\n    \"data/alpha\": \"alpha\",\n    \"data/subdir-file.txt\": \"subdir\",\n    \"data/subdir/1\": \"1\",\n    \"data/subdir/2\": \"2\",\n    \"data/subdir/3\": \"3\",\n    \"data/subdir/empty_dir/\": \"\",\n    \"data/subdir/empty_file\": \"\",\n}\n\n\n@pytest.fixture\ndef remote(request, dvc):\n    cloud = request.param\n    cloud.gen(FILE_WITH_CONTENTS)\n    return get_remote(dvc, **cloud.config)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/__init__.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/__init__.py__", "embedding": null, "metadata": {"file_path": "tests/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["imports", "get_gitignore_content", "to_posixpath", "cd"], "tokens": 102}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom contextlib import contextmanager\n\nfrom dvc.scm import Git\n\n\ndef get_gitignore_content():\n    with open(Git.GITIGNORE) as gitignore:\n        return gitignore.read().splitlines()\n\n\n@contextmanager\ndef cd(newdir):\n    prevdir = os.getcwd()\n    os.chdir(os.path.expanduser(newdir))\n    try:\n        yield\n    finally:\n        os.chdir(prevdir)\n\n\ndef to_posixpath(path):\n    return path.replace(\"\\\\\", \"/\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_hashlib_TestRequestHandler.translate_path.return.path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_hashlib_TestRequestHandler.translate_path.return.path", "embedding": null, "metadata": {"file_path": "tests/utils/httpd.py", "file_name": "httpd.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 46, "span_ids": ["imports", "TestRequestHandler.translate_path", "TestRequestHandler.__init__", "TestRequestHandler"], "tokens": 346}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import hashlib\nimport os\nimport sys\nimport threading\nfrom contextlib import contextmanager\nfrom http import HTTPStatus\nfrom http.server import HTTPServer\n\nfrom RangeHTTPServer import RangeRequestHandler\n\n\nclass TestRequestHandler(RangeRequestHandler):\n    def __init__(self, *args, **kwargs):\n        # NOTE: `directory` was introduced in 3.7\n        if sys.version_info < (3, 7):\n            self.directory = kwargs.pop(\"directory\", None) or os.getcwd()\n        super().__init__(*args, **kwargs)\n\n    def translate_path(self, path):\n        import posixpath\n        import urllib\n\n        # NOTE: `directory` was introduced in 3.7\n        if sys.version_info >= (3, 7):\n            return super().translate_path(path)\n\n        path = path.split(\"?\", 1)[0]\n        path = path.split(\"#\", 1)[0]\n        # Don't forget explicit trailing slash when normalizing. Issue17324\n        trailing_slash = path.rstrip().endswith(\"/\")\n        try:\n            path = urllib.parse.unquote(path, errors=\"surrogatepass\")\n        except UnicodeDecodeError:\n            path = urllib.parse.unquote(path)\n        path = posixpath.normpath(path)\n        words = path.split(\"/\")\n        words = filter(None, words)\n        path = self.directory\n        for word in words:\n            if os.path.dirname(word) or word in (os.curdir, os.pardir):\n                # Ignore components that are not a simple file/directory name\n                continue\n            path = os.path.join(path, word)\n        if trailing_slash:\n            path += \"/\"\n        return path", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_TestRequestHandler.end_headers_TestRequestHandler.end_headers.RangeRequestHandler_end_h": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_TestRequestHandler.end_headers_TestRequestHandler.end_headers.RangeRequestHandler_end_h", "embedding": null, "metadata": {"file_path": "tests/utils/httpd.py", "file_name": "httpd.py", "file_type": "text/x-python", "category": "implementation", "start_line": 47, "end_line": 62, "span_ids": ["TestRequestHandler.end_headers"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRequestHandler(RangeRequestHandler):\n\n    def end_headers(self):\n        # RangeRequestHandler only sends Accept-Ranges header if Range header\n        # is present, see https://github.com/danvk/RangeHTTPServer/issues/23\n        if not self.headers.get(\"Range\"):\n            self.send_header(\"Accept-Ranges\", \"bytes\")\n\n        # Add a checksum header\n        file = self.translate_path(self.path)\n\n        if not os.path.isdir(file) and os.path.exists(file):\n            with open(file) as fd:\n                encoded_text = fd.read().encode(\"utf8\")\n                checksum = hashlib.md5(encoded_text).hexdigest()\n                self.send_header(\"Content-MD5\", checksum)\n\n        RangeRequestHandler.end_headers(self)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_TestRequestHandler._chunks_TestRequestHandler.do_POST.self_end_headers_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_TestRequestHandler._chunks_TestRequestHandler.do_POST.self_end_headers_", "embedding": null, "metadata": {"file_path": "tests/utils/httpd.py", "file_name": "httpd.py", "file_type": "text/x-python", "category": "implementation", "start_line": 64, "end_line": 89, "span_ids": ["TestRequestHandler.do_POST", "TestRequestHandler._chunks"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestRequestHandler(RangeRequestHandler):\n\n    def _chunks(self):\n        while True:\n            data = self.rfile.readline(65537)\n            chunk_size = int(data[:-2], 16)\n            if chunk_size == 0:\n                return\n            data = self.rfile.read(chunk_size)\n            yield data\n            self.rfile.read(2)\n\n    def do_POST(self):\n        chunked = self.headers.get(\"Transfer-Encoding\", \"\") == \"chunked\"\n        path = self.translate_path(self.path)\n        try:\n            os.makedirs(os.path.dirname(path), exist_ok=True)\n            with open(path, \"wb\") as fd:\n                if chunked:\n                    for chunk in self._chunks():\n                        fd.write(chunk)\n                else:\n                    size = int(self.headers.get(\"Content-Length\", 0))\n                    fd.write(self.rfile.read(size))\n        except OSError as e:\n            self.send_error(HTTPStatus.INTERNAL_SERVER_ERROR, str(e))\n        self.send_response(HTTPStatus.OK)\n        self.end_headers()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py__DVC_command_line_inter__find_parser.for_action_in_actions_.for_subparser_in_action_c._find_parser_subparser_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py__DVC_command_line_inter__find_parser.for_action_in_actions_.for_subparser_in_action_c._find_parser_subparser_c", "embedding": null, "metadata": {"file_path": "dvc/cli.py", "file_name": "cli.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 100, "span_ids": ["_find_parser", "docstring"], "tokens": 391}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"DVC command line interface\"\"\"\nimport argparse\nimport logging\nimport os\nimport sys\n\nfrom .command import (\n    add,\n    cache,\n    check_ignore,\n    checkout,\n    commit,\n    completion,\n    config,\n    daemon,\n    dag,\n    data_sync,\n    destroy,\n    diff,\n    experiments,\n    freeze,\n    gc,\n    get,\n    get_url,\n    git_hook,\n    imp,\n    imp_url,\n    init,\n    install,\n    ls,\n    metrics,\n    move,\n    params,\n    plots,\n    remote,\n    remove,\n    repro,\n    root,\n    run,\n    unprotect,\n    update,\n    version,\n)\nfrom .command.base import fix_subparsers\nfrom .exceptions import DvcParserError\n\nlogger = logging.getLogger(__name__)\n\nCOMMANDS = [\n    init,\n    get,\n    get_url,\n    destroy,\n    add,\n    remove,\n    move,\n    unprotect,\n    run,\n    repro,\n    data_sync,\n    gc,\n    imp,\n    imp_url,\n    config,\n    checkout,\n    remote,\n    cache,\n    metrics,\n    params,\n    install,\n    root,\n    ls,\n    freeze,\n    dag,\n    daemon,\n    commit,\n    completion,\n    diff,\n    version,\n    update,\n    git_hook,\n    plots,\n    experiments,\n    check_ignore,\n]\n\n\ndef _find_parser(parser, cmd_cls):\n    defaults = parser._defaults  # pylint: disable=protected-access\n    if not cmd_cls or cmd_cls == defaults.get(\"func\"):\n        parser.print_help()\n        raise DvcParserError()\n\n    actions = parser._actions  # pylint: disable=protected-access\n    for action in actions:\n        if not isinstance(action.choices, dict):\n            # NOTE: we are only interested in subparsers\n            continue\n        for subparser in action.choices.values():\n            _find_parser(subparser, cmd_cls)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/azure.py__pylint_disable_abstract_Azure.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/azure.py__pylint_disable_abstract_Azure.pass", "embedding": null, "metadata": {"file_path": "tests/remotes/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 22, "span_ids": ["Azure", "docstring"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint:disable=abstract-method\n\nimport uuid\n\nimport pytest\n\nfrom dvc.path_info import CloudURLInfo\n\nfrom .base import Base\n\nTEST_AZURE_CONTAINER = \"tests\"\nTEST_AZURE_CONNECTION_STRING = (\n    \"DefaultEndpointsProtocol=http;\"\n    \"AccountName=devstoreaccount1;\"\n    \"AccountKey=Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSR\"\n    \"Z6IFsuFq2UVErCz4I6tq/K1SZFPTOtr/KBHBeksoGMGw==;\"\n    \"BlobEndpoint=http://127.0.0.1:{port}/devstoreaccount1;\"\n)\n\n\nclass Azure(Base, CloudURLInfo):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/azure.py_azure_server_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/azure.py_azure_server_", "embedding": null, "metadata": {"file_path": "tests/remotes/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 25, "end_line": 64, "span_ids": ["azure", "azure_server"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture(scope=\"session\")\ndef azure_server(test_config, docker_compose, docker_services):\n    test_config.requires(\"azure\")\n\n    from azure.core.exceptions import (  # pylint: disable=no-name-in-module\n        AzureError,\n    )\n    from azure.storage.blob import (  # pylint: disable=no-name-in-module\n        BlobServiceClient,\n    )\n\n    port = docker_services.port_for(\"azurite\", 10000)\n    connection_string = TEST_AZURE_CONNECTION_STRING.format(port=port)\n\n    def _check():\n        try:\n            BlobServiceClient.from_connection_string(\n                connection_string\n            ).list_containers()\n            return True\n        except AzureError:\n            return False\n\n    docker_services.wait_until_responsive(\n        timeout=60.0, pause=0.1, check=_check\n    )\n\n    return connection_string\n\n\n@pytest.fixture\ndef azure(azure_server):\n    url = f\"azure://{TEST_AZURE_CONTAINER}/{uuid.uuid4()}\"\n    ret = Azure(url)\n    ret.config = {\n        \"url\": url,\n        \"connection_string\": azure_server,\n    }\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_azure.py_from_dvc_path_info_import_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_azure.py_from_dvc_path_info_import_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_azure.py", "file_name": "test_azure.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 45, "span_ids": ["test_init", "imports", "test_get_file_hash", "test_init_env_var"], "tokens": 395}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.path_info import PathInfo\nfrom dvc.tree.azure import AzureTree\n\ncontainer_name = \"container-name\"\nconnection_string = (\n    \"DefaultEndpointsProtocol=http;AccountName=devstoreaccount1;\"\n    \"AccountKey=Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSRZ6IFsu\"\n    \"Fq2UVErCz4I6tq/K1SZFPTOtr/KBHBeksoGMGw==;\"\n    \"BlobEndpoint=http://127.0.0.1:10000/devstoreaccount1;\"\n)\n\n\ndef test_init_env_var(monkeypatch, dvc):\n    monkeypatch.setenv(\"AZURE_STORAGE_CONTAINER_NAME\", container_name)\n    monkeypatch.setenv(\"AZURE_STORAGE_CONNECTION_STRING\", connection_string)\n\n    config = {\"url\": \"azure://\"}\n    tree = AzureTree(dvc, config)\n    assert tree.path_info == \"azure://\" + container_name\n    assert tree._conn_str == connection_string\n\n\ndef test_init(dvc):\n    prefix = \"some/prefix\"\n    url = f\"azure://{container_name}/{prefix}\"\n    config = {\"url\": url, \"connection_string\": connection_string}\n    tree = AzureTree(dvc, config)\n    assert tree.path_info == url\n    assert tree._conn_str == connection_string\n\n\ndef test_get_file_hash(tmp_dir, azure):\n    tmp_dir.gen(\"foo\", \"foo\")\n\n    tree = AzureTree(None, azure.config)\n    to_info = azure\n    tree.upload(PathInfo(\"foo\"), to_info)\n    assert tree.exists(to_info)\n    hash_info = tree.get_file_hash(to_info)\n    assert hash_info.name == \"etag\"\n    hash_ = hash_info.value\n    assert hash_\n    assert isinstance(hash_, str)\n    assert hash_.strip(\"'\").strip('\"') == hash_", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_ignore.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_ignore.py_os_", "embedding": null, "metadata": {"file_path": "tests/unit/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 210, "span_ids": ["imports", "mock_dvcignore", "test_should_ignore_dir"], "tokens": 268}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\nfrom mock import MagicMock, mock_open, patch\n\nfrom dvc.ignore import DvcIgnorePatterns\n\n\ndef mock_dvcignore(dvcignore_path, patterns):\n    tree = MagicMock()\n    with patch.object(tree, \"open\", mock_open(read_data=\"\\n\".join(patterns))):\n        ignore_patterns = DvcIgnorePatterns.from_files(dvcignore_path, tree)\n\n    return ignore_patterns\n\n\n@pytest.mark.parametrize(\"sub_dir\", [\"\", \"dir\"])\n@pytest.mark.parametrize(\"omit_dir\", [\".git\", \".hg\", \".dvc\"])\ndef test_should_ignore_dir(omit_dir, sub_dir):\n    root = os.path.join(os.path.sep, \"walk\", \"dir\", \"root\")\n    ignore = DvcIgnorePatterns([\".git/\", \".hg/\", \".dvc/\"], root)\n\n    dirs = [omit_dir, \"dir1\", \"dir2\"]\n    files = [omit_dir, \"file1\", \"file2\"]\n\n    if sub_dir:\n        current = os.path.join(root, sub_dir)\n    else:\n        current = root\n\n    new_dirs, new_files = ignore(current, dirs, files)\n\n    assert set(new_dirs) == {\"dir1\", \"dir2\"}\n    assert set(new_files) == {\"file1\", \"file2\", omit_dir}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_os_get_url.with__make_repo_repo_rev.return.cloud_get_url_for_remote_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_os_get_url.with__make_repo_repo_rev.return.cloud_get_url_for_remote_", "embedding": null, "metadata": {"file_path": "dvc/api.py", "file_name": "api.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 38, "span_ids": ["imports", "get_url"], "tokens": 290}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom contextlib import _GeneratorContextManager as GCM\nfrom contextlib import contextmanager\n\nfrom funcy import reraise\n\nfrom dvc.exceptions import (\n    NotDvcRepoError,\n    OutputNotFoundError,\n    PathMissingError,\n)\nfrom dvc.external_repo import external_repo\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\n\n\ndef get_url(path, repo=None, rev=None, remote=None):\n    \"\"\"\n    Returns the URL to the storage location of a data file or directory tracked\n    in a DVC repo. For Git repos, HEAD is used unless a rev argument is\n    supplied. The default remote is tried unless a remote argument is supplied.\n\n    Raises OutputNotFoundError if the file is not tracked by DVC.\n\n    NOTE: This function does not check for the actual existence of the file or\n    directory in the remote storage.\n    \"\"\"\n    with _make_repo(repo, rev=rev) as _repo:\n        path_info = PathInfo(_repo.root_dir) / path\n        with reraise(FileNotFoundError, PathMissingError(path, repo)):\n            metadata = _repo.repo_tree.metadata(path_info)\n\n        if not metadata.is_dvc:\n            raise OutputNotFoundError(path, repo)\n\n        cloud = metadata.repo.cloud\n        hash_info = _repo.repo_tree.get_hash(path_info)\n        return cloud.get_url_for(remote, checksum=hash_info.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_read__make_repo.with_external_repo_url_re.yield_repo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_read__make_repo.with_external_repo_url_re.yield_repo", "embedding": null, "metadata": {"file_path": "dvc/api.py", "file_name": "api.py", "file_type": "text/x-python", "category": "implementation", "start_line": 88, "end_line": 110, "span_ids": ["read", "_make_repo"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def read(path, repo=None, rev=None, remote=None, mode=\"r\", encoding=None):\n    \"\"\"\n    Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD\n    is used unless a rev argument is supplied. The default remote is tried\n    unless a remote argument is supplied.\n    \"\"\"\n    with open(\n        path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding\n    ) as fd:\n        return fd.read()\n\n\n@contextmanager\ndef _make_repo(repo_url=None, rev=None):\n    repo_url = repo_url or os.getcwd()\n    if rev is None and os.path.exists(repo_url):\n        try:\n            yield Repo(repo_url, subrepos=True)\n            return\n        except NotDvcRepoError:\n            pass  # fallthrough to external_repo\n    with external_repo(url=repo_url, rev=rev) as repo:\n        yield repo", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_make_checkpoint_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/api.py_make_checkpoint_", "embedding": null, "metadata": {"file_path": "dvc/api.py", "file_name": "api.py", "file_type": "text/x-python", "category": "implementation", "start_line": 113, "end_line": 143, "span_ids": ["make_checkpoint"], "tokens": 228}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def make_checkpoint():\n    \"\"\"\n    Signal DVC to create a checkpoint experiment.\n\n    If the current process is being run from DVC, this function will block\n    until DVC has finished creating the checkpoint. Otherwise, this function\n    will return immediately.\n    \"\"\"\n    import builtins\n    from time import sleep\n\n    from dvc.env import DVC_CHECKPOINT, DVC_ROOT\n    from dvc.stage.run import CHECKPOINT_SIGNAL_FILE\n\n    if os.getenv(DVC_CHECKPOINT) is None:\n        return\n\n    root_dir = os.getenv(DVC_ROOT, Repo.find_root())\n    signal_file = os.path.join(\n        root_dir, Repo.DVC_DIR, \"tmp\", CHECKPOINT_SIGNAL_FILE\n    )\n\n    with builtins.open(signal_file, \"w\") as fobj:\n        # NOTE: force flushing/writing empty file to disk, otherwise when\n        # run in certain contexts (pytest) file may not actually be written\n        fobj.write(\"\")\n        fobj.flush()\n        os.fsync(fobj.fileno())\n    while os.path.exists(signal_file):\n        sleep(1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py_NamedCacheItem_NamedCacheItem.update.for_checksum_child_item_.self_children_checksum_u": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py_NamedCacheItem_NamedCacheItem.update.for_checksum_child_item_.self_children_checksum_u", "embedding": null, "metadata": {"file_path": "dvc/cache/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 86, "end_line": 113, "span_ids": ["NamedCacheItem.child_keys", "NamedCacheItem", "NamedCacheItem.update", "NamedCacheItem.__eq__", "NamedCacheItem.__init__", "NamedCacheItem.child_names", "NamedCacheItem.add"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class NamedCacheItem:\n    def __init__(self):\n        self.names = set()\n        self.children = defaultdict(NamedCacheItem)\n\n    def __eq__(self, other):\n        return self.names == other.names and self.children == other.children\n\n    def child_keys(self):\n        for key, child in self.children.items():\n            yield key\n            yield from child.child_keys()\n\n    def child_names(self):\n        for key, child in self.children.items():\n            yield key, child.names\n            yield from child.child_names()\n\n    def add(self, checksum, item):\n        self.children[checksum].update(item)\n\n    def update(self, item, suffix=\"\"):\n        if suffix:\n            self.names.update(n + suffix for n in item.names)\n        else:\n            self.names.update(item.names)\n        for checksum, child_item in item.children.items():\n            self.children[checksum].update(child_item)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py_NamedCache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py_NamedCache_", "embedding": null, "metadata": {"file_path": "dvc/cache/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 116, "end_line": 180, "span_ids": ["NamedCache.add_child_cache", "NamedCache.scheme_keys", "NamedCache.update", "NamedCache.child_keys", "NamedCache", "NamedCache.dir_keys", "NamedCache.__getitem__", "NamedCache.add", "NamedCache.__init__", "NamedCache.add_external", "NamedCache.make", "NamedCache.scheme_names"], "tokens": 483}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class NamedCache:\n    # pylint: disable=protected-access\n    def __init__(self):\n        self._items = defaultdict(lambda: defaultdict(NamedCacheItem))\n        self.external = defaultdict(set)\n\n    @classmethod\n    def make(cls, scheme, checksum, name):\n        cache = cls()\n        cache.add(scheme, checksum, name)\n        return cache\n\n    def __getitem__(self, key):\n        return self._items[key]\n\n    def add(self, scheme, checksum, name):\n        \"\"\"Add a mapped name for the specified checksum.\"\"\"\n        self._items[scheme][checksum].names.add(name)\n\n    def add_child_cache(self, checksum, cache, suffix=\"\"):\n        \"\"\"Add/update child cache for the specified checksum.\"\"\"\n        for scheme, src in cache._items.items():\n            dst = self._items[scheme][checksum].children\n            for child_checksum, item in src.items():\n                dst[child_checksum].update(item, suffix=suffix)\n\n        for repo_pair, files in cache.external.items():\n            self.external[repo_pair].update(files)\n\n    def add_external(self, url, rev, path):\n        self.external[url, rev].add(path)\n\n    def update(self, cache, suffix=\"\"):\n        for scheme, src in cache._items.items():\n            dst = self._items[scheme]\n            for checksum, item in src.items():\n                dst[checksum].update(item, suffix=suffix)\n\n        for repo_pair, files in cache.external.items():\n            self.external[repo_pair].update(files)\n\n    def scheme_keys(self, scheme):\n        \"\"\"Iterate over a flat list of all keys for the specified scheme,\n        including children.\n        \"\"\"\n        for key, item in self._items[scheme].items():\n            yield key\n            yield from item.child_keys()\n\n    def scheme_names(self, scheme):\n        \"\"\"Iterate over a flat list of checksum, names items for the specified\n        scheme, including children.\n        \"\"\"\n        for key, item in self._items[scheme].items():\n            yield key, item.names\n            yield from item.child_names()\n\n    def dir_keys(self, scheme):\n        return (\n            key for key, item in self._items[scheme].items() if item.children\n        )\n\n    def child_keys(self, scheme, checksum):\n        return self._items[scheme][checksum].child_keys()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache_CloudCache.get_dir_cache.return.dir_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache_CloudCache.get_dir_cache.return.dir_info", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 43, "end_line": 72, "span_ids": ["CloudCache", "CloudCache.__init__", "CloudCache.get_dir_cache"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n    \"\"\"Cloud cache class.\"\"\"\n\n    DEFAULT_CACHE_TYPES = [\"copy\"]\n    CACHE_MODE: Optional[int] = None\n\n    def __init__(self, tree):\n        self.tree = tree\n        self.repo = tree.repo\n\n        self.cache_types = tree.config.get(\"type\") or copy(\n            self.DEFAULT_CACHE_TYPES\n        )\n        self.cache_type_confirmed = False\n        self._dir_info = {}\n\n    def get_dir_cache(self, hash_info):\n        assert hash_info\n\n        dir_info = self._dir_info.get(hash_info.value)\n        if dir_info:\n            return dir_info\n\n        try:\n            dir_info = self.load_dir_cache(hash_info)\n        except DirCacheError:\n            dir_info = DirInfo()\n\n        self._dir_info[hash_info.value] = dir_info\n        return dir_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.changed_CloudCache.changed.return.False": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.changed_CloudCache.changed.return.False", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 92, "end_line": 138, "span_ids": ["CloudCache.changed"], "tokens": 310}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def changed(self, path_info, hash_info):\n        \"\"\"Checks if data has changed.\n\n        A file is considered changed if:\n            - It doesn't exist on the working directory (was unlinked)\n            - Hash value is not computed (saving a new file)\n            - The hash value stored is different from the given one\n            - There's no file in the cache\n\n        Args:\n            path_info: dict with path information.\n            hash: expected hash value for this data.\n\n        Returns:\n            bool: True if data has changed, False otherwise.\n        \"\"\"\n\n        logger.trace(\n            \"checking if '%s'('%s') has changed.\", path_info, hash_info\n        )\n\n        if not self.tree.exists(path_info):\n            logger.debug(\"'%s' doesn't exist.\", path_info)\n            return True\n\n        if not hash_info:\n            logger.debug(\"hash value for '%s' is missing.\", path_info)\n            return True\n\n        if self.changed_cache(hash_info):\n            logger.debug(\n                \"cache for '%s'('%s') has changed.\", path_info, hash_info\n            )\n            return True\n\n        actual = self.tree.get_hash(path_info)\n        if hash_info != actual:\n            logger.debug(\n                \"hash value '%s' for '%s' has changed (actual '%s').\",\n                hash_info,\n                actual,\n                path_info,\n            )\n            return True\n\n        logger.trace(\"'%s' hasn't changed.\", path_info)\n        return False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.link_CloudCache._verify_link.self.cache_type_confirmed.True": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.link_CloudCache._verify_link.self.cache_type_confirmed.True", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 159, "end_line": 178, "span_ids": ["CloudCache.link", "CloudCache._verify_link", "CloudCache._link"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def link(self, from_info, to_info):\n        self._link(from_info, to_info, self.cache_types)\n\n    def _link(self, from_info, to_info, link_types):\n        assert self.tree.isfile(from_info)\n\n        self.tree.makedirs(to_info.parent)\n\n        self._try_links(from_info, to_info, link_types)\n\n    def _verify_link(self, path_info, link_type):\n        if self.cache_type_confirmed:\n            return\n\n        is_link = getattr(self.tree, f\"is_{link_type}\", None)\n        if is_link and not is_link(path_info):\n            self.tree.remove(path_info)\n            raise DvcException(f\"failed to verify {link_type}\")\n\n        self.cache_type_confirmed = True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._try_links_CloudCache._do_link.logger_debug_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._try_links_CloudCache._do_link.logger_debug_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 181, "end_line": 206, "span_ids": ["CloudCache._try_links", "CloudCache._do_link"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    @slow_link_guard\n    def _try_links(self, from_info, to_info, link_types):\n        while link_types:\n            link_method = getattr(self.tree, link_types[0])\n            try:\n                self._do_link(from_info, to_info, link_method)\n                self._verify_link(to_info, link_types[0])\n                return\n\n            except DvcException as exc:\n                logger.debug(\n                    \"Cache type '%s' is not supported: %s\", link_types[0], exc\n                )\n                del link_types[0]\n\n        raise CacheLinkError([to_info])\n\n    def _do_link(self, from_info, to_info, link_method):\n        if self.tree.exists(to_info):\n            raise DvcException(f\"Link '{to_info}' already exists!\")\n\n        link_method(from_info, to_info)\n\n        logger.debug(\n            \"Created '%s': %s -> %s\", self.cache_types[0], from_info, to_info,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._save_file_CloudCache._save_file.self_tree_state_save_cach": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._save_file_CloudCache._save_file.self_tree_state_save_cach", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 188, "end_line": 224, "span_ids": ["CloudCache._save_file"], "tokens": 334}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _save_file(self, path_info, tree, hash_info, save_link=True, **kwargs):\n        assert hash_info\n\n        cache_info = self.tree.hash_to_path_info(hash_info.value)\n        if tree == self.tree:\n            if self.changed_cache(hash_info):\n                self.tree.move(path_info, cache_info, mode=self.CACHE_MODE)\n                self.link(cache_info, path_info)\n            elif self.tree.iscopy(path_info) and self._cache_is_copy(\n                path_info\n            ):\n                # Default relink procedure involves unneeded copy\n                self.tree.unprotect(path_info)\n            else:\n                self.tree.remove(path_info)\n                self.link(cache_info, path_info)\n\n            if save_link:\n                self.tree.state.save_link(path_info)\n            # we need to update path and cache, since in case of reflink,\n            # or copy cache type moving original file results in updates on\n            # next executed command, which causes md5 recalculation\n            self.tree.state.save(path_info, hash_info)\n        else:\n            if self.changed_cache(hash_info):\n                with tree.open(path_info, mode=\"rb\") as fobj:\n                    # if tree has fetch enabled, DVC out will be fetched on\n                    # open and we do not need to read/copy any data\n                    if not (\n                        tree.isdvc(path_info, strict=False) and tree.fetch\n                    ):\n                        self.tree.copy_fobj(fobj, cache_info)\n                callback = kwargs.get(\"download_callback\")\n                if callback:\n                    callback(1)\n\n        self.tree.state.save(cache_info, hash_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._cache_is_copy_CloudCache._cache_is_copy.return.self_cache_types_0_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._cache_is_copy_CloudCache._cache_is_copy.return.self_cache_types_0_c", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 245, "end_line": 265, "span_ids": ["CloudCache._cache_is_copy"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _cache_is_copy(self, path_info):\n        \"\"\"Checks whether cache uses copies.\"\"\"\n        if self.cache_type_confirmed:\n            return self.cache_types[0] == \"copy\"\n\n        if set(self.cache_types) <= {\"copy\"}:\n            return True\n\n        workspace_file = path_info.with_name(\".\" + uuid())\n        test_cache_file = self.tree.path_info / \".cache_type_test_file\"\n        if not self.tree.exists(test_cache_file):\n            with self.tree.open(test_cache_file, \"wb\") as fobj:\n                fobj.write(bytes(1))\n        try:\n            self.link(test_cache_file, workspace_file)\n        finally:\n            self.tree.remove(workspace_file)\n            self.tree.remove(test_cache_file)\n\n        self.cache_type_confirmed = True\n        return self.cache_types[0] == \"copy\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._get_dir_info_hash_CloudCache._get_dir_info_hash.return.hash_info_to_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._get_dir_info_hash_CloudCache._get_dir_info_hash.return.hash_info_to_info", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 248, "end_line": 267, "span_ids": ["CloudCache._get_dir_info_hash"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _get_dir_info_hash(self, dir_info):\n        import tempfile\n\n        from dvc.path_info import PathInfo\n        from dvc.utils import tmp_fname\n\n        tmp = tempfile.NamedTemporaryFile(delete=False).name\n        with open(tmp, \"w+\") as fobj:\n            json.dump(dir_info.to_list(), fobj, sort_keys=True)\n\n        from_info = PathInfo(tmp)\n        to_info = self.tree.path_info / tmp_fname(\"\")\n        self.tree.upload(from_info, to_info, no_progress_bar=True)\n\n        hash_info = self.tree.get_file_hash(to_info)\n        hash_info.value += self.tree.CHECKSUM_DIR_SUFFIX\n        hash_info.dir_info = dir_info\n        hash_info.nfiles = dir_info.nfiles\n\n        return hash_info, to_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.save_dir_info_CloudCache.save_dir_info.return.hi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.save_dir_info_CloudCache.save_dir_info.return.hi", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 269, "end_line": 286, "span_ids": ["CloudCache.save_dir_info"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    @use_state\n    def save_dir_info(self, dir_info, hash_info=None):\n        if (\n            hash_info\n            and hash_info.name == self.tree.PARAM_CHECKSUM\n            and not self.changed_cache_file(hash_info)\n        ):\n            return hash_info\n\n        hi, tmp_info = self._get_dir_info_hash(dir_info)\n        new_info = self.tree.hash_to_path_info(hi.value)\n        if self.changed_cache_file(hi):\n            self.tree.makedirs(new_info.parent)\n            self.tree.move(tmp_info, new_info, mode=self.CACHE_MODE)\n\n        self.tree.state.save(new_info, hi)\n\n        return hi", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._save_dir_CloudCache._save_dir.self_tree_state_save_cach": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._save_dir_CloudCache._save_dir.self_tree_state_save_cach", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 288, "end_line": 307, "span_ids": ["CloudCache._save_dir"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _save_dir(self, path_info, tree, hash_info, save_link=True, **kwargs):\n        if not hash_info.dir_info:\n            hash_info.dir_info = tree.cache.get_dir_cache(hash_info)\n        hi = self.save_dir_info(hash_info.dir_info, hash_info)\n        for entry_info, entry_hash in Tqdm(\n            hi.dir_info.items(path_info),\n            desc=\"Saving \" + path_info.name,\n            unit=\"file\",\n        ):\n            self._save_file(\n                entry_info, tree, entry_hash, save_link=False, **kwargs\n            )\n\n        if save_link:\n            self.tree.state.save_link(path_info)\n        if self.tree.exists(path_info):\n            self.tree.state.save(path_info, hi)\n\n        cache_info = self.tree.hash_to_path_info(hi.value)\n        self.tree.state.save(cache_info, hi)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.save_CloudCache.hash_to_path.return.self_tree_hash_to_path_in": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.save_CloudCache.hash_to_path.return.self_tree_hash_to_path_in", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 333, "end_line": 355, "span_ids": ["CloudCache._save", "CloudCache.save", "CloudCache.hash_to_path"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    @use_state\n    def save(self, path_info, tree, hash_info, save_link=True, **kwargs):\n        if path_info.scheme != self.tree.scheme:\n            raise RemoteActionNotImplemented(\n                f\"save {path_info.scheme} -> {self.tree.scheme}\",\n                self.tree.scheme,\n            )\n\n        self._save(path_info, tree, hash_info, save_link, **kwargs)\n\n    def _save(self, path_info, tree, hash_info, save_link=True, **kwargs):\n        to_info = self.tree.hash_to_path_info(hash_info.value)\n        logger.debug(\"Saving '%s' to '%s'.\", path_info, to_info)\n\n        if tree.isdir(path_info):\n            self._save_dir(path_info, tree, hash_info, save_link, **kwargs)\n        else:\n            self._save_file(path_info, tree, hash_info, save_link, **kwargs)\n\n    # Override to return path as a string instead of PathInfo for clouds\n    # which support string paths (see local)\n    def hash_to_path(self, hash_):\n        return self.tree.hash_to_path_info(hash_)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.changed_cache_file_CloudCache.changed_cache_file.return.True": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.changed_cache_file_CloudCache.changed_cache_file.return.True", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 333, "end_line": 375, "span_ids": ["CloudCache.changed_cache_file"], "tokens": 293}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def changed_cache_file(self, hash_info):\n        \"\"\"Compare the given hash with the (corresponding) actual one.\n\n        - Use `State` as a cache for computed hashes\n            + The entries are invalidated by taking into account the following:\n                * mtime\n                * inode\n                * size\n                * hash\n\n        - Remove the file from cache if it doesn't match the actual hash\n        \"\"\"\n        # Prefer string path over PathInfo when possible due to performance\n        cache_info = self.hash_to_path(hash_info.value)\n        if self.tree.is_protected(cache_info):\n            logger.trace(\n                \"Assuming '%s' is unchanged since it is read-only\", cache_info\n            )\n            return False\n\n        actual = self.tree.get_hash(cache_info)\n\n        logger.trace(\n            \"cache '%s' expected '%s' actual '%s'\",\n            cache_info,\n            hash_info,\n            actual,\n        )\n\n        if not hash_info or not actual:\n            return True\n\n        if actual.value.split(\".\")[0] == hash_info.value.split(\".\")[0]:\n            # making cache file read-only so we don't need to check it\n            # next time\n            self.tree.protect(cache_info)\n            return False\n\n        if self.tree.exists(cache_info):\n            logger.warning(\"corrupted cache file '%s'.\", cache_info)\n            self.tree.remove(cache_info)\n\n        return True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._checkout_file_CloudCache._checkout_file.return.added_modified_and_not_r": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._checkout_file_CloudCache._checkout_file.return.added_modified_and_not_r", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 422, "end_line": 439, "span_ids": ["CloudCache._checkout_file"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _checkout_file(\n        self, path_info, hash_info, force, progress_callback=None, relink=False\n    ):\n        \"\"\"The file is changed we need to checkout a new copy\"\"\"\n        added, modified = True, False\n        cache_info = self.tree.hash_to_path_info(hash_info.value)\n        if self.tree.exists(path_info):\n            logger.debug(\"data '%s' will be replaced.\", path_info)\n            self.safe_remove(path_info, force=force)\n            added, modified = False, True\n\n        self.link(cache_info, path_info)\n        self.tree.state.save_link(path_info)\n        self.tree.state.save(path_info, hash_info)\n        if progress_callback:\n            progress_callback(str(path_info))\n\n        return added, modified and not relink", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._checkout_dir_CloudCache._remove_redundant_files.return.bool_redundant_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._checkout_dir_CloudCache._remove_redundant_files.return.bool_redundant_files_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 441, "end_line": 496, "span_ids": ["CloudCache._remove_redundant_files", "CloudCache._checkout_dir"], "tokens": 391}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _checkout_dir(\n        self,\n        path_info,\n        hash_info,\n        force,\n        progress_callback=None,\n        relink=False,\n        filter_info=None,\n    ):\n        added, modified = False, False\n        # Create dir separately so that dir is created\n        # even if there are no files in it\n        if not self.tree.exists(path_info):\n            added = True\n            self.tree.makedirs(path_info)\n\n        dir_info = self.get_dir_cache(hash_info)\n\n        logger.debug(\"Linking directory '%s'.\", path_info)\n\n        for entry_info, entry_hash_info in dir_info.items(path_info):\n            entry_cache_info = self.tree.hash_to_path_info(\n                entry_hash_info.value\n            )\n\n            if filter_info and not entry_info.isin_or_eq(filter_info):\n                continue\n\n            if relink or self.changed(entry_info, entry_hash_info):\n                modified = True\n                self.safe_remove(entry_info, force=force)\n                self.link(entry_cache_info, entry_info)\n                self.tree.state.save(entry_info, entry_hash_info)\n            if progress_callback:\n                progress_callback(str(entry_info))\n\n        modified = (\n            self._remove_redundant_files(path_info, dir_info, force)\n            or modified\n        )\n\n        self.tree.state.save_link(path_info)\n        self.tree.state.save(path_info, hash_info)\n\n        # relink is not modified, assume it as nochange\n        return added, not added and modified and not relink\n\n    def _remove_redundant_files(self, path_info, dir_info, force):\n        existing_files = set(self.tree.walk_files(path_info))\n\n        needed_files = {info for info, _ in dir_info.items(path_info)}\n        redundant_files = existing_files - needed_files\n        for path in redundant_files:\n            self.safe_remove(path, force)\n\n        return bool(redundant_files)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.checkout_CloudCache.checkout.return.self__checkout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.checkout_CloudCache.checkout.return.self__checkout_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 498, "end_line": 562, "span_ids": ["CloudCache.checkout"], "tokens": 356}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    @use_state\n    def checkout(\n        self,\n        path_info,\n        hash_info,\n        force=False,\n        progress_callback=None,\n        relink=False,\n        filter_info=None,\n        quiet=False,\n    ):\n        if path_info.scheme not in [\"local\", self.tree.scheme]:\n            raise NotImplementedError\n\n        failed = None\n        skip = False\n        if not hash_info:\n            if not quiet:\n                logger.warning(\n                    \"No file hash info found for '%s'. It won't be created.\",\n                    path_info,\n                )\n            self.safe_remove(path_info, force=force)\n            failed = path_info\n\n        elif not relink and not self.changed(path_info, hash_info):\n            logger.trace(\"Data '%s' didn't change.\", path_info)\n            skip = True\n\n        elif self.changed_cache(\n            hash_info, path_info=path_info, filter_info=filter_info\n        ):\n            if not quiet:\n                logger.warning(\n                    \"Cache '%s' not found. File '%s' won't be created.\",\n                    hash_info,\n                    path_info,\n                )\n            self.safe_remove(path_info, force=force)\n            failed = path_info\n\n        if failed or skip:\n            if progress_callback:\n                progress_callback(\n                    str(path_info),\n                    self.get_files_number(\n                        self.tree.path_info, hash_info, filter_info\n                    ),\n                )\n            if failed:\n                raise CheckoutError([failed])\n            return\n\n        logger.debug(\n            \"Checking out '%s' with cache '%s'.\", path_info, hash_info\n        )\n\n        return self._checkout(\n            path_info,\n            hash_info,\n            force,\n            progress_callback,\n            relink,\n            filter_info,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py_DvcParser_VersionAction.__call__.sys_exit_0_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py_DvcParser_VersionAction.__call__.sys_exit_0_", "embedding": null, "metadata": {"file_path": "dvc/cli.py", "file_name": "cli.py", "file_type": "text/x-python", "category": "implementation", "start_line": 103, "end_line": 129, "span_ids": ["VersionAction.__call__", "DvcParser.parse_args", "DvcParser", "DvcParser.error", "VersionAction"], "tokens": 238}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcParser(argparse.ArgumentParser):\n    \"\"\"Custom parser class for dvc CLI.\"\"\"\n\n    def error(self, message, cmd_cls=None):  # pylint: disable=arguments-differ\n        logger.error(message)\n        _find_parser(self, cmd_cls)\n\n    def parse_args(self, args=None, namespace=None):\n        # NOTE: overriding to provide a more granular help message.\n        # E.g. `dvc plots diff --bad-flag` would result in a `dvc plots diff`\n        # help message instead of generic `dvc` usage.\n        args, argv = self.parse_known_args(args, namespace)\n        if argv:\n            msg = \"unrecognized arguments: %s\"\n            self.error(msg % \" \".join(argv), getattr(args, \"func\", None))\n        return args\n\n\nclass VersionAction(argparse.Action):  # pragma: no cover\n    # pylint: disable=too-few-public-methods\n    \"\"\"Shows DVC version and exits.\"\"\"\n\n    def __call__(self, parser, namespace, values, option_string=None):\n        from dvc import __version__\n\n        print(__version__)\n        sys.exit(0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py_get_parent_parser_get_parent_parser.return.parent_parser": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cli.py_get_parent_parser_get_parent_parser.return.parent_parser", "embedding": null, "metadata": {"file_path": "dvc/cli.py", "file_name": "cli.py", "file_type": "text/x-python", "category": "implementation", "start_line": 132, "end_line": 161, "span_ids": ["get_parent_parser"], "tokens": 218}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def get_parent_parser():\n    \"\"\"Create instances of a parser containing common arguments shared among\n    all the commands.\n\n    When overwriting `-q` or `-v`, you need to instantiate a new object\n    in order to prevent some weird behavior.\n    \"\"\"\n    parent_parser = argparse.ArgumentParser(add_help=False)\n\n    parent_parser.add_argument(\n        \"--cprofile\",\n        action=\"store_true\",\n        default=False,\n        help=argparse.SUPPRESS,\n    )\n    parent_parser.add_argument(\"--cprofile-dump\", help=argparse.SUPPRESS)\n\n    parent_parser.add_argument(\n        \"--pdb\", action=\"store_true\", default=False, help=argparse.SUPPRESS,\n    )\n\n    log_level_group = parent_parser.add_mutually_exclusive_group()\n    log_level_group.add_argument(\n        \"-q\", \"--quiet\", action=\"count\", default=0, help=\"Be quiet.\"\n    )\n    log_level_group.add_argument(\n        \"-v\", \"--verbose\", action=\"count\", default=0, help=\"Be verbose.\"\n    )\n\n    return parent_parser", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/check_ignore.py_argparse_CmdCheckIgnore._normal_mode.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/check_ignore.py_argparse_CmdCheckIgnore._normal_mode.return.ret", "embedding": null, "metadata": {"file_path": "dvc/command/check_ignore.py", "file_name": "check_ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["CmdCheckIgnore._check_one_file", "imports", "CmdCheckIgnore._normal_mode", "CmdCheckIgnore._interactive_mode", "CmdCheckIgnore.__init__", "CmdCheckIgnore", "CmdCheckIgnore._show_results"], "tokens": 304}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdCheckIgnore(CmdBase):\n    def __init__(self, args):\n        super().__init__(args)\n        self.ignore_filter = self.repo.tree.dvcignore\n\n    def _show_results(self, result):\n        if not result.match and not self.args.non_matching:\n            return\n\n        if self.args.details:\n            patterns = result.patterns\n            if not self.args.all:\n                patterns = patterns[-1:]\n\n            for pattern in patterns:\n                logger.info(\"{}\\t{}\".format(pattern, result.file))\n        else:\n            logger.info(result.file)\n\n    def _check_one_file(self, target):\n        result = self.ignore_filter.check_ignore(target)\n        self._show_results(result)\n        if result.match:\n            return 0\n        return 1\n\n    def _interactive_mode(self):\n        ret = 1\n        while True:\n            try:\n                target = input()\n            except (KeyboardInterrupt, EOFError):\n                break\n            if target == \"\":\n                break\n            if not self._check_one_file(target):\n                ret = 0\n        return ret\n\n    def _normal_mode(self):\n        ret = 1\n        for target in self.args.targets:\n            if not self._check_one_file(target):\n                ret = 0\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/check_ignore.py_CmdCheckIgnore._check_args_CmdCheckIgnore.run.return.self__normal_mode_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/check_ignore.py_CmdCheckIgnore._check_args_CmdCheckIgnore.run.return.self__normal_mode_", "embedding": null, "metadata": {"file_path": "dvc/command/check_ignore.py", "file_name": "check_ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 57, "end_line": 79, "span_ids": ["CmdCheckIgnore.run", "CmdCheckIgnore._check_args"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdCheckIgnore(CmdBase):\n\n    def _check_args(self):\n        if not self.args.stdin and not self.args.targets:\n            raise DvcException(\"`targets` or `--stdin` needed\")\n\n        if self.args.stdin and self.args.targets:\n            raise DvcException(\"cannot have both `targets` and `--stdin`\")\n\n        if self.args.non_matching and not self.args.details:\n            raise DvcException(\n                \"`--non-matching` is only valid with `--details`\"\n            )\n\n        if self.args.all and not self.args.details:\n            raise DvcException(\"`--all` is only valid with `--details`\")\n\n        if self.args.quiet and self.args.details:\n            raise DvcException(\"cannot use both `--details` and `--quiet`\")\n\n    def run(self):\n        self._check_args()\n        if self.args.stdin:\n            return self._interactive_mode()\n        return self._normal_mode()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/check_ignore.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/check_ignore.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/check_ignore.py", "file_name": "check_ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 82, "end_line": 127, "span_ids": ["add_parser"], "tokens": 297}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    ADD_HELP = (\n        \"Check whether files or directories are excluded due to `.dvcignore`.\"\n    )\n\n    parser = subparsers.add_parser(\n        \"check-ignore\",\n        parents=[parent_parser],\n        description=append_doc_link(ADD_HELP, \"check-ignore\"),\n        help=ADD_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    parser.add_argument(\n        \"-d\",\n        \"--details\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show the exclude patterns along with each target path.\",\n    )\n    parser.add_argument(\n        \"-a\",\n        \"--all\",\n        action=\"store_true\",\n        default=False,\n        help=\"Include the target paths which don\u2019t match any pattern \"\n        \"in the `--details` list.\",\n    )\n    parser.add_argument(\n        \"-n\",\n        \"--non-matching\",\n        action=\"store_true\",\n        default=False,\n        help=\"Include the target paths which don\u2019t match any pattern \"\n        \"in the `--details` list.\",\n    )\n    parser.add_argument(\n        \"--stdin\",\n        action=\"store_true\",\n        default=False,\n        help=\"Read paths from standard input instead of providing `targets`.\",\n    )\n    parser.add_argument(\n        \"targets\", nargs=\"*\", help=\"File or directory paths to check\",\n    ).complete = completion.FILE\n    parser.set_defaults(func=CmdCheckIgnore)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_argparse__show_md.return.table_header_rows_True_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_argparse__show_md.return.table_header_rows_True_", "embedding": null, "metadata": {"file_path": "dvc/command/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 41, "span_ids": ["imports", "_digest", "_show_md"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport json\nimport logging\nimport os\n\nimport colorama\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.exceptions import DvcException\n\nlogger = logging.getLogger(__name__)\n\n\ndef _digest(checksum):\n    if isinstance(checksum, str):\n        return checksum[0:8]\n    return \"{}..{}\".format(checksum[\"old\"][0:8], checksum[\"new\"][0:8])\n\n\ndef _show_md(diff, show_hash=False, hide_missing=False):\n    from dvc.utils.diff import table\n\n    header = [\"Status\", \"Hash\", \"Path\"] if show_hash else [\"Status\", \"Path\"]\n    rows = []\n    statuses = [\"added\", \"deleted\", \"modified\"]\n    if not hide_missing:\n        statuses.append(\"not in cache\")\n    for status in statuses:\n        entries = diff.get(status, [])\n        if not entries:\n            continue\n        for entry in entries:\n            path = entry[\"path\"]\n            if show_hash:\n                check_sum = _digest(entry.get(\"hash\", \"\"))\n                rows.append([status, check_sum, path])\n            else:\n                rows.append([status, path])\n\n    return table(header, rows, True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_CmdDiff_CmdDiff._format.return._n_n_join_groups_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_CmdDiff_CmdDiff._format.return._n_n_join_groups_", "embedding": null, "metadata": {"file_path": "dvc/command/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 43, "end_line": 126, "span_ids": ["CmdDiff._format", "CmdDiff"], "tokens": 482}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdDiff(CmdBase):\n    @staticmethod\n    def _format(diff, hide_missing=False):\n        \"\"\"\n        Given a diff structure, generate a string of paths separated\n        by new lines and grouped together by their state.\n\n        A group's header is colored to enhance readability, for example:\n\n            Added:\n                another_file.txt\n                backup.tar\n                dir/\n                dir/1\n\n        An example of a diff formatted when entries contain hash:\n\n            Added:\n                d3b07384 foo\n\n            Modified:\n                c157a790..f98bf6f1 bar\n\n        If a group has no entries, it won't be included in the result.\n\n        At the bottom, include a summary with the number of files per state.\n        \"\"\"\n\n        colors = {\n            \"added\": colorama.Fore.GREEN,\n            \"modified\": colorama.Fore.YELLOW,\n            \"deleted\": colorama.Fore.RED,\n            \"not in cache\": colorama.Fore.YELLOW,\n        }\n\n        summary = {}\n        groups = []\n\n        states = [\"added\", \"deleted\", \"modified\"]\n        if not hide_missing:\n            states.append(\"not in cache\")\n        for state in states:\n            summary[state] = 0\n            entries = diff[state]\n\n            if not entries:\n                continue\n\n            content = []\n\n            for entry in entries:\n                path = entry[\"path\"]\n                checksum = entry.get(\"hash\")\n                summary[state] += 1 if not path.endswith(os.sep) else 0\n                content.append(\n                    \"{space}{checksum}{separator}{path}\".format(\n                        space=\"    \",\n                        checksum=_digest(checksum) if checksum else \"\",\n                        separator=\"  \" if checksum else \"\",\n                        path=entry[\"path\"],\n                    )\n                )\n\n            groups.append(\n                \"{color}{header}{nc}:\\n{content}\".format(\n                    color=colors[state],\n                    header=state.capitalize(),\n                    nc=colorama.Fore.RESET,\n                    content=\"\\n\".join(content),\n                )\n            )\n\n        if not sum(summary.values()):\n            return None\n\n        fmt = (\n            \"files summary: {added} added, {deleted} deleted,\"\n            \" {modified} modified\"\n        )\n        if not hide_missing:\n            fmt += \", {not in cache} not in cache\"\n        groups.append(fmt.format_map(summary))\n\n        return \"\\n\\n\".join(groups)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_CmdDiff.run_CmdDiff.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/diff.py_CmdDiff.run_CmdDiff.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 129, "end_line": 158, "span_ids": ["CmdDiff.run"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdDiff(CmdBase):\n\n    def run(self):\n        try:\n            diff = self.repo.diff(\n                self.args.a_rev, self.args.b_rev, self.args.targets\n            )\n            show_hash = self.args.show_hash\n            hide_missing = self.args.b_rev or self.args.hide_missing\n            if hide_missing:\n                del diff[\"not in cache\"]\n\n            for key, entries in diff.items():\n                entries = sorted(entries, key=lambda entry: entry[\"path\"])\n                if not show_hash:\n                    for entry in entries:\n                        del entry[\"hash\"]\n                diff[key] = entries\n\n            if self.args.show_json:\n                logger.info(json.dumps(diff))\n            elif self.args.show_md:\n                logger.info(_show_md(diff, show_hash, hide_missing))\n            elif diff:\n                output = self._format(diff, hide_missing)\n                if output:\n                    logger.info(output)\n\n        except DvcException:\n            logger.exception(\"failed to get diff\")\n            return 1\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_argparse_logger.logging_getLogger___name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_argparse_logger.logging_getLogger___name_", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 20, "span_ids": ["imports"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport io\nimport logging\nfrom collections import OrderedDict\nfrom collections.abc import Mapping\nfrom datetime import date, datetime\nfrom itertools import groupby\nfrom typing import Dict, Iterable, Optional\n\nimport dvc.prompt as prompt\nfrom dvc.command.base import CmdBase, append_doc_link, fix_subparsers\nfrom dvc.command.metrics import DEFAULT_PRECISION\nfrom dvc.command.repro import CmdRepro\nfrom dvc.command.repro import add_arguments as add_repro_arguments\nfrom dvc.exceptions import DvcException, InvalidArgumentError\nfrom dvc.repo.experiments import Experiments\nfrom dvc.scm.git import Git\nfrom dvc.utils.flatten import flatten\n\nlogger = logging.getLogger(__name__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__filter_names__filter_names.return._join_name_for_name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__filter_names__filter_names.return._join_name_for_name_", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 23, "end_line": 65, "span_ids": ["_filter_names"], "tokens": 302}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _filter_names(\n    names: Iterable,\n    label: str,\n    include: Optional[Iterable],\n    exclude: Optional[Iterable],\n):\n    if include and exclude:\n        intersection = set(include) & set(exclude)\n        if intersection:\n            values = \", \".join(intersection)\n            raise InvalidArgumentError(\n                f\"'{values}' specified in both --include-{label} and\"\n                f\" --exclude-{label}\"\n            )\n\n    names = [tuple(name.split(\".\")) for name in names]\n\n    def _filter(filters, update_func):\n        filters = [tuple(name.split(\".\")) for name in filters]\n        for length, groups in groupby(filters, len):\n            for group in groups:\n                matches = [name for name in names if name[:length] == group]\n                if not matches:\n                    name = \".\".join(group)\n                    raise InvalidArgumentError(\n                        f\"'{name}' does not match any known {label}\"\n                    )\n                update_func({match: None for match in matches})\n\n    if include:\n        ret: OrderedDict = OrderedDict()\n        _filter(include, ret.update)\n    else:\n        ret = OrderedDict({name: None for name in names})\n\n    if exclude:\n        to_remove: Dict[str, Optional[str]] = {}\n        _filter(exclude, to_remove.update)\n        for key in to_remove:\n            if key in ret:\n                del ret[key]\n\n    return [\".\".join(name) for name in ret]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__update_names__collect_names.return.metric_names_param_names": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__update_names__collect_names.return.metric_names_param_names", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 61, "end_line": 92, "span_ids": ["_update_names", "_collect_names"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _update_names(names, items):\n    for name, item in items:\n        if isinstance(item, dict):\n            item = flatten(item)\n            names.update(item.keys())\n        else:\n            names[name] = None\n\n\ndef _collect_names(all_experiments, **kwargs):\n    metric_names = set()\n    param_names = set()\n\n    for _, experiments in all_experiments.items():\n        for exp in experiments.values():\n            _update_names(metric_names, exp.get(\"metrics\", {}).items())\n            _update_names(param_names, exp.get(\"params\", {}).items())\n\n    metric_names = _filter_names(\n        sorted(metric_names),\n        \"metrics\",\n        kwargs.get(\"include_metrics\"),\n        kwargs.get(\"exclude_metrics\"),\n    )\n    param_names = _filter_names(\n        sorted(param_names),\n        \"params\",\n        kwargs.get(\"include_params\"),\n        kwargs.get(\"exclude_params\"),\n    )\n\n    return metric_names, param_names", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__collect_rows__collect_rows.for_i_rev_exp_in_enum.yield_row_style": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__collect_rows__collect_rows.for_i_rev_exp_in_enum.yield_row_style", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 102, "end_line": 173, "span_ids": ["_collect_rows"], "tokens": 494}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _collect_rows(\n    base_rev,\n    experiments,\n    metric_names,\n    param_names,\n    precision=DEFAULT_PRECISION,\n    no_timestamp=False,\n    sort_by=None,\n    sort_order=None,\n):\n    if sort_by:\n        if sort_by in metric_names:\n            sort_type = \"metrics\"\n        elif sort_by in param_names:\n            sort_type = \"params\"\n        else:\n            raise InvalidArgumentError(f\"Unknown sort column '{sort_by}'\")\n        reverse = sort_order == \"desc\"\n        experiments = _sort_exp(experiments, sort_by, sort_type, reverse)\n\n    new_checkpoint = True\n    for i, (rev, exp) in enumerate(experiments.items()):\n        row = []\n        style = None\n        queued = \"*\" if exp.get(\"queued\", False) else \"\"\n\n        tip = exp.get(\"checkpoint_tip\")\n        parent = \"\"\n        if rev == \"baseline\":\n            if Git.is_sha(base_rev):\n                name_rev = base_rev[:7]\n            else:\n                name_rev = base_rev\n            name = exp.get(\"name\", name_rev)\n            row.append(f\"{name}\")\n            style = \"bold\"\n        else:\n            if tip:\n                parent_rev = exp.get(\"checkpoint_parent\", \"\")\n                parent_exp = experiments.get(parent_rev, {})\n                parent_tip = parent_exp.get(\"checkpoint_tip\")\n                if tip == parent_tip:\n                    if new_checkpoint:\n                        tree = \"\u2502 \u2553\"\n                    else:\n                        tree = \"\u2502 \u255f\"\n                    new_checkpoint = False\n                else:\n                    if parent_rev == base_rev:\n                        tree = \"\u251c\u2500\u2568\"\n                    else:\n                        tree = \"\u2502 \u255f\"\n                        parent = f\" ({parent_rev[:7]})\"\n                    new_checkpoint = True\n            else:\n                if i < len(experiments) - 1:\n                    tree = \"\u251c\u2500\u2500\"\n                else:\n                    tree = \"\u2514\u2500\u2500\"\n                new_checkpoint = True\n            name = exp.get(\"name\", rev[:7])\n            row.append(f\"{tree} {queued}{name}{parent}\")\n\n        if not no_timestamp:\n            row.append(_format_time(exp.get(\"timestamp\")))\n\n        _extend_row(\n            row, metric_names, exp.get(\"metrics\", {}).items(), precision\n        )\n        _extend_row(row, param_names, exp.get(\"params\", {}).items(), precision)\n\n        yield row, style", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__sort_exp__sort_exp.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__sort_exp__sort_exp.return.ret", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 172, "end_line": 194, "span_ids": ["_sort_exp"], "tokens": 175}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _sort_exp(experiments, sort_by, typ, reverse):\n    def _sort(item):\n        rev, exp = item\n        tip = exp.get(\"checkpoint_tip\")\n        if tip and tip != rev:\n            # Sort checkpoint experiments by tip commit\n            return _sort((tip, experiments[tip]))\n        for fname, item in exp.get(typ, {}).items():\n            if isinstance(item, dict):\n                item = flatten(item)\n            else:\n                item = {fname: item}\n            if sort_by in item:\n                val = item[sort_by]\n                return (val is None, val)\n        return (True, None)\n\n    ret = OrderedDict()\n    if \"baseline\" in experiments:\n        ret[\"baseline\"] = experiments.pop(\"baseline\")\n\n    ret.update(sorted(experiments.items(), key=_sort, reverse=reverse))\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__show_experiments__format_json.raise_TypeError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__show_experiments__format_json.raise_TypeError", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 256, "end_line": 293, "span_ids": ["_show_experiments", "_format_json"], "tokens": 275}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _show_experiments(all_experiments, console, **kwargs):\n    from rich.table import Table\n\n    include_metrics = _parse_list(kwargs.pop(\"include_metrics\", []))\n    exclude_metrics = _parse_list(kwargs.pop(\"exclude_metrics\", []))\n    include_params = _parse_list(kwargs.pop(\"include_params\", []))\n    exclude_params = _parse_list(kwargs.pop(\"exclude_params\", []))\n\n    metric_names, param_names = _collect_names(\n        all_experiments,\n        include_metrics=include_metrics,\n        exclude_metrics=exclude_metrics,\n        include_params=include_params,\n        exclude_params=exclude_params,\n    )\n\n    table = Table()\n    table.add_column(\"Experiment\", no_wrap=True)\n    if not kwargs.get(\"no_timestamp\", False):\n        table.add_column(\"Created\")\n    for name in metric_names:\n        table.add_column(name, justify=\"right\", no_wrap=True)\n    for name in param_names:\n        table.add_column(name, justify=\"left\")\n\n    for base_rev, experiments in all_experiments.items():\n        for row, _, in _collect_rows(\n            base_rev, experiments, metric_names, param_names, **kwargs,\n        ):\n            table.add_row(*row)\n\n    console.print(table)\n\n\ndef _format_json(item):\n    if isinstance(item, (date, datetime)):\n        return item.isoformat()\n    raise TypeError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsShow_CmdExperimentsShow.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsShow_CmdExperimentsShow.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 300, "end_line": 353, "span_ids": ["CmdExperimentsShow.run", "CmdExperimentsShow"], "tokens": 317}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsShow(CmdBase):\n    def run(self):\n        from rich.console import Console\n\n        from dvc.utils.pager import pager\n\n        try:\n            all_experiments = self.repo.experiments.show(\n                all_branches=self.args.all_branches,\n                all_tags=self.args.all_tags,\n                all_commits=self.args.all_commits,\n                sha_only=self.args.sha,\n            )\n\n            if self.args.show_json:\n                import json\n\n                logger.info(json.dumps(all_experiments, default=_format_json))\n                return 0\n\n            if self.args.no_pager:\n                console = Console()\n            else:\n                # Note: rich does not currently include a native way to force\n                # infinite width for use with a pager\n                console = Console(\n                    file=io.StringIO(), force_terminal=True, width=9999\n                )\n\n            if self.args.precision is None:\n                precision = DEFAULT_PRECISION\n            else:\n                precision = self.args.precision\n\n            _show_experiments(\n                all_experiments,\n                console,\n                include_metrics=self.args.include_metrics,\n                exclude_metrics=self.args.exclude_metrics,\n                include_params=self.args.include_params,\n                exclude_params=self.args.exclude_params,\n                no_timestamp=self.args.no_timestamp,\n                sort_by=self.args.sort_by,\n                sort_order=self.args.sort_order,\n                precision=precision,\n            )\n\n            if not self.args.no_pager:\n                pager(console.file.getvalue())\n        except DvcException:\n            logger.exception(\"failed to show experiments\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsDiff_CmdExperimentsDiff.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsDiff_CmdExperimentsDiff.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 403, "end_line": 441, "span_ids": ["CmdExperimentsDiff", "CmdExperimentsDiff.run"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsDiff(CmdBase):\n    def run(self):\n\n        try:\n            diff = self.repo.experiments.diff(\n                a_rev=self.args.a_rev,\n                b_rev=self.args.b_rev,\n                all=self.args.all,\n            )\n\n            if self.args.show_json:\n                import json\n\n                logger.info(json.dumps(diff))\n            else:\n                if self.args.precision is None:\n                    precision = DEFAULT_PRECISION\n                else:\n                    precision = self.args.precision\n\n                diffs = [(\"metrics\", \"Metric\"), (\"params\", \"Param\")]\n                for key, title in diffs:\n                    table = _show_diff(\n                        diff[key],\n                        title=title,\n                        markdown=self.args.show_md,\n                        no_path=self.args.no_path,\n                        old=self.args.old,\n                        precision=precision,\n                    )\n                    if table:\n                        logger.info(table)\n                        logger.info(\"\")\n\n        except DvcException:\n            logger.exception(\"failed to show experiments diff\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_CmdPostCheckout_CmdPostCheckout._run.return.main_checkout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_CmdPostCheckout_CmdPostCheckout._run.return.main_checkout_", "embedding": null, "metadata": {"file_path": "dvc/command/git_hook.py", "file_name": "git_hook.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 54, "span_ids": ["CmdPostCheckout", "CmdPostCheckout._run"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdPostCheckout(CmdHookBase):\n    def _run(self):\n        # when we are running from pre-commit tool, it doesn't provide CLI\n        # flags, but instead provides respective env vars that we could use.\n        flag = os.environ.get(\"PRE_COMMIT_CHECKOUT_TYPE\")\n        if flag is None and len(self.args.args) >= 3:\n            # see https://git-scm.com/docs/githooks#_post_checkout\n            flag = self.args.args[2]\n\n        # checking out some reference and not specific file.\n        if flag != \"1\":\n            return 0\n\n        # make sure we are not in the middle of a rebase/merge, so we\n        # don't accidentally break it with an unsuccessful checkout.\n        # Note that git hooks are always running in repo root.\n        if os.path.isdir(os.path.join(\".git\", \"rebase-merge\")):\n            return 0\n\n        from dvc.main import main\n\n        return main([\"checkout\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_CmdPrePush_CmdMergeDriver._run.try_.finally_.dvc_close_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/git_hook.py_CmdPrePush_CmdMergeDriver._run.try_.finally_.dvc_close_", "embedding": null, "metadata": {"file_path": "dvc/command/git_hook.py", "file_name": "git_hook.py", "file_type": "text/x-python", "category": "implementation", "start_line": 57, "end_line": 81, "span_ids": ["CmdPrePush", "CmdPrePush._run", "CmdMergeDriver", "CmdMergeDriver._run"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdPrePush(CmdHookBase):\n    def _run(self):\n        from dvc.main import main\n\n        return main([\"push\"])\n\n\nclass CmdMergeDriver(CmdHookBase):\n    def _run(self):\n        from dvc.dvcfile import Dvcfile\n        from dvc.repo import Repo\n\n        dvc = Repo()\n\n        try:\n            with dvc.state:\n                ancestor = Dvcfile(dvc, self.args.ancestor, verify=False)\n                our = Dvcfile(dvc, self.args.our, verify=False)\n                their = Dvcfile(dvc, self.args.their, verify=False)\n\n                our.merge(ancestor, their)\n\n                return 0\n        finally:\n            dvc.close()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_CmdMetricsBase_CmdMetricsShow.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_CmdMetricsBase_CmdMetricsShow.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/metrics.py", "file_name": "metrics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 72, "end_line": 105, "span_ids": ["CmdMetricsShow", "CmdMetricsBase", "CmdMetricsShow.run"], "tokens": 169}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdMetricsBase(CmdBase):\n    UNINITIALIZED = True\n\n\nclass CmdMetricsShow(CmdMetricsBase):\n    def run(self):\n        try:\n            metrics = self.repo.metrics.show(\n                self.args.targets,\n                all_branches=self.args.all_branches,\n                all_tags=self.args.all_tags,\n                all_commits=self.args.all_commits,\n                recursive=self.args.recursive,\n            )\n\n            if self.args.show_json:\n                import json\n\n                logger.info(json.dumps(metrics))\n            else:\n                table = _show_metrics(\n                    metrics,\n                    self.args.show_md,\n                    self.args.all_branches,\n                    self.args.all_tags,\n                    self.args.all_commits,\n                )\n                if table:\n                    logger.info(table)\n        except DvcException:\n            logger.exception(\"\")\n            return 1\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteRemove_CmdRemoteRemove.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteRemove_CmdRemoteRemove.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 43, "end_line": 59, "span_ids": ["CmdRemoteRemove", "CmdRemoteRemove.run"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdRemoteRemove(CmdRemote):\n    def run(self):\n        with self.config.edit(self.args.level) as conf:\n            self._check_exists(conf)\n            del conf[\"remote\"][self.args.name]\n\n        up_to_level = self.args.level or \"repo\"\n        # Remove core.remote refs to this remote in any shadowing configs\n        for level in reversed(self.config.LEVELS):\n            with self.config.edit(level) as conf:\n                if conf[\"core\"].get(\"remote\") == self.args.name:\n                    del conf[\"core\"][\"remote\"]\n\n            if level == up_to_level:\n                break\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteModify_CmdRemoteModify.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/remote.py_CmdRemoteModify_CmdRemoteModify.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/remote.py", "file_name": "remote.py", "file_type": "text/x-python", "category": "implementation", "start_line": 61, "end_line": 75, "span_ids": ["CmdRemoteModify.run", "CmdRemoteModify"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdRemoteModify(CmdRemote):\n    def run(self):\n        with self.config.edit(self.args.level) as conf:\n            merged = self.config.load_config_to_level(self.args.level)\n            merge(merged, conf)\n            self._check_exists(merged)\n\n            if self.args.name not in conf[\"remote\"]:\n                conf[\"remote\"][self.args.name] = {}\n            section = conf[\"remote\"][self.args.name]\n            if self.args.unset:\n                section.pop(self.args.option, None)\n            else:\n                section[self.args.option] = self.args.value\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_add_parser_add_parser.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_add_parser_add_parser.None_11", "embedding": null, "metadata": {"file_path": "dvc/command/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 87, "end_line": 206, "span_ids": ["add_parser"], "tokens": 732}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    RUN_HELP = \"Generate a stage file from a command and execute the command.\"\n    run_parser = subparsers.add_parser(\n        \"run\",\n        parents=[parent_parser],\n        description=append_doc_link(RUN_HELP, \"run\"),\n        help=RUN_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    run_parser.add_argument(\n        \"-d\",\n        \"--deps\",\n        action=\"append\",\n        default=[],\n        help=\"Declare dependencies for reproducible cmd.\",\n        metavar=\"<path>\",\n    ).complete = completion.FILE\n    run_parser.add_argument(\n        \"-n\", \"--name\", help=\"Stage name.\",\n    )\n    run_parser.add_argument(\n        \"-o\",\n        \"--outs\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output file or directory.\",\n        metavar=\"<filename>\",\n    ).complete = completion.FILE\n    run_parser.add_argument(\n        \"-O\",\n        \"--outs-no-cache\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output file or directory \"\n        \"(do not put into DVC cache).\",\n        metavar=\"<filename>\",\n    ).complete = completion.FILE\n    run_parser.add_argument(\n        \"-p\",\n        \"--params\",\n        action=\"append\",\n        default=[],\n        help=\"Declare parameter to use as additional dependency.\",\n        metavar=\"[<filename>:]<params_list>\",\n    ).complete = completion.FILE\n    run_parser.add_argument(\n        \"-m\",\n        \"--metrics\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output metrics file.\",\n        metavar=\"<path>\",\n    )\n    run_parser.add_argument(\n        \"-M\",\n        \"--metrics-no-cache\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output metrics file (do not put into DVC cache).\",\n        metavar=\"<path>\",\n    )\n    run_parser.add_argument(\n        \"--plots\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output plot file.\",\n        metavar=\"<path>\",\n    )\n    run_parser.add_argument(\n        \"--plots-no-cache\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output plot file (do not put into DVC cache).\",\n        metavar=\"<path>\",\n    )\n    run_parser.add_argument(\n        \"--file\", metavar=\"<filename>\", help=argparse.SUPPRESS,\n    )\n    run_parser.add_argument(\n        \"-w\",\n        \"--wdir\",\n        help=\"Directory within your repo to run your command in.\",\n        metavar=\"<path>\",\n    )\n    run_parser.add_argument(\n        \"--no-exec\",\n        action=\"store_true\",\n        default=False,\n        help=\"Only create stage file without actually running it.\",\n    )\n    run_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Overwrite existing stage\",\n    )\n    run_parser.add_argument(\n        \"--no-run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Execute the command even if this stage has already been run \"\n            \"with the same command/dependencies/outputs/etc before.\"\n        ),\n    )\n    run_parser.add_argument(\n        \"--no-commit\",\n        action=\"store_true\",\n        default=False,\n        help=\"Don't put files/directories into cache.\",\n    )\n    run_parser.add_argument(\n        \"--outs-persist\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output file or directory that will not be \"\n        \"removed upon repro.\",\n        metavar=\"<filename>\",\n    )\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_add_parser.None_12_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/run.py_add_parser.None_12_", "embedding": null, "metadata": {"file_path": "dvc/command/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 210, "end_line": 257, "span_ids": ["add_parser"], "tokens": 306}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    run_parser.add_argument(\n        \"--outs-persist-no-cache\",\n        action=\"append\",\n        default=[],\n        help=\"Declare output file or directory that will not be \"\n        \"removed upon repro (do not put into DVC cache).\",\n        metavar=\"<filename>\",\n    )\n    run_parser.add_argument(\n        \"-c\",\n        \"--checkpoints\",\n        action=\"append\",\n        default=[],\n        help=argparse.SUPPRESS,\n        metavar=\"<filename>\",\n    ).complete = completion.FILE\n    run_parser.add_argument(\n        \"--always-changed\",\n        action=\"store_true\",\n        default=False,\n        help=\"Always consider this DVC-file as changed.\",\n    )\n    run_parser.add_argument(\n        \"--single-stage\",\n        action=\"store_true\",\n        default=False,\n        help=argparse.SUPPRESS,\n    )\n    run_parser.add_argument(\n        \"--external\",\n        action=\"store_true\",\n        default=False,\n        help=\"Allow outputs that are outside of the DVC repository.\",\n    )\n    run_parser.add_argument(\n        \"--desc\",\n        type=str,\n        metavar=\"<text>\",\n        help=(\n            \"User description of the stage (optional). \"\n            \"This doesn't affect any DVC operations.\"\n        ),\n    )\n    run_parser.add_argument(\n        \"command\", nargs=argparse.REMAINDER, help=\"Command to execute.\"\n    )\n    run_parser.set_defaults(func=CmdRun)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/status.py_logging_CmdDataStatus._normalize.return.s_self_STATUS_LEN_le": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/status.py_logging_CmdDataStatus._normalize.return.s_self_STATUS_LEN_le", "embedding": null, "metadata": {"file_path": "dvc/command/status.py", "file_name": "status.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["imports", "CmdDataStatus._normalize", "CmdDataStatus"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.command.data_sync import CmdDataBase\nfrom dvc.exceptions import DvcException\nfrom dvc.utils import format_link\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdDataStatus(CmdDataBase):\n    STATUS_LEN = 20\n    STATUS_INDENT = \"\\t\"\n    UP_TO_DATE_MSG = \"Data and pipelines are up to date.\"\n    IN_SYNC_MSG = \"Cache and remote '{remote}' are in sync.\"\n    EMPTY_PROJECT_MSG = (\n        \"There are no data or pipelines tracked in this project yet.\\n\"\n        \"See {link} to get started!\"\n    ).format(link=format_link(\"https://dvc.org/doc/start\"))\n\n    def _normalize(self, s):\n        s += \":\"\n        assert len(s) < self.STATUS_LEN\n        return s + (self.STATUS_LEN - len(s)) * \" \"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/status.py_CmdDataStatus._show_CmdDataStatus._show.for_key_value_in_status_.if_isinstance_value_str_.elif_value_.self__show_value_indent_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/status.py_CmdDataStatus._show_CmdDataStatus._show.for_key_value_in_status_.if_isinstance_value_str_.elif_value_.self__show_value_indent_", "embedding": null, "metadata": {"file_path": "dvc/command/status.py", "file_name": "status.py", "file_type": "text/x-python", "category": "implementation", "start_line": 24, "end_line": 43, "span_ids": ["CmdDataStatus._show"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdDataStatus(CmdDataBase):\n\n    def _show(self, status, indent=0):\n        ind = indent * self.STATUS_INDENT\n\n        if isinstance(status, str):\n            logger.info(f\"{ind}{status}\")\n            return\n\n        if isinstance(status, list):\n            for entry in status:\n                self._show(entry, indent)\n            return\n\n        assert isinstance(status, dict)\n\n        for key, value in status.items():\n            if isinstance(value, str):\n                logger.info(\"{}{}{}\".format(ind, self._normalize(value), key))\n            elif value:\n                logger.info(f\"{ind}{key}:\")\n                self._show(value, indent + 1)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/version.py_argparse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/version.py_argparse_", "embedding": null, "metadata": {"file_path": "dvc/command/version.py", "file_name": "version.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["imports", "add_parser", "CmdVersion.run", "CmdVersion"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command.base import CmdBaseNoRepo, append_doc_link\nfrom dvc.info import get_dvc_info\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdVersion(CmdBaseNoRepo):\n    def run(self):\n        dvc_info = get_dvc_info()\n        logger.info(dvc_info)\n        return 0\n\n\ndef add_parser(subparsers, parent_parser):\n    VERSION_HELP = (\n        \"Display the DVC version and system/environment information.\"\n    )\n    version_parser = subparsers.add_parser(\n        \"version\",\n        parents=[parent_parser],\n        description=append_doc_link(VERSION_HELP, \"version\"),\n        help=VERSION_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n        aliases=[\"doctor\"],\n    )\n    version_parser.set_defaults(func=CmdVersion)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_RelPath_WEBDAV_COMMON._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_RelPath_WEBDAV_COMMON._", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 99, "end_line": 133, "span_ids": ["RelPath", "impl:6"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RelPath(str):\n    pass\n\n\nREMOTE_COMMON = {\n    \"url\": str,\n    \"checksum_jobs\": All(Coerce(int), Range(1)),\n    \"jobs\": All(Coerce(int), Range(1)),\n    Optional(\"no_traverse\"): Bool,  # obsoleted\n    \"verify\": Bool,\n}\nLOCAL_COMMON = {\n    \"type\": supported_cache_type,\n    Optional(\"protected\", default=False): Bool,  # obsoleted\n    \"shared\": All(Lower, Choices(\"group\")),\n    Optional(\"slow_link_warning\", default=True): Bool,\n}\nHTTP_COMMON = {\n    \"auth\": All(Lower, Choices(\"basic\", \"digest\", \"custom\")),\n    \"custom_auth_header\": str,\n    \"user\": str,\n    \"password\": str,\n    \"ask_password\": Bool,\n    \"ssl_verify\": Bool,\n    \"method\": str,\n}\nWEBDAV_COMMON = {\n    \"user\": str,\n    \"password\": str,\n    \"ask_password\": Bool,\n    \"token\": str,\n    \"cert_path\": str,\n    \"key_path\": str,\n    \"timeout\": Coerce(int),\n}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_SCHEMA_SCHEMA._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_SCHEMA_SCHEMA._", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 135, "end_line": 241, "span_ids": ["impl:6"], "tokens": 831}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "SCHEMA = {\n    \"core\": {\n        \"remote\": Lower,\n        \"checksum_jobs\": All(Coerce(int), Range(1)),\n        Optional(\"interactive\", default=False): Bool,\n        Optional(\"analytics\", default=True): Bool,\n        Optional(\"hardlink_lock\", default=False): Bool,\n        Optional(\"no_scm\", default=False): Bool,\n        Optional(\"autostage\", default=False): Bool,\n        Optional(\"experiments\"): Bool,  # obsoleted\n        Optional(\"check_update\", default=True): Bool,\n    },\n    \"cache\": {\n        \"local\": str,\n        \"s3\": str,\n        \"gs\": str,\n        \"hdfs\": str,\n        \"webhdfs\": str,\n        \"ssh\": str,\n        \"azure\": str,\n        # This is for default local cache\n        \"dir\": str,\n        **LOCAL_COMMON,\n    },\n    \"remote\": {\n        str: ByUrl(\n            {\n                \"\": {**LOCAL_COMMON, **REMOTE_COMMON},\n                \"s3\": {\n                    \"region\": str,\n                    \"profile\": str,\n                    \"credentialpath\": str,\n                    \"endpointurl\": str,\n                    \"access_key_id\": str,\n                    \"secret_access_key\": str,\n                    Optional(\"listobjects\", default=False): Bool,  # obsoleted\n                    Optional(\"use_ssl\", default=True): Bool,\n                    \"sse\": str,\n                    \"sse_kms_key_id\": str,\n                    \"acl\": str,\n                    \"grant_read\": str,\n                    \"grant_read_acp\": str,\n                    \"grant_write_acp\": str,\n                    \"grant_full_control\": str,\n                    **REMOTE_COMMON,\n                },\n                \"gs\": {\n                    \"projectname\": str,\n                    \"credentialpath\": str,\n                    **REMOTE_COMMON,\n                },\n                \"ssh\": {\n                    \"type\": supported_cache_type,\n                    \"port\": Coerce(int),\n                    \"user\": str,\n                    \"password\": str,\n                    \"ask_password\": Bool,\n                    \"keyfile\": str,\n                    \"timeout\": Coerce(int),\n                    \"gss_auth\": Bool,\n                    \"allow_agent\": Bool,\n                    **REMOTE_COMMON,\n                },\n                \"hdfs\": {\"user\": str, **REMOTE_COMMON},\n                \"webhdfs\": {\n                    \"hdfscli_config\": str,\n                    \"webhdfs_token\": str,\n                    \"user\": str,\n                    \"webhdfs_alias\": str,\n                    **REMOTE_COMMON,\n                },\n                \"azure\": {\"connection_string\": str, **REMOTE_COMMON},\n                \"oss\": {\n                    \"oss_key_id\": str,\n                    \"oss_key_secret\": str,\n                    \"oss_endpoint\": str,\n                    **REMOTE_COMMON,\n                },\n                \"gdrive\": {\n                    \"gdrive_use_service_account\": Bool,\n                    \"gdrive_client_id\": str,\n                    \"gdrive_client_secret\": str,\n                    \"gdrive_user_credentials_file\": str,\n                    \"gdrive_service_account_email\": str,\n                    \"gdrive_service_account_user_email\": str,\n                    \"gdrive_service_account_p12_file_path\": str,\n                    Optional(\"gdrive_trash_only\", default=False): Bool,\n                    **REMOTE_COMMON,\n                },\n                \"http\": {**HTTP_COMMON, **REMOTE_COMMON},\n                \"https\": {**HTTP_COMMON, **REMOTE_COMMON},\n                \"webdav\": {**WEBDAV_COMMON, **REMOTE_COMMON},\n                \"webdavs\": {**WEBDAV_COMMON, **REMOTE_COMMON},\n                \"remote\": {str: object},  # Any of the above options are valid\n            }\n        )\n    },\n    \"state\": {\n        \"row_limit\": All(Coerce(int), Range(1)),\n        \"row_cleanup_quota\": All(Coerce(int), Range(0, 100)),\n    },\n    # section for experimental features\n    \"feature\": {\n        # enabled by default. It's of no use, kept for backward compatibility.\n        Optional(\"parametrization\", default=True): Bool\n    },\n}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py__parse_remotes_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py__parse_remotes_", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 445, "end_line": 484, "span_ids": ["_parse_remotes", "_lower_keys", "_pack_remotes", "merge"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _parse_remotes(conf):\n    result = {\"remote\": {}}\n\n    for section, val in conf.items():\n        name = re_find(r'^\\s*remote\\s*\"(.*)\"\\s*$', section)\n        if name:\n            result[\"remote\"][name] = val\n        else:\n            result[section] = val\n\n    return result\n\n\ndef _pack_remotes(conf):\n    # Drop empty sections\n    result = compact(conf)\n\n    # Transform remote.name -> 'remote \"name\"'\n    for name, val in conf[\"remote\"].items():\n        result[f'remote \"{name}\"'] = val\n    result.pop(\"remote\", None)\n\n    return result\n\n\ndef merge(into, update):\n    \"\"\"Merges second dict into first recursively\"\"\"\n    for key, val in update.items():\n        if isinstance(into.get(key), dict) and isinstance(val, dict):\n            merge(into[key], val)\n        else:\n            into[key] = val\n\n\ndef _lower_keys(data):\n    return {\n        k.lower(): _lower_keys(v) if isinstance(v, dict) else v\n        for k, v in data.items()\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/daemon.py__Launch_dvc_daemon_co__spawn_windows._popen_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/daemon.py__Launch_dvc_daemon_co__spawn_windows._popen_", "embedding": null, "metadata": {"file_path": "dvc/daemon.py", "file_name": "daemon.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 37, "span_ids": ["_spawn_windows", "_popen", "docstring"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Launch `dvc daemon` command in a separate detached process.\"\"\"\n\nimport inspect\nimport logging\nimport os\nimport platform\nimport sys\nfrom subprocess import Popen\n\nfrom dvc.env import DVC_DAEMON\nfrom dvc.utils import fix_env, is_binary\n\nlogger = logging.getLogger(__name__)\n\nCREATE_NEW_PROCESS_GROUP = 0x00000200\nDETACHED_PROCESS = 0x00000008\n\n\ndef _popen(cmd, **kwargs):\n    prefix = [sys.executable]\n    if not is_binary():\n        prefix += [sys.argv[0]]\n\n    return Popen(prefix + cmd, close_fds=True, shell=False, **kwargs)\n\n\ndef _spawn_windows(cmd, env):\n    from subprocess import STARTF_USESHOWWINDOW, STARTUPINFO\n\n    creationflags = CREATE_NEW_PROCESS_GROUP | DETACHED_PROCESS\n\n    startupinfo = STARTUPINFO()\n    startupinfo.dwFlags |= STARTF_USESHOWWINDOW\n\n    _popen(\n        cmd, env=env, creationflags=creationflags, startupinfo=startupinfo,\n    ).communicate()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/param.py_os_ParamsDependency.fill_values.self.hash_info.HashInfo_self_PARAM_PARAM": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/param.py_os_ParamsDependency.fill_values.self.hash_info.HashInfo_self_PARAM_PARAM", "embedding": null, "metadata": {"file_path": "dvc/dependency/param.py", "file_name": "param.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 58, "span_ids": ["ParamsDependency", "ParamsDependency.__init__", "ParamsDependency.dumpd", "BadParamFileError", "imports", "MissingParamsError", "ParamsDependency.fill_values"], "tokens": 316}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom collections import defaultdict\n\nimport dpath.util\nfrom voluptuous import Any\n\nfrom dvc.dependency.local import LocalDependency\nfrom dvc.exceptions import DvcException\nfrom dvc.hash_info import HashInfo\nfrom dvc.utils.serialize import LOADERS, ParseError\n\n\nclass MissingParamsError(DvcException):\n    pass\n\n\nclass BadParamFileError(DvcException):\n    pass\n\n\nclass ParamsDependency(LocalDependency):\n    PARAM_PARAMS = \"params\"\n    PARAM_SCHEMA = {PARAM_PARAMS: Any(dict, list, None)}\n    DEFAULT_PARAMS_FILE = \"params.yaml\"\n\n    def __init__(self, stage, path, params):\n        info = {}\n        self.params = []\n        if params:\n            if isinstance(params, list):\n                self.params = params\n            else:\n                assert isinstance(params, dict)\n                self.params = list(params.keys())\n                info = {self.PARAM_PARAMS: params}\n\n        super().__init__(\n            stage,\n            path\n            or os.path.join(stage.repo.root_dir, self.DEFAULT_PARAMS_FILE),\n            info=info,\n        )\n\n    def dumpd(self):\n        ret = super().dumpd()\n        if not self.hash_info:\n            ret[self.PARAM_PARAMS] = self.params\n        return ret\n\n    def fill_values(self, values=None):\n        \"\"\"Load params values dynamically.\"\"\"\n        if not values:\n            return\n        info = {}\n        for param in self.params:\n            if param in values:\n                info[param] = values[param]\n        self.hash_info = HashInfo(self.PARAM_PARAMS, info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/param.py_ParamsDependency.workspace_status_ParamsDependency.status.return.self_workspace_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/param.py_ParamsDependency.workspace_status_ParamsDependency.status.return.self_workspace_status_", "embedding": null, "metadata": {"file_path": "dvc/dependency/param.py", "file_name": "param.py", "file_type": "text/x-python", "category": "implementation", "start_line": 60, "end_line": 85, "span_ids": ["ParamsDependency.workspace_status", "ParamsDependency.status"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ParamsDependency(LocalDependency):\n\n    def workspace_status(self):\n        status = super().workspace_status()\n\n        if status.get(str(self)) == \"deleted\":\n            return status\n\n        status = defaultdict(dict)\n        info = self.hash_info.value if self.hash_info else {}\n        actual = self.read_params()\n        for param in self.params:\n            if param not in actual.keys():\n                st = \"deleted\"\n            elif param not in info:\n                st = \"new\"\n            elif actual[param] != info[param]:\n                st = \"modified\"\n            else:\n                assert actual[param] == info[param]\n                continue\n\n            status[str(self)][param] = st\n\n        return status\n\n    def status(self):\n        return self.workspace_status()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/param.py_ParamsDependency.read_params_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/param.py_ParamsDependency.read_params_", "embedding": null, "metadata": {"file_path": "dvc/dependency/param.py", "file_name": "param.py", "file_type": "text/x-python", "category": "implementation", "start_line": 87, "end_line": 120, "span_ids": ["ParamsDependency.get_hash", "ParamsDependency.read_params"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ParamsDependency(LocalDependency):\n\n    def read_params(self):\n        if not self.exists:\n            return {}\n\n        suffix = self.path_info.suffix.lower()\n        loader = LOADERS[suffix]\n        try:\n            config = loader(self.path_info, tree=self.repo.tree)\n        except ParseError as exc:\n            raise BadParamFileError(\n                f\"Unable to read parameters from '{self}'\"\n            ) from exc\n\n        ret = {}\n        for param in self.params:\n            try:\n                ret[param] = dpath.util.get(config, param, separator=\".\")\n            except KeyError:\n                pass\n        return ret\n\n    def get_hash(self):\n        info = self.read_params()\n\n        missing_params = set(self.params) - set(info.keys())\n        if missing_params:\n            raise MissingParamsError(\n                \"Parameters '{}' are missing from '{}'.\".format(\n                    \", \".join(missing_params), self,\n                )\n            )\n\n        return HashInfo(self.PARAM_PARAMS, info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/repo.py_from_voluptuous_import_Re_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/repo.py_from_voluptuous_import_Re_", "embedding": null, "metadata": {"file_path": "dvc/dependency/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 97, "span_ids": ["RepoDependency.save", "RepoDependency.__init__", "RepoDependency.repo_pair", "RepoDependency.dumpd", "imports", "RepoDependency._make_repo", "RepoDependency.status", "RepoDependency.download", "RepoDependency.__str__", "RepoDependency.update", "RepoDependency.changed_checksum", "RepoDependency._parse_path", "RepoDependency.workspace_status", "RepoDependency._get_hash", "RepoDependency", "RepoDependency.is_in_repo"], "tokens": 669}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from voluptuous import Required\n\nfrom dvc.path_info import PathInfo\n\nfrom .local import LocalDependency\n\n\nclass RepoDependency(LocalDependency):\n    PARAM_REPO = \"repo\"\n    PARAM_URL = \"url\"\n    PARAM_REV = \"rev\"\n    PARAM_REV_LOCK = \"rev_lock\"\n\n    REPO_SCHEMA = {\n        PARAM_REPO: {\n            Required(PARAM_URL): str,\n            PARAM_REV: str,\n            PARAM_REV_LOCK: str,\n        }\n    }\n\n    def __init__(self, def_repo, stage, *args, **kwargs):\n        self.def_repo = def_repo\n        super().__init__(stage, *args, **kwargs)\n\n    def _parse_path(self, tree, path):\n        return None\n\n    @property\n    def is_in_repo(self):\n        return False\n\n    @property\n    def repo_pair(self):\n        d = self.def_repo\n        rev = d.get(self.PARAM_REV_LOCK) or d.get(self.PARAM_REV)\n        return d[self.PARAM_URL], rev\n\n    def __str__(self):\n        return \"{} ({})\".format(self.def_path, self.def_repo[self.PARAM_URL])\n\n    def _make_repo(self, *, locked=True, **kwargs):\n        from dvc.external_repo import external_repo\n\n        d = self.def_repo\n        rev = (d.get(\"rev_lock\") if locked else None) or d.get(\"rev\")\n        return external_repo(d[\"url\"], rev=rev, **kwargs)\n\n    def _get_hash(self, locked=True):\n        # we want stream but not fetch, so DVC out directories are\n        # walked, but dir contents is not fetched\n        with self._make_repo(locked=locked, fetch=False, stream=True) as repo:\n            path_info = PathInfo(repo.root_dir) / self.def_path\n            return repo.repo_tree.get_hash(path_info, follow_subrepos=False)\n\n    def workspace_status(self):\n        current = self._get_hash(locked=True)\n        updated = self._get_hash(locked=False)\n\n        if current != updated:\n            return {str(self): \"update available\"}\n\n        return {}\n\n    def status(self):\n        return self.workspace_status()\n\n    def save(self):\n        pass\n\n    def dumpd(self):\n        return {self.PARAM_PATH: self.def_path, self.PARAM_REPO: self.def_repo}\n\n    def download(self, to, jobs=None):\n        cache = self.repo.cache.local\n\n        with self._make_repo(cache_dir=cache.cache_dir) as repo:\n            if self.def_repo.get(self.PARAM_REV_LOCK) is None:\n                self.def_repo[self.PARAM_REV_LOCK] = repo.get_rev()\n\n            _, _, cache_infos = repo.fetch_external([self.def_path], jobs=jobs)\n\n        cache.checkout(to.path_info, cache_infos[0])\n\n    def update(self, rev=None):\n        if rev:\n            self.def_repo[self.PARAM_REV] = rev\n\n        with self._make_repo(locked=False) as repo:\n            self.def_repo[self.PARAM_REV_LOCK] = repo.get_rev()\n\n    def changed_checksum(self):\n        # From current repo point of view what describes RepoDependency is its\n        # origin project url and rev_lock, and it makes RepoDependency\n        # immutable, hence its impossible for checksum to change.\n        return False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/webdav.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/webdav.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 9, "span_ids": ["imports", "WebDAVDependency"], "tokens": 51}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.base import BaseOutput\n\nfrom ..tree.webdav import WebDAVTree\n\n\nclass WebDAVDependency(BaseDependency, BaseOutput):\n    TREE_CLS = WebDAVTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/webdavs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/webdavs.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/webdavs.py", "file_name": "webdavs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["imports", "WebDAVSDependency"], "tokens": 45}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from ..tree.webdavs import WebDAVSTree\nfrom .webdav import WebDAVDependency\n\n\nclass WebDAVSDependency(WebDAVDependency):\n    TREE_CLS = WebDAVSTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_FileMixin.validate_FileMixin.merge.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_FileMixin.validate_FileMixin.merge.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 113, "end_line": 129, "span_ids": ["FileMixin.dump", "FileMixin.validate", "FileMixin.remove", "FileMixin.merge"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class FileMixin:\n\n    @classmethod\n    def validate(cls, d, fname=None):\n        assert isinstance(cls.SCHEMA, collections.abc.Callable)\n        try:\n            cls.SCHEMA(d)  # pylint: disable=not-callable\n        except MultipleInvalid as exc:\n            raise StageFileFormatError(f\"'{fname}' format error: {exc}\")\n\n    def remove(self, force=False):  # pylint: disable=unused-argument\n        with contextlib.suppress(FileNotFoundError):\n            os.unlink(self.path)\n\n    def dump(self, stage, **kwargs):\n        raise NotImplementedError\n\n    def merge(self, ancestor, other):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_SingleStageFile_SingleStageFile.merge.self_dump_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_SingleStageFile_SingleStageFile.merge.self_dump_stage_", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 132, "end_line": 167, "span_ids": ["SingleStageFile.merge", "SingleStageFile", "SingleStageFile.stage", "SingleStageFile.stages", "SingleStageFile.dump", "SingleStageFile.remove_stage"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SingleStageFile(FileMixin):\n    from dvc.schema import COMPILED_SINGLE_STAGE_SCHEMA as SCHEMA\n\n    @property\n    def stage(self):\n        data, raw = self._load()\n        return SingleStageLoader.load_stage(self, data, raw)\n\n    @property\n    def stages(self):\n        data, raw = self._load()\n        return SingleStageLoader(self, data, raw)\n\n    def dump(self, stage, **kwargs):\n        \"\"\"Dumps given stage appropriately in the dvcfile.\"\"\"\n        from dvc.stage import PipelineStage\n\n        assert not isinstance(stage, PipelineStage)\n        if self.verify:\n            check_dvc_filename(self.path)\n        logger.debug(\n            \"Saving information to '{file}'.\".format(file=relpath(self.path))\n        )\n        dump_yaml(self.path, serialize.to_single_stage_file(stage))\n        self.repo.scm.track_file(self.relpath)\n\n    def remove_stage(self, stage):  # pylint: disable=unused-argument\n        self.remove()\n\n    def merge(self, ancestor, other):\n        assert isinstance(ancestor, SingleStageFile)\n        assert isinstance(other, SingleStageFile)\n\n        stage = self.stage\n        stage.merge(ancestor.stage, other.stage)\n        self.dump(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_logging_IsADVCRepoError._Raised_when_it_is_not_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_logging_IsADVCRepoError._Raised_when_it_is_not_", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 33, "span_ids": ["imports", "IsADVCRepoError"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport tempfile\nimport threading\nfrom contextlib import contextmanager\nfrom distutils.dir_util import copy_tree\nfrom typing import Dict, Iterable\n\nfrom funcy import cached_property, reraise, retry, wrap_with\n\nfrom dvc.config import NoRemoteError, NotDvcRepoError\nfrom dvc.exceptions import (\n    DvcException,\n    FileMissingError,\n    NoOutputInExternalRepoError,\n    NoRemoteInExternalRepoError,\n    OutputNotFoundError,\n    PathMissingError,\n)\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\nfrom dvc.scm.base import CloneError\nfrom dvc.scm.git import Git\nfrom dvc.tree.local import LocalTree\nfrom dvc.tree.repo import RepoTree\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import remove\n\nlogger = logging.getLogger(__name__)\n\n\nclass IsADVCRepoError(DvcException):\n    \"\"\"Raised when it is not expected to be a dvc repo.\"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo_ExternalRepo._fetch_to_cache.return.hash_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo_ExternalRepo._fetch_to_cache.return.hash_info", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 113, "end_line": 182, "span_ids": ["ExternalRepo", "ExternalRepo.repo_tree", "ExternalRepo.__str__", "ExternalRepo.get_rev", "ExternalRepo._fetch_to_cache", "ExternalRepo.__init__"], "tokens": 372}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExternalRepo(Repo):\n    # pylint: disable=no-member\n\n    def __init__(\n        self,\n        root_dir,\n        url,\n        scm=None,\n        rev=None,\n        for_write=False,\n        cache_dir=None,\n        cache_types=None,\n        uninitialized=False,\n        **kwargs,\n    ):\n        self.url = url\n        self.for_write = for_write\n        self.tree_confs = kwargs\n\n        self._cache_config = {\n            \"cache\": {\n                \"dir\": cache_dir or self._get_cache_dir(),\n                \"type\": cache_types,\n            }\n        }\n\n        config = self._cache_config.copy()\n        if os.path.isdir(url):\n            config.update(_get_remote_config(url))\n\n        super().__init__(\n            root_dir,\n            scm=scm,\n            rev=rev,\n            uninitialized=uninitialized,\n            config=config,\n        )\n\n    def __str__(self):\n        return self.url\n\n    @cached_property\n    def repo_tree(self):\n        return self._get_tree_for(\n            self, subrepos=not self.for_write, repo_factory=self.make_repo\n        )\n\n    def get_rev(self):\n        assert self.scm\n        if isinstance(self.tree, LocalTree):\n            return self.scm.get_rev()\n        return self.tree.rev\n\n    def _fetch_to_cache(self, path_info, repo, callback, **kwargs):\n        # don't support subrepo traversal as it might fail due to difference\n        # in remotes\n        tree = self._get_tree_for(repo)\n        cache = repo.cache.local\n\n        hash_info = tree.get_hash(\n            path_info, download_callback=callback, **kwargs\n        )\n        cache.save(\n            path_info,\n            tree,\n            hash_info,\n            save_link=False,\n            download_callback=callback,\n        )\n        return hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo.fetch_external_ExternalRepo.fetch_external.return.sum_download_results_fa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo.fetch_external_ExternalRepo.fetch_external.return.sum_download_results_fa", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 151, "end_line": 180, "span_ids": ["ExternalRepo.fetch_external"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExternalRepo(Repo):\n\n    def fetch_external(self, paths: Iterable, **kwargs):\n        \"\"\"Fetch specified external repo paths into cache.\n\n        Returns 3-tuple in the form\n            (downloaded, failed, list(cache_infos))\n        where cache_infos can be used as checkout targets for the\n        fetched paths.\n        \"\"\"\n        download_results = []\n        failed = 0\n        root = PathInfo(self.root_dir)\n\n        paths = [root / path for path in paths]\n\n        def download_update(result):\n            download_results.append(result)\n\n        hash_infos = []\n        for path in paths:\n            with reraise(FileNotFoundError, PathMissingError(path, self.url)):\n                metadata = self.repo_tree.metadata(path)\n\n            self._check_repo(path, metadata.repo)\n            repo = metadata.repo\n            hash_info = self._fetch_to_cache(\n                path, repo, download_update, **kwargs\n            )\n            hash_infos.append(hash_info)\n\n        return sum(download_results), failed, hash_infos", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo._check_repo_ExternalRepo.get_external.if_metadata_output_exists.else_.tree_copytree_path_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo._check_repo_ExternalRepo.get_external.if_metadata_output_exists.else_.tree_copytree_path_info_", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 178, "end_line": 206, "span_ids": ["ExternalRepo.get_external", "ExternalRepo._check_repo"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExternalRepo(Repo):\n\n    def _check_repo(self, path_info, repo):\n        if not repo:\n            return\n\n        repo_path = PathInfo(repo.root_dir)\n        if path_info == repo_path and isinstance(repo, Repo):\n            message = \"Cannot fetch a complete DVC repository\"\n            if repo.root_dir != self.root_dir:\n                rel = relpath(repo.root_dir, self.root_dir)\n                message += f\" '{rel}'\"\n            raise IsADVCRepoError(message)\n\n    def get_external(self, path, dest):\n        \"\"\"Convenience wrapper for fetch_external and checkout.\"\"\"\n        path_info = PathInfo(self.root_dir) / path\n        with reraise(FileNotFoundError, PathMissingError(path, self.url)):\n            metadata = self.repo_tree.metadata(path_info)\n\n        self._check_repo(path_info, metadata.repo)\n        if metadata.output_exists:\n            repo = metadata.repo\n            cache = repo.cache.local\n            # fetch DVC and git files to tmpdir cache, then checkout\n            save_info = self._fetch_to_cache(path_info, repo, None)\n            cache.checkout(PathInfo(dest), save_info)\n        else:\n            # git-only folder, just copy files directly to dest\n            tree = self._get_tree_for(metadata.repo)  # ignore subrepos\n            tree.copytree(path_info, dest)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__clone_default_branch__clone_default_branch.return.clone_path_shallow": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__clone_default_branch__clone_default_branch.return.clone_path_shallow", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 315, "end_line": 364, "span_ids": ["_clone_default_branch"], "tokens": 440}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@wrap_with(threading.Lock())\ndef _clone_default_branch(url, rev, for_write=False):\n    \"\"\"Get or create a clean clone of the url.\n\n    The cloned is reactualized with git pull unless rev is a known sha.\n    \"\"\"\n    clone_path, shallow = CLONES.get(url, (None, False))\n\n    git = None\n    try:\n        if clone_path:\n            git = Git(clone_path)\n            # Do not pull for known shas, branches and tags might move\n            if not Git.is_sha(rev) or not git.has_rev(rev):\n                if shallow:\n                    # If we are missing a rev in a shallow clone, fallback to\n                    # a full (unshallowed) clone. Since fetching specific rev\n                    # SHAs is only available in certain git versions, if we\n                    # have need to reference multiple specific revs for a\n                    # given repo URL it is easier/safer for us to work with\n                    # full clones in this case.\n                    logger.debug(\"erepo: unshallowing clone for '%s'\", url)\n                    _unshallow(git)\n                    shallow = False\n                    CLONES[url] = (clone_path, shallow)\n                else:\n                    logger.debug(\"erepo: git pull '%s'\", url)\n                    git.pull()\n        else:\n            logger.debug(\"erepo: git clone '%s' to a temporary dir\", url)\n            clone_path = tempfile.mkdtemp(\"dvc-clone\")\n            if not for_write and rev and not Git.is_sha(rev):\n                # If rev is a tag or branch name try shallow clone first\n                try:\n                    git = Git.clone(url, clone_path, shallow_branch=rev)\n                    shallow = True\n                    logger.debug(\n                        \"erepo: using shallow clone for branch '%s'\", rev\n                    )\n                except CloneError:\n                    pass\n            if not git:\n                git = Git.clone(url, clone_path)\n                shallow = False\n            CLONES[url] = (clone_path, shallow)\n    finally:\n        if git:\n            git.close()\n\n    return clone_path, shallow", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns_DvcIgnorePatterns.__init__.self.ignore_spec._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns_DvcIgnorePatterns.__init__.self.ignore_spec._", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 26, "end_line": 49, "span_ids": ["DvcIgnorePatterns.__init__", "DvcIgnorePatterns"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnorePatterns(DvcIgnore):\n    def __init__(self, pattern_list, dirname):\n        if pattern_list:\n            if isinstance(pattern_list[0], str):\n                pattern_list = [\n                    PatternInfo(pattern, \"\") for pattern in pattern_list\n                ]\n\n        self.pattern_list = pattern_list\n        self.dirname = dirname\n        self.prefix = self.dirname + os.sep\n\n        self.regex_pattern_list = [\n            GitWildMatchPattern.pattern_to_regex(pattern_info.patterns)\n            for pattern_info in pattern_list\n        ]\n\n        self.ignore_spec = [\n            (ignore, re.compile(\"|\".join(item[0] for item in group)))\n            for ignore, group in groupby(\n                self.regex_pattern_list, lambda x: x[1]\n            )\n            if ignore is not None\n        ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns.from_files_DvcIgnorePatterns.from_files.return.cls_path_spec_lines_dirn": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns.from_files_DvcIgnorePatterns.from_files.return.cls_path_spec_lines_dirn", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 51, "end_line": 70, "span_ids": ["DvcIgnorePatterns.from_files"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnorePatterns(DvcIgnore):\n\n    @classmethod\n    def from_files(cls, ignore_file_path, tree):\n        assert os.path.isabs(ignore_file_path)\n        dirname = os.path.normpath(os.path.dirname(ignore_file_path))\n        ignore_file_rel_path = os.path.relpath(\n            ignore_file_path, tree.tree_root\n        )\n        with tree.open(ignore_file_path, encoding=\"utf-8\") as fobj:\n            path_spec_lines = [\n                PatternInfo(\n                    line,\n                    \"{}:{}:{}\".format(ignore_file_rel_path, line_no + 1, line),\n                )\n                for line_no, line in enumerate(\n                    map(str.strip, fobj.readlines())\n                )\n                if line and not (line.strip().startswith(\"#\"))\n            ]\n\n        return cls(path_spec_lines, dirname)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns.__call___DvcIgnorePatterns._get_normalize_path.return.path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns.__call___DvcIgnorePatterns._get_normalize_path.return.path", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 72, "end_line": 92, "span_ids": ["DvcIgnorePatterns._get_normalize_path", "DvcIgnorePatterns.__call__"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnorePatterns(DvcIgnore):\n\n    def __call__(self, root, dirs, files):\n        files = [f for f in files if not self.matches(root, f)]\n        dirs = [d for d in dirs if not self.matches(root, d, True)]\n\n        return dirs, files\n\n    def _get_normalize_path(self, dirname, basename):\n        # NOTE: `relpath` is too slow, so we have to assume that both\n        # `dirname` and `self.dirname` are relative or absolute together.\n        if dirname == self.dirname:\n            path = basename\n        elif dirname.startswith(self.prefix):\n            rel = dirname[len(self.prefix) :]\n            # NOTE: `os.path.join` is ~x5.5 slower\n            path = f\"{rel}{os.sep}{basename}\"\n        else:\n            return False\n\n        if not System.is_unix():\n            path = normalize_file(path)\n        return path", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns.matches_DvcIgnorePatterns.__bool__.return.bool_self_pattern_list_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnorePatterns.matches_DvcIgnorePatterns.__bool__.return.bool_self_pattern_list_", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 94, "end_line": 147, "span_ids": ["DvcIgnorePatterns.matches", "DvcIgnorePatterns.__eq__", "DvcIgnorePatterns.__bool__", "DvcIgnorePatterns.match_details", "DvcIgnorePatterns.ignore", "DvcIgnorePatterns.__hash__", "DvcIgnorePatterns._ignore_details"], "tokens": 388}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnorePatterns(DvcIgnore):\n\n    def matches(self, dirname, basename, is_dir=False):\n        path = self._get_normalize_path(dirname, basename)\n        if not path:\n            return False\n        return self.ignore(path, is_dir)\n\n    def ignore(self, path, is_dir):\n        result = False\n        if is_dir:\n            path_dir = f\"{path}/\"\n            for ignore, pattern in self.ignore_spec:\n                if pattern.match(path) or pattern.match(path_dir):\n                    result = ignore\n        else:\n            for ignore, pattern in self.ignore_spec:\n                if pattern.match(path):\n                    result = ignore\n        return result\n\n    def match_details(self, dirname, basename, is_dir=False):\n        path = self._get_normalize_path(dirname, basename)\n        if not path:\n            return False\n        return self._ignore_details(path, is_dir)\n\n    def _ignore_details(self, path, is_dir):\n        result = []\n        for ignore, pattern in zip(self.regex_pattern_list, self.pattern_list):\n            regex = re.compile(ignore[0])\n            # skip system pattern\n            if not pattern.file_info:\n                continue\n            if is_dir:\n                path_dir = f\"{path}/\"\n                if regex.match(path) or regex.match(path_dir):\n                    result.append(pattern.file_info)\n            else:\n                if regex.match(path):\n                    result.append(pattern.file_info)\n        return result\n\n    def __hash__(self):\n        return hash(self.dirname + \":\" + str(self.pattern_list))\n\n    def __eq__(self, other):\n        if not isinstance(other, DvcIgnorePatterns):\n            return NotImplemented\n        return (self.dirname == other.dirname) & (\n            [pattern.patterns for pattern in self.pattern_list]\n            == [pattern.patterns for pattern in other.pattern_list]\n        )\n\n    def __bool__(self):\n        return bool(self.pattern_list)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_CheckIgnoreResult_DvcIgnoreFilterNoop.is_ignored.return.False": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_CheckIgnoreResult_DvcIgnoreFilterNoop.is_ignored.return.False", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 150, "end_line": 176, "span_ids": ["impl:3", "DvcIgnoreFilterNoop.is_ignored", "DvcIgnoreFilterNoop.check_ignore", "_no_match", "DvcIgnoreFilterNoop", "DvcIgnoreFilterNoop.is_ignored_dir", "DvcIgnoreFilterNoop.__init__", "DvcIgnoreFilterNoop.__call__", "DvcIgnoreFilterNoop.is_ignored_file"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "CheckIgnoreResult = namedtuple(\n    \"CheckIgnoreResult\", [\"file\", \"match\", \"patterns\"]\n)\n\n\ndef _no_match(path):\n    return CheckIgnoreResult(path, False, [\"::\"])\n\n\nclass DvcIgnoreFilterNoop:\n    def __init__(self, tree, root_dir):\n        pass\n\n    def __call__(self, root, dirs, files, **kwargs):\n        return dirs, files\n\n    def is_ignored_dir(self, _):\n        return False\n\n    def is_ignored_file(self, _):\n        return False\n\n    def check_ignore(self, path):\n        return _no_match(path)\n\n    def is_ignored(self, _):\n        return False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter_DvcIgnoreFilter.__init__.self__update_self_root_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter_DvcIgnoreFilter.__init__.self__update_self_root_di", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 179, "end_line": 192, "span_ids": ["DvcIgnoreFilter", "DvcIgnoreFilter.__init__"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnoreFilter:\n    def __init__(self, tree, root_dir):\n        from dvc.repo import Repo\n\n        default_ignore_patterns = [\".hg/\", \".git/\", \"{}/\".format(Repo.DVC_DIR)]\n\n        self.tree = tree\n        self.root_dir = root_dir\n        self.ignores_trie_tree = PathStringTrie()\n        self.ignores_trie_tree[root_dir] = DvcIgnorePatterns(\n            default_ignore_patterns, root_dir\n        )\n        self._ignored_subrepos = PathStringTrie()\n        self._update(self.root_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter.__call___DvcIgnoreFilter._get_trie_pattern.return.self_ignores_trie_tree_ge": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter.__call___DvcIgnoreFilter._get_trie_pattern.return.self_ignores_trie_tree_ge", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 250, "end_line": 283, "span_ids": ["DvcIgnoreFilter._get_trie_pattern", "DvcIgnoreFilter.__call__"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnoreFilter:\n\n    def __call__(self, root, dirs, files, ignore_subrepos=True):\n        for dname in dirs:\n            self._update_sub_repo(os.path.join(root, dname))\n\n        ignore_pattern = self._get_trie_pattern(root)\n        if ignore_pattern:\n            dirs, files = ignore_pattern(root, dirs, files)\n            if not ignore_subrepos:\n                dirs.extend(self._ignored_subrepos.get(root, []))\n        return dirs, files\n\n    def _get_trie_pattern(self, dirname):\n        ignore_pattern = self.ignores_trie_tree.get(dirname)\n        if ignore_pattern:\n            return ignore_pattern\n\n        prefix = self.ignores_trie_tree.longest_prefix(dirname).key\n        if not prefix:\n            # outside of the repo\n            return None\n\n        dirs = list(\n            takewhile(\n                lambda path: path != prefix,\n                (parent.fspath for parent in PathInfo(dirname).parents),\n            )\n        )\n        dirs.reverse()\n        dirs.append(dirname)\n\n        for parent in dirs:\n            self._update(parent)\n\n        return self.ignores_trie_tree.get(dirname)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter._is_ignored_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter._is_ignored_", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 285, "end_line": 359, "span_ids": ["DvcIgnoreFilter._outside_repo", "DvcIgnoreFilter.check_ignore", "DvcIgnoreFilter.is_ignored", "DvcIgnoreFilter._is_ignored", "DvcIgnoreFilter.is_ignored_file", "DvcIgnoreFilter._is_subrepo", "init", "DvcIgnoreFilter.is_ignored_dir"], "tokens": 559}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnoreFilter:\n\n    def _is_ignored(self, path, is_dir=False):\n        if self._outside_repo(path):\n            return False\n        dirname, basename = os.path.split(os.path.normpath(path))\n        ignore_pattern = self._get_trie_pattern(dirname)\n        if ignore_pattern:\n            return ignore_pattern.matches(dirname, basename, is_dir)\n        else:\n            return False\n\n    def _is_subrepo(self, path):\n        dirname, basename = os.path.split(os.path.normpath(path))\n        return basename in self._ignored_subrepos.get(dirname, set())\n\n    def is_ignored_dir(self, path, ignore_subrepos=True):\n        path = os.path.abspath(path)\n        if not ignore_subrepos:\n            return not self._is_subrepo(path)\n        if path == self.root_dir:\n            return False\n\n        return self._is_ignored(path, True)\n\n    def is_ignored_file(self, path):\n        path = os.path.abspath(path)\n        return self._is_ignored(path, False)\n\n    def _outside_repo(self, path):\n        path = PathInfo(path)\n\n        # paths outside of the repo should be ignored\n        path = relpath(path, self.root_dir)\n        if path.startswith(\"..\") or (\n            os.name == \"nt\"\n            and not os.path.commonprefix(\n                [os.path.abspath(path), self.root_dir]\n            )\n        ):\n            return True\n        return False\n\n    def check_ignore(self, target):\n        full_target = os.path.abspath(target)\n        if not self._outside_repo(full_target):\n            dirname, basename = os.path.split(os.path.normpath(full_target))\n            pattern = self._get_trie_pattern(dirname)\n            if pattern:\n                matches = pattern.match_details(\n                    dirname, basename, os.path.isdir(full_target)\n                )\n\n                if matches:\n                    return CheckIgnoreResult(target, True, matches)\n        return _no_match(target)\n\n    def is_ignored(self, path):\n        # NOTE: can't use self.check_ignore(path).match for now, see\n        # https://github.com/iterative/dvc/issues/4555\n        return self.is_ignored_dir(path) or self.is_ignored_file(path)\n\n\ndef init(path):\n    dvcignore = os.path.join(path, DvcIgnore.DVCIGNORE_FILE)\n    if os.path.exists(dvcignore):\n        return dvcignore\n\n    with open(dvcignore, \"w\") as fobj:\n        fobj.write(\n            \"# Add patterns of files dvc should ignore, which could improve\\n\"\n            \"# the performance. Learn more at\\n\"\n            \"# https://dvc.org/doc/user-guide/dvcignore\\n\"\n        )\n\n    return dvcignore", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py_itertools_if_PKG_is_None_.else_.package.f_PKG_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py_itertools_if_PKG_is_None_.else_.package.f_PKG_", "embedding": null, "metadata": {"file_path": "dvc/info.py", "file_name": "info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["imports"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import itertools\nimport os\nimport pathlib\nimport platform\nimport uuid\n\nfrom dvc.exceptions import DvcException, NotDvcRepoError\nfrom dvc.repo import Repo\nfrom dvc.scm.base import SCMError\nfrom dvc.system import System\nfrom dvc.tree import TREES, get_tree_cls, get_tree_config\nfrom dvc.utils import error_link\nfrom dvc.utils.pkg import PKG\nfrom dvc.version import __version__\n\ntry:\n    import psutil\nexcept ImportError:\n    psutil = None\n\nif PKG is None:\n    package = \"\"\nelse:\n    package = f\"({PKG})\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py_get_dvc_info_get_dvc_info.return._n_join_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py_get_dvc_info_get_dvc_info.return._n_join_info_", "embedding": null, "metadata": {"file_path": "dvc/info.py", "file_name": "info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 27, "end_line": 67, "span_ids": ["get_dvc_info"], "tokens": 339}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def get_dvc_info():\n    info = [\n        f\"DVC version: {__version__} {package}\",\n        \"---------------------------------\",\n        f\"Platform: Python {platform.python_version()} on \"\n        f\"{platform.platform()}\",\n        f\"Supports: {_get_supported_remotes()}\",\n    ]\n\n    try:\n        repo = Repo()\n\n        # cache_dir might not exist yet (e.g. after `dvc init`), and we\n        # can't auto-create it, as it might cause issues if the user\n        # later decides to enable shared cache mode with\n        # `dvc config cache.shared group`.\n        if os.path.exists(repo.cache.local.cache_dir):\n            info.append(\n                \"Cache types: {}\".format(_get_linktype_support_info(repo))\n            )\n            if psutil:\n                fs_type = get_fs_type(repo.cache.local.cache_dir)\n                info.append(f\"Cache directory: {fs_type}\")\n        else:\n            info.append(\"Cache types: \" + error_link(\"no-dvc-cache\"))\n\n        info.append(f\"Caches: {_get_caches(repo.cache)}\")\n\n        info.append(f\"Remotes: {_get_remotes(repo.config)}\")\n\n    except NotDvcRepoError:\n        pass\n    except SCMError:\n        info.append(\"Repo: dvc, git (broken)\")\n    else:\n        root_directory = repo.root_dir\n        if psutil:\n            fs_root = get_fs_type(os.path.abspath(root_directory))\n            info.append(f\"Workspace directory: {fs_root}\")\n        info.append(\"Repo: {}\".format(_get_dvc_repo_info(repo)))\n    return \"\\n\".join(info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py__get_linktype_support_info__get_linktype_support_info.return._join_cache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py__get_linktype_support_info__get_linktype_support_info.return._join_cache_", "embedding": null, "metadata": {"file_path": "dvc/info.py", "file_name": "info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 66, "end_line": 95, "span_ids": ["_get_linktype_support_info"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_linktype_support_info(repo):\n\n    links = {\n        \"reflink\": (System.reflink, None),\n        \"hardlink\": (System.hardlink, System.is_hardlink),\n        \"symlink\": (System.symlink, System.is_symlink),\n    }\n\n    fname = \".\" + str(uuid.uuid4())\n    src = os.path.join(repo.cache.local.cache_dir, fname)\n    open(src, \"w\").close()\n    dst = os.path.join(repo.root_dir, fname)\n\n    cache = []\n\n    for name, (link, is_link) in links.items():\n        try:\n            link(src, dst)\n            status = \"supported\"\n            if is_link and not is_link(dst):\n                status = \"broken\"\n            os.unlink(dst)\n        except DvcException:\n            status = \"not supported\"\n\n        if status == \"supported\":\n            cache.append(name)\n    os.remove(src)\n\n    return \", \".join(cache)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py__get_supported_remotes_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py__get_supported_remotes_", "embedding": null, "metadata": {"file_path": "dvc/info.py", "file_name": "info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 122, "end_line": 162, "span_ids": ["get_fs_type", "_get_supported_remotes", "_get_dvc_repo_info"], "tokens": 259}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_supported_remotes():\n\n    supported_remotes = []\n    for tree_cls in TREES:\n        if not tree_cls.get_missing_deps():\n            supported_remotes.append(tree_cls.scheme)\n\n    if len(supported_remotes) == len(TREES):\n        return \"All remotes\"\n\n    if len(supported_remotes) == 1:\n        return supported_remotes\n\n    return \", \".join(supported_remotes)\n\n\ndef get_fs_type(path):\n\n    partition = {\n        pathlib.Path(part.mountpoint): (part.fstype + \" on \" + part.device)\n        for part in psutil.disk_partitions(all=True)\n    }\n\n    # need to follow the symlink: https://github.com/iterative/dvc/issues/5065\n    path = pathlib.Path(path).resolve()\n\n    for parent in itertools.chain([path], path.parents):\n        if parent in partition:\n            return partition[parent]\n    return (\"unknown\", \"none\")\n\n\ndef _get_dvc_repo_info(self):\n    if self.config.get(\"core\", {}).get(\"no_scm\", False):\n        return \"dvc (no_scm)\"\n\n    if self.root_dir != self.scm.root_dir:\n        return \"dvc (subdir), git\"\n\n    return \"dvc, git\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/lock.py__Manages_dvc_lock_file__LockNoop.__exit__.self_unlock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/lock.py__Manages_dvc_lock_file__LockNoop.__exit__.self_unlock_", "embedding": null, "metadata": {"file_path": "dvc/lock.py", "file_name": "lock.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 83, "span_ids": ["LockNoop.lock", "LockBase.lock", "LockBase.__exit__", "LockNoop.__enter__", "LockNoop.__exit__", "LockNoop", "LockNoop.unlock", "LockBase.unlock", "LockNoop.is_locked", "LockBase.__init__", "LockError", "LockBase.__enter__", "LockBase.is_locked", "docstring", "LockNoop.__init__", "LockBase.lockfile", "LockBase"], "tokens": 402}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages dvc lock file.\"\"\"\n\nimport hashlib\nimport os\nfrom abc import ABC, abstractmethod\nfrom datetime import timedelta\n\nimport flufl.lock\nimport zc.lockfile\nfrom funcy import retry\n\nfrom dvc.exceptions import DvcException\nfrom dvc.progress import Tqdm\nfrom dvc.utils import format_link\n\nDEFAULT_TIMEOUT = 3\n\n\nFAILED_TO_LOCK_MESSAGE = (\n    \"Unable to acquire lock. Most likely another DVC process is running or \"\n    \"was terminated abruptly. Check the page {} for other possible reasons \"\n    \"and to learn how to resolve this.\"\n).format(\n    format_link(\"https://dvc.org/doc/user-guide/troubleshooting#lock-issue\")\n)\n\n\nclass LockError(DvcException):\n    \"\"\"Thrown when unable to acquire the lock for DVC repo.\"\"\"\n\n\nclass LockBase(ABC):\n    @abstractmethod\n    def __init__(self, lockfile):\n        self._lockfile = lockfile\n\n    @property\n    def lockfile(self):\n        return self._lockfile\n\n    @abstractmethod\n    def lock(self):\n        pass\n\n    @abstractmethod\n    def unlock(self):\n        pass\n\n    @property\n    @abstractmethod\n    def is_locked(self):\n        pass\n\n    @abstractmethod\n    def __enter__(self):\n        pass\n\n    @abstractmethod\n    def __exit__(self, typ, value, tbck):\n        pass\n\n\nclass LockNoop(LockBase):\n    def __init__(\n        self, *args, **kwargs\n    ):  # pylint: disable=super-init-not-called\n        self._lock = False\n\n    def lock(self):\n        self._lock = True\n\n    def unlock(self):\n        self._lock = False\n\n    @property\n    def is_locked(self):\n        return self._lock\n\n    def __enter__(self):\n        self.lock()\n\n    def __exit__(self, typ, value, tbck):\n        self.unlock()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_logging_OutputIsIgnoredError.__init__.super___init___f_Path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_logging_OutputIsIgnoredError.__init__.super___init___f_Path_", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["OutputIsNotFileOrDirError.__init__", "OutputIsStageFileError", "OutputIsIgnoredError", "imports", "OutputDoesNotExistError.__init__", "OutputIsNotFileOrDirError", "OutputDoesNotExistError", "OutputIsIgnoredError.__init__", "OutputAlreadyTrackedError.__init__", "OutputAlreadyTrackedError", "OutputIsStageFileError.__init__"], "tokens": 355}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom copy import copy\nfrom typing import Type\nfrom urllib.parse import urlparse\n\nfrom voluptuous import Any\n\nimport dvc.prompt as prompt\nfrom dvc.cache import NamedCache\nfrom dvc.exceptions import (\n    CheckoutError,\n    CollectCacheError,\n    DvcException,\n    MergeError,\n    RemoteCacheRequiredError,\n)\nfrom dvc.hash_info import HashInfo\n\nfrom ..tree.base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\nclass OutputDoesNotExistError(DvcException):\n    def __init__(self, path):\n        msg = f\"output '{path}' does not exist\"\n        super().__init__(msg)\n\n\nclass OutputIsNotFileOrDirError(DvcException):\n    def __init__(self, path):\n        msg = f\"output '{path}' is not a file or directory\"\n        super().__init__(msg)\n\n\nclass OutputAlreadyTrackedError(DvcException):\n    def __init__(self, path):\n        msg = f\"\"\" output '{path}' is already tracked by SCM (e.g. Git).\n    You can remove it from Git, then add to DVC.\n        To stop tracking from Git:\n            git rm -r --cached '{path}'\n            git commit -m \"stop tracking {path}\" \"\"\"\n        super().__init__(msg)\n\n\nclass OutputIsStageFileError(DvcException):\n    def __init__(self, path):\n        super().__init__(f\"Stage file '{path}' cannot be an output.\")\n\n\nclass OutputIsIgnoredError(DvcException):\n    def __init__(self, match):\n        lines = \"\\n\".join(match.patterns)\n        super().__init__(f\"Path '{match.file}' is ignored by\\n{lines}\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.remove_BaseOutput.get_dir_cache.return.self_dir_cache": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.remove_BaseOutput.get_dir_cache.return.self_dir_cache", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 352, "end_line": 398, "span_ids": ["BaseOutput.get_dir_cache", "BaseOutput.move", "BaseOutput.get_files_number", "BaseOutput.unprotect", "BaseOutput.remove"], "tokens": 320}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    def remove(self, ignore_remove=False):\n        self.tree.remove(self.path_info)\n        if self.scheme != \"local\":\n            return\n\n        if ignore_remove:\n            self.ignore_remove()\n\n    def move(self, out):\n        # pylint: disable=no-member\n        if self.scheme == \"local\" and self.use_scm_ignore:\n            self.repo.scm.ignore_remove(self.fspath)\n\n        self.tree.move(self.path_info, out.path_info)\n        self.def_path = out.def_path\n        self.path_info = out.path_info\n        self.save()\n        self.commit()\n\n        if self.scheme == \"local\" and self.use_scm_ignore:\n            self.repo.scm.ignore(self.fspath)\n\n    def get_files_number(self, filter_info=None):\n        if not self.use_cache:\n            return 0\n\n        return self.cache.get_files_number(\n            self.path_info, self.hash_info, filter_info\n        )\n\n    def unprotect(self):\n        if self.exists:\n            self.tree.unprotect(self.path_info)\n\n    def get_dir_cache(self, **kwargs):\n        if not self.is_dir_checksum:\n            raise DvcException(\"cannot get dir cache for file checksum\")\n        if self.cache.changed_cache_file(self.hash_info):\n            self.repo.cloud.pull(\n                NamedCache.make(\"local\", self.hash_info.value, str(self)),\n                show_checksums=False,\n                **kwargs,\n            )\n            self.hash_info.dir_info = None\n        if not self.hash_info.dir_info:\n            self.cache.set_dir_info(self.hash_info)\n        return self.dir_cache", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.get_used_cache_BaseOutput.get_used_cache.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.get_used_cache_BaseOutput.get_used_cache.return.ret", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 461, "end_line": 507, "span_ids": ["BaseOutput.get_used_cache"], "tokens": 312}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    def get_used_cache(self, **kwargs):\n        \"\"\"Get a dumpd of the given `out`, with an entry including the branch.\n\n        The `used_cache` of an output is no more than its `info`.\n\n        In case that the given output is a directory, it will also\n        include the `info` of its files.\n        \"\"\"\n\n        if not self.use_cache:\n            return NamedCache()\n\n        if self.stage.is_repo_import:\n            cache = NamedCache()\n            (dep,) = self.stage.deps\n            cache.external[dep.repo_pair].add(dep.def_path)\n            return cache\n\n        if not self.hash_info:\n            msg = (\n                \"Output '{}'({}) is missing version info. \"\n                \"Cache for it will not be collected. \"\n                \"Use `dvc repro` to get your pipeline up to date.\".format(\n                    self, self.stage\n                )\n            )\n            if self.exists:\n                msg += (\n                    \"\\n\"\n                    \"You can also use `dvc commit {stage.addressing}` \"\n                    \"to associate existing '{out}' with {stage}.\".format(\n                        out=self, stage=self.stage\n                    )\n                )\n            logger.warning(msg)\n            return NamedCache()\n\n        ret = NamedCache.make(self.scheme, self.hash_info.value, str(self))\n\n        if not self.is_dir_checksum:\n            return ret\n\n        ret.add_child_cache(\n            self.hash_info.value, self.collect_used_dir_cache(**kwargs),\n        )\n\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput._validate_output_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput._validate_output_path_", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 525, "end_line": 579, "span_ids": ["BaseOutput._validate_output_path", "BaseOutput.merge", "BaseOutput._check_can_merge"], "tokens": 308}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    @classmethod\n    def _validate_output_path(cls, path, stage=None):\n        from dvc.dvcfile import is_valid_filename\n\n        if is_valid_filename(path):\n            raise cls.IsStageFileError(path)\n\n        if stage:\n            check = stage.repo.tree.dvcignore.check_ignore(path)\n            if check.match:\n                raise cls.IsIgnoredError(check)\n\n    def _check_can_merge(self, out):\n        if self.scheme != out.scheme:\n            raise MergeError(\"unable to auto-merge outputs of different types\")\n\n        my = self.dumpd()\n        other = out.dumpd()\n\n        ignored = [\n            self.tree.PARAM_CHECKSUM,\n            HashInfo.PARAM_SIZE,\n            HashInfo.PARAM_NFILES,\n        ]\n\n        for opt in ignored:\n            my.pop(opt, None)\n            other.pop(opt, None)\n\n        if my != other:\n            raise MergeError(\n                \"unable to auto-merge outputs with different options\"\n            )\n\n        if not out.is_dir_checksum:\n            raise MergeError(\n                \"unable to auto-merge outputs that are not directories\"\n            )\n\n    def merge(self, ancestor, other):\n        assert other\n\n        if ancestor:\n            self._check_can_merge(ancestor)\n            ancestor_info = ancestor.hash_info\n        else:\n            ancestor_info = None\n\n        self._check_can_merge(self)\n        self._check_can_merge(other)\n\n        self.hash_info = self.cache.merge(\n            ancestor_info, self.hash_info, other.hash_info\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_CloudURLInfo_HTTPURLInfo.replace.return.self_from_parts_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_CloudURLInfo_HTTPURLInfo.replace.return.self_from_parts_", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 250, "end_line": 274, "span_ids": ["HTTPURLInfo", "HTTPURLInfo.replace", "CloudURLInfo.path", "HTTPURLInfo.__init__", "CloudURLInfo"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudURLInfo(URLInfo):\n    @property\n    def path(self):\n        return self._spath.lstrip(\"/\")\n\n\nclass HTTPURLInfo(URLInfo):\n    __hash__: Callable[[\"HTTPURLInfo\"], int] = URLInfo.__hash__\n\n    def __init__(self, url):\n        p = urlparse(url)\n        stripped = p._replace(params=None, query=None, fragment=None)\n        super().__init__(stripped.geturl())\n        self.params = p.params\n        self.query = p.query\n        self.fragment = p.fragment\n\n    def replace(self, path=None):\n        return self.from_parts(\n            *self._base_parts,\n            params=self.params,\n            query=self.query,\n            fragment=self.fragment,\n            path=path,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_HTTPURLInfo.from_parts_HTTPURLInfo.from_parts.return.obj": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_HTTPURLInfo.from_parts_HTTPURLInfo.from_parts.return.obj", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 265, "end_line": 297, "span_ids": ["HTTPURLInfo.from_parts"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPURLInfo(URLInfo):\n\n    @classmethod\n    def from_parts(\n        cls,\n        scheme=None,\n        host=None,\n        user=None,\n        port=None,\n        path=\"\",\n        netloc=None,\n        params=None,\n        query=None,\n        fragment=None,\n    ):  # pylint: disable=arguments-differ\n        assert bool(host) ^ bool(netloc)\n\n        if netloc is not None:\n            return cls(\n                \"{}://{}{}{}{}{}\".format(\n                    scheme,\n                    netloc,\n                    path,\n                    (\";\" + params) if params else \"\",\n                    (\"?\" + query) if query else \"\",\n                    (\"#\" + fragment) if fragment else \"\",\n                )\n            )\n\n        obj = cls.__new__(cls)\n        obj._fill_parts(scheme, host, user, port, path)\n        obj.params = params\n        obj.query = query\n        obj.fragment = fragment\n        return obj", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/pathspec_math.py__Path_Specification_Patt__match_all_level.return.True_rule": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/pathspec_math.py__Path_Specification_Patt__match_all_level.return.True_rule", "embedding": null, "metadata": {"file_path": "dvc/pathspec_math.py", "file_name": "pathspec_math.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 36, "span_ids": ["_match_all_level", "_is_comment", "_remove_slash", "_not_ignore", "docstring"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# Path Specification Pattern Math\n# Including changing base dir of path specification patterns and merging\n# of two path specification patterns with different base\n# All the operations follow the documents of `gitignore`\nimport os\nfrom collections import namedtuple\n\nfrom pathspec.util import normalize_file\n\nfrom dvc.utils import relpath\n\nPatternInfo = namedtuple(\"PatternInfo\", [\"patterns\", \"file_info\"])\n\n\ndef _not_ignore(rule):\n    return (True, rule[1:]) if rule.startswith(\"!\") else (False, rule)\n\n\ndef _is_comment(rule):\n    return rule.startswith(\"#\")\n\n\ndef _remove_slash(rule):\n    if rule.startswith(\"\\\\\"):\n        return rule[1:]\n    return rule\n\n\ndef _match_all_level(rule):\n    if rule[:-1].find(\"/\") >= 0 and not rule.startswith(\"**/\"):\n        if rule.startswith(\"/\"):\n            rule = rule[1:]\n        return False, rule\n    if rule.startswith(\"**/\"):\n        rule = rule[3:]\n    return True, rule", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/pathspec_math.py_change_rule__change_dirname.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/pathspec_math.py_change_rule__change_dirname.return._", "embedding": null, "metadata": {"file_path": "dvc/pathspec_math.py", "file_name": "pathspec_math.py", "file_type": "text/x-python", "category": "implementation", "start_line": 39, "end_line": 68, "span_ids": ["change_rule", "_change_dirname"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def change_rule(rule, rel):\n    rule = rule.strip()\n    if _is_comment(rule):\n        return rule\n    not_ignore, rule = _not_ignore(rule)\n    match_all, rule = _match_all_level(rule)\n    rule = _remove_slash(rule)\n    if not match_all:\n        rule = f\"/{rule}\"\n    else:\n        rule = f\"/**/{rule}\"\n    if not_ignore:\n        rule = f\"!/{rel}{rule}\"\n    else:\n        rule = f\"/{rel}{rule}\"\n    rule = normalize_file(rule)\n    return rule\n\n\ndef _change_dirname(dirname, pattern_list, new_dirname):\n    if new_dirname == dirname:\n        return pattern_list\n    rel = relpath(dirname, new_dirname)\n    if rel.startswith(\"..\"):\n        raise ValueError(\"change dirname can only change to parent path\")\n\n    return [\n        PatternInfo(change_rule(rule.patterns, rel), rule.file_info)\n        for rule in pattern_list\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/pathspec_math.py_merge_patterns_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/pathspec_math.py_merge_patterns_", "embedding": null, "metadata": {"file_path": "dvc/pathspec_math.py", "file_name": "pathspec_math.py", "file_type": "text/x-python", "category": "implementation", "start_line": 71, "end_line": 94, "span_ids": ["merge_patterns"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def merge_patterns(pattern_a, prefix_a, pattern_b, prefix_b):\n    \"\"\"\n    Merge two path specification patterns.\n\n    This implementation merge two path specification patterns on different\n    bases. It returns the longest common parent directory, and the patterns\n    based on this new base directory.\n    \"\"\"\n    if not pattern_a:\n        return pattern_b, prefix_b\n    elif not pattern_b:\n        return pattern_a, prefix_a\n\n    longest_common_dir = os.path.commonpath([prefix_a, prefix_b])\n    new_pattern_a = _change_dirname(prefix_a, pattern_a, longest_common_dir)\n    new_pattern_b = _change_dirname(prefix_b, pattern_b, longest_common_dir)\n\n    if len(prefix_a) <= len(prefix_b):\n        merged_pattern = new_pattern_a + new_pattern_b\n    else:\n        merged_pattern = new_pattern_b + new_pattern_a\n\n    return merged_pattern, longest_common_dir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/__init__.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/__init__.py__", "embedding": null, "metadata": {"file_path": "dvc/remote/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 11, "span_ids": ["imports", "get_remote"], "tokens": 59}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from ..tree import get_cloud_tree\nfrom .base import Remote\nfrom .local import LocalRemote\n\n\ndef get_remote(repo, **kwargs):\n    tree = get_cloud_tree(repo, **kwargs)\n    if tree.scheme == \"local\":\n        return LocalRemote(tree)\n    return Remote(tree)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/local.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/local.py__", "embedding": null, "metadata": {"file_path": "dvc/remote/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["LocalRemote", "imports"], "tokens": 39}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from .base import Remote\nfrom .index import RemoteIndexNoop\n\n\nclass LocalRemote(Remote):\n    INDEX_CLS = RemoteIndexNoop  # type: ignore[assignment]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.find_outs_by_path_Repo.repo_tree.return.RepoTree_self_subrepos_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.find_outs_by_path_Repo.repo_tree.return.RepoTree_self_subrepos_s", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 382, "end_line": 416, "span_ids": ["Repo.repo_tree", "Repo.is_dvc_internal", "Repo.find_outs_by_path", "Repo.find_out_by_relpath"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    def find_outs_by_path(self, path, outs=None, recursive=False, strict=True):\n        # using `outs_graph` to ensure graph checks are run\n        outs = outs or self.outs_graph\n\n        abs_path = os.path.abspath(path)\n        path_info = PathInfo(abs_path)\n        match = path_info.__eq__ if strict else path_info.isin_or_eq\n\n        def func(out):\n            if out.scheme == \"local\" and match(out.path_info):\n                return True\n\n            if recursive and out.path_info.isin(path_info):\n                return True\n\n            return False\n\n        matched = list(filter(func, outs))\n        if not matched:\n            raise OutputNotFoundError(path, self)\n\n        return matched\n\n    def find_out_by_relpath(self, relpath):\n        path = os.path.join(self.root_dir, relpath)\n        (out,) = self.find_outs_by_path(path)\n        return out\n\n    def is_dvc_internal(self, path):\n        path_parts = os.path.normpath(path).split(os.path.sep)\n        return self.DVC_DIR in path_parts\n\n    @cached_property\n    def repo_tree(self):\n        return RepoTree(self, subrepos=self.subrepos, fetch=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.open_by_relpath_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.open_by_relpath_", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 548, "end_line": 574, "span_ids": ["Repo._reset", "Repo.open_by_relpath", "Repo.close"], "tokens": 226}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    @contextmanager\n    def open_by_relpath(self, path, remote=None, mode=\"r\", encoding=None):\n        \"\"\"Opens a specified resource as a file descriptor\"\"\"\n\n        tree = RepoTree(self, stream=True, subrepos=True)\n        path = PathInfo(self.root_dir) / path\n        try:\n            with self.state:\n                with tree.open(\n                    path, mode=mode, encoding=encoding, remote=remote,\n                ) as fobj:\n                    yield fobj\n        except FileNotFoundError as exc:\n            raise FileMissingError(path) from exc\n        except IsADirectoryError as exc:\n            raise DvcIsADirectoryError(f\"'{path}' is a directory\") from exc\n\n    def close(self):\n        self.scm.close()\n\n    def _reset(self):\n        self.__dict__.pop(\"outs_trie\", None)\n        self.__dict__.pop(\"outs_graph\", None)\n        self.__dict__.pop(\"graph\", None)\n        self.__dict__.pop(\"stages\", None)\n        self.__dict__.pop(\"pipelines\", None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/checkout.py_checkout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/checkout.py_checkout_", "embedding": null, "metadata": {"file_path": "dvc/repo/checkout.py", "file_name": "checkout.py", "file_type": "text/x-python", "category": "implementation", "start_line": 74, "end_line": 125, "span_ids": ["checkout"], "tokens": 292}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\ndef checkout(\n    self,\n    targets=None,\n    with_deps=False,\n    force=False,\n    relink=False,\n    recursive=False,\n    allow_missing=False,\n    **kwargs,\n):\n\n    unused = []\n    stats = {\n        \"added\": [],\n        \"deleted\": [],\n        \"modified\": [],\n        \"failed\": [],\n    }\n    if not targets:\n        targets = [None]\n        unused = _get_unused_links(self)\n\n    stats[\"deleted\"] = [_fspath_dir(u) for u in unused]\n    self.state.remove_links(unused)\n\n    if isinstance(targets, str):\n        targets = [targets]\n\n    pairs = _collect_pairs(self, targets, with_deps, recursive)\n    total = get_all_files_numbers(pairs)\n    with Tqdm(\n        total=total, unit=\"file\", desc=\"Checkout\", disable=total == 0\n    ) as pbar:\n        for stage, filter_info in pairs:\n            result = stage.checkout(\n                force=force,\n                progress_callback=pbar.update_msg,\n                relink=relink,\n                filter_info=filter_info,\n                allow_missing=allow_missing,\n                **kwargs,\n            )\n            for key, items in result.items():\n                stats[key].extend(_fspath_dir(path) for path in items)\n\n    if stats.get(\"failed\"):\n        raise CheckoutError(stats[\"failed\"], stats)\n\n    del stats[\"failed\"]\n    return stats", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/collect.py_logging__collect_outs.return.set_filter_output_filter_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/collect.py_logging__collect_outs.return.set_filter_output_filter_", "embedding": null, "metadata": {"file_path": "dvc/repo/collect.py", "file_name": "collect.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 27, "span_ids": ["imports", "_collect_outs"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom typing import Callable, Iterable, Set, Tuple\n\nfrom dvc.output.base import BaseOutput\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\nfrom dvc.tree.repo import RepoTree\nfrom dvc.types import DvcPath\n\nlogger = logging.getLogger(__name__)\n\n\nFilterFn = Callable[[BaseOutput], bool]\nOutputs = Set[BaseOutput]\nDvcPaths = Set[DvcPath]\n\n\ndef _collect_outs(\n    repo: Repo, output_filter: FilterFn = None, deps: bool = False,\n) -> Outputs:\n    outs = {\n        out\n        for stage in repo.graph  # using `graph` to ensure graph checks run\n        for out in (stage.deps if deps else stage.outs)\n    }\n    return set(filter(output_filter, outs)) if output_filter else outs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/collect.py__collect_paths__collect_paths.return.target_infos": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/collect.py__collect_paths__collect_paths.return.target_infos", "embedding": null, "metadata": {"file_path": "dvc/repo/collect.py", "file_name": "collect.py", "file_type": "text/x-python", "category": "implementation", "start_line": 30, "end_line": 52, "span_ids": ["_collect_paths"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _collect_paths(\n    repo: Repo,\n    targets: Iterable[str],\n    recursive: bool = False,\n    rev: str = None,\n):\n    path_infos = {PathInfo(os.path.abspath(target)) for target in targets}\n    tree = RepoTree(repo)\n\n    target_infos = set()\n    for path_info in path_infos:\n\n        if recursive and tree.isdir(path_info):\n            target_infos.update(set(tree.walk_files(path_info)))\n\n        if not tree.isfile(path_info):\n            if not recursive:\n                logger.warning(\n                    \"'%s' was not found at: '%s'.\", path_info, rev,\n                )\n            continue\n        target_infos.add(path_info)\n    return target_infos", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/collect.py__filter_duplicates_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/collect.py__filter_duplicates_", "embedding": null, "metadata": {"file_path": "dvc/repo/collect.py", "file_name": "collect.py", "file_type": "text/x-python", "category": "implementation", "start_line": 55, "end_line": 88, "span_ids": ["collect", "_filter_duplicates"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _filter_duplicates(\n    outs: Outputs, path_infos: DvcPaths\n) -> Tuple[Outputs, DvcPaths]:\n    res_outs: Outputs = set()\n    res_infos = set(path_infos)\n\n    for out in outs:\n        if out.path_info in path_infos:\n            res_outs.add(out)\n            res_infos.remove(out.path_info)\n\n    return res_outs, res_infos\n\n\ndef collect(\n    repo: Repo,\n    deps: bool = False,\n    targets: Iterable[str] = None,\n    output_filter: FilterFn = None,\n    rev: str = None,\n    recursive: bool = False,\n) -> Tuple[Outputs, DvcPaths]:\n    assert targets or output_filter\n\n    outs: Outputs = _collect_outs(repo, output_filter=output_filter, deps=deps)\n\n    if not targets:\n        path_infos: DvcPaths = set()\n        return outs, path_infos\n\n    target_infos = _collect_paths(repo, targets, recursive=recursive, rev=rev)\n\n    return _filter_duplicates(outs, target_infos)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/diff.py_logging_diff.return.ret_if_any_ret_values_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/diff.py_logging_diff.return.ret_if_any_ret_values_", "embedding": null, "metadata": {"file_path": "dvc/repo/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 79, "span_ids": ["imports", "diff"], "tokens": 605}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nfrom dvc.exceptions import PathMissingError\nfrom dvc.repo import locked\nfrom dvc.tree.local import LocalTree\nfrom dvc.tree.repo import RepoTree\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\ndef diff(self, a_rev=\"HEAD\", b_rev=None, targets=None):\n    \"\"\"\n    By default, it compares the workspace with the last commit's tree.\n\n    This implementation differs from `git diff` since DVC doesn't have\n    the concept of `index`, but it keeps the same interface, thus,\n    `dvc diff` would be the same as `dvc diff HEAD`.\n    \"\"\"\n\n    if self.scm.no_commits:\n        return {}\n\n    b_rev = b_rev if b_rev else \"workspace\"\n    results = {}\n    missing_targets = {}\n    for rev in self.brancher(revs=[a_rev, b_rev]):\n        if rev == \"workspace\" and rev != b_rev:\n            # brancher always returns workspace, but we only need to compute\n            # workspace paths/checksums if b_rev was None\n            continue\n\n        targets_path_infos = None\n        if targets is not None:\n            # convert targets to path_infos, and capture any missing targets\n            targets_path_infos, missing_targets[rev] = _targets_to_path_infos(\n                self, targets\n            )\n\n        results[rev] = _paths_checksums(self, targets_path_infos)\n\n    if targets is not None:\n        # check for overlapping missing targets between a_rev and b_rev\n        for target in set(missing_targets[a_rev]) & set(\n            missing_targets[b_rev]\n        ):\n            raise PathMissingError(target, self)\n\n    old = results[a_rev]\n    new = results[b_rev]\n\n    # Compare paths between the old and new tree.\n    # set() efficiently converts dict keys to a set\n    added = sorted(set(new) - set(old))\n    deleted_or_missing = set(old) - set(new)\n    if b_rev == \"workspace\":\n        # missing status is only applicable when diffing local workspace\n        # against a commit\n        missing = sorted(_filter_missing(self, deleted_or_missing))\n    else:\n        missing = []\n    deleted = sorted(deleted_or_missing - set(missing))\n    modified = sorted(set(old) & set(new))\n\n    ret = {\n        \"added\": [{\"path\": path, \"hash\": new[path]} for path in added],\n        \"deleted\": [{\"path\": path, \"hash\": old[path]} for path in deleted],\n        \"modified\": [\n            {\"path\": path, \"hash\": {\"old\": old[path], \"new\": new[path]}}\n            for path in modified\n            if old[path] != new[path]\n        ],\n        \"not in cache\": [\n            {\"path\": path, \"hash\": old[path]} for path in missing\n        ],\n    }\n\n    return ret if any(ret.values()) else {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/diff.py__paths_checksums__output_paths.for_stage_in_repo_stages_.for_output_in_stage_outs_.if__exists_output_.if_output_is_dir_checksum.yield_from__dir_output_pa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/diff.py__paths_checksums__output_paths.for_stage_in_repo_stages_.for_output_in_stage_outs_.if__exists_output_.if_output_is_dir_checksum.yield_from__dir_output_pa", "embedding": null, "metadata": {"file_path": "dvc/repo/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 82, "end_line": 132, "span_ids": ["_paths_checksums", "_output_paths"], "tokens": 309}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _paths_checksums(repo, targets):\n    \"\"\"\n    A dictionary of checksums addressed by relpaths collected from\n    the current tree outputs.\n\n    To help distinguish between a directory and a file output,\n    the former one will come with a trailing slash in the path:\n\n        directory: \"data/\"\n        file:      \"data\"\n    \"\"\"\n\n    return dict(_output_paths(repo, targets))\n\n\ndef _output_paths(repo, targets):\n    repo_tree = RepoTree(repo, stream=True)\n    on_working_tree = isinstance(repo.tree, LocalTree)\n\n    def _exists(output):\n        if on_working_tree:\n            return output.exists\n        return True\n\n    def _to_path(output):\n        return (\n            str(output)\n            if not output.is_dir_checksum\n            else os.path.join(str(output), \"\")\n        )\n\n    def _to_checksum(output):\n        if on_working_tree:\n            return repo.cache.local.tree.get_hash(output.path_info).value\n        return output.hash_info.value\n\n    for stage in repo.stages:\n        for output in stage.outs:\n            if _exists(output):\n                yield_output = targets is None or any(\n                    output.path_info.isin_or_eq(target) for target in targets\n                )\n\n                if yield_output:\n                    yield _to_path(output), _to_checksum(output)\n\n                if output.is_dir_checksum and (\n                    yield_output\n                    or any(target.isin(output.path_info) for target in targets)\n                ):\n                    yield from _dir_output_paths(repo_tree, output, targets)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/diff.py__dir_output_paths_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/diff.py__dir_output_paths_", "embedding": null, "metadata": {"file_path": "dvc/repo/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 135, "end_line": 171, "span_ids": ["_filter_missing", "_targets_to_path_infos", "_dir_output_paths"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _dir_output_paths(repo_tree, output, targets=None):\n    from dvc.config import NoRemoteError\n\n    try:\n        for fname in repo_tree.walk_files(output.path_info):\n            if targets is None or any(\n                fname.isin_or_eq(target) for target in targets\n            ):\n                yield str(fname), repo_tree.get_file_hash(fname).value\n    except NoRemoteError:\n        logger.warning(\"dir cache entry for '%s' is missing\", output)\n\n\ndef _filter_missing(repo, paths):\n    repo_tree = RepoTree(repo, stream=True)\n    for path in paths:\n        metadata = repo_tree.metadata(path)\n        if metadata.is_dvc:\n            out = metadata.outs[0]\n            if out.status().get(str(out)) == \"not in cache\":\n                yield path\n\n\ndef _targets_to_path_infos(repo, targets):\n    path_infos = []\n    missing = []\n\n    repo_tree = RepoTree(repo, stream=True)\n\n    for target in targets:\n        if repo_tree.exists(target):\n            path_infos.append(repo_tree.metadata(target).path_info)\n        else:\n            missing.append(target)\n\n    return path_infos, missing", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/diff.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/diff.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 35, "span_ids": ["imports", "diff"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.utils.diff import diff as _diff\nfrom dvc.utils.diff import format_dict\n\nlogger = logging.getLogger(__name__)\n\n\ndef diff(repo, *args, a_rev=None, b_rev=None, **kwargs):\n    from dvc.repo.experiments.show import _collect_experiment_commit\n\n    if repo.scm.no_commits:\n        return {}\n\n    if a_rev:\n        old = _collect_experiment_commit(repo, a_rev)\n    else:\n        old = _collect_experiment_commit(repo, \"HEAD\")\n\n    if b_rev:\n        new = _collect_experiment_commit(repo, b_rev)\n    else:\n        new = _collect_experiment_commit(repo, \"workspace\")\n\n    with_unchanged = kwargs.pop(\"all\", False)\n\n    return {\n        key: _diff(\n            format_dict(old[key]),\n            format_dict(new[key]),\n            with_unchanged=with_unchanged,\n        )\n        for key in [\"metrics\", \"params\"]\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/run.py_logging__parse_params.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/run.py_logging__parse_params.return.ret", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 33, "span_ids": ["imports", "_parse_params"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom typing import Iterable, Optional\n\nfrom dvc.exceptions import InvalidArgumentError\nfrom dvc.repo import locked\n\nlogger = logging.getLogger(__name__)\n\n\ndef _parse_params(path_params: Iterable):\n    from ruamel.yaml import YAMLError\n\n    from dvc.dependency.param import ParamsDependency\n    from dvc.utils.serialize import loads_yaml\n\n    ret = {}\n    for path_param in path_params:\n        path, _, params_str = path_param.rpartition(\":\")\n        # remove empty strings from params, on condition such as `-p \"file1:\"`\n        params = {}\n        for param_str in filter(bool, params_str.split(\",\")):\n            try:\n                # interpret value strings using YAML rules\n                key, value = param_str.split(\"=\")\n                params[key] = loads_yaml(value)\n            except (ValueError, YAMLError):\n                raise InvalidArgumentError(\n                    f\"Invalid param/value pair '{param_str}'\"\n                )\n        if not path:\n            path = ParamsDependency.DEFAULT_PARAMS_FILE\n        ret[path] = params\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/run.py_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/run.py_run_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 36, "end_line": 63, "span_ids": ["run"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\ndef run(\n    repo,\n    targets: Optional[Iterable] = None,\n    params: Optional[Iterable] = None,\n    run_all: Optional[bool] = False,\n    jobs: Optional[int] = 1,\n    tmp_dir: Optional[bool] = False,\n    **kwargs,\n) -> dict:\n    \"\"\"Reproduce the specified targets as an experiment.\n\n    Accepts the same additional kwargs as Repo.reproduce.\n\n    Returns a dict mapping new experiment SHAs to the results\n    of `repro` for that experiment.\n    \"\"\"\n    if run_all:\n        return repo.experiments.reproduce_queued(jobs=jobs)\n\n    if params:\n        params = _parse_params(params)\n    else:\n        params = []\n    return repo.experiments.reproduce_one(\n        targets=targets, params=params, tmp_dir=tmp_dir, **kwargs\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/show.py_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/show.py_show_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 74, "end_line": 130, "span_ids": ["show"], "tokens": 357}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\ndef show(\n    repo,\n    all_branches=False,\n    all_tags=False,\n    revs=None,\n    all_commits=False,\n    sha_only=False,\n):\n    res = defaultdict(OrderedDict)\n\n    if revs is None:\n        revs = [repo.scm.get_rev()]\n\n    revs = OrderedDict(\n        (rev, None)\n        for rev in repo.brancher(\n            revs=revs,\n            all_branches=all_branches,\n            all_tags=all_tags,\n            all_commits=all_commits,\n            sha_only=True,\n        )\n    )\n\n    for rev in revs:\n        res[rev][\"baseline\"] = _collect_experiment_commit(\n            repo, rev, sha_only=sha_only\n        )\n\n        if rev == \"workspace\":\n            continue\n\n        ref_info = ExpRefInfo(baseline_sha=rev)\n        commits = [\n            (ref, repo.scm.resolve_commit(ref))\n            for ref in repo.scm.iter_refs(base=str(ref_info))\n        ]\n        for exp_ref, _ in sorted(\n            commits, key=lambda x: x[1].committed_date, reverse=True,\n        ):\n            ref_info = ExpRefInfo.from_ref(exp_ref)\n            assert ref_info.baseline_sha == rev\n            _collect_experiment_branch(\n                res[rev], repo, exp_ref, rev, sha_only=sha_only\n            )\n\n    # collect queued (not yet reproduced) experiments\n    for stash_rev, entry in repo.experiments.stash_revs.items():\n        if entry.baseline_rev in revs:\n            experiment = _collect_experiment_commit(\n                repo, stash_rev, stash=True\n            )\n            res[entry.baseline_rev][stash_rev] = experiment\n\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/fetch.py_logging_fetch.return.downloaded": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/fetch.py_logging_fetch.return.downloaded", "embedding": null, "metadata": {"file_path": "dvc/repo/fetch.py", "file_name": "fetch.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 79, "span_ids": ["fetch", "imports"], "tokens": 405}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.config import NoRemoteError\nfrom dvc.exceptions import DownloadError\nfrom dvc.scm.base import CloneError\n\nfrom . import locked\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\ndef fetch(\n    self,\n    targets=None,\n    jobs=None,\n    remote=None,\n    all_branches=False,\n    show_checksums=False,\n    with_deps=False,\n    all_tags=False,\n    recursive=False,\n    all_commits=False,\n    run_cache=False,\n    revs=None,\n):\n    \"\"\"Download data items from a cloud and imported repositories\n\n    Returns:\n        int: number of successfully downloaded files\n\n    Raises:\n        DownloadError: thrown when there are failed downloads, either\n            during `cloud.pull` or trying to fetch imported files\n\n        config.NoRemoteError: thrown when downloading only local files and no\n            remote is configured\n    \"\"\"\n\n    if isinstance(targets, str):\n        targets = [targets]\n\n    used = self.used_cache(\n        targets,\n        all_branches=all_branches,\n        all_tags=all_tags,\n        all_commits=all_commits,\n        with_deps=with_deps,\n        force=True,\n        remote=remote,\n        jobs=jobs,\n        recursive=recursive,\n        revs=revs,\n    )\n\n    downloaded = 0\n    failed = 0\n\n    try:\n        if run_cache:\n            self.stage_cache.pull(remote)\n        downloaded += self.cloud.pull(\n            used, jobs, remote=remote, show_checksums=show_checksums,\n        )\n    except NoRemoteError:\n        if not used.external and used[\"local\"]:\n            raise\n    except DownloadError as exc:\n        failed += exc.amount\n\n    for (repo_url, repo_rev), files in used.external.items():\n        d, f = _fetch_external(self, repo_url, repo_rev, files, jobs)\n        downloaded += d\n        failed += f\n\n    if failed:\n        raise DownloadError(failed)\n\n    return downloaded", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/ls.py_from_itertools_import_cha_ls.with_external_repo_url_r.return.ret_list": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/ls.py_from_itertools_import_cha_ls.with_external_repo_url_r.return.ret_list", "embedding": null, "metadata": {"file_path": "dvc/repo/ls.py", "file_name": "ls.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 50, "span_ids": ["imports", "ls"], "tokens": 344}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from itertools import chain\n\nfrom dvc.exceptions import PathMissingError\nfrom dvc.path_info import PathInfo\n\n\ndef ls(\n    url, path=None, rev=None, recursive=None, dvc_only=False,\n):\n    \"\"\"Methods for getting files and outputs for the repo.\n\n    Args:\n        url (str): the repo url\n        path (str, optional): relative path into the repo\n        rev (str, optional): SHA commit, branch or tag name\n        recursive (bool, optional): recursively walk the repo\n        dvc_only (bool, optional): show only DVC-artifacts\n\n    Returns:\n        list of `entry`\n\n    Notes:\n        `entry` is a dictionary with structure\n        {\n            \"path\": str,\n            \"isout\": bool,\n            \"isdir\": bool,\n            \"isexec\": bool,\n        }\n    \"\"\"\n    from dvc.external_repo import external_repo\n\n    # use our own RepoTree instance instead of repo.repo_tree since we want to\n    # fetch directory listings, but don't want to fetch file contents.\n    with external_repo(url, rev, fetch=False, stream=True) as repo:\n        path_info = PathInfo(repo.root_dir)\n        if path:\n            path_info /= path\n\n        ret = _ls(repo.repo_tree, path_info, recursive, dvc_only)\n\n        if path and not ret:\n            raise PathMissingError(path, repo, dvc_only=dvc_only)\n\n        ret_list = []\n        for path, info in ret.items():\n            info[\"path\"] = path\n            ret_list.append(info)\n        ret_list.sort(key=lambda f: f[\"path\"])\n        return ret_list", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py_logging__collect_metrics.return._m_path_info_for_m_in_met": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py_logging__collect_metrics.return._m_path_info_for_m_in_met", "embedding": null, "metadata": {"file_path": "dvc/repo/metrics/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["imports", "_is_metric", "_collect_metrics"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.exceptions import (\n    MetricDoesNotExistError,\n    NoMetricsFoundError,\n    NoMetricsParsedError,\n)\nfrom dvc.repo import locked\nfrom dvc.repo.collect import collect\nfrom dvc.scm.base import SCMError\nfrom dvc.tree.repo import RepoTree\nfrom dvc.utils.serialize import YAMLFileCorruptedError, load_yaml\n\nlogger = logging.getLogger(__name__)\n\n\ndef _is_metric(out):\n    return bool(out.metric)\n\n\ndef _collect_metrics(repo, targets, revision, recursive):\n    metrics, path_infos = collect(\n        repo,\n        targets=targets,\n        output_filter=_is_metric,\n        recursive=recursive,\n        rev=revision,\n    )\n    return [m.path_info for m in metrics] + list(path_infos)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py__extract_metrics__extract_metrics.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py__extract_metrics__extract_metrics.return.ret", "embedding": null, "metadata": {"file_path": "dvc/repo/metrics/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 23, "end_line": 45, "span_ids": ["_extract_metrics"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _extract_metrics(metrics, path, rev):\n    if isinstance(metrics, (int, float)):\n        return metrics\n\n    if not isinstance(metrics, dict):\n        return None\n\n    ret = {}\n    for key, val in metrics.items():\n        m = _extract_metrics(val, path, rev)\n        if m not in (None, {}):\n            ret[key] = m\n        else:\n            logger.debug(\n                \"Could not parse '%s' metric from '%s' at '%s' \"\n                \"due to its unsupported type: '%s'\",\n                key,\n                path,\n                rev,\n                type(val).__name__,\n            )\n\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py__read_metrics__read_metrics.return.res": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/metrics/show.py__read_metrics__read_metrics.return.res", "embedding": null, "metadata": {"file_path": "dvc/repo/metrics/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 68, "span_ids": ["_read_metrics"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _read_metrics(repo, metrics, rev):\n    tree = RepoTree(repo)\n\n    res = {}\n    for metric in metrics:\n        if not tree.exists(metric):\n            continue\n\n        try:\n            val = load_yaml(metric, tree=tree)\n        except (FileNotFoundError, YAMLFileCorruptedError):\n            logger.debug(\n                \"failed to read '%s' on '%s'\", metric, rev, exc_info=True\n            )\n            continue\n\n        val = _extract_metrics(val, metric, rev)\n        if val not in (None, {}):\n            res[str(metric)] = val\n\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py__is_plot__plot_props.return.project_out_plot_PLOT_PR": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py__is_plot__plot_props.return.project_out_plot_PLOT_PR", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 151, "end_line": 172, "span_ids": ["_plot_props", "_is_plot", "_collect_plots"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _is_plot(out):\n    return bool(out.plot)\n\n\ndef _collect_plots(repo, targets=None, rev=None):\n    plots, path_infos = collect(\n        repo, output_filter=_is_plot, targets=targets, rev=rev\n    )\n    result = {plot.path_info: _plot_props(plot) for plot in plots}\n    result.update({path_info: {} for path_info in path_infos})\n    return result\n\n\ndef _plot_props(out):\n    if not out.plot:\n        raise NotAPlotError(out)\n    if isinstance(out.plot, list):\n        raise DvcException(\"Multiple plots per data file not supported.\")\n    if isinstance(out.plot, bool):\n        return {}\n\n    return project(out.plot, PLOT_PROPS)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/diff.py__revisions_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/diff.py__revisions_", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/diff.py", "file_name": "diff.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 18, "span_ids": ["_revisions", "diff"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _revisions(repo, revs, experiment):\n    revisions = revs or []\n    if experiment and len(revisions) == 1:\n        baseline = repo.experiments.get_baseline(revisions[0])\n        if baseline:\n            revisions.append(baseline[:7])\n    if len(revisions) <= 1:\n        if len(revisions) == 0 and repo.scm.is_dirty():\n            revisions.append(\"HEAD\")\n        revisions.append(\"workspace\")\n    return revisions\n\n\ndef diff(repo, *args, revs=None, experiment=False, **kwargs):\n    return repo.plots.show(\n        *args, revs=_revisions(repo, revs, experiment), **kwargs\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_Template_Template.__init__.self.filename.self_name_self_EXTENSIO": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_Template_Template.__init__.self.filename.self_name_self_EXTENSIO", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 27, "end_line": 51, "span_ids": ["Template", "Template.__init__"], "tokens": 158}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Template:\n    INDENT = 4\n    SEPARATORS = (\",\", \": \")\n    EXTENSION = \".json\"\n    ANCHOR = \"<DVC_METRIC_{}>\"\n\n    DEFAULT_CONTENT: Optional[Dict[str, Any]] = None\n    DEFAULT_NAME: Optional[str] = None\n\n    def __init__(self, content=None, name=None):\n        if content:\n            self.content = content\n        else:\n            self.content = (\n                json.dumps(\n                    self.DEFAULT_CONTENT,\n                    indent=self.INDENT,\n                    separators=self.SEPARATORS,\n                )\n                + \"\\n\"\n            )\n\n        self.name = name or self.DEFAULT_NAME\n        assert self.content and self.name\n        self.filename = self.name + self.EXTENSION", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_Template.render_Template.render.return.content": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_Template.render_Template.render.return.content", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 52, "end_line": 69, "span_ids": ["Template.render"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Template:\n\n    def render(self, data, props=None):\n        props = props or {}\n\n        if self._anchor_str(\"data\") not in self.content:\n            anchor = self.anchor(\"data\")\n            raise BadTemplateError(\n                f\"Template '{self.filename}' is not using '{anchor}' anchor\"\n            )\n\n        if props.get(\"x\"):\n            Template._check_field_exists(data, props.get(\"x\"))\n        if props.get(\"y\"):\n            Template._check_field_exists(data, props.get(\"y\"))\n\n        content = self._fill_anchor(self.content, \"data\", data)\n        content = self._fill_metadata(content, props)\n\n        return content", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_PlotTemplates_PlotTemplates.get_template.raise_TemplateNotFoundErr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_PlotTemplates_PlotTemplates.get_template.raise_TemplateNotFoundErr", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 531, "end_line": 569, "span_ids": ["PlotTemplates.get_template", "PlotTemplates.templates_dir", "PlotTemplates"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PlotTemplates:\n    TEMPLATES_DIR = \"plots\"\n    TEMPLATES = [\n        DefaultTemplate,\n        LinearTemplate,\n        ConfusionTemplate,\n        NormalizedConfusionTemplate,\n        ScatterTemplate,\n        SmoothLinearTemplate,\n    ]\n\n    @cached_property\n    def templates_dir(self):\n        return os.path.join(self.dvc_dir, self.TEMPLATES_DIR)\n\n    def get_template(self, path):\n        if os.path.exists(path):\n            return path\n\n        if self.dvc_dir and os.path.exists(self.dvc_dir):\n            t_path = os.path.join(self.templates_dir, path)\n            if os.path.exists(t_path):\n                return t_path\n\n            all_templates = [\n                os.path.join(root, file)\n                for root, _, files in os.walk(self.templates_dir)\n                for file in files\n            ]\n            matches = [\n                template\n                for template in all_templates\n                if os.path.splitext(template)[0] == t_path\n            ]\n            if matches:\n                assert len(matches) == 1\n                return matches[0]\n\n        raise TemplateNotFoundError(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/scm_context.py_scm_context_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/scm_context.py_scm_context_", "embedding": null, "metadata": {"file_path": "dvc/repo/scm_context.py", "file_name": "scm_context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 18, "span_ids": ["scm_context"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def scm_context(method):\n    def run(repo, *args, **kw):\n        try:\n            result = method(repo, *args, **kw)\n            repo.scm.reset_ignores()\n            autostage = repo.config.get(\"core\", {}).get(\"autostage\", False)\n            if autostage:\n                repo.scm.track_changed_files()\n            else:\n                repo.scm.remind_to_track()\n            repo.scm.reset_tracked_files()\n            return result\n        except Exception:\n            repo.scm.cleanup_ignores()\n            raise\n\n    return run", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/status.py_logging__local_status.return._joint_status_pairs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/status.py_logging__local_status.return._joint_status_pairs_", "embedding": null, "metadata": {"file_path": "dvc/repo/status.py", "file_name": "status.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 38, "span_ids": ["imports", "_local_status", "_joint_status"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom itertools import compress\n\nfrom funcy.py3 import cat\n\nfrom dvc.exceptions import InvalidArgumentError\n\nfrom . import locked\n\nlogger = logging.getLogger(__name__)\n\n\ndef _joint_status(pairs):\n    status_info = {}\n\n    for stage, filter_info in pairs:\n        if stage.frozen and not stage.is_repo_import:\n            logger.warning(\n                \"{} is frozen. Its dependencies are\"\n                \" not going to be shown in the status output.\".format(stage)\n            )\n        status_info.update(\n            stage.status(check_updates=True, filter_info=filter_info)\n        )\n\n    return status_info\n\n\ndef _local_status(self, targets=None, with_deps=False, recursive=False):\n    targets = targets or [None]\n    pairs = cat(\n        self.stage.collect_granular(\n            t, with_deps=with_deps, recursive=recursive\n        )\n        for t in targets\n    )\n\n    return _joint_status(pairs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.reproduce_Stage.reproduce.return.self": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.reproduce_Stage.reproduce.return.self", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 306, "end_line": 329, "span_ids": ["Stage.reproduce"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    @rwlocked(read=[\"deps\"], write=[\"outs\"])\n    def reproduce(self, interactive=False, **kwargs):\n        if not (kwargs.get(\"force\", False) or self.changed()):\n            if not isinstance(self, PipelineStage) and self.is_data_source:\n                logger.info(\"'%s' didn't change, skipping\", self.addressing)\n            else:\n                logger.info(\n                    \"Stage '%s' didn't change, skipping\", self.addressing\n                )\n            return None\n\n        msg = (\n            \"Going to reproduce {stage}. \"\n            \"Are you sure you want to continue?\".format(stage=self)\n        )\n\n        if interactive and not prompt.confirm(msg):\n            raise DvcException(\"reproduction aborted by the user\")\n\n        self.run(**kwargs)\n\n        logger.debug(f\"{self} was reproduced\")\n\n        return self", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.filter_outs_Stage.get_used_cache.return.cache": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.filter_outs_Stage.get_used_cache.return.cache", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 516, "end_line": 615, "span_ids": ["Stage.status", "Stage._status_always_changed", "Stage.checkout", "Stage._checkout", "Stage._status_stage", "Stage._status_deps", "Stage._status_outs", "Stage.already_cached", "Stage.get_all_files_number", "Stage.get_used_cache", "Stage._status", "Stage.outs_cached", "Stage.deps_cached", "Stage.filter_outs"], "tokens": 682}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    def filter_outs(self, path_info):\n        def _func(o):\n            return path_info.isin_or_eq(o.path_info)\n\n        return filter(_func, self.outs) if path_info else self.outs\n\n    @rwlocked(write=[\"outs\"])\n    def checkout(self, allow_missing=False, **kwargs):\n        stats = defaultdict(list)\n        for out in self.filter_outs(kwargs.get(\"filter_info\")):\n            key, outs = self._checkout(\n                out,\n                allow_missing=allow_missing or self.is_checkpoint,\n                **kwargs,\n            )\n            if key:\n                stats[key].extend(outs)\n        return stats\n\n    @staticmethod\n    def _checkout(out, **kwargs):\n        try:\n            result = out.checkout(**kwargs)\n            added, modified = result or (None, None)\n            if not (added or modified):\n                return None, []\n            return \"modified\" if modified else \"added\", [out.path_info]\n        except CheckoutError as exc:\n            return \"failed\", exc.target_infos\n\n    @rwlocked(read=[\"deps\", \"outs\"])\n    def status(self, check_updates=False, filter_info=None):\n        ret = []\n        show_import = self.is_repo_import and check_updates\n\n        if not self.frozen or show_import:\n            self._status_deps(ret)\n        self._status_outs(ret, filter_info=filter_info)\n        self._status_always_changed(ret)\n        self._status_stage(ret)\n        return {self.addressing: ret} if ret else {}\n\n    @staticmethod\n    def _status(entries):\n        ret = {}\n\n        for entry in entries:\n            ret.update(entry.status())\n\n        return ret\n\n    def _status_deps(self, ret):\n        deps_status = self._status(self.deps)\n        if deps_status:\n            ret.append({\"changed deps\": deps_status})\n\n    def _status_outs(self, ret, filter_info):\n        filter_outs = self.filter_outs(filter_info)\n        outs_status = self._status(filter_outs)\n        if outs_status:\n            ret.append({\"changed outs\": outs_status})\n\n    def _status_always_changed(self, ret):\n        if self.is_callback or self.always_changed or self.is_checkpoint:\n            ret.append(\"always changed\")\n\n    def _status_stage(self, ret):\n        if self.changed_stage():\n            ret.append(\"changed checksum\")\n\n    def already_cached(self):\n        return (\n            not self.changed_stage()\n            and self.deps_cached()\n            and self.outs_cached()\n        )\n\n    def deps_cached(self):\n        return all(not dep.changed() for dep in self.deps)\n\n    def outs_cached(self):\n        return all(\n            not out.changed_cache() if out.use_cache else not out.changed()\n            for out in self.outs\n        )\n\n    def get_all_files_number(self, filter_info=None):\n        return sum(\n            out.get_files_number(filter_info)\n            for out in self.filter_outs(filter_info)\n        )\n\n    def get_used_cache(self, *args, **kwargs):\n        from dvc.cache import NamedCache\n\n        cache = NamedCache()\n        for out in self.filter_outs(kwargs.get(\"filter_info\")):\n            cache.update(out.get_used_cache(*args, **kwargs))\n\n        return cache", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage._check_can_merge_Stage._check_can_merge.if_ancestor_out_and_not_s.raise_MergeError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage._check_can_merge_Stage._check_can_merge.if_ancestor_out_and_not_s.raise_MergeError_", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 542, "end_line": 556, "span_ids": ["Stage._check_can_merge"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    @staticmethod\n    def _check_can_merge(stage, ancestor_out=None):\n        if isinstance(stage, PipelineStage):\n            raise MergeError(\"unable to auto-merge pipeline stages\")\n\n        if not stage.is_data_source or stage.deps or len(stage.outs) > 1:\n            raise MergeError(\n                \"unable to auto-merge DVC-files that weren't \"\n                \"created by `dvc add`\"\n            )\n\n        if ancestor_out and not stage.outs:\n            raise MergeError(\n                \"unable to auto-merge DVC-files with deleted outputs\"\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.merge_Stage.merge.self_outs_0_merge_ancest": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.merge_Stage.merge.self_outs_0_merge_ancest", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 558, "end_line": 578, "span_ids": ["Stage.merge"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    def merge(self, ancestor, other):\n        assert other\n\n        if not other.outs:\n            return\n\n        if not self.outs:\n            self.outs = other.outs\n            return\n\n        if ancestor:\n            self._check_can_merge(ancestor)\n            outs = ancestor.outs\n            ancestor_out = outs[0] if outs else None\n        else:\n            ancestor_out = None\n\n        self._check_can_merge(self, ancestor_out)\n        self._check_can_merge(other, ancestor_out)\n\n        self.outs[0].merge(ancestor_out, other.outs[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache.save_StageCache.save.self_tree_move_PathInfo_t": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache.save_StageCache.save.self_tree_move_PathInfo_t", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 146, "end_line": 172, "span_ids": ["StageCache.save"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageCache:\n\n    def save(self, stage):\n        if not _can_hash(stage):\n            return\n\n        cache_key = _get_stage_hash(stage)\n        cache = to_single_stage_lockfile(stage)\n        cache_value = _get_cache_hash(cache)\n\n        existing_cache = self._load_cache(cache_key, cache_value)\n        cache = existing_cache or cache\n\n        for out in self._uncached_outs(stage, cache):\n            out.commit()\n\n        if existing_cache:\n            return\n\n        # sanity check\n        COMPILED_LOCK_FILE_STAGE_SCHEMA(cache)\n\n        path = PathInfo(self._get_cache_path(cache_key, cache_value))\n        self.tree.makedirs(path.parent)\n        tmp = tempfile.NamedTemporaryFile(delete=False, dir=path.parent).name\n        assert os.path.exists(path.parent)\n        assert os.path.isdir(path.parent)\n        dump_yaml(tmp, cache)\n        self.tree.move(PathInfo(tmp), path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache.restore_StageCache.restore.cached_stage_checkout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache.restore_StageCache.restore.cached_stage_checkout_", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 174, "end_line": 204, "span_ids": ["StageCache.restore"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageCache:\n\n    def restore(self, stage, run_cache=True, pull=False):\n        if not _can_hash(stage):\n            raise RunCacheNotFoundError(stage)\n\n        if (\n            not stage.changed_stage()\n            and stage.deps_cached()\n            and all(bool(out.hash_info) for out in stage.outs)\n        ):\n            cache = to_single_stage_lockfile(stage)\n        else:\n            if not run_cache:  # backward compatibility\n                raise RunCacheNotFoundError(stage)\n            stage.save_deps()\n            cache = self._load(stage)\n            if not cache:\n                raise RunCacheNotFoundError(stage)\n\n        cached_stage = self._create_stage(cache, wdir=stage.wdir)\n\n        if pull:\n            self.repo.cloud.pull(cached_stage.get_used_cache())\n\n        if not cached_stage.outs_cached():\n            raise RunCacheNotFoundError(stage)\n\n        logger.info(\n            \"Stage '%s' is cached - skipping run, checking out outputs\",\n            stage.addressing,\n        )\n        cached_stage.checkout()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache._transfer_StageCache._transfer.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/cache.py_StageCache._transfer_StageCache._transfer.return.ret", "embedding": null, "metadata": {"file_path": "dvc/stage/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 191, "end_line": 209, "span_ids": ["StageCache._transfer"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageCache:\n\n    @staticmethod\n    def _transfer(func, from_remote, to_remote):\n        ret = []\n\n        runs = from_remote.path_info / \"runs\"\n        if not from_remote.exists(runs):\n            return []\n\n        for src in from_remote.walk_files(runs):\n            rel = src.relative_to(from_remote.path_info)\n            dst = to_remote.path_info / rel\n            key = dst.parent\n            # check if any build cache already exists for this key\n            if to_remote.exists(key) and first(to_remote.walk_files(key)):\n                continue\n            func(src, dst)\n            ret.append((src.parent.name, src.name))\n\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/decorators.py_from_functools_import_wra_rwlocked.with_rwlock_stage_repo_tm.return.call_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/decorators.py_from_functools_import_wra_rwlocked.with_rwlock_stage_repo_tm.return.call_", "embedding": null, "metadata": {"file_path": "dvc/stage/decorators.py", "file_name": "decorators.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 36, "span_ids": ["imports", "rwlocked"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from functools import wraps\n\nfrom funcy import decorator\n\n\n@decorator\ndef rwlocked(call, read=None, write=None):\n    import sys\n\n    from dvc.dependency.repo import RepoDependency\n    from dvc.rwlock import rwlock\n\n    if read is None:\n        read = []\n\n    if write is None:\n        write = []\n\n    stage = call._args[0]  # pylint: disable=protected-access\n\n    assert stage.repo.lock.is_locked\n\n    def _chain(names):\n        return [\n            item.path_info\n            for attr in names\n            for item in getattr(stage, attr)\n            # There is no need to lock RepoDependency deps, as there is no\n            # corresponding OutputREPO, so we can't even write it.\n            if not isinstance(item, RepoDependency)\n        ]\n\n    cmd = \" \".join(sys.argv)\n\n    with rwlock(stage.repo.tmp_dir, cmd, _chain(read), _chain(write)):\n        return call()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/decorators.py_unlocked_repo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/decorators.py_unlocked_repo_", "embedding": null, "metadata": {"file_path": "dvc/stage/decorators.py", "file_name": "decorators.py", "file_type": "text/x-python", "category": "implementation", "start_line": 39, "end_line": 69, "span_ids": ["relock_repo", "unlocked_repo"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def unlocked_repo(f):\n    @wraps(f)\n    def wrapper(stage, *args, **kwargs):\n        stage.repo.state.dump()\n        stage.repo.lock.unlock()\n        stage.repo._reset()  # pylint: disable=protected-access\n        try:\n            ret = f(stage, *args, **kwargs)\n        finally:\n            stage.repo.lock.lock()\n            stage.repo.state.load()\n        return ret\n\n    return wrapper\n\n\ndef relock_repo(f):\n    @wraps(f)\n    def wrapper(stage, *args, **kwargs):\n        stage.repo.lock.lock()\n        stage.repo.state.load()\n        try:\n            ret = f(stage, *args, **kwargs)\n        finally:\n            stage.repo.state.dump()\n            stage.repo.lock.unlock()\n            stage.repo._reset()  # pylint: disable=protected-access\n        return ret\n\n    return wrapper", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py__Manages_state_database_StateVersionTooNewError.__init__.super___init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py__Manages_state_database_StateVersionTooNewError.__init__.super___init___", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 31, "span_ids": ["StateVersionTooNewError", "StateVersionTooNewError.__init__", "docstring"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages state database used for checksum caching.\"\"\"\n\nimport logging\nimport os\nimport re\nimport sqlite3\nfrom abc import ABC, abstractmethod\nfrom urllib.parse import urlencode, urlunparse\n\nfrom dvc.exceptions import DvcException\nfrom dvc.hash_info import HashInfo\nfrom dvc.utils import current_timestamp, relpath, to_chunks\nfrom dvc.utils.fs import get_inode, get_mtime_and_size, remove\n\nSQLITE_MAX_VARIABLES_NUMBER = 999\n\nlogger = logging.getLogger(__name__)\n\n\nclass StateVersionTooNewError(DvcException):\n    \"\"\"Thrown when DVC version is older than the state database version.\"\"\"\n\n    def __init__(self, dvc_version, expected, actual):\n        super().__init__(\n            \"you are using an old version '{dvc_version}' of DVC that is \"\n            \"using state file version '{expected}', which is not compatible \"\n            \"with the state file version '{actual}', that is used in this \"\n            \"repo. Please upgrade right now!\".format(\n                dvc_version=dvc_version, expected=expected, actual=actual\n            )\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_StateBase_StateNoop.dump.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_StateBase_StateNoop.dump.pass", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 34, "end_line": 93, "span_ids": ["StateBase.__enter__", "StateBase.files", "StateBase.save_link", "StateNoop.get", "StateNoop.load", "StateBase.__init__", "StateBase.dump", "StateBase.save", "StateNoop.dump", "StateBase.__exit__", "StateNoop.save", "StateBase.get", "StateBase.load", "StateBase", "StateNoop", "StateNoop.files", "StateNoop.save_link"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StateBase(ABC):\n    def __init__(self):\n        self.count = 0\n\n    @property\n    @abstractmethod\n    def files(self):\n        pass\n\n    @abstractmethod\n    def save(self, path_info, hash_info):\n        pass\n\n    @abstractmethod\n    def get(self, path_info):\n        pass\n\n    @abstractmethod\n    def save_link(self, path_info):\n        pass\n\n    @abstractmethod\n    def load(self):\n        pass\n\n    @abstractmethod\n    def dump(self):\n        pass\n\n    def __enter__(self):\n        if self.count <= 0:\n            self.load()\n        self.count += 1\n\n    def __exit__(self, typ, value, tbck):\n        self.count -= 1\n        if self.count > 0:\n            return\n        self.dump()\n\n\nclass StateNoop(StateBase):\n    @property\n    def files(self):\n        return []\n\n    def save(self, path_info, hash_info):\n        pass\n\n    def get(self, path_info):  # pylint: disable=unused-argument\n        return None\n\n    def save_link(self, path_info):\n        pass\n\n    def load(self):\n        pass\n\n    def dump(self):\n        pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/__init__.py__resolve_remote_refs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/__init__.py__resolve_remote_refs_", "embedding": null, "metadata": {"file_path": "dvc/tree/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 51, "end_line": 91, "span_ids": ["get_cloud_tree", "_resolve_remote_refs"], "tokens": 346}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _resolve_remote_refs(config, remote_conf):\n    # Support for cross referenced remotes.\n    # This will merge the settings, shadowing base ref with remote_conf.\n    # For example, having:\n    #\n    #       dvc remote add server ssh://localhost\n    #       dvc remote modify server user root\n    #       dvc remote modify server ask_password true\n    #\n    #       dvc remote add images remote://server/tmp/pictures\n    #       dvc remote modify images user alice\n    #       dvc remote modify images ask_password false\n    #       dvc remote modify images password asdf1234\n    #\n    # Results on a config dictionary like:\n    #\n    #       {\n    #           \"url\": \"ssh://localhost/tmp/pictures\",\n    #           \"user\": \"alice\",\n    #           \"password\": \"asdf1234\",\n    #           \"ask_password\": False,\n    #       }\n    parsed = urlparse(remote_conf[\"url\"])\n    if parsed.scheme != \"remote\":\n        return remote_conf\n\n    base = get_tree_config(config, name=parsed.netloc)\n    url = posixpath.join(base[\"url\"], parsed.path.lstrip(\"/\"))\n    return {**base, **remote_conf, \"url\": url}\n\n\ndef get_cloud_tree(repo, **kwargs):\n    from dvc.config import SCHEMA, ConfigError, Invalid\n\n    remote_conf = get_tree_config(repo.config, **kwargs)\n    try:\n        remote_conf = SCHEMA[\"remote\"][str](remote_conf)\n    except Invalid as exc:\n        raise ConfigError(str(exc)) from None\n    return get_tree_cls(remote_conf)(repo, remote_conf)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/_metadata.py_from_dataclasses_import_d_Metadata._list_of_outputs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/_metadata.py_from_dataclasses_import_d_Metadata._list_of_outputs", "embedding": null, "metadata": {"file_path": "dvc/tree/_metadata.py", "file_name": "_metadata.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 36, "span_ids": ["imports", "Metadata"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dataclasses import dataclass, field\nfrom typing import TYPE_CHECKING, List\n\nfrom dvc.output import BaseOutput\nfrom dvc.path_info import PathInfo\n\nif TYPE_CHECKING:\n    from dvc.repo import Repo\n\n\n@dataclass\nclass Metadata:\n    \"\"\"\n    Container for storing metadata for a given path, similar in spirit to\n    `os.stat_result`.\n    \"\"\"\n\n    # required field\n    path_info: PathInfo\n    repo: \"Repo\"\n\n    # computed fields\n    is_output: bool = field(init=False, default=False)  # is it an output?\n    # is the path part of an output?\n    part_of_output: bool = field(init=False, default=False)\n    # does the path contain outputs?\n    contains_outputs: bool = field(init=False, default=False)\n    # is the path tracked by dvc? equivalent to (is_output or part_of_output)\n    is_dvc: bool = field(init=False, default=False)\n    # does dvc has any output in that path or inside it? equiv. to bool(outs)\n    output_exists: bool = field(init=False)\n\n    # optional fields\n    isdir: bool = False  # is it a directory?\n    is_exec: bool = False  # is it an executable?\n    outs: List[BaseOutput] = field(default_factory=list)  # list of outputs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/_metadata.py_Metadata.__post_init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/_metadata.py_Metadata.__post_init___", "embedding": null, "metadata": {"file_path": "dvc/tree/_metadata.py", "file_name": "_metadata.py", "file_type": "text/x-python", "category": "implementation", "start_line": 38, "end_line": 73, "span_ids": ["Metadata.isfile", "Metadata.__str__", "Metadata.__post_init__"], "tokens": 310}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@dataclass\nclass Metadata:\n\n    def __post_init__(self):\n        self.output_exists = bool(self.outs)\n\n        if not self.output_exists:\n            return\n\n        # it can contain multiple outputs\n        if len(self.outs) > 1:\n            self.contains_outputs = True\n        else:\n            out = self.outs[0]\n            # or, the path itself could be an output\n            self.is_output = self.path_info == out.path_info\n\n            # or, a directory must have an output somewhere deep inside it\n            if not self.is_output:\n                self.contains_outputs = out.path_info.isin(self.path_info)\n\n        # or, the path could be a part of an output, i.e. inside of an output\n        self.part_of_output = not self.is_output and not self.contains_outputs\n\n        self.is_dvc = self.is_output or self.part_of_output\n        # if it contains outputs, it must be a dir\n        self.isdir = self.contains_outputs\n\n    @property\n    def isfile(self):\n        # self.isdir might require additional computation, especially if it's\n        # a dir that's inside a dvc-tracked dir\n        # since, `Metadata()` does not support being used as null (i.e. when\n        # path does not exist), `isfile` becomes `isdir`'s complement.\n        return not self.isdir\n\n    def __str__(self):\n        return f\"Metadata: {self.path_info}\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_logging_AzureTree.__init__.if_not_self__credential_.self._credential.self__az_config_get_stor": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_logging_AzureTree.__init__.if_not_self__credential_.self._credential.self__az_config_get_stor", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 52, "span_ids": ["imports", "AzureTree", "AzureTree.__init__"], "tokens": 375}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport threading\nfrom datetime import datetime, timedelta\n\nfrom funcy import cached_property, wrap_prop\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\nclass AzureTree(BaseTree):\n    scheme = Schemes.AZURE\n    PATH_CLS = CloudURLInfo\n    REQUIRES = {\n        \"azure-storage-blob\": \"azure.storage.blob\",\n        \"knack\": \"knack\",\n    }\n    PARAM_CHECKSUM = \"etag\"\n    COPY_POLL_SECONDS = 5\n    LIST_OBJECT_PAGE_SIZE = 5000\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        url = config.get(\"url\", \"azure://\")\n        self.path_info = self.PATH_CLS(url)\n\n        if not self.path_info.bucket:\n            container = self._az_config.get(\"storage\", \"container_name\", None)\n            self.path_info = self.PATH_CLS(f\"azure://{container}\")\n\n        self._conn_str = config.get(\n            \"connection_string\"\n        ) or self._az_config.get(\"storage\", \"connection_string\", None)\n\n        self._account_url = None\n        if not self._conn_str:\n            name = self._az_config.get(\"storage\", \"account\", None)\n            self._account_url = f\"https://{name}.blob.core.windows.net\"\n\n        self._credential = config.get(\"sas_token\") or self._az_config.get(\n            \"storage\", \"sas_token\", None\n        )\n        if not self._credential:\n            self._credential = self._az_config.get(\"storage\", \"key\", None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree._az_config_AzureTree._az_config.return.CLIConfig_config_dir_conf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree._az_config_AzureTree._az_config.return.CLIConfig_config_dir_conf", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 54, "end_line": 64, "span_ids": ["AzureTree._az_config"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AzureTree(BaseTree):\n\n    @cached_property\n    def _az_config(self):\n        # NOTE: ideally we would've used get_default_cli().config from\n        # azure.cli.core, but azure-cli-core has a lot of conflicts with other\n        # dependencies. So instead we are just use knack directly\n        from knack.config import CLIConfig\n\n        config_dir = os.getenv(\n            \"AZURE_CONFIG_DIR\", os.path.expanduser(os.path.join(\"~\", \".azure\"))\n        )\n        return CLIConfig(config_dir=config_dir, config_env_var_prefix=\"AZURE\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree.blob_service_AzureTree.blob_service.return.blob_service": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree.blob_service_AzureTree.blob_service.return.blob_service", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 66, "end_line": 103, "span_ids": ["AzureTree.blob_service"], "tokens": 250}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AzureTree(BaseTree):\n\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def blob_service(self):\n        # pylint: disable=no-name-in-module\n        from azure.core.exceptions import (\n            HttpResponseError,\n            ResourceNotFoundError,\n        )\n        from azure.storage.blob import BlobServiceClient\n\n        logger.debug(f\"URL {self.path_info}\")\n\n        if self._conn_str:\n            logger.debug(f\"Using connection string '{self._conn_str}'\")\n            blob_service = BlobServiceClient.from_connection_string(\n                self._conn_str, credential=self._credential\n            )\n        else:\n            logger.debug(f\"Using account url '{self._account_url}'\")\n            blob_service = BlobServiceClient(\n                self._account_url, credential=self._credential\n            )\n\n        logger.debug(f\"Container name {self.path_info.bucket}\")\n        container_client = blob_service.get_container_client(\n            self.path_info.bucket\n        )\n\n        try:  # verify that container exists\n            container_client.get_container_properties()\n        except ResourceNotFoundError:\n            container_client.create_container()\n        except HttpResponseError as exc:\n            # client may not have account-level privileges\n            if exc.status_code != 403:\n                raise\n\n        return blob_service", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree.get_etag_AzureTree._generate_download_url.return.blob_client_url_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree.get_etag_AzureTree._generate_download_url.return.blob_client_url_s", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 105, "end_line": 132, "span_ids": ["AzureTree.get_etag", "AzureTree._generate_download_url"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AzureTree(BaseTree):\n\n    def get_etag(self, path_info):\n        blob_client = self.blob_service.get_blob_client(\n            path_info.bucket, path_info.path\n        )\n        etag = blob_client.get_blob_properties().etag\n        return etag.strip('\"')\n\n    def _generate_download_url(self, path_info, expires=3600):\n        from azure.storage.blob import (  # pylint:disable=no-name-in-module\n            BlobSasPermissions,\n            generate_blob_sas,\n        )\n\n        expires_at = datetime.utcnow() + timedelta(seconds=expires)\n\n        blob_client = self.blob_service.get_blob_client(\n            path_info.bucket, path_info.path\n        )\n\n        sas_token = generate_blob_sas(\n            blob_client.account_name,\n            blob_client.container_name,\n            blob_client.blob_name,\n            account_key=blob_client.credential.account_key,\n            permission=BlobSasPermissions(read=True),\n            expiry=expires_at,\n        )\n        return blob_client.url + \"?\" + sas_token", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree.exists_AzureTree.get_file_hash.return.HashInfo_self_PARAM_CHECK": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree.exists_AzureTree.get_file_hash.return.HashInfo_self_PARAM_CHECK", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 134, "end_line": 164, "span_ids": ["AzureTree.get_file_hash", "AzureTree.exists", "AzureTree.walk_files", "AzureTree.remove", "AzureTree._list_paths"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AzureTree(BaseTree):\n\n    def exists(self, path_info, use_dvcignore=True):\n        paths = self._list_paths(path_info.bucket, path_info.path)\n        return any(path_info.path == path for path in paths)\n\n    def _list_paths(self, bucket, prefix):\n        container_client = self.blob_service.get_container_client(bucket)\n        for blob in container_client.list_blobs(name_starts_with=prefix):\n            yield blob.name\n\n    def walk_files(self, path_info, **kwargs):\n        if not kwargs.pop(\"prefix\", False):\n            path_info = path_info / \"\"\n        for fname in self._list_paths(\n            path_info.bucket, path_info.path, **kwargs\n        ):\n            if fname.endswith(\"/\"):\n                continue\n\n            yield path_info.replace(path=fname)\n\n    def remove(self, path_info):\n        if path_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        logger.debug(f\"Removing {path_info}\")\n        self.blob_service.get_blob_client(\n            path_info.bucket, path_info.path\n        ).delete_blob()\n\n    def get_file_hash(self, path_info):\n        return HashInfo(self.PARAM_CHECKSUM, self.get_etag(path_info))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree._upload_AzureTree._upload.with_open_from_file_rb_.with_Tqdm_wrapattr_.blob_client_upload_blob_w": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree._upload_AzureTree._upload.with_open_from_file_rb_.with_Tqdm_wrapattr_.blob_client_upload_blob_w", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 166, "end_line": 178, "span_ids": ["AzureTree._upload"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AzureTree(BaseTree):\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n\n        blob_client = self.blob_service.get_blob_client(\n            to_info.bucket, to_info.path\n        )\n        total = os.path.getsize(from_file)\n        with open(from_file, \"rb\") as fobj:\n            with Tqdm.wrapattr(\n                fobj, \"read\", desc=name, total=total, disable=no_progress_bar\n            ) as wrapped:\n                blob_client.upload_blob(wrapped, overwrite=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree._download_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/azure.py_AzureTree._download_", "embedding": null, "metadata": {"file_path": "dvc/tree/azure.py", "file_name": "azure.py", "file_type": "text/x-python", "category": "implementation", "start_line": 180, "end_line": 193, "span_ids": ["AzureTree._download"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class AzureTree(BaseTree):\n\n    def _download(\n        self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs\n    ):\n        blob_client = self.blob_service.get_blob_client(\n            from_info.bucket, from_info.path\n        )\n        total = blob_client.get_blob_properties().size\n        stream = blob_client.download_blob()\n        with open(to_file, \"wb\") as fobj:\n            with Tqdm.wrapattr(\n                fobj, \"write\", desc=name, total=total, disable=no_progress_bar\n            ) as wrapped:\n                stream.readinto(wrapped)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree_BaseTree.get_missing_deps.return.missing": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree_BaseTree.get_missing_deps.return.missing", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 108, "span_ids": ["BaseTree.__init__", "BaseTree.get_missing_deps", "BaseTree.hash_jobs", "BaseTree.jobs", "BaseTree"], "tokens": 407}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n    scheme = \"base\"\n    REQUIRES: ClassVar[Dict[str, str]] = {}\n    PATH_CLS = URLInfo  # type: Any\n    JOBS = 4 * cpu_count()\n\n    CHECKSUM_DIR_SUFFIX = \".dir\"\n    HASH_JOBS = max(1, min(4, cpu_count() // 2))\n    DEFAULT_VERIFY = False\n    LIST_OBJECT_PAGE_SIZE = 1000\n    TRAVERSE_WEIGHT_MULTIPLIER = 5\n    TRAVERSE_PREFIX_LEN = 3\n    TRAVERSE_THRESHOLD_SIZE = 500000\n    CAN_TRAVERSE = True\n\n    CACHE_MODE: Optional[int] = None\n    SHARED_MODE_MAP = {None: (None, None), \"group\": (None, None)}\n    PARAM_CHECKSUM: ClassVar[Optional[str]] = None\n\n    state = StateNoop()\n\n    def __init__(self, repo, config):\n        self.repo = repo\n        self.config = config\n\n        self._check_requires()\n\n        shared = config.get(\"shared\")\n        self._file_mode, self._dir_mode = self.SHARED_MODE_MAP[shared]\n\n        self.verify = config.get(\"verify\", self.DEFAULT_VERIFY)\n        self.path_info = None\n\n    @cached_property\n    def jobs(self):\n        return (\n            self.config.get(\"jobs\")\n            or (self.repo and self.repo.config[\"core\"].get(\"jobs\"))\n            or self.JOBS\n        )\n\n    @cached_property\n    def hash_jobs(self):\n        return (\n            self.config.get(\"checksum_jobs\")\n            or (self.repo and self.repo.config[\"core\"].get(\"checksum_jobs\"))\n            or self.HASH_JOBS\n        )\n\n    @classmethod\n    def get_missing_deps(cls):\n        import importlib\n\n        missing = []\n        for package, module in cls.REQUIRES.items():\n            try:\n                importlib.import_module(module)\n            except ImportError:\n                missing.append(package)\n\n        return missing", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._check_requires_BaseTree._check_requires.raise_RemoteMissingDepsEr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._check_requires_BaseTree._check_requires.raise_RemoteMissingDepsEr", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 110, "end_line": 147, "span_ids": ["BaseTree._check_requires"], "tokens": 282}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    def _check_requires(self):\n        from ..scheme import Schemes\n        from ..utils import format_link\n        from ..utils.pkg import PKG\n\n        missing = self.get_missing_deps()\n        if not missing:\n            return\n\n        url = self.config.get(\"url\", f\"{self.scheme}://\")\n\n        scheme = self.scheme\n        if scheme == Schemes.WEBDAVS:\n            scheme = Schemes.WEBDAV\n\n        by_pkg = {\n            \"pip\": f\"pip install 'dvc[{scheme}]'\",\n            \"conda\": f\"conda install -c conda-forge dvc-{scheme}\",\n        }\n\n        cmd = by_pkg.get(PKG)\n        if cmd:\n            link = format_link(\"https://dvc.org/doc/install\")\n            hint = (\n                f\"To install dvc with those dependencies, run:\\n\"\n                \"\\n\"\n                f\"\\t{cmd}\\n\"\n                \"\\n\"\n                f\"See {link} for more info.\"\n            )\n        else:\n            link = format_link(\"https://github.com/iterative/dvc/issues\")\n            hint = f\"Please report this bug to {link}. Thank you!\"\n\n        raise RemoteMissingDepsError(\n            f\"URL '{url}' is supported but requires these missing \"\n            f\"dependencies: {missing}. {hint}\"\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.supported_BaseTree.is_dir_hash.return.hash__endswith_cls_CHECKS": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.supported_BaseTree.is_dir_hash.return.hash__endswith_cls_CHECKS", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 149, "end_line": 268, "span_ids": ["BaseTree.is_dir_hash", "BaseTree.supported", "BaseTree.protect", "BaseTree.isdir", "BaseTree.iscopy", "BaseTree.walk_files", "BaseTree.symlink", "BaseTree.set_exec", "BaseTree.reflink", "BaseTree.is_protected", "BaseTree.is_empty", "BaseTree.hardlink", "BaseTree.isfile", "BaseTree.dir_mode", "BaseTree.file_mode", "BaseTree.open", "BaseTree.copy_fobj", "BaseTree.cache", "BaseTree.makedirs", "BaseTree.remove", "BaseTree.unprotect", "BaseTree.isexec", "BaseTree.copy", "BaseTree.exists", "BaseTree.move"], "tokens": 791}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    @classmethod\n    def supported(cls, config):\n        if isinstance(config, (str, bytes)):\n            url = config\n        else:\n            url = config[\"url\"]\n\n        # NOTE: silently skipping remote, calling code should handle that\n        parsed = urlparse(url)\n        return parsed.scheme == cls.scheme\n\n    @property\n    def file_mode(self):\n        return self._file_mode\n\n    @property\n    def dir_mode(self):\n        return self._dir_mode\n\n    @property\n    def cache(self):\n        return getattr(self.repo.cache, self.scheme)\n\n    def open(self, path_info, mode: str = \"r\", encoding: str = None):\n        if hasattr(self, \"_generate_download_url\"):\n            # pylint:disable=no-member\n            func = self._generate_download_url  # type: ignore[attr-defined]\n            get_url = partial(func, path_info)\n            return open_url(get_url, mode=mode, encoding=encoding)\n\n        raise RemoteActionNotImplemented(\"open\", self.scheme)\n\n    def exists(self, path_info, use_dvcignore=True) -> bool:\n        raise NotImplementedError\n\n    # pylint: disable=unused-argument\n\n    def isdir(self, path_info):\n        \"\"\"Optional: Overwrite only if the remote has a way to distinguish\n        between a directory and a file.\n        \"\"\"\n        return False\n\n    def isfile(self, path_info):\n        \"\"\"Optional: Overwrite only if the remote has a way to distinguish\n        between a directory and a file.\n        \"\"\"\n        return True\n\n    def set_exec(self, path_info):\n        raise RemoteActionNotImplemented(\"set_exec\", self.scheme)\n\n    def isexec(self, path_info):\n        \"\"\"Optional: Overwrite only if the remote has a way to distinguish\n        between executable and non-executable file.\n        \"\"\"\n        return False\n\n    def iscopy(self, path_info):\n        \"\"\"Check if this file is an independent copy.\"\"\"\n        return False  # We can't be sure by default\n\n    def walk_files(self, path_info, **kwargs):\n        \"\"\"Return a generator with `PathInfo`s to all the files.\n\n        Optional kwargs:\n            prefix (bool): If true `path_info` will be treated as a prefix\n                rather than directory path.\n        \"\"\"\n        raise NotImplementedError\n\n    def is_empty(self, path_info):\n        return False\n\n    def remove(self, path_info):\n        raise RemoteActionNotImplemented(\"remove\", self.scheme)\n\n    def makedirs(self, path_info):\n        \"\"\"Optional: Implement only if the remote needs to create\n        directories before copying/linking/moving data\n        \"\"\"\n\n    def move(self, from_info, to_info, mode=None):\n        assert mode is None\n        self.copy(from_info, to_info)\n        self.remove(from_info)\n\n    def copy(self, from_info, to_info):\n        raise RemoteActionNotImplemented(\"copy\", self.scheme)\n\n    def copy_fobj(self, fobj, to_info):\n        raise RemoteActionNotImplemented(\"copy_fobj\", self.scheme)\n\n    def symlink(self, from_info, to_info):\n        raise RemoteActionNotImplemented(\"symlink\", self.scheme)\n\n    def hardlink(self, from_info, to_info):\n        raise RemoteActionNotImplemented(\"hardlink\", self.scheme)\n\n    def reflink(self, from_info, to_info):\n        raise RemoteActionNotImplemented(\"reflink\", self.scheme)\n\n    @staticmethod\n    def protect(path_info):\n        pass\n\n    def is_protected(self, path_info):\n        return False\n\n    # pylint: enable=unused-argument\n\n    @staticmethod\n    def unprotect(path_info):\n        pass\n\n    @classmethod\n    def is_dir_hash(cls, hash_):\n        if not hash_:\n            return False\n        return hash_.endswith(cls.CHECKSUM_DIR_SUFFIX)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.get_hash_BaseTree.get_hash.return.hash_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.get_hash_BaseTree.get_hash.return.hash_info", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 248, "end_line": 286, "span_ids": ["BaseTree.get_hash"], "tokens": 270}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    @use_state\n    def get_hash(self, path_info, **kwargs):\n        assert path_info and (\n            isinstance(path_info, str) or path_info.scheme == self.scheme\n        )\n\n        if not self.exists(path_info):\n            return None\n\n        # pylint: disable=assignment-from-none\n        hash_info = self.state.get(path_info)\n\n        # If we have dir hash in state db, but dir cache file is lost,\n        # then we need to recollect the dir via .get_dir_hash() call below,\n        # see https://github.com/iterative/dvc/issues/2219 for context\n        if (\n            hash_info\n            and hash_info.isdir\n            and not self.cache.tree.exists(\n                self.cache.tree.hash_to_path_info(hash_info.value)\n            )\n        ):\n            hash_info = None\n\n        if hash_info:\n            assert hash_info.name == self.PARAM_CHECKSUM\n            if hash_info.isdir:\n                self.cache.set_dir_info(hash_info)\n            return hash_info\n\n        if self.isdir(path_info):\n            hash_info = self.get_dir_hash(path_info, **kwargs)\n        else:\n            hash_info = self.get_file_hash(path_info)\n\n        if hash_info and self.exists(path_info):\n            self.state.save(path_info, hash_info)\n\n        return hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.get_file_hash_BaseTree._calculate_hashes.with_Tqdm_.with_ThreadPoolExecutor_m.return.dict_zip_file_infos_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.get_file_hash_BaseTree._calculate_hashes.with_Tqdm_.with_ThreadPoolExecutor_m.return.dict_zip_file_infos_hash", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 288, "end_line": 304, "span_ids": ["BaseTree.get_file_hash", "BaseTree.hash_to_path_info", "BaseTree._calculate_hashes"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    def get_file_hash(self, path_info):\n        raise NotImplementedError\n\n    def hash_to_path_info(self, hash_):\n        return self.path_info / hash_[0:2] / hash_[2:]\n\n    def _calculate_hashes(self, file_infos):\n        file_infos = list(file_infos)\n        with Tqdm(\n            total=len(file_infos),\n            unit=\"md5\",\n            desc=\"Computing file/dir hashes (only done once)\",\n        ) as pbar:\n            worker = pbar.wrap_fn(self.get_file_hash)\n            with ThreadPoolExecutor(max_workers=self.hash_jobs) as executor:\n                hash_infos = executor.map(worker, file_infos)\n                return dict(zip(file_infos, hash_infos))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.get_dir_hash_BaseTree.upload.self__upload_noqa_py": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.get_dir_hash_BaseTree.upload.self__upload_noqa_py", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 336, "end_line": 370, "span_ids": ["BaseTree.get_dir_hash", "BaseTree.upload"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    @use_state\n    def get_dir_hash(self, path_info, **kwargs):\n        dir_info = self._collect_dir(path_info, **kwargs)\n        hash_info = self.repo.cache.local.save_dir_info(dir_info)\n        hash_info.size = dir_info.size\n        return hash_info\n\n    def upload(\n        self,\n        from_info,\n        to_info,\n        name=None,\n        no_progress_bar=False,\n        file_mode=None,\n    ):\n        if not hasattr(self, \"_upload\"):\n            raise RemoteActionNotImplemented(\"upload\", self.scheme)\n\n        if to_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        if from_info.scheme != \"local\":\n            raise NotImplementedError\n\n        logger.debug(\"Uploading '%s' to '%s'\", from_info, to_info)\n\n        name = name or from_info.name\n\n        self._upload(  # noqa, pylint: disable=no-member\n            from_info.fspath,\n            to_info,\n            name=name,\n            no_progress_bar=no_progress_bar,\n            file_mode=file_mode,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.download_BaseTree.download.return.self__download_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree.download_BaseTree.download.return.self__download_file_", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 394, "end_line": 429, "span_ids": ["BaseTree.download"], "tokens": 189}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    def download(\n        self,\n        from_info,\n        to_info,\n        name=None,\n        no_progress_bar=False,\n        file_mode=None,\n        dir_mode=None,\n        jobs=None,\n    ):\n        if not hasattr(self, \"_download\"):\n            raise RemoteActionNotImplemented(\"download\", self.scheme)\n\n        if from_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        if to_info.scheme == self.scheme != \"local\":\n            self.copy(from_info, to_info)\n            return 0\n\n        if to_info.scheme != \"local\":\n            raise NotImplementedError\n\n        if self.isdir(from_info):\n            return self._download_dir(\n                from_info,\n                to_info,\n                name,\n                no_progress_bar,\n                file_mode,\n                dir_mode,\n                jobs,\n            )\n        return self._download_file(\n            from_info, to_info, name, no_progress_bar, file_mode, dir_mode\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._download_dir_BaseTree._download_dir.with_Tqdm_.with_ThreadPoolExecutor_m.for_future_in_as_complete.if_exc_.raise_exc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._download_dir_BaseTree._download_dir.with_Tqdm_.with_ThreadPoolExecutor_m.for_future_in_as_complete.if_exc_.raise_exc", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 431, "end_line": 481, "span_ids": ["BaseTree._download_dir"], "tokens": 348}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    def _download_dir(\n        self,\n        from_info,\n        to_info,\n        name,\n        no_progress_bar,\n        file_mode,\n        dir_mode,\n        jobs,\n    ):\n        from_infos = list(self.walk_files(from_info))\n        to_infos = (\n            to_info / info.relative_to(from_info) for info in from_infos\n        )\n\n        with Tqdm(\n            total=len(from_infos),\n            desc=\"Downloading directory\",\n            unit=\"Files\",\n            disable=no_progress_bar,\n        ) as pbar:\n            download_files = pbar.wrap_fn(\n                partial(\n                    self._download_file,\n                    name=name,\n                    no_progress_bar=True,\n                    file_mode=file_mode,\n                    dir_mode=dir_mode,\n                )\n            )\n            max_workers = jobs or self.jobs\n            with ThreadPoolExecutor(max_workers=max_workers) as executor:\n                futures = [\n                    executor.submit(download_files, from_info, to_info)\n                    for from_info, to_info in zip(from_infos, to_infos)\n                ]\n\n                # NOTE: unlike pulling/fetching cache, where we need to\n                # download everything we can, not raising an error here might\n                # turn very ugly, as the user might think that he has\n                # downloaded a complete directory, while having a partial one,\n                # which might cause unexpected results in his pipeline.\n                for future in as_completed(futures):\n                    # NOTE: executor won't let us raise until all futures that\n                    # it has are finished, so we need to cancel them ourselves\n                    # before re-raising.\n                    exc = future.exception()\n                    if exc:\n                        for entry in futures:\n                            entry.cancel()\n                        raise exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_logging_DvcTree._find_outs.return.outs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_logging_DvcTree._find_outs.return.outs", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 51, "span_ids": ["imports", "DvcTree.__init__", "DvcTree", "DvcTree._find_outs"], "tokens": 323}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport typing\n\nfrom dvc.exceptions import OutputNotFoundError\nfrom dvc.path_info import PathInfo\nfrom dvc.utils import relpath\n\nfrom ._metadata import Metadata\nfrom .base import BaseTree, RemoteActionNotImplemented\n\nif typing.TYPE_CHECKING:\n    from dvc.output.base import BaseOutput\n\n\nlogger = logging.getLogger(__name__)\n\n\nclass DvcTree(BaseTree):  # pylint:disable=abstract-method\n    \"\"\"DVC repo tree.\n\n    Args:\n        repo: DVC repo.\n        fetch: if True, uncached DVC outs will be fetched on `open()`.\n        stream: if True, uncached DVC outs will be streamed directly from\n            remote on `open()`.\n\n    `stream` takes precedence over `fetch`. If `stream` is enabled and\n    a remote does not support streaming, uncached DVC outs will be fetched\n    as a fallback.\n    \"\"\"\n\n    scheme = \"local\"\n    PARAM_CHECKSUM = \"md5\"\n\n    def __init__(self, repo, fetch=False, stream=False):\n        super().__init__(repo, {\"url\": repo.root_dir})\n        self.fetch = fetch\n        self.stream = stream\n\n    def _find_outs(self, path, *args, **kwargs):\n        outs = self.repo.find_outs_by_path(path, *args, **kwargs)\n\n        def _is_cached(out):\n            return out.use_cache\n\n        outs = list(filter(_is_cached, outs))\n        if not outs:\n            raise OutputNotFoundError(path, self.repo)\n\n        return outs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree._get_granular_hash_DvcTree._get_granular_hash.raise_FileNotFoundError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree._get_granular_hash_DvcTree._get_granular_hash.raise_FileNotFoundError", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 53, "end_line": 66, "span_ids": ["DvcTree._get_granular_hash"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcTree(BaseTree):\n\n    def _get_granular_hash(\n        self, path_info: PathInfo, out: \"BaseOutput\", remote=None\n    ):\n        assert isinstance(path_info, PathInfo)\n        if not self.fetch and not self.stream:\n            raise FileNotFoundError\n\n        # NOTE: use string paths here for performance reasons\n        key = tuple(relpath(path_info, out.path_info).split(os.sep))\n        out.get_dir_cache(remote=remote)\n        file_hash = out.hash_info.dir_info.trie.get(key)\n        if file_hash:\n            return file_hash\n        raise FileNotFoundError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.open_DvcTree.open.return.open_cache_path_mode_mod": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.open_DvcTree.open.return.open_cache_path_mode_mod", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 72, "end_line": 111, "span_ids": ["DvcTree.open"], "tokens": 331}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcTree(BaseTree):\n\n    def open(\n        self, path: PathInfo, mode=\"r\", encoding=\"utf-8\", remote=None\n    ):  # pylint: disable=arguments-differ\n        try:\n            outs = self._find_outs(path, strict=False)\n        except OutputNotFoundError as exc:\n            raise FileNotFoundError from exc\n\n        if len(outs) != 1 or (\n            outs[0].is_dir_checksum and path == outs[0].path_info\n        ):\n            raise IsADirectoryError\n\n        out = outs[0]\n        if out.changed_cache(filter_info=path):\n            if not self.fetch and not self.stream:\n                raise FileNotFoundError\n\n            remote_obj = self.repo.cloud.get_remote(remote)\n            if self.stream:\n                if out.is_dir_checksum:\n                    checksum = self._get_granular_hash(path, out).value\n                else:\n                    checksum = out.hash_info.value\n                try:\n                    remote_info = remote_obj.tree.hash_to_path_info(checksum)\n                    return remote_obj.tree.open(\n                        remote_info, mode=mode, encoding=encoding\n                    )\n                except RemoteActionNotImplemented:\n                    pass\n            cache_info = out.get_used_cache(filter_info=path, remote=remote)\n            self.repo.cloud.pull(cache_info, remote=remote)\n\n        if out.is_dir_checksum:\n            checksum = self._get_granular_hash(path, out).value\n            cache_path = out.cache.tree.hash_to_path_info(checksum).url\n        else:\n            cache_path = out.cache_path\n        return open(cache_path, mode=mode, encoding=encoding)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree._walk_DvcTree._walk.for_dname_in_dirs_.yield_from_self__walk_roo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree._walk_DvcTree._walk.for_dname_in_dirs_.yield_from_self__walk_roo", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 176, "end_line": 201, "span_ids": ["DvcTree._walk"], "tokens": 183}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcTree(BaseTree):\n\n    def _walk(self, root, trie, topdown=True, **kwargs):\n        dirs = set()\n        files = []\n\n        out = trie.get(root.parts)\n        if out and out.is_dir_checksum:\n            self._add_dir(root, trie, out, **kwargs)\n\n        root_len = len(root.parts)\n        for key, out in trie.iteritems(prefix=root.parts):  # noqa: B301\n            if key == root.parts:\n                continue\n\n            name = key[root_len]\n            if len(key) > root_len + 1 or (out and out.is_dir_checksum):\n                dirs.add(name)\n                continue\n\n            files.append(name)\n\n        assert topdown\n        dirs = list(dirs)\n        yield root.fspath, dirs, files\n\n        for dname in dirs:\n            yield from self._walk(root / dname, trie)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.walk_DvcTree.walk.yield_from_self__walk_roo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.walk_DvcTree.walk.yield_from_self__walk_roo", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 203, "end_line": 227, "span_ids": ["DvcTree.walk"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcTree(BaseTree):\n\n    def walk(self, top, topdown=True, onerror=None, **kwargs):\n        from pygtrie import Trie\n\n        assert topdown\n        root = PathInfo(os.path.abspath(top))\n        try:\n            meta = self.metadata(root)\n        except FileNotFoundError:\n            if onerror is not None:\n                onerror(FileNotFoundError(top))\n            return\n\n        if not meta.isdir:\n            if onerror is not None:\n                onerror(NotADirectoryError(top))\n            return\n\n        trie = Trie()\n        for out in meta.outs:\n            trie[out.path_info.parts] = out\n\n            if out.is_dir_checksum and root.isin_or_eq(out.path_info):\n                self._add_dir(top, trie, out, **kwargs)\n\n        yield from self._walk(root, trie, topdown=topdown, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.walk_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.walk_files_", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 222, "end_line": 273, "span_ids": ["DvcTree.metadata", "DvcTree.isdvc", "DvcTree.isexec", "DvcTree.walk_files", "DvcTree.get_dir_hash", "DvcTree.get_file_hash"], "tokens": 412}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcTree(BaseTree):\n\n    def walk_files(self, path_info, **kwargs):\n        for root, _, files in self.walk(path_info):\n            for fname in files:\n                # NOTE: os.path.join is ~5.5 times slower\n                yield PathInfo(f\"{root}{os.sep}{fname}\")\n\n    def isdvc(self, path, recursive=False, strict=True):\n        try:\n            meta = self.metadata(path)\n        except FileNotFoundError:\n            return False\n\n        recurse = recursive or not strict\n        return meta.output_exists if recurse else meta.is_output\n\n    def isexec(self, path_info):  # pylint: disable=unused-argument\n        return False\n\n    def get_dir_hash(self, path_info, **kwargs):\n        try:\n            outs = self._find_outs(path_info, strict=True)\n            if len(outs) == 1 and outs[0].is_dir_checksum:\n                out = outs[0]\n                # other code expects us to fetch the dir at this point\n                self._fetch_dir(out, **kwargs)\n                return out.hash_info\n        except OutputNotFoundError:\n            pass\n\n        return super().get_dir_hash(path_info, **kwargs)\n\n    def get_file_hash(self, path_info):\n        outs = self._find_outs(path_info, strict=False)\n        if len(outs) != 1:\n            raise OutputNotFoundError\n        out = outs[0]\n        if out.is_dir_checksum:\n            return self._get_granular_hash(path_info, out)\n        return out.hash_info\n\n    def metadata(self, path_info):\n        path_info = PathInfo(os.path.abspath(path_info))\n\n        try:\n            outs = self._find_outs(path_info, strict=False, recursive=True)\n        except OutputNotFoundError as exc:\n            raise FileNotFoundError from exc\n\n        meta = Metadata(path_info=path_info, outs=outs, repo=self.repo)\n        meta.isdir = meta.isdir or self.check_isdir(meta.path_info, meta.outs)\n        return meta", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_io_FOLDER_MIME_TYPE._application_vnd_google_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_io_FOLDER_MIME_TYPE._application_vnd_google_a", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["imports"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\nimport logging\nimport os\nimport posixpath\nimport re\nimport threading\nfrom collections import defaultdict\nfrom contextlib import contextmanager\nfrom urllib.parse import urlparse\n\nfrom funcy import cached_property, retry, wrap_prop, wrap_with\nfrom funcy.py3 import cat\n\nfrom dvc.exceptions import DvcException, FileMissingError\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\nfrom dvc.utils import format_link, tmp_fname\nfrom dvc.utils.stream import IterStream\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\nFOLDER_MIME_TYPE = \"application/vnd.google-apps.folder\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveAuthError_GDriveAuthError.__init__.super___init___message_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveAuthError_GDriveAuthError.__init__.super___init___message_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 27, "end_line": 40, "span_ids": ["GDriveAuthError.__init__", "GDriveAuthError"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveAuthError(DvcException):\n    def __init__(self, cred_location):\n\n        if cred_location:\n            message = (\n                \"GDrive remote auth failed with credentials in '{}'.\\n\"\n                \"Backup first, remove or fix them, and run DVC again.\\n\"\n                \"It should do auth again and refresh the credentials.\\n\\n\"\n                \"Details:\".format(cred_location)\n            )\n        else:\n            message = \"Failed to authenticate GDrive remote\"\n\n        super().__init__(message)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py__gdrive_retry__gdrive_retry.return.retry_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py__gdrive_retry__gdrive_retry.return.retry_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 43, "end_line": 70, "span_ids": ["_gdrive_retry"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _gdrive_retry(func):\n    def should_retry(exc):\n        from pydrive2.files import ApiRequestError\n\n        if not isinstance(exc, ApiRequestError):\n            return False\n\n        error_code = exc.error.get(\"code\", 0)\n        result = False\n        if 500 <= error_code < 600:\n            result = True\n\n        if error_code == 403:\n            result = exc.GetField(\"reason\") in [\n                \"userRateLimitExceeded\",\n                \"rateLimitExceeded\",\n            ]\n        if result:\n            logger.debug(f\"Retrying GDrive API call, error: {exc}.\")\n\n        return result\n\n    # 16 tries, start at 0.5s, multiply by golden ratio, cap at 20s\n    return retry(\n        16,\n        timeout=lambda a: min(0.5 * 1.618 ** a, 20),\n        filter_errors=should_retry,\n    )(func)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveURLInfo_GDriveURLInfo.__init__.self._spath.re_sub_2_self": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveURLInfo_GDriveURLInfo.__init__.self._spath.re_sub_2_self", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 73, "end_line": 85, "span_ids": ["GDriveURLInfo", "GDriveURLInfo.__init__"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveURLInfo(CloudURLInfo):\n    def __init__(self, url):\n        super().__init__(url)\n\n        # GDrive URL host part is case sensitive,\n        # we are restoring it here.\n        p = urlparse(url)\n        self.host = p.netloc\n        assert self.netloc == self.host\n\n        # Normalize path. Important since we have a cache (path to ID)\n        # and don't want to deal with different variations of path in it.\n        self._spath = re.sub(\"/{2,}\", \"/\", self._spath.rstrip(\"/\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree_GDriveTree.__init__.self._gdrive_user_credentials_path._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree_GDriveTree.__init__.self._gdrive_user_credentials_path._", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 88, "end_line": 140, "span_ids": ["GDriveTree", "GDriveTree.__init__"], "tokens": 492}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n    scheme = Schemes.GDRIVE\n    PATH_CLS = GDriveURLInfo\n    REQUIRES = {\"pydrive2\": \"pydrive2\"}\n    DEFAULT_VERIFY = True\n    # Always prefer traverse for GDrive since API usage quotas are a concern.\n    TRAVERSE_WEIGHT_MULTIPLIER = 1\n    TRAVERSE_PREFIX_LEN = 2\n\n    GDRIVE_CREDENTIALS_DATA = \"GDRIVE_CREDENTIALS_DATA\"\n    DEFAULT_USER_CREDENTIALS_FILE = \"gdrive-user-credentials.json\"\n\n    DEFAULT_GDRIVE_CLIENT_ID = \"710796635688-iivsgbgsb6uv1fap6635dhvuei09o66c.apps.googleusercontent.com\"  # noqa: E501\n    DEFAULT_GDRIVE_CLIENT_SECRET = \"a1Fz59uTpVNeG_VGuSKDLJXv\"\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        self.path_info = self.PATH_CLS(config[\"url\"])\n\n        if not self.path_info.bucket:\n            raise DvcException(\n                \"Empty GDrive URL '{}'. Learn more at {}\".format(\n                    config[\"url\"],\n                    format_link(\"https://man.dvc.org/remote/add\"),\n                )\n            )\n\n        self._bucket = self.path_info.bucket\n        self._trash_only = config.get(\"gdrive_trash_only\")\n        self._use_service_account = config.get(\"gdrive_use_service_account\")\n        self._service_account_email = config.get(\n            \"gdrive_service_account_email\"\n        )\n        self._service_account_user_email = config.get(\n            \"gdrive_service_account_user_email\"\n        )\n        self._service_account_p12_file_path = config.get(\n            \"gdrive_service_account_p12_file_path\"\n        )\n        self._client_id = config.get(\"gdrive_client_id\")\n        self._client_secret = config.get(\"gdrive_client_secret\")\n        self._validate_config()\n        self._gdrive_user_credentials_path = (\n            tmp_fname(os.path.join(self.repo.tmp_dir, \"\"))\n            if os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA)\n            else config.get(\n                \"gdrive_user_credentials_file\",\n                os.path.join(\n                    self.repo.tmp_dir, self.DEFAULT_USER_CREDENTIALS_FILE,\n                ),\n            )\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._validate_config_GDriveTree._validate_config.if_not_self__use_service_.if_bool_self__client_id_.raise_DvcException_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._validate_config_GDriveTree._validate_config.if_not_self__use_service_.if_bool_self__client_id_.raise_DvcException_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 142, "end_line": 166, "span_ids": ["GDriveTree._validate_config"], "tokens": 229}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _validate_config(self):\n        # Validate Service Account configuration\n        if self._use_service_account and (\n            not self._service_account_email\n            or not self._service_account_p12_file_path\n        ):\n            raise DvcException(\n                \"To use service account, set `gdrive_service_account_email`,\\n\"\n                \"`gdrive_service_account_p12_file_path`, and optionally \"\n                \"`gdrive_service_account_user_email`\\nin DVC config. \"\n                \"Learn more at {}\".format(\n                    format_link(\"https://man.dvc.org/remote/modify\")\n                )\n            )\n\n        # Validate OAuth 2.0 Client ID configuration\n        if not self._use_service_account:\n            if bool(self._client_id) != bool(self._client_secret):\n                raise DvcException(\n                    \"Please specify GDrive's client ID and secret in \"\n                    \"DVC config or omit both to use the defaults.\\n\"\n                    \"Learn more at {}\".format(\n                        format_link(\"https://man.dvc.org/remote/modify\")\n                    )\n                )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.credentials_location_GDriveTree.credentials_location.return.None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.credentials_location_GDriveTree.credentials_location.return.None", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 168, "end_line": 179, "span_ids": ["GDriveTree.credentials_location"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @cached_property\n    def credentials_location(self):\n        \"\"\"\n        Helper to determine where will GDrive remote read credentials from.\n        Useful for tests, exception messages, etc. Returns either env variable\n        name if it's set or actual path to the credentials file.\n        \"\"\"\n        if os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA):\n            return GDriveTree.GDRIVE_CREDENTIALS_DATA\n        if os.path.exists(self._gdrive_user_credentials_path):\n            return self._gdrive_user_credentials_path\n        return None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._validate_credentials_GDriveTree._validate_credentials.if_not_os_getenv_GDriveTr.if_.logger_warning_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._validate_credentials_GDriveTree._validate_credentials.if_not_os_getenv_GDriveTr.if_.logger_warning_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 181, "end_line": 205, "span_ids": ["GDriveTree._validate_credentials"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @staticmethod\n    def _validate_credentials(auth, settings):\n        \"\"\"\n        Detects discrepancy in DVC config and cached credentials file.\n        Usually happens when a second remote is added and it is using\n        the same credentials default file. Or when someones decides to change\n        DVC config client id or secret but forgets to remove the cached\n        credentials file.\n        \"\"\"\n        if not os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA):\n            if (\n                settings[\"client_config\"][\"client_id\"]\n                != auth.credentials.client_id\n                or settings[\"client_config\"][\"client_secret\"]\n                != auth.credentials.client_secret\n            ):\n                logger.warning(\n                    \"Client ID and secret configured do not match the \"\n                    \"actual ones used\\nto access the remote. Do you \"\n                    \"use multiple GDrive remotes and forgot to\\nset \"\n                    \"`gdrive_user_credentials_file` for one or more of them? \"\n                    \"Learn more at\\n{}.\\n\".format(\n                        format_link(\"https://man.dvc.org/remote/modify\")\n                    )\n                )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._drive_GDriveTree._drive.return.GoogleDrive_gauth_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._drive_GDriveTree._drive.return.GoogleDrive_gauth_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 207, "end_line": 273, "span_ids": ["GDriveTree._drive"], "tokens": 559}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @wrap_prop(threading.RLock())\n    @cached_property\n    def _drive(self):\n        from pydrive2.auth import GoogleAuth\n        from pydrive2.drive import GoogleDrive\n\n        if os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA):\n            with open(self._gdrive_user_credentials_path, \"w\") as cred_file:\n                cred_file.write(os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA))\n\n        auth_settings = {\n            \"client_config_backend\": \"settings\",\n            \"save_credentials\": True,\n            \"save_credentials_backend\": \"file\",\n            \"save_credentials_file\": self._gdrive_user_credentials_path,\n            \"get_refresh_token\": True,\n            \"oauth_scope\": [\n                \"https://www.googleapis.com/auth/drive\",\n                \"https://www.googleapis.com/auth/drive.appdata\",\n            ],\n        }\n\n        if self._use_service_account:\n            auth_settings[\"service_config\"] = {\n                \"client_service_email\": self._service_account_email,\n                \"client_user_email\": self._service_account_user_email,\n                \"client_pkcs12_file_path\": self._service_account_p12_file_path,\n            }\n        else:\n            auth_settings[\"client_config\"] = {\n                \"client_id\": self._client_id or self.DEFAULT_GDRIVE_CLIENT_ID,\n                \"client_secret\": self._client_secret\n                or self.DEFAULT_GDRIVE_CLIENT_SECRET,\n                \"auth_uri\": \"https://accounts.google.com/o/oauth2/auth\",\n                \"token_uri\": \"https://oauth2.googleapis.com/token\",\n                \"revoke_uri\": \"https://oauth2.googleapis.com/revoke\",\n                \"redirect_uri\": \"\",\n            }\n\n        GoogleAuth.DEFAULT_SETTINGS.update(auth_settings)\n\n        # Pass non existent settings path to force DEFAULT_SETTINGS loadings\n        gauth = GoogleAuth(settings_file=\"\")\n\n        try:\n            logger.debug(\n                \"GDrive remote auth with config '{}'.\".format(\n                    GoogleAuth.DEFAULT_SETTINGS\n                )\n            )\n            if self._use_service_account:\n                gauth.ServiceAuth()\n            else:\n                gauth.CommandLineAuth()\n                GDriveTree._validate_credentials(gauth, auth_settings)\n\n        # Handle AuthenticationError, RefreshError and other auth failures\n        # It's hard to come up with a narrow exception, since PyDrive throws\n        # a lot of different errors - broken credentials file, refresh token\n        # expired, flow failed, etc.\n        except Exception as exc:\n            raise GDriveAuthError(self.credentials_location) from exc\n        finally:\n            if os.getenv(GDriveTree.GDRIVE_CREDENTIALS_DATA):\n                os.remove(self._gdrive_user_credentials_path)\n\n        return GoogleDrive(gauth)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._ids_cache_GDriveTree._ids_cache.return.cache": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._ids_cache_GDriveTree._ids_cache.return.cache", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 275, "end_line": 296, "span_ids": ["GDriveTree._ids_cache"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @wrap_prop(threading.RLock())\n    @cached_property\n    def _ids_cache(self):\n        cache = {\n            \"dirs\": defaultdict(list),\n            \"ids\": {},\n            \"root_id\": self._get_item_id(\n                self.path_info,\n                use_cache=False,\n                hint=\"Confirm the directory exists and you can access it.\",\n            ),\n        }\n\n        self._cache_path_id(self.path_info.path, cache[\"root_id\"], cache)\n\n        for item in self._gdrive_list(\n            \"'{}' in parents and trashed=false\".format(cache[\"root_id\"])\n        ):\n            item_path = (self.path_info / item[\"title\"]).path\n            self._cache_path_id(item_path, item[\"id\"], cache)\n\n        return cache", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._cache_path_id_GDriveTree._list_params.return.params": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._cache_path_id_GDriveTree._list_params.return.params", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 298, "end_line": 316, "span_ids": ["GDriveTree._cache_path_id", "GDriveTree._list_params"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _cache_path_id(self, path, item_id, cache=None):\n        cache = cache or self._ids_cache\n        cache[\"dirs\"][path].append(item_id)\n        cache[\"ids\"][item_id] = path\n\n    @cached_property\n    def _list_params(self):\n        params = {\"corpora\": \"default\"}\n        if self._bucket != \"root\" and self._bucket != \"appDataFolder\":\n            drive_id = self._gdrive_shared_drive_id(self._bucket)\n            if drive_id:\n                logger.debug(\n                    \"GDrive remote '{}' is using shared drive id '{}'.\".format(\n                        self.path_info, drive_id\n                    )\n                )\n                params[\"driveId\"] = drive_id\n                params[\"corpora\"] = \"drive\"\n        return params", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_shared_drive_id_GDriveTree._gdrive_shared_drive_id.return.item_get_driveId_None_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_shared_drive_id_GDriveTree._gdrive_shared_drive_id.return.item_get_driveId_None_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 318, "end_line": 345, "span_ids": ["GDriveTree._gdrive_shared_drive_id"], "tokens": 260}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @_gdrive_retry\n    def _gdrive_shared_drive_id(self, item_id):\n        from pydrive2.files import ApiRequestError\n\n        param = {\"id\": item_id}\n        # it does not create a file on the remote\n        item = self._drive.CreateFile(param)\n        # ID of the shared drive the item resides in.\n        # Only populated for items in shared drives.\n        try:\n            item.FetchMetadata(\"driveId\")\n        except ApiRequestError as exc:\n            error_code = exc.error.get(\"code\", 0)\n            if error_code == 404:\n                raise DvcException(\n                    \"'{}' for '{}':\\n\\n\"\n                    \"1. Confirm the directory exists and you can access it.\\n\"\n                    \"2. Make sure that credentials in '{}'\\n\"\n                    \"   are correct for this remote e.g. \"\n                    \"use the `gdrive_user_credentials_file` config\\n\"\n                    \"   option if you use multiple GDrive remotes with \"\n                    \"different email accounts.\\n\\nDetails\".format(\n                        item_id, self.path_info, self.credentials_location\n                    )\n                ) from exc\n            raise\n\n        return item.get(\"driveId\", None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_upload_file_GDriveTree._gdrive_upload_file.return.item": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_upload_file_GDriveTree._gdrive_upload_file.return.item", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 347, "end_line": 371, "span_ids": ["GDriveTree._gdrive_upload_file"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @_gdrive_retry\n    def _gdrive_upload_file(\n        self,\n        parent_id,\n        title,\n        no_progress_bar=False,\n        from_file=\"\",\n        progress_name=\"\",\n    ):\n        item = self._drive.CreateFile(\n            {\"title\": title, \"parents\": [{\"id\": parent_id}]}\n        )\n\n        with open(from_file, \"rb\") as fobj:\n            total = os.path.getsize(from_file)\n            with Tqdm.wrapattr(\n                fobj,\n                \"read\",\n                desc=progress_name,\n                total=total,\n                disable=no_progress_bar,\n            ) as wrapped:\n                item.content = wrapped\n                item.Upload()\n        return item", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_download_file_GDriveTree._gdrive_download_file.with_Tqdm_.gdrive_file_GetContentFil": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_download_file_GDriveTree._gdrive_download_file.with_Tqdm_.gdrive_file_GetContentFil", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 376, "end_line": 391, "span_ids": ["GDriveTree._gdrive_download_file"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @_gdrive_retry\n    def _gdrive_download_file(\n        self, item_id, to_file, progress_desc, no_progress_bar\n    ):\n        param = {\"id\": item_id}\n        # it does not create a file on the remote\n        gdrive_file = self._drive.CreateFile(param)\n\n        with Tqdm(\n            desc=progress_desc,\n            disable=no_progress_bar,\n            bytes=True,\n            # explicit `bar_format` as `total` will be set by `update_to`\n            bar_format=Tqdm.BAR_FMT_DEFAULT,\n        ) as pbar:\n            gdrive_file.GetContentFile(to_file, callback=pbar.update_to)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.open_GDriveTree.open.yield_stream": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.open_GDriveTree.open.yield_stream", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 393, "end_line": 408, "span_ids": ["GDriveTree.open"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @contextmanager\n    @_gdrive_retry\n    def open(self, path_info, mode=\"r\", encoding=None):\n        assert mode in {\"r\", \"rt\", \"rb\"}\n\n        item_id = self._get_item_id(path_info)\n        param = {\"id\": item_id}\n        # it does not create a file on the remote\n        gdrive_file = self._drive.CreateFile(param)\n        fd = gdrive_file.GetContentIOBuffer()\n        stream = IterStream(iter(fd))\n\n        if mode != \"rb\":\n            stream = io.TextIOWrapper(stream, encoding=encoding)\n\n        yield stream", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.gdrive_delete_file_GDriveTree.gdrive_delete_file.try_.except_ApiRequestError_as.raise": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.gdrive_delete_file_GDriveTree.gdrive_delete_file.try_.except_ApiRequestError_as.raise", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 410, "end_line": 440, "span_ids": ["GDriveTree.gdrive_delete_file"], "tokens": 251}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    @_gdrive_retry\n    def gdrive_delete_file(self, item_id):\n        from pydrive2.files import ApiRequestError\n\n        param = {\"id\": item_id}\n        # it does not create a file on the remote\n        item = self._drive.CreateFile(param)\n\n        try:\n            item.Trash() if self._trash_only else item.Delete()\n        except ApiRequestError as exc:\n            http_error_code = exc.error.get(\"code\", 0)\n            if (\n                http_error_code == 403\n                and self._list_params[\"corpora\"] == \"drive\"\n                and exc.GetField(\"location\") == \"file.permissions\"\n            ):\n                raise DvcException(\n                    \"Insufficient permissions to {}. You should have {} \"\n                    \"access level for the used shared drive. More details \"\n                    \"at {}.\".format(\n                        \"move the file into Trash\"\n                        if self._trash_only\n                        else \"permanently delete the file\",\n                        \"Manager or Content Manager\"\n                        if self._trash_only\n                        else \"Manager\",\n                        \"https://support.google.com/a/answer/7337554\",\n                    )\n                ) from exc\n            raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_list_GDriveTree._create_dir.return.item_id_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._gdrive_list_GDriveTree._create_dir.return.item_id_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 442, "end_line": 473, "span_ids": ["GDriveTree._gdrive_create_dir", "GDriveTree._create_dir", "GDriveTree._gdrive_list"], "tokens": 270}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _gdrive_list(self, query):\n        param = {\"q\": query, \"maxResults\": 1000}\n        param.update(self._list_params)\n        file_list = self._drive.ListFile(param)\n\n        # Isolate and decorate fetching of remote drive items in pages.\n        get_list = _gdrive_retry(lambda: next(file_list, None))\n\n        # Fetch pages until None is received, lazily flatten the thing.\n        return cat(iter(get_list, None))\n\n    @_gdrive_retry\n    def _gdrive_create_dir(self, parent_id, title):\n        parent = {\"id\": parent_id}\n        item = self._drive.CreateFile(\n            {\"title\": title, \"parents\": [parent], \"mimeType\": FOLDER_MIME_TYPE}\n        )\n        item.Upload()\n        return item\n\n    @wrap_with(threading.RLock())\n    def _create_dir(self, parent_id, title, remote_path):\n        cached = self._ids_cache[\"dirs\"].get(remote_path)\n        if cached:\n            return cached[0]\n\n        item = self._gdrive_create_dir(parent_id, title)\n\n        if parent_id == self._ids_cache[\"root_id\"]:\n            self._cache_path_id(remote_path, item[\"id\"])\n\n        return item[\"id\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._get_remote_item_ids_GDriveTree._get_remote_item_ids.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._get_remote_item_ids_GDriveTree._get_remote_item_ids.return._", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 475, "end_line": 491, "span_ids": ["GDriveTree._get_remote_item_ids"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _get_remote_item_ids(self, parent_ids, title):\n        if not parent_ids:\n            return None\n        query = \"trashed=false and ({})\".format(\n            \" or \".join(\n                f\"'{parent_id}' in parents\" for parent_id in parent_ids\n            )\n        )\n        query += \" and title='{}'\".format(title.replace(\"'\", \"\\\\'\"))\n\n        # GDrive list API is case insensitive, we need to compare\n        # all results and pick the ones with the right title\n        return [\n            item[\"id\"]\n            for item in self._gdrive_list(query)\n            if item[\"title\"] == title\n        ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._get_cached_item_ids_GDriveTree._path_to_item_ids.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._get_cached_item_ids_GDriveTree._path_to_item_ids.return._", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 493, "end_line": 513, "span_ids": ["GDriveTree._get_cached_item_ids", "GDriveTree._path_to_item_ids"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _get_cached_item_ids(self, path, use_cache):\n        if not path:\n            return [self._bucket]\n        if use_cache:\n            return self._ids_cache[\"dirs\"].get(path, [])\n        return []\n\n    def _path_to_item_ids(self, path, create, use_cache):\n        item_ids = self._get_cached_item_ids(path, use_cache)\n        if item_ids:\n            return item_ids\n\n        parent_path, title = posixpath.split(path)\n        parent_ids = self._path_to_item_ids(parent_path, create, use_cache)\n        item_ids = self._get_remote_item_ids(parent_ids, title)\n        if item_ids:\n            return item_ids\n\n        return (\n            [self._create_dir(min(parent_ids), title, path)] if create else []\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._get_item_id_GDriveTree.exists.try_.else_.return.True": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._get_item_id_GDriveTree.exists.try_.else_.return.True", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 515, "end_line": 531, "span_ids": ["GDriveTree.exists", "GDriveTree._get_item_id"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _get_item_id(self, path_info, create=False, use_cache=True, hint=None):\n        assert path_info.bucket == self._bucket\n\n        item_ids = self._path_to_item_ids(path_info.path, create, use_cache)\n        if item_ids:\n            return min(item_ids)\n\n        assert not create\n        raise FileMissingError(path_info, hint)\n\n    def exists(self, path_info, use_dvcignore=True):\n        try:\n            self._get_item_id(path_info)\n        except FileMissingError:\n            return False\n        else:\n            return True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._list_paths_GDriveTree._list_paths.for_item_in_self__gdrive_.yield_posixpath_join_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree._list_paths_GDriveTree._list_paths.for_item_in_self__gdrive_.yield_posixpath_join_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 533, "end_line": 552, "span_ids": ["GDriveTree._list_paths"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def _list_paths(self, prefix=None):\n        if not self._ids_cache[\"ids\"]:\n            return\n\n        if prefix:\n            dir_ids = self._ids_cache[\"dirs\"].get(prefix[:2])\n            if not dir_ids:\n                return\n        else:\n            dir_ids = self._ids_cache[\"ids\"]\n        parents_query = \" or \".join(\n            f\"'{dir_id}' in parents\" for dir_id in dir_ids\n        )\n        query = f\"({parents_query}) and trashed=false\"\n\n        for item in self._gdrive_list(query):\n            parent_id = item[\"parents\"][0][\"id\"]\n            yield posixpath.join(\n                self._ids_cache[\"ids\"][parent_id], item[\"title\"]\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.walk_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gdrive.py_GDriveTree.walk_files_", "embedding": null, "metadata": {"file_path": "dvc/tree/gdrive.py", "file_name": "gdrive.py", "file_type": "text/x-python", "category": "implementation", "start_line": 551, "end_line": 581, "span_ids": ["GDriveTree.walk_files", "GDriveTree.get_file_hash", "GDriveTree._upload", "GDriveTree._download", "GDriveTree.remove"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GDriveTree(BaseTree):\n\n    def walk_files(self, path_info, **kwargs):\n        use_prefix = kwargs.pop(\"prefix\", False)\n        if path_info == self.path_info or not use_prefix:\n            prefix = None\n        else:\n            prefix = path_info.path\n        for fname in self._list_paths(prefix=prefix, **kwargs):\n            yield path_info.replace(fname)\n\n    def remove(self, path_info):\n        item_id = self._get_item_id(path_info)\n        self.gdrive_delete_file(item_id)\n\n    def get_file_hash(self, path_info):\n        raise NotImplementedError\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        dirname = to_info.parent\n        assert dirname\n        parent_id = self._get_item_id(dirname, True)\n\n        self._gdrive_upload_file(\n            parent_id, to_info.name, no_progress_bar, from_file, name\n        )\n\n    def _download(self, from_info, to_file, name=None, no_progress_bar=False):\n        item_id = self._get_item_id(from_info)\n        self._gdrive_download_file(item_id, to_file, name, no_progress_bar)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_logging_dynamic_chunk_size.return.wrapper": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_logging_dynamic_chunk_size.return.wrapper", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 45, "span_ids": ["imports", "dynamic_chunk_size"], "tokens": 306}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os.path\nimport threading\nfrom datetime import timedelta\nfrom functools import wraps\n\nfrom funcy import cached_property, wrap_prop\n\nfrom dvc.exceptions import DvcException\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\ndef dynamic_chunk_size(func):\n    @wraps(func)\n    def wrapper(*args, **kwargs):\n        import requests\n        from google.cloud.storage.blob import Blob\n\n        # `ConnectionError` may be due to too large `chunk_size`\n        # (see [#2572]) so try halving on error.\n        # Note: start with 40 * [default: 256K] = 10M.\n        # Note: must be multiple of 256K.\n        #\n        # [#2572]: https://github.com/iterative/dvc/issues/2572\n        # skipcq: PYL-W0212\n        multiplier = 40\n        while True:\n            try:\n                # skipcq: PYL-W0212\n                # pylint: disable=protected-access\n                chunk_size = Blob._CHUNK_SIZE_MULTIPLE * multiplier\n                return func(*args, chunk_size=chunk_size, **kwargs)\n            except requests.exceptions.ConnectionError:\n                multiplier //= 2\n                if not multiplier:\n                    raise\n\n    return wrapper", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py__upload_to_bucket__upload_to_bucket.with_open_from_file_mode.with_Tqdm_wrapattr_.blob_upload_from_file_wra": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py__upload_to_bucket__upload_to_bucket.with_open_from_file_mode.with_Tqdm_wrapattr_.blob_upload_from_file_wra", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 66, "span_ids": ["_upload_to_bucket"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@dynamic_chunk_size\ndef _upload_to_bucket(\n    bucket,\n    from_file,\n    to_info,\n    chunk_size=None,\n    name=None,\n    no_progress_bar=False,\n):\n    blob = bucket.blob(to_info.path, chunk_size=chunk_size)\n    with open(from_file, mode=\"rb\") as fobj:\n        with Tqdm.wrapattr(\n            fobj,\n            \"read\",\n            desc=name or to_info.path,\n            total=os.path.getsize(from_file),\n            disable=no_progress_bar,\n        ) as wrapped:\n            blob.upload_from_file(wrapped)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree_GSTree.gs.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree_GSTree.gs.return._", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 69, "end_line": 93, "span_ids": ["GSTree.gs", "GSTree", "GSTree.__init__"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GSTree(BaseTree):\n    scheme = Schemes.GS\n    PATH_CLS = CloudURLInfo\n    REQUIRES = {\"google-cloud-storage\": \"google.cloud.storage\"}\n    PARAM_CHECKSUM = \"md5\"\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        url = config.get(\"url\", \"gs:///\")\n        self.path_info = self.PATH_CLS(url)\n\n        self.projectname = config.get(\"projectname\", None)\n        self.credentialpath = config.get(\"credentialpath\")\n\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def gs(self):\n        from google.cloud.storage import Client\n\n        return (\n            Client.from_service_account_json(self.credentialpath)\n            if self.credentialpath\n            else Client(self.projectname)\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree._generate_download_url_GSTree._generate_download_url.return.signing_credentials_signe": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree._generate_download_url_GSTree._generate_download_url.return.signing_credentials_signe", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 95, "end_line": 120, "span_ids": ["GSTree._generate_download_url"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GSTree(BaseTree):\n\n    def _generate_download_url(self, path_info, expires=3600):\n        import google.auth\n        from google.auth import compute_engine\n\n        expiration = timedelta(seconds=int(expires))\n\n        bucket = self.gs.bucket(path_info.bucket)\n        blob = bucket.get_blob(path_info.path)\n        if blob is None:\n            raise FileNotFoundError\n\n        if isinstance(\n            blob.client._credentials,  # pylint: disable=protected-access\n            google.auth.credentials.Signing,\n        ):\n            # sign if we're able to sign with credentials.\n            return blob.generate_signed_url(expiration=expiration)\n\n        auth_request = google.auth.transport.requests.Request()\n        # create signing credentials with the default credentials\n        # for use with Compute Engine and other environments where\n        # Client credentials cannot sign.\n        signing_credentials = compute_engine.IDTokenCredentials(\n            auth_request, \"\"\n        )\n        return signing_credentials.signer.sign(blob)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree.exists_GSTree.copy.from_bucket_copy_blob_blo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree.exists_GSTree.copy.from_bucket_copy_blob_blo", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 122, "end_line": 183, "span_ids": ["GSTree.exists", "GSTree.isdir", "GSTree.walk_files", "GSTree._list_paths", "GSTree.remove", "GSTree.isfile", "GSTree.copy", "GSTree.makedirs"], "tokens": 462}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GSTree(BaseTree):\n\n    def exists(self, path_info, use_dvcignore=True):\n        \"\"\"Check if the blob exists. If it does not exist,\n        it could be a part of a directory path.\n\n        eg: if `data/file.txt` exists, check for `data` should return True\n        \"\"\"\n        return self.isfile(path_info) or self.isdir(path_info)\n\n    def isdir(self, path_info):\n        dir_path = path_info / \"\"\n        return bool(list(self._list_paths(dir_path, max_items=1)))\n\n    def isfile(self, path_info):\n        if path_info.path.endswith(\"/\"):\n            return False\n\n        blob = self.gs.bucket(path_info.bucket).blob(path_info.path)\n        return blob.exists()\n\n    def _list_paths(self, path_info, max_items=None):\n        for blob in self.gs.bucket(path_info.bucket).list_blobs(\n            prefix=path_info.path, max_results=max_items\n        ):\n            yield blob.name\n\n    def walk_files(self, path_info, **kwargs):\n        if not kwargs.pop(\"prefix\", False):\n            path_info = path_info / \"\"\n        for fname in self._list_paths(path_info, **kwargs):\n            # skip nested empty directories\n            if fname.endswith(\"/\"):\n                continue\n            yield path_info.replace(fname)\n\n    def remove(self, path_info):\n        if path_info.scheme != \"gs\":\n            raise NotImplementedError\n\n        logger.debug(f\"Removing gs://{path_info}\")\n        blob = self.gs.bucket(path_info.bucket).get_blob(path_info.path)\n        if not blob:\n            return\n\n        blob.delete()\n\n    def makedirs(self, path_info):\n        if not path_info.path:\n            return\n\n        self.gs.bucket(path_info.bucket).blob(\n            (path_info / \"\").path\n        ).upload_from_string(\"\")\n\n    def copy(self, from_info, to_info):\n        from_bucket = self.gs.bucket(from_info.bucket)\n        blob = from_bucket.get_blob(from_info.path)\n        if not blob:\n            msg = f\"'{from_info.path}' doesn't exist in the cloud\"\n            raise DvcException(msg)\n\n        to_bucket = self.gs.bucket(to_info.bucket)\n        from_bucket.copy_blob(blob, to_bucket, new_name=to_info.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree.get_file_hash_GSTree.get_file_hash.return.HashInfo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree.get_file_hash_GSTree.get_file_hash.return.HashInfo_", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 185, "end_line": 201, "span_ids": ["GSTree.get_file_hash"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GSTree(BaseTree):\n\n    def get_file_hash(self, path_info):\n        import base64\n        import codecs\n\n        bucket = path_info.bucket\n        path = path_info.path\n        blob = self.gs.bucket(bucket).get_blob(path)\n        if not blob:\n            return HashInfo(self.PARAM_CHECKSUM, None)\n\n        b64_md5 = blob.md5_hash\n        md5 = base64.b64decode(b64_md5)\n        return HashInfo(\n            self.PARAM_CHECKSUM,\n            codecs.getencoder(\"hex\")(md5)[0].decode(\"utf-8\"),\n            size=blob.size,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree._upload_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/gs.py_GSTree._upload_", "embedding": null, "metadata": {"file_path": "dvc/tree/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 203, "end_line": 227, "span_ids": ["GSTree._upload", "GSTree._download"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GSTree(BaseTree):\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        bucket = self.gs.bucket(to_info.bucket)\n        _upload_to_bucket(\n            bucket,\n            from_file,\n            to_info,\n            name=name,\n            no_progress_bar=no_progress_bar,\n        )\n\n    def _download(self, from_info, to_file, name=None, no_progress_bar=False):\n        bucket = self.gs.bucket(from_info.bucket)\n        blob = bucket.get_blob(from_info.path)\n        with open(to_file, mode=\"wb\") as fobj:\n            with Tqdm.wrapattr(\n                fobj,\n                \"write\",\n                desc=name or from_info.path,\n                total=blob.size,\n                disable=no_progress_bar,\n            ) as wrapped:\n                blob.download_to_file(wrapped)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_io_HDFSTree.hdfs.return.get_connection_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_io_HDFSTree.hdfs.return.get_connection_", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 63, "span_ids": ["imports", "HDFSTree.__init__", "HDFSTree", "HDFSTree.hdfs"], "tokens": 372}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\nimport logging\nimport os\nimport re\nimport subprocess\nfrom collections import deque\nfrom contextlib import closing, contextmanager\nfrom urllib.parse import urlparse\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\nfrom dvc.utils import fix_env, tmp_fname\n\nfrom .base import BaseTree, RemoteCmdError\nfrom .pool import get_connection\n\nlogger = logging.getLogger(__name__)\n\n\nclass HDFSTree(BaseTree):\n    scheme = Schemes.HDFS\n    REQUIRES = {\"pyarrow\": \"pyarrow\"}\n    REGEX = r\"^hdfs://((?P<user>.*)@)?.*$\"\n    PARAM_CHECKSUM = \"checksum\"\n    TRAVERSE_PREFIX_LEN = 2\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        self.path_info = None\n        url = config.get(\"url\")\n        if not url:\n            return\n\n        parsed = urlparse(url)\n        user = parsed.username or config.get(\"user\")\n\n        self.path_info = self.PATH_CLS.from_parts(\n            scheme=self.scheme,\n            host=parsed.hostname,\n            user=user,\n            port=parsed.port,\n            path=parsed.path,\n        )\n\n    @staticmethod\n    def hdfs(path_info):\n        import pyarrow.fs\n\n        # NOTE: HadoopFileSystem is not meant to be closed by us and doesn't\n        # have close() method or alternative, so we add a noop one to satisfy\n        # our connection pool.\n        class HDFSConnection(pyarrow.fs.HadoopFileSystem):\n            def close(self):\n                pass\n\n        return get_connection(\n            HDFSConnection,\n            path_info.host,\n            path_info.port,\n            user=path_info.user,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._download_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._download_", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 250, "end_line": 266, "span_ids": ["HDFSTree._download"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    def _download(\n        self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs\n    ):\n        with self.hdfs(from_info) as hdfs:\n            file_info = hdfs.get_file_info(from_info.path)\n            total = file_info.size\n            with open(to_file, \"wb+\") as fobj:\n                with Tqdm.wrapattr(\n                    fobj,\n                    \"write\",\n                    desc=name,\n                    total=total,\n                    disable=no_progress_bar,\n                ) as wrapped:\n                    with hdfs.open_input_stream(from_info.path) as sobj:\n                        wrapped.write(sobj.read())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_logging_ask_password.return.prompt_password_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_logging_ask_password.return.prompt_password_", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 25, "span_ids": ["imports", "ask_password"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os.path\nimport threading\n\nfrom funcy import cached_property, memoize, wrap_prop, wrap_with\n\nimport dvc.prompt as prompt\nfrom dvc.exceptions import DvcException, HTTPError\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import HTTPURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\n@wrap_with(threading.Lock())\n@memoize\ndef ask_password(host, user):\n    return prompt.password(\n        \"Enter a password for \"\n        \"host '{host}' user '{user}'\".format(host=host, user=user)\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree_HTTPTree.__init__.self.method.config_get_method_POS": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree_HTTPTree.__init__.self.method.config_get_method_POS", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 28, "end_line": 57, "span_ids": ["HTTPTree", "HTTPTree.__init__"], "tokens": 239}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):  # pylint:disable=abstract-method\n    scheme = Schemes.HTTP\n    PATH_CLS = HTTPURLInfo\n    PARAM_CHECKSUM = \"etag\"\n    CAN_TRAVERSE = False\n\n    SESSION_RETRIES = 5\n    SESSION_BACKOFF_FACTOR = 0.1\n    REQUEST_TIMEOUT = 60\n    CHUNK_SIZE = 2 ** 16\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        url = config.get(\"url\")\n        if url:\n            self.path_info = self.PATH_CLS(url)\n            user = config.get(\"user\", None)\n            if user:\n                self.path_info.user = user\n        else:\n            self.path_info = None\n\n        self.auth = config.get(\"auth\", None)\n        self.custom_auth_header = config.get(\"custom_auth_header\", None)\n        self.password = config.get(\"password\", None)\n        self.ask_password = config.get(\"ask_password\", False)\n        self.headers = {}\n        self.ssl_verify = config.get(\"ssl_verify\", True)\n        self.method = config.get(\"method\", \"POST\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._auth_method_HTTPTree._auth_method.return.None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._auth_method_HTTPTree._auth_method.return.None", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 59, "end_line": 75, "span_ids": ["HTTPTree._auth_method"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):\n\n    def _auth_method(self, path_info=None):\n        from requests.auth import HTTPBasicAuth, HTTPDigestAuth\n\n        if path_info is None:\n            path_info = self.path_info\n\n        if self.auth:\n            if self.ask_password and self.password is None:\n                host, user = path_info.host, path_info.user\n                self.password = ask_password(host, user)\n            if self.auth == \"basic\":\n                return HTTPBasicAuth(path_info.user, self.password)\n            if self.auth == \"digest\":\n                return HTTPDigestAuth(path_info.user, self.password)\n            if self.auth == \"custom\" and self.custom_auth_header:\n                self.headers.update({self.custom_auth_header: self.password})\n        return None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._session_HTTPTree._session.return.session": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._session_HTTPTree._session.return.session", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 77, "end_line": 96, "span_ids": ["HTTPTree._session"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):\n\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def _session(self):\n        import requests\n        from requests.adapters import HTTPAdapter\n        from urllib3.util.retry import Retry\n\n        session = requests.Session()\n\n        session.verify = self.ssl_verify\n\n        retries = Retry(\n            total=self.SESSION_RETRIES,\n            backoff_factor=self.SESSION_BACKOFF_FACTOR,\n        )\n\n        session.mount(\"http://\", HTTPAdapter(max_retries=retries))\n        session.mount(\"https://\", HTTPAdapter(max_retries=retries))\n\n        return session", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree.request_HTTPTree.request.try_.except_requests_exception.raise_DvcException_f_coul": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree.request_HTTPTree.request.try_.except_requests_exception.raise_DvcException_f_coul", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 98, "end_line": 128, "span_ids": ["HTTPTree.request"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):\n\n    def request(self, method, url, **kwargs):\n        import requests\n\n        kwargs.setdefault(\"allow_redirects\", True)\n        kwargs.setdefault(\"timeout\", self.REQUEST_TIMEOUT)\n\n        try:\n            res = self._session.request(\n                method,\n                url,\n                auth=self._auth_method(),\n                headers=self.headers,\n                **kwargs,\n            )\n\n            redirect_no_location = (\n                kwargs[\"allow_redirects\"]\n                and res.status_code in (301, 302)\n                and \"location\" not in res.headers\n            )\n\n            if redirect_no_location:\n                # AWS s3 doesn't like to add a location header to its redirects\n                # from https://s3.amazonaws.com/<bucket name>/* type URLs.\n                # This should be treated as an error\n                raise requests.exceptions.RequestException\n\n            return res\n\n        except requests.exceptions.RequestException:\n            raise DvcException(f\"could not perform a {method} request\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._head_HTTPTree.get_file_hash.return.HashInfo_self_PARAM_CHECK": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._head_HTTPTree.get_file_hash.return.HashInfo_self_PARAM_CHECK", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 130, "end_line": 164, "span_ids": ["HTTPTree.exists", "HTTPTree.get_file_hash", "HTTPTree._head"], "tokens": 247}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):\n\n    def _head(self, url):\n        response = self.request(\"HEAD\", url)\n        if response.ok:\n            return response\n\n        # Sometimes servers are configured to forbid HEAD requests\n        # Context: https://github.com/iterative/dvc/issues/4131\n        with self.request(\"GET\", url, stream=True) as r:\n            if r.ok:\n                return r\n\n        return response\n\n    def exists(self, path_info, use_dvcignore=True):\n        res = self._head(path_info.url)\n        if res.status_code == 404:\n            return False\n        if bool(res):\n            return True\n        raise HTTPError(res.status_code, res.reason)\n\n    def get_file_hash(self, path_info):\n        url = path_info.url\n\n        headers = self._head(url).headers\n\n        etag = headers.get(\"ETag\") or headers.get(\"Content-MD5\")\n\n        if not etag:\n            raise DvcException(\n                \"could not find an ETag or \"\n                \"Content-MD5 header for '{url}'\".format(url=url)\n            )\n\n        return HashInfo(self.PARAM_CHECKSUM, etag)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._download_HTTPTree._download.with_open_to_file_wb_.with_Tqdm_wrapattr_.for_chunk_in_response_ite.fd_wrapped_write_chunk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._download_HTTPTree._download.with_open_to_file_wb_.with_Tqdm_wrapattr_.for_chunk_in_response_ite.fd_wrapped_write_chunk_", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 161, "end_line": 177, "span_ids": ["HTTPTree._download"], "tokens": 159}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):\n\n    def _download(self, from_info, to_file, name=None, no_progress_bar=False):\n        response = self.request(\"GET\", from_info.url, stream=True)\n        if response.status_code != 200:\n            raise HTTPError(response.status_code, response.reason)\n        with open(to_file, \"wb\") as fd:\n            with Tqdm.wrapattr(\n                fd,\n                \"write\",\n                total=None\n                if no_progress_bar\n                else self._content_length(response),\n                leave=False,\n                desc=from_info.url if name is None else name,\n                disable=no_progress_bar,\n            ) as fd_wrapped:\n                for chunk in response.iter_content(chunk_size=self.CHUNK_SIZE):\n                    fd_wrapped.write(chunk)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._upload_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/http.py_HTTPTree._upload_", "embedding": null, "metadata": {"file_path": "dvc/tree/http.py", "file_name": "http.py", "file_type": "text/x-python", "category": "implementation", "start_line": 184, "end_line": 213, "span_ids": ["HTTPTree._content_length", "HTTPTree._upload"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HTTPTree(BaseTree):\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        def chunks():\n            with open(from_file, \"rb\") as fd:\n                with Tqdm.wrapattr(\n                    fd,\n                    \"read\",\n                    total=None\n                    if no_progress_bar\n                    else os.path.getsize(from_file),\n                    leave=False,\n                    desc=to_info.url if name is None else name,\n                    disable=no_progress_bar,\n                ) as fd_wrapped:\n                    while True:\n                        chunk = fd_wrapped.read(self.CHUNK_SIZE)\n                        if not chunk:\n                            break\n                        yield chunk\n\n        response = self.request(self.method, to_info.url, data=chunks())\n        if response.status_code not in (200, 201):\n            raise HTTPError(response.status_code, response.reason)\n\n    @staticmethod\n    def _content_length(response):\n        res = response.headers.get(\"Content-Length\")\n        return int(res) if res else None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/https.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/https.py__", "embedding": null, "metadata": {"file_path": "dvc/tree/https.py", "file_name": "https.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["imports", "HTTPSTree"], "tokens": 42}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.scheme import Schemes\n\nfrom .http import HTTPTree\n\n\nclass HTTPSTree(HTTPTree):  # pylint:disable=abstract-method\n    scheme = Schemes.HTTPS", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_errno_logger.logging_getLogger___name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_errno_logger.logging_getLogger___name_", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 20, "span_ids": ["imports"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport logging\nimport os\nimport stat\nfrom typing import Any, Dict\n\nfrom funcy import cached_property\nfrom shortuuid import uuid\n\nfrom dvc.exceptions import DvcException\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.scheme import Schemes\nfrom dvc.system import System\nfrom dvc.utils import file_md5, is_exec, relpath, tmp_fname\nfrom dvc.utils.fs import copy_fobj_to_file, copyfile, makedirs, move, remove\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree_LocalTree.iscopy.return.not_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree_LocalTree.iscopy.return.not_", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 23, "end_line": 96, "span_ids": ["LocalTree.dvcignore", "LocalTree.tree_root", "LocalTree.exists", "LocalTree.isfile", "LocalTree.__init__", "LocalTree.state", "LocalTree.open", "LocalTree.isdir", "LocalTree", "LocalTree.iscopy"], "tokens": 570}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n    scheme = Schemes.LOCAL\n    PATH_CLS = PathInfo\n    PARAM_CHECKSUM = \"md5\"\n    PARAM_PATH = \"path\"\n    TRAVERSE_PREFIX_LEN = 2\n\n    CACHE_MODE = 0o444\n    SHARED_MODE_MAP: Dict[Any, Any] = {\n        None: (0o644, 0o755),\n        \"group\": (0o664, 0o775),\n    }\n\n    def __init__(self, repo, config, use_dvcignore=False, dvcignore_root=None):\n        super().__init__(repo, config)\n        url = config.get(\"url\")\n        self.path_info = self.PATH_CLS(url) if url else None\n        self.use_dvcignore = use_dvcignore\n        self.dvcignore_root = dvcignore_root\n\n    @property\n    def tree_root(self):\n        return self.config.get(\"url\")\n\n    @property\n    def state(self):\n        from dvc.state import StateNoop\n\n        return self.repo.state if self.repo else StateNoop()\n\n    @cached_property\n    def dvcignore(self):\n        from dvc.ignore import DvcIgnoreFilter, DvcIgnoreFilterNoop\n\n        root = self.dvcignore_root or self.tree_root\n        cls = DvcIgnoreFilter if self.use_dvcignore else DvcIgnoreFilterNoop\n        return cls(self, root)\n\n    @staticmethod\n    def open(path_info, mode=\"r\", encoding=None):\n        return open(path_info, mode=mode, encoding=encoding)\n\n    def exists(self, path_info, use_dvcignore=True):\n        assert isinstance(path_info, str) or path_info.scheme == \"local\"\n        if self.repo:\n            ret = os.path.lexists(path_info)\n        else:\n            ret = os.path.exists(path_info)\n        if not ret:\n            return False\n        if not use_dvcignore:\n            return True\n\n        return not self.dvcignore.is_ignored_file(\n            path_info\n        ) and not self.dvcignore.is_ignored_dir(path_info)\n\n    def isfile(self, path_info):\n        if not os.path.isfile(path_info):\n            return False\n\n        return not self.dvcignore.is_ignored_file(path_info)\n\n    def isdir(\n        self, path_info, use_dvcignore=True\n    ):  # pylint: disable=arguments-differ\n        if not os.path.isdir(path_info):\n            return False\n        return not (use_dvcignore and self.dvcignore.is_ignored_dir(path_info))\n\n    def iscopy(self, path_info):\n        return not (\n            System.is_symlink(path_info) or System.is_hardlink(path_info)\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.walk_LocalTree.walk.for_root_dirs_files_in_.yield_os_path_normpath_ro": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.walk_LocalTree.walk.for_root_dirs_files_in_.yield_os_path_normpath_ro", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 102, "end_line": 126, "span_ids": ["LocalTree.walk"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    def walk(\n        self,\n        top,\n        topdown=True,\n        onerror=None,\n        use_dvcignore=True,\n        ignore_subrepos=True,\n    ):\n        \"\"\"Directory tree generator.\n\n        See `os.walk` for the docs. Differences:\n        - no support for symlinks\n        \"\"\"\n        for root, dirs, files in os.walk(\n            top, topdown=topdown, onerror=onerror\n        ):\n            if use_dvcignore:\n                dirs[:], files[:] = self.dvcignore(\n                    os.path.abspath(root),\n                    dirs,\n                    files,\n                    ignore_subrepos=ignore_subrepos,\n                )\n\n            yield os.path.normpath(root), dirs, files", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.walk_files_LocalTree.is_symlink.return.System_is_symlink_path_in": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.walk_files_LocalTree.is_symlink.return.System_is_symlink_path_in", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 124, "end_line": 203, "span_ids": ["LocalTree.copy_fobj", "LocalTree.walk_files", "LocalTree.set_exec", "LocalTree.is_symlink", "LocalTree.symlink", "LocalTree.isexec", "LocalTree.makedirs", "LocalTree.is_empty", "LocalTree.move", "LocalTree.copy", "LocalTree.stat", "LocalTree.remove"], "tokens": 549}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    def walk_files(self, path_info, **kwargs):\n        for root, _, files in self.walk(path_info):\n            for file in files:\n                # NOTE: os.path.join is ~5.5 times slower\n                yield PathInfo(f\"{root}{os.sep}{file}\")\n\n    def is_empty(self, path_info):\n        if self.isfile(path_info) and os.path.getsize(path_info) == 0:\n            return True\n\n        if self.isdir(path_info) and len(os.listdir(path_info)) == 0:\n            return True\n\n        return False\n\n    def remove(self, path_info):\n        if isinstance(path_info, PathInfo):\n            if path_info.scheme != \"local\":\n                raise NotImplementedError\n        remove(path_info)\n\n    def makedirs(self, path_info):\n        makedirs(path_info, exist_ok=True, mode=self.dir_mode)\n\n    def set_exec(self, path_info):\n        mode = self.stat(path_info).st_mode\n        self.chmod(path_info, mode | stat.S_IEXEC)\n\n    def isexec(self, path_info):\n        mode = self.stat(path_info).st_mode\n        return is_exec(mode)\n\n    def stat(self, path):\n        if self.dvcignore.is_ignored(path):\n            raise FileNotFoundError\n\n        return os.stat(path)\n\n    def move(self, from_info, to_info, mode=None):\n        if from_info.scheme != \"local\" or to_info.scheme != \"local\":\n            raise NotImplementedError\n\n        self.makedirs(to_info.parent)\n\n        if mode is None:\n            if self.isfile(from_info):\n                mode = self.file_mode\n            else:\n                mode = self.dir_mode\n\n        move(from_info, to_info, mode=mode)\n\n    def copy(self, from_info, to_info):\n        tmp_info = to_info.parent / tmp_fname(to_info.name)\n        try:\n            System.copy(from_info, tmp_info)\n            os.chmod(tmp_info, self.file_mode)\n            os.rename(tmp_info, to_info)\n        except Exception:\n            self.remove(tmp_info)\n            raise\n\n    def copy_fobj(self, fobj, to_info):\n        self.makedirs(to_info.parent)\n        tmp_info = to_info.parent / tmp_fname(to_info.name)\n        try:\n            copy_fobj_to_file(fobj, tmp_info)\n            os.chmod(tmp_info, self.file_mode)\n            os.rename(tmp_info, to_info)\n        except Exception:\n            self.remove(tmp_info)\n            raise\n\n    @staticmethod\n    def symlink(from_info, to_info):\n        System.symlink(from_info, to_info)\n\n    @staticmethod\n    def is_symlink(path_info):\n        return System.is_symlink(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.hardlink_LocalTree.hardlink.System_hardlink_from_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.hardlink_LocalTree.hardlink.System_hardlink_from_info", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 205, "end_line": 225, "span_ids": ["LocalTree.hardlink"], "tokens": 260}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    def hardlink(self, from_info, to_info):\n        # If there are a lot of empty files (which happens a lot in datasets),\n        # and the cache type is `hardlink`, we might reach link limits and\n        # will get something like: `too many links error`\n        #\n        # This is because all those empty files will have the same hash\n        # (i.e. 68b329da9893e34099c7d8ad5cb9c940), therefore, they will be\n        # linked to the same file in the cache.\n        #\n        # From https://en.wikipedia.org/wiki/Hard_link\n        #   * ext4 limits the number of hard links on a file to 65,000\n        #   * Windows with NTFS has a limit of 1024 hard links on a file\n        #\n        # That's why we simply create an empty file rather than a link.\n        if self.getsize(from_info) == 0:\n            self.open(to_info, \"w\").close()\n\n            logger.debug(\"Created empty file: %s -> %s\", from_info, to_info)\n            return\n\n        System.hardlink(from_info, to_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/oss.py_logging_OSSTree.__init__.self.key_secret._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/oss.py_logging_OSSTree.__init__.self.key_secret._", "embedding": null, "metadata": {"file_path": "dvc/tree/oss.py", "file_name": "oss.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 60, "span_ids": ["imports", "OSSTree", "OSSTree.__init__"], "tokens": 394}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport threading\n\nfrom funcy import cached_property, wrap_prop\n\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\nclass OSSTree(BaseTree):  # pylint:disable=abstract-method\n    \"\"\"\n    oss2 document:\n    https://www.alibabacloud.com/help/doc-detail/32026.htm\n\n\n    Examples\n    ----------\n    $ dvc remote add myremote oss://my-bucket/path\n    Set key id, key secret and endpoint using modify command\n    $ dvc remote modify myremote oss_key_id my-key-id\n    $ dvc remote modify myremote oss_key_secret my-key-secret\n    $ dvc remote modify myremote oss_endpoint endpoint\n    or environment variables\n    $ export OSS_ACCESS_KEY_ID=\"my-key-id\"\n    $ export OSS_ACCESS_KEY_SECRET=\"my-key-secret\"\n    $ export OSS_ENDPOINT=\"endpoint\"\n    \"\"\"\n\n    scheme = Schemes.OSS\n    PATH_CLS = CloudURLInfo\n    REQUIRES = {\"oss2\": \"oss2\"}\n    PARAM_CHECKSUM = \"etag\"\n    COPY_POLL_SECONDS = 5\n    LIST_OBJECT_PAGE_SIZE = 100\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        url = config.get(\"url\")\n        self.path_info = self.PATH_CLS(url) if url else None\n\n        self.endpoint = config.get(\"oss_endpoint\") or os.getenv(\"OSS_ENDPOINT\")\n\n        self.key_id = (\n            config.get(\"oss_key_id\")\n            or os.getenv(\"OSS_ACCESS_KEY_ID\")\n            or \"defaultId\"\n        )\n\n        self.key_secret = (\n            config.get(\"oss_key_secret\")\n            or os.getenv(\"OSS_ACCESS_KEY_SECRET\")\n            or \"defaultSecret\"\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/oss.py_OSSTree.oss_service_OSSTree.oss_service.return.bucket": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/oss.py_OSSTree.oss_service_OSSTree.oss_service.return.bucket", "embedding": null, "metadata": {"file_path": "dvc/tree/oss.py", "file_name": "oss.py", "file_type": "text/x-python", "category": "implementation", "start_line": 62, "end_line": 84, "span_ids": ["OSSTree.oss_service"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class OSSTree(BaseTree):\n\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def oss_service(self):\n        import oss2\n\n        logger.debug(f\"URL: {self.path_info}\")\n        logger.debug(f\"key id: {self.key_id}\")\n        logger.debug(f\"key secret: {self.key_secret}\")\n\n        auth = oss2.Auth(self.key_id, self.key_secret)\n        bucket = oss2.Bucket(auth, self.endpoint, self.path_info.bucket)\n\n        # Ensure bucket exists\n        try:\n            bucket.get_bucket_info()\n        except oss2.exceptions.NoSuchBucket:\n            bucket.create_bucket(\n                oss2.BUCKET_ACL_PUBLIC_READ,\n                oss2.models.BucketCreateConfig(\n                    oss2.BUCKET_STORAGE_CLASS_STANDARD\n                ),\n            )\n        return bucket", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/oss.py_OSSTree._generate_download_url_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/oss.py_OSSTree._generate_download_url_", "embedding": null, "metadata": {"file_path": "dvc/tree/oss.py", "file_name": "oss.py", "file_type": "text/x-python", "category": "implementation", "start_line": 86, "end_line": 139, "span_ids": ["OSSTree.exists", "OSSTree._upload", "OSSTree._download", "OSSTree.remove", "OSSTree.walk_files", "OSSTree._generate_download_url", "OSSTree._list_paths"], "tokens": 393}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class OSSTree(BaseTree):\n\n    def _generate_download_url(self, path_info, expires=3600):\n        assert path_info.bucket == self.path_info.bucket\n\n        return self.oss_service.sign_url(\"GET\", path_info.path, expires)\n\n    def exists(self, path_info, use_dvcignore=True):\n        paths = self._list_paths(path_info)\n        return any(path_info.path == path for path in paths)\n\n    def _list_paths(self, path_info):\n        import oss2\n\n        for blob in oss2.ObjectIterator(\n            self.oss_service, prefix=path_info.path\n        ):\n            yield blob.key\n\n    def walk_files(self, path_info, **kwargs):\n        if not kwargs.pop(\"prefix\", False):\n            path_info = path_info / \"\"\n        for fname in self._list_paths(path_info):\n            if fname.endswith(\"/\"):\n                continue\n\n            yield path_info.replace(path=fname)\n\n    def remove(self, path_info):\n        if path_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        logger.debug(f\"Removing oss://{path_info}\")\n        self.oss_service.delete_object(path_info.path)\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        with Tqdm(desc=name, disable=no_progress_bar, bytes=True) as pbar:\n            self.oss_service.put_object_from_file(\n                to_info.path, from_file, progress_callback=pbar.update_to\n            )\n\n    def _download(\n        self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs\n    ):\n        with Tqdm(desc=name, disable=no_progress_bar, bytes=True) as pbar:\n            import oss2\n\n            oss2.resumable_download(\n                self.oss_service,\n                from_info.path,\n                to_file,\n                progress_callback=pbar.update_to,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/pool.py_threading_close_pools.get_pool_memory_clear_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/pool.py_threading_close_pools.get_pool_memory_clear_", "embedding": null, "metadata": {"file_path": "dvc/tree/pool.py", "file_name": "pool.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["close_pools", "imports", "get_connection", "get_pool"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import threading\nfrom collections import deque\nfrom contextlib import contextmanager\n\nfrom funcy import memoize, wrap_with\n\n\n@contextmanager\ndef get_connection(conn_func, *args, **kwargs):\n    pool = get_pool(conn_func, *args, **kwargs)\n    conn = pool.get_connection()\n    try:\n        yield conn\n    except Exception:\n        conn.close()\n        raise\n    else:\n        pool.release(conn)\n\n\n@wrap_with(threading.Lock())\n@memoize\ndef get_pool(conn_func, *args, **kwargs):\n    return Pool(conn_func, *args, **kwargs)\n\n\ndef close_pools():\n    for pool in get_pool.memory.values():\n        pool.close()\n    get_pool.memory.clear()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/pool.py_Pool_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/pool.py_Pool_", "embedding": null, "metadata": {"file_path": "dvc/tree/pool.py", "file_name": "pool.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 60, "span_ids": ["Pool.release", "Pool.get_connection", "Pool", "Pool.close", "Pool.__del__", "Pool.__init__"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Pool:\n    def __init__(self, conn_func, *conn_args, **conn_kwargs):\n        self._conn_func = conn_func\n        self._conn_args = conn_args\n        self._conn_kwargs = conn_kwargs\n        self._conns = deque()\n        self._closed = False\n\n    def __del__(self):\n        self.close()\n\n    def close(self):\n        while self._conns:\n            self._conns.pop().close()\n        self._closed = True\n\n    def get_connection(self):\n        try:\n            return self._conns.popleft()\n        except IndexError:\n            return self._conn_func(*self._conn_args, **self._conn_kwargs)\n\n    def release(self, conn):\n        if self._closed:\n            conn.close()\n        else:\n            self._conns.append(conn)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree_RepoTree.__init__.if_hasattr_repo_dvc_dir.self__dvctrees_repo_root_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree_RepoTree.__init__.if_hasattr_repo_dvc_dir.self__dvctrees_repo_root_", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 30, "end_line": 70, "span_ids": ["RepoTree.__init__", "RepoTree"], "tokens": 308}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):  # pylint:disable=abstract-method\n    \"\"\"DVC + git-tracked files tree.\n\n    Args:\n        repo: DVC or git repo.\n        subrepos: traverse to subrepos (by default, it ignores subrepos)\n        repo_factory: A function to initialize subrepo with, default is Repo.\n        kwargs: Additional keyword arguments passed to the `DvcTree()`.\n    \"\"\"\n\n    scheme = \"local\"\n    PARAM_CHECKSUM = \"md5\"\n\n    def __init__(\n        self, repo, subrepos=False, repo_factory: RepoFactory = None, **kwargs\n    ):\n        super().__init__(repo, {\"url\": repo.root_dir})\n\n        if not repo_factory:\n            from dvc.repo import Repo\n\n            self.repo_factory: RepoFactory = Repo\n        else:\n            self.repo_factory = repo_factory\n\n        self._main_repo = repo\n        self.root_dir = repo.root_dir\n        self._traverse_subrepos = subrepos\n\n        self._subrepos_trie = PathStringTrie()\n        \"\"\"Keeps track of each and every path with the corresponding repo.\"\"\"\n\n        self._subrepos_trie[self.root_dir] = repo\n\n        self._dvctrees = {}\n        \"\"\"Keep a dvctree instance of each repo.\"\"\"\n\n        self._dvctree_configs = kwargs\n\n        if hasattr(repo, \"dvc_dir\"):\n            self._dvctrees[repo.root_dir] = DvcTree(repo, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._get_repo_RepoTree._get_repo.return.self__subrepos_trie_get_p": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._get_repo_RepoTree._get_repo.return.self__subrepos_trie_get_p", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 78, "end_line": 98, "span_ids": ["RepoTree._get_repo"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def _get_repo(self, path) -> Optional[\"Repo\"]:\n        \"\"\"Returns repo that the path falls in, using prefix.\n\n        If the path is already tracked/collected, it just returns the repo.\n\n        Otherwise, it collects the repos that might be in the path's parents\n        and then returns the appropriate one.\n        \"\"\"\n        repo = self._subrepos_trie.get(path)\n        if repo:\n            return repo\n\n        prefix, repo = self._subrepos_trie.longest_prefix(path)\n        if not prefix:\n            return None\n\n        parents = (parent.fspath for parent in PathInfo(path).parents)\n        dirs = [path] + list(takewhile(lambda p: p != prefix, parents))\n        dirs.reverse()\n        self._update(dirs, starting_repo=repo)\n        return self._subrepos_trie.get(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._update_RepoTree._is_dvc_repo.return.self__main_repo_tree_isdi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._update_RepoTree._is_dvc_repo.return.self__main_repo_tree_isdi", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 100, "end_line": 121, "span_ids": ["RepoTree._is_dvc_repo", "RepoTree._update"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    @wrap_with(threading.Lock())\n    def _update(self, dirs, starting_repo):\n        \"\"\"Checks for subrepo in directories and updates them.\"\"\"\n        repo = starting_repo\n        for d in dirs:\n            if self._is_dvc_repo(d):\n                repo = self.repo_factory(d)\n                self._dvctrees[repo.root_dir] = DvcTree(\n                    repo, **self._dvctree_configs\n                )\n            self._subrepos_trie[d] = repo\n\n    def _is_dvc_repo(self, dir_path):\n        \"\"\"Check if the directory is a dvc repo.\"\"\"\n        if not self._traverse_subrepos:\n            return False\n\n        from dvc.repo import Repo\n\n        repo_path = os.path.join(dir_path, Repo.DVC_DIR)\n        # dvcignore will ignore subrepos, therefore using `use_dvcignore=False`\n        return self._main_repo.tree.isdir(repo_path, use_dvcignore=False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._get_tree_pair_RepoTree._get_tree_pair.return.repo_tree_dvc_tree": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._get_tree_pair_RepoTree._get_tree_pair.return.repo_tree_dvc_tree", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 117, "end_line": 128, "span_ids": ["RepoTree._get_tree_pair"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def _get_tree_pair(self, path) -> Tuple[BaseTree, Optional[DvcTree]]:\n        \"\"\"\n        Returns a pair of trees based on repo the path falls in, using prefix.\n        \"\"\"\n        path = os.path.abspath(path)\n\n        # fallback to the top-level repo if repo was not found\n        # this can happen if the path is outside of the repo\n        repo = self._get_repo(path) or self._main_repo\n\n        dvc_tree = self._dvctrees.get(repo.root_dir)\n        return repo.tree, dvc_tree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.fetch_RepoTree.open.return.dvc_tree_open_path_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.fetch_RepoTree.open.return.dvc_tree_open_path_info_", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 138, "end_line": 160, "span_ids": ["RepoTree.fetch", "RepoTree.open", "RepoTree.stream"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    @property\n    def fetch(self):\n        return \"fetch\" in self._dvctree_configs\n\n    @property\n    def stream(self):\n        return \"stream\" in self._dvctree_configs\n\n    def open(\n        self, path, mode=\"r\", encoding=\"utf-8\", **kwargs\n    ):  # pylint: disable=arguments-differ\n        if \"b\" in mode:\n            encoding = None\n\n        tree, dvc_tree = self._get_tree_pair(path)\n        path_info = PathInfo(path)\n        try:\n            return tree.open(path_info, mode=mode, encoding=encoding)\n        except FileNotFoundError:\n            if not dvc_tree:\n                raise\n\n        return dvc_tree.open(path_info, mode=mode, encoding=encoding, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.exists_RepoTree.isdir.return.meta_isdir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.exists_RepoTree.isdir.return.meta_isdir", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 162, "end_line": 206, "span_ids": ["RepoTree.exists", "RepoTree.isdir"], "tokens": 266}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def exists(\n        self, path, use_dvcignore=True\n    ):  # pylint: disable=arguments-differ\n        tree, dvc_tree = self._get_tree_pair(path)\n\n        if not dvc_tree:\n            return tree.exists(path)\n\n        if tree.exists(path):\n            return True\n\n        try:\n            meta = dvc_tree.metadata(path)\n        except FileNotFoundError:\n            return False\n\n        (out,) = meta.outs\n        assert len(meta.outs) == 1\n        if tree.exists(out.path_info):\n            return False\n        return True\n\n    def isdir(self, path):  # pylint: disable=arguments-differ\n        tree, dvc_tree = self._get_tree_pair(path)\n\n        try:\n            st = tree.stat(path)\n            return stat.S_ISDIR(st.st_mode)\n        except (OSError, ValueError):\n            # from CPython's os.path.isdir()\n            pass\n\n        if not dvc_tree:\n            return False\n\n        try:\n            meta = dvc_tree.metadata(path)\n        except FileNotFoundError:\n            return False\n\n        (out,) = meta.outs\n        assert len(meta.outs) == 1\n        if tree.exists(out.path_info):\n            return False\n        return meta.isdir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.isdvc_RepoTree.isfile.return.meta_isfile": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.isdvc_RepoTree.isfile.return.meta_isfile", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 208, "end_line": 234, "span_ids": ["RepoTree.isdvc", "RepoTree.isfile"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def isdvc(self, path, **kwargs):\n        _, dvc_tree = self._get_tree_pair(path)\n        return dvc_tree is not None and dvc_tree.isdvc(path, **kwargs)\n\n    def isfile(self, path):  # pylint: disable=arguments-differ\n        tree, dvc_tree = self._get_tree_pair(path)\n\n        try:\n            st = tree.stat(path)\n            return stat.S_ISREG(st.st_mode)\n        except (OSError, ValueError):\n            # from CPython's os.path.isfile()\n            pass\n\n        if not dvc_tree:\n            return False\n\n        try:\n            meta = dvc_tree.metadata(path)\n        except FileNotFoundError:\n            return False\n\n        (out,) = meta.outs\n        assert len(meta.outs) == 1\n        if tree.exists(out.path_info):\n            return False\n        return meta.isfile", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.isexec_RepoTree._dvc_walk.for___in_dirs_.yield_from_self__dvc_walk": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.isexec_RepoTree._dvc_walk.for___in_dirs_.yield_from_self__dvc_walk", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 228, "end_line": 245, "span_ids": ["RepoTree.isexec", "RepoTree.stat", "RepoTree._dvc_walk"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def isexec(self, path_info):\n        tree, dvc_tree = self._get_tree_pair(path_info)\n        if dvc_tree and dvc_tree.exists(path_info):\n            return dvc_tree.isexec(path_info)\n        return tree.isexec(path_info)\n\n    def stat(self, path):\n        tree, _ = self._get_tree_pair(path)\n        return tree.stat(path)\n\n    def _dvc_walk(self, walk):\n        try:\n            root, dirs, files = next(walk)\n        except StopIteration:\n            return\n        yield root, dirs, files\n        for _ in dirs:\n            yield from self._dvc_walk(walk)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._subrepo_walk_RepoTree._subrepo_walk.yield_from_self__walk_tre": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._subrepo_walk_RepoTree._subrepo_walk.yield_from_self__walk_tre", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 255, "end_line": 269, "span_ids": ["RepoTree._subrepo_walk"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def _subrepo_walk(self, dir_path, **kwargs):\n        \"\"\"Walk into a new repo.\n\n         NOTE: subrepo will only be discovered when walking if\n         ignore_subrepos is set to False.\n        \"\"\"\n        tree, dvc_tree = self._get_tree_pair(dir_path)\n        tree_walk = tree.walk(\n            dir_path, topdown=True, ignore_subrepos=not self._traverse_subrepos\n        )\n        if dvc_tree:\n            dvc_walk = dvc_tree.walk(dir_path, topdown=True, **kwargs)\n        else:\n            dvc_walk = None\n        yield from self._walk(tree_walk, dvc_walk, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._walk_RepoTree._walk.for_dirname_in_dirs_.if_dirname_in_subrepos_.elif_dirname_in_repo_set_.yield_from_self__walk_rep": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree._walk_RepoTree._walk.for_dirname_in_dirs_.if_dirname_in_subrepos_.elif_dirname_in_repo_set_.yield_from_self__walk_rep", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 271, "end_line": 317, "span_ids": ["RepoTree._walk"], "tokens": 456}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def _walk(self, repo_walk, dvc_walk=None, dvcfiles=False):\n        assert repo_walk\n        try:\n            _, dvc_dirs, dvc_fnames = (\n                next(dvc_walk) if dvc_walk else (None, [], [])\n            )\n            repo_root, repo_dirs, repo_fnames = next(repo_walk)\n        except StopIteration:\n            return\n\n        # separate subdirs into shared dirs, dvc-only dirs, repo-only dirs\n        dvc_set = set(dvc_dirs)\n        repo_set = set(repo_dirs)\n        dvc_only = list(dvc_set - repo_set)\n        repo_only = list(repo_set - dvc_set)\n        shared = list(dvc_set & repo_set)\n        dirs = shared + dvc_only + repo_only\n\n        # merge file lists\n        files = {\n            fname\n            for fname in dvc_fnames + repo_fnames\n            if dvcfiles or not is_valid_filename(fname)\n        }\n\n        yield repo_root, dirs, list(files)\n\n        def is_dvc_repo(d):\n            return self._is_dvc_repo(os.path.join(repo_root, d))\n\n        # remove subrepos to prevent it from being traversed\n        subrepos = set(filter(is_dvc_repo, repo_only))\n        # set dir order for next recursion level - shared dirs first so that\n        # next() for both generators recurses into the same shared directory\n        dvc_dirs[:] = [dirname for dirname in dirs if dirname in dvc_set]\n        repo_dirs[:] = lfilter(lambda d: d in (repo_set - subrepos), dirs)\n\n        for dirname in dirs:\n            if dirname in subrepos:\n                dir_path = os.path.join(repo_root, dirname)\n                yield from self._subrepo_walk(dir_path, dvcfiles=dvcfiles)\n            elif dirname in shared:\n                yield from self._walk(repo_walk, dvc_walk, dvcfiles=dvcfiles)\n            elif dirname in dvc_set:\n                yield from self._dvc_walk(dvc_walk)\n            elif dirname in repo_set:\n                yield from self._walk(repo_walk, None, dvcfiles=dvcfiles)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.walk_RepoTree.walk.yield_from_self__walk_rep": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.walk_RepoTree.walk.yield_from_self__walk_rep", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 311, "end_line": 369, "span_ids": ["RepoTree.walk"], "tokens": 430}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def walk(\n        self,\n        top,\n        topdown=True,\n        onerror=None,\n        dvcfiles=False,\n        follow_subrepos=None,\n        **kwargs\n    ):  # pylint: disable=arguments-differ\n        \"\"\"Walk and merge both DVC and repo trees.\n\n        Args:\n            top: path to walk from\n            topdown: if True, tree will be walked from top down.\n            onerror: if set, onerror function will be called if an error\n                occurs (by default errors are ignored).\n            dvcfiles: if True, dvcfiles will be included in the files list\n                for walked directories.\n\n        Any kwargs will be passed into methods used for fetching and/or\n        streaming DVC outs from remotes.\n        \"\"\"\n        assert topdown\n\n        if not self.exists(top):\n            if onerror is not None:\n                onerror(FileNotFoundError(top))\n            return\n\n        if not self.isdir(top):\n            if onerror is not None:\n                onerror(NotADirectoryError(top))\n            return\n\n        ignore_subrepos = not self._traverse_subrepos\n        if follow_subrepos is not None:\n            ignore_subrepos = not follow_subrepos\n\n        tree, dvc_tree = self._get_tree_pair(top)\n        repo_exists = tree.exists(top)\n        repo_walk = tree.walk(\n            top,\n            topdown=topdown,\n            onerror=onerror,\n            ignore_subrepos=ignore_subrepos,\n        )\n\n        if not dvc_tree or (repo_exists and dvc_tree.isdvc(top)):\n            yield from self._walk(repo_walk, None, dvcfiles=dvcfiles)\n            return\n\n        if not repo_exists:\n            yield from dvc_tree.walk(top, topdown=topdown, **kwargs)\n\n        dvc_walk = None\n        if dvc_tree.exists(top):\n            dvc_walk = dvc_tree.walk(top, topdown=topdown, **kwargs)\n\n        yield from self._walk(repo_walk, dvc_walk, dvcfiles=dvcfiles)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.walk_files_RepoTree.get_dir_hash.return.dvc_tree_get_dir_hash_pat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.walk_files_RepoTree.get_dir_hash.return.dvc_tree_get_dir_hash_pat", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 371, "end_line": 386, "span_ids": ["RepoTree.get_dir_hash", "RepoTree.walk_files"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def walk_files(self, top, **kwargs):  # pylint: disable=arguments-differ\n        for root, _, files in self.walk(top, **kwargs):\n            for fname in files:\n                yield PathInfo(root) / fname\n\n    def get_dir_hash(\n        self, path_info, follow_subrepos=None, **kwargs\n    ):  # pylint: disable=arguments-differ\n        tree, dvc_tree = self._get_tree_pair(path_info)\n        if tree.exists(path_info):\n            return super().get_dir_hash(\n                path_info, follow_subrepos=follow_subrepos, **kwargs\n            )\n        if not dvc_tree:\n            raise FileNotFoundError\n        return dvc_tree.get_dir_hash(path_info, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.get_file_hash_RepoTree.get_file_hash.return.HashInfo_self_PARAM_CHECK": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.get_file_hash_RepoTree.get_file_hash.return.HashInfo_self_PARAM_CHECK", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 382, "end_line": 397, "span_ids": ["RepoTree.get_file_hash"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def get_file_hash(self, path_info):\n        \"\"\"Return file checksum for specified path.\n\n        If path_info is a DVC out, the pre-computed checksum for the file\n        will be used. If path_info is a git file, MD5 will be computed for\n        the git object.\n        \"\"\"\n        if not self.exists(path_info):\n            raise FileNotFoundError\n        _, dvc_tree = self._get_tree_pair(path_info)\n        if dvc_tree and dvc_tree.exists(path_info):\n            try:\n                return dvc_tree.get_file_hash(path_info)\n            except FileNotFoundError:\n                pass\n        return HashInfo(self.PARAM_CHECKSUM, file_md5(path_info, self)[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.copytree_RepoTree.hash_jobs.return.self__main_repo_tree_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.copytree_RepoTree.hash_jobs.return.self__main_repo_tree_hash", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 399, "end_line": 423, "span_ids": ["RepoTree.hash_jobs", "RepoTree.copytree"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def copytree(self, top, dest):\n        top = PathInfo(top)\n        dest = PathInfo(dest)\n\n        if not self.exists(top):\n            raise FileNotFoundError\n\n        if self.isfile(top):\n            makedirs(dest.parent, exist_ok=True)\n            with self.open(top, mode=\"rb\") as fobj:\n                copy_fobj_to_file(fobj, dest)\n            return\n\n        for root, _, files in self.walk(top):\n            root = PathInfo(root)\n            dest_dir = dest / root.relative_to(top)\n            makedirs(dest_dir, exist_ok=True)\n            for fname in files:\n                src = root / fname\n                with self.open(src, mode=\"rb\") as fobj:\n                    copy_fobj_to_file(fobj, dest_dir / fname)\n\n    @property\n    def hash_jobs(self):  # pylint: disable=invalid-overridden-method\n        return self._main_repo.tree.hash_jobs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.metadata_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_RepoTree.metadata_", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 425, "end_line": 453, "span_ids": ["RepoTree.metadata"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RepoTree(BaseTree):\n\n    def metadata(self, path):\n        abspath = os.path.abspath(path)\n        path_info = PathInfo(abspath)\n        tree, dvc_tree = self._get_tree_pair(path_info)\n\n        dvc_meta = None\n        if dvc_tree:\n            with suppress(FileNotFoundError):\n                dvc_meta = dvc_tree.metadata(path_info)\n\n        stat_result = None\n        with suppress(FileNotFoundError):\n            stat_result = tree.stat(path_info)\n\n        if not stat_result and not dvc_meta:\n            raise FileNotFoundError\n\n        meta = dvc_meta or Metadata(\n            path_info=path_info,\n            repo=self._get_repo(abspath) or self._main_repo,\n        )\n\n        isdir = bool(stat_result) and stat.S_ISDIR(stat_result.st_mode)\n        meta.isdir = meta.isdir or isdir\n\n        if not dvc_meta:\n            meta.is_exec = bool(stat_result) and is_exec(stat_result.st_mode)\n        return meta", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_logging_S3Tree.__init__.if_shared_creds_.os_environ_setdefault_AW": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_logging_S3Tree.__init__.if_shared_creds_.os_environ_setdefault_AW", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 60, "span_ids": ["imports", "S3Tree.__init__", "S3Tree"], "tokens": 423}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport threading\nfrom contextlib import contextmanager\n\nfrom funcy import cached_property, wrap_prop\n\nfrom dvc.config import ConfigError\nfrom dvc.exceptions import DvcException, ETagMismatchError\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\nfrom dvc.utils import error_link\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\nclass S3Tree(BaseTree):\n    scheme = Schemes.S3\n    PATH_CLS = CloudURLInfo\n    REQUIRES = {\"boto3\": \"boto3\"}\n    PARAM_CHECKSUM = \"etag\"\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        url = config.get(\"url\", \"s3://\")\n        self.path_info = self.PATH_CLS(url)\n\n        self.region = config.get(\"region\")\n        self.profile = config.get(\"profile\")\n        self.endpoint_url = config.get(\"endpointurl\")\n\n        self.use_ssl = config.get(\"use_ssl\", True)\n\n        self.extra_args = {}\n\n        self.sse = config.get(\"sse\")\n        if self.sse:\n            self.extra_args[\"ServerSideEncryption\"] = self.sse\n\n        self.sse_kms_key_id = config.get(\"sse_kms_key_id\")\n        if self.sse_kms_key_id:\n            self.extra_args[\"SSEKMSKeyId\"] = self.sse_kms_key_id\n\n        self.acl = config.get(\"acl\")\n        if self.acl:\n            self.extra_args[\"ACL\"] = self.acl\n\n        self._append_aws_grants_to_extra_args(config)\n\n        self.access_key_id = config.get(\"access_key_id\")\n        self.secret_access_key = config.get(\"secret_access_key\")\n\n        shared_creds = config.get(\"credentialpath\")\n        if shared_creds:\n            os.environ.setdefault(\"AWS_SHARED_CREDENTIALS_FILE\", shared_creds)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.s3_S3Tree.s3.return.session_resource_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.s3_S3Tree.s3.return.session_resource_", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 62, "end_line": 81, "span_ids": ["S3Tree.s3"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def s3(self):\n        import boto3\n\n        session_opts = {\n            \"profile_name\": self.profile,\n            \"region_name\": self.region,\n        }\n\n        if self.access_key_id:\n            session_opts[\"aws_access_key_id\"] = self.access_key_id\n        if self.secret_access_key:\n            session_opts[\"aws_secret_access_key\"] = self.secret_access_key\n\n        session = boto3.session.Session(**session_opts)\n\n        return session.resource(\n            \"s3\", endpoint_url=self.endpoint_url, use_ssl=self.use_ssl\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._get_s3_S3Tree._get_s3.try_.except_EndpointConnection.raise_DvcException_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._get_s3_S3Tree._get_s3.try_.except_EndpointConnection.raise_DvcException_", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 80, "end_line": 99, "span_ids": ["S3Tree._get_s3"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    @contextmanager\n    def _get_s3(self):\n        from botocore.exceptions import (\n            EndpointConnectionError,\n            NoCredentialsError,\n        )\n\n        try:\n            yield self.s3\n        except NoCredentialsError as exc:\n            link = error_link(\"no-credentials\")\n            raise DvcException(\n                f\"Unable to find AWS credentials. {link}\"\n            ) from exc\n        except EndpointConnectionError as exc:\n            link = error_link(\"connection-error\")\n            name = self.endpoint_url or \"AWS S3\"\n            raise DvcException(\n                f\"Unable to connect to '{name}'. {link}\"\n            ) from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._get_bucket_S3Tree._get_obj.with_self__get_bucket_pat.try_.except_bucket_meta_client.raise_DvcException_f_pat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._get_bucket_S3Tree._get_obj.with_self__get_bucket_pat.try_.except_bucket_meta_client.raise_DvcException_f_pat", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 101, "end_line": 118, "span_ids": ["S3Tree._get_obj", "S3Tree._get_bucket"], "tokens": 158}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    @contextmanager\n    def _get_bucket(self, bucket):\n        with self._get_s3() as s3:\n            try:\n                yield s3.Bucket(bucket)\n            except s3.meta.client.exceptions.NoSuchBucket as exc:\n                link = error_link(\"no-bucket\")\n                raise DvcException(\n                    f\"Bucket '{bucket}' does not exist. {link}\"\n                ) from exc\n\n    @contextmanager\n    def _get_obj(self, path_info):\n        with self._get_bucket(path_info.bucket) as bucket:\n            try:\n                yield bucket.Object(path_info.path)\n            except bucket.meta.client.exceptions.NoSuchKey as exc:\n                raise DvcException(f\"{path_info.url} does not exist\") from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._append_aws_grants_to_extra_args_S3Tree._append_aws_grants_to_extra_args.for_grant_option_extra_a.if_config_get_grant_optio.self_extra_args_extra_arg": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._append_aws_grants_to_extra_args_S3Tree._append_aws_grants_to_extra_args.for_grant_option_extra_a.if_config_get_grant_optio.self_extra_args_extra_arg", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 120, "end_line": 149, "span_ids": ["S3Tree._append_aws_grants_to_extra_args"], "tokens": 304}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    def _append_aws_grants_to_extra_args(self, config):\n        # Keys for extra_args can be one of the following list:\n        # https://boto3.amazonaws.com/v1/documentation/api/latest/reference/customizations/s3.html#boto3.s3.transfer.S3Transfer.ALLOWED_UPLOAD_ARGS\n        \"\"\"\n          ALLOWED_UPLOAD_ARGS = [\n            'ACL', 'CacheControl', 'ContentDisposition', 'ContentEncoding',\n            'ContentLanguage', 'ContentType', 'Expires', 'GrantFullControl',\n            'GrantRead', 'GrantReadACP', 'GrantWriteACP', 'Metadata',\n            'RequestPayer', 'ServerSideEncryption', 'StorageClass',\n            'SSECustomerAlgorithm', 'SSECustomerKey', 'SSECustomerKeyMD5',\n            'SSEKMSKeyId', 'WebsiteRedirectLocation'\n          ]\n        \"\"\"\n\n        grants = {\n            \"grant_full_control\": \"GrantFullControl\",\n            \"grant_read\": \"GrantRead\",\n            \"grant_read_acp\": \"GrantReadACP\",\n            \"grant_write_acp\": \"GrantWriteACP\",\n        }\n\n        for grant_option, extra_args_key in grants.items():\n            if config.get(grant_option):\n                if self.acl:\n                    raise ConfigError(\n                        \"`acl` and `grant_*` AWS S3 config options \"\n                        \"are mutually exclusive\"\n                    )\n\n                self.extra_args[extra_args_key] = config.get(grant_option)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._generate_download_url_S3Tree.exists.return.self_isfile_path_info_or": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._generate_download_url_S3Tree.exists.return.self_isfile_path_info_or", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 151, "end_line": 166, "span_ids": ["S3Tree._generate_download_url", "S3Tree.exists"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    def _generate_download_url(self, path_info, expires=3600):\n        params = {\"Bucket\": path_info.bucket, \"Key\": path_info.path}\n        with self._get_s3() as s3:\n            return s3.meta.client.generate_presigned_url(\n                ClientMethod=\"get_object\",\n                Params=params,\n                ExpiresIn=int(expires),\n            )\n\n    def exists(self, path_info, use_dvcignore=True):\n        \"\"\"Check if the blob exists. If it does not exist,\n        it could be a part of a directory path.\n\n        eg: if `data/file.txt` exists, check for `data` should return True\n        \"\"\"\n        return self.isfile(path_info) or self.isdir(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.isdir_S3Tree.isdir.return.bool_list_self__list_path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.isdir_S3Tree.isdir.return.bool_list_self__list_path", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 168, "end_line": 190, "span_ids": ["S3Tree.isdir"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    def isdir(self, path_info):\n        # S3 doesn't have a concept for directories.\n        #\n        # Using `head_object` with a path pointing to a directory\n        # will throw a 404 error.\n        #\n        # A reliable way to know if a given path is a directory is by\n        # checking if there are more files sharing the same prefix\n        # with a `list_objects` call.\n        #\n        # We need to make sure that the path ends with a forward slash,\n        # since we can end with false-positives like the following example:\n        #\n        #       bucket\n        #       \u2514\u2500\u2500 data\n        #          \u251c\u2500\u2500 alice\n        #          \u2514\u2500\u2500 alpha\n        #\n        # Using `data/al` as prefix will return `[data/alice, data/alpha]`,\n        # While `data/al/` will return nothing.\n        #\n        dir_path = path_info / \"\"\n        return bool(list(self._list_paths(dir_path, max_items=1)))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.isfile_S3Tree.copy.with_self__get_s3_as_s3.self__copy_s3_meta_client": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.isfile_S3Tree.copy.with_self__get_s3_as_s3.self__copy_s3_meta_client", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 192, "end_line": 239, "span_ids": ["S3Tree.remove", "S3Tree.makedirs", "S3Tree._list_paths", "S3Tree.walk_files", "S3Tree.copy", "S3Tree.isfile"], "tokens": 362}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    def isfile(self, path_info):\n        if path_info.path.endswith(\"/\"):\n            return False\n\n        return path_info.path in self._list_paths(path_info)\n\n    def _list_paths(self, path_info, max_items=None):\n        kwargs = {\"Prefix\": path_info.path}\n        if max_items is not None:\n            kwargs[\"MaxKeys\"] = max_items\n\n        with self._get_bucket(path_info.bucket) as bucket:\n            for obj_summary in bucket.objects.filter(**kwargs):\n                yield obj_summary.key\n\n    def walk_files(self, path_info, **kwargs):\n        if not kwargs.pop(\"prefix\", False):\n            path_info = path_info / \"\"\n        for fname in self._list_paths(path_info, **kwargs):\n            if fname.endswith(\"/\"):\n                continue\n\n            yield path_info.replace(path=fname)\n\n    def remove(self, path_info):\n        if path_info.scheme != \"s3\":\n            raise NotImplementedError\n\n        logger.debug(f\"Removing {path_info}\")\n        with self._get_obj(path_info) as obj:\n            obj.delete()\n\n    def makedirs(self, path_info):\n        # We need to support creating empty directories, which means\n        # creating an object with an empty body and a trailing slash `/`.\n        #\n        # We are not creating directory objects for every parent prefix,\n        # as it is not required.\n        if not path_info.path:\n            return\n\n        dir_path = path_info / \"\"\n        with self._get_obj(dir_path) as obj:\n            obj.put(Body=\"\")\n\n    def copy(self, from_info, to_info):\n        with self._get_s3() as s3:\n            self._copy(s3.meta.client, from_info, to_info, self.extra_args)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._copy_multipart_S3Tree._copy_multipart.s3_complete_multipart_upl": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._copy_multipart_S3Tree._copy_multipart.s3_complete_multipart_upl", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 241, "end_line": 283, "span_ids": ["S3Tree._copy_multipart"], "tokens": 328}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    @classmethod\n    def _copy_multipart(\n        cls, s3, from_info, to_info, size, n_parts, extra_args\n    ):\n        mpu = s3.create_multipart_upload(\n            Bucket=to_info.bucket, Key=to_info.path, **extra_args\n        )\n        mpu_id = mpu[\"UploadId\"]\n\n        parts = []\n        byte_position = 0\n        for i in range(1, n_parts + 1):\n            obj = s3.head_object(\n                Bucket=from_info.bucket, Key=from_info.path, PartNumber=i\n            )\n            part_size = obj[\"ContentLength\"]\n            lastbyte = byte_position + part_size - 1\n            if lastbyte > size:\n                lastbyte = size - 1\n\n            srange = f\"bytes={byte_position}-{lastbyte}\"\n\n            part = s3.upload_part_copy(\n                Bucket=to_info.bucket,\n                Key=to_info.path,\n                PartNumber=i,\n                UploadId=mpu_id,\n                CopySourceRange=srange,\n                CopySource={\"Bucket\": from_info.bucket, \"Key\": from_info.path},\n            )\n            parts.append(\n                {\"PartNumber\": i, \"ETag\": part[\"CopyPartResult\"][\"ETag\"]}\n            )\n            byte_position += part_size\n\n        assert n_parts == len(parts)\n\n        s3.complete_multipart_upload(\n            Bucket=to_info.bucket,\n            Key=to_info.path,\n            UploadId=mpu_id,\n            MultipartUpload={\"Parts\": parts},\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._copy_S3Tree._copy.if_etag_cached_etag_.raise_ETagMismatchError_e": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree._copy_S3Tree._copy.if_etag_cached_etag_.raise_ETagMismatchError_e", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 285, "end_line": 332, "span_ids": ["S3Tree._copy"], "tokens": 553}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    @classmethod\n    def _copy(cls, s3, from_info, to_info, extra_args):\n        # NOTE: object's etag depends on the way it was uploaded to s3 or the\n        # way it was copied within the s3. More specifically, it depends on\n        # the chunk size that was used to transfer it, which would affect\n        # whether an object would be uploaded as a single part or as a\n        # multipart.\n        #\n        # If an object's etag looks like '8978c98bb5a48c2fb5f2c4c905768afa',\n        # then it was transferred as a single part, which means that the chunk\n        # size used to transfer it was greater or equal to the ContentLength\n        # of that object. So to preserve that tag over the next transfer, we\n        # could use any value >= ContentLength.\n        #\n        # If an object's etag looks like '50d67013a5e1a4070bef1fc8eea4d5f9-13',\n        # then it was transferred as a multipart, which means that the chunk\n        # size used to transfer it was less than ContentLength of that object.\n        # Unfortunately, in general, it doesn't mean that the chunk size was\n        # the same throughout the transfer, so it means that in order to\n        # preserve etag, we need to transfer each part separately, so the\n        # object is transfered in the same chunks as it was originally.\n        from boto3.s3.transfer import TransferConfig\n\n        obj = s3.head_object(Bucket=from_info.bucket, Key=from_info.path)\n        etag = obj[\"ETag\"].strip('\"')\n        size = obj[\"ContentLength\"]\n\n        _, _, parts_suffix = etag.partition(\"-\")\n        if parts_suffix:\n            n_parts = int(parts_suffix)\n            cls._copy_multipart(\n                s3, from_info, to_info, size, n_parts, extra_args=extra_args\n            )\n        else:\n            source = {\"Bucket\": from_info.bucket, \"Key\": from_info.path}\n            s3.copy(\n                source,\n                to_info.bucket,\n                to_info.path,\n                ExtraArgs=extra_args,\n                Config=TransferConfig(multipart_threshold=size + 1),\n            )\n\n        cached_etag = s3.head_object(Bucket=to_info.bucket, Key=to_info.path)[\n            \"ETag\"\n        ].strip('\"')\n        if etag != cached_etag:\n            raise ETagMismatchError(etag, cached_etag)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.get_file_hash_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/s3.py_S3Tree.get_file_hash_", "embedding": null, "metadata": {"file_path": "dvc/tree/s3.py", "file_name": "s3.py", "file_type": "text/x-python", "category": "implementation", "start_line": 337, "end_line": 366, "span_ids": ["S3Tree.get_file_hash", "S3Tree._upload", "S3Tree._download"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class S3Tree(BaseTree):\n\n    def get_file_hash(self, path_info):\n        with self._get_obj(path_info) as obj:\n            return HashInfo(\n                self.PARAM_CHECKSUM,\n                obj.e_tag.strip('\"'),\n                size=obj.content_length,\n            )\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        with self._get_obj(to_info) as obj:\n            total = os.path.getsize(from_file)\n            with Tqdm(\n                disable=no_progress_bar, total=total, bytes=True, desc=name\n            ) as pbar:\n                obj.upload_file(\n                    from_file, Callback=pbar.update, ExtraArgs=self.extra_args,\n                )\n\n    def _download(self, from_info, to_file, name=None, no_progress_bar=False):\n        with self._get_obj(from_info) as obj:\n            with Tqdm(\n                disable=no_progress_bar,\n                total=obj.content_length,\n                bytes=True,\n                desc=name,\n            ) as pbar:\n                obj.download_file(to_file, Callback=pbar.update)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_getpass_ask_password.return.prompt_password_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_getpass_ask_password.return.prompt_password_", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["imports", "ask_password"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import getpass\nimport io\nimport logging\nimport os\nimport threading\nfrom contextlib import closing, contextmanager\nfrom urllib.parse import urlparse\n\nfrom funcy import first, memoize, silent, wrap_with\n\nimport dvc.prompt as prompt\nfrom dvc.hash_info import HashInfo\nfrom dvc.scheme import Schemes\n\nfrom ..base import BaseTree\nfrom ..pool import get_connection\n\nlogger = logging.getLogger(__name__)\n\n\n@wrap_with(threading.Lock())\n@memoize\ndef ask_password(host, user, port):\n    return prompt.password(\n        \"Enter a private key passphrase or a password for \"\n        \"host '{host}' port '{port}' user '{user}'\".format(\n            host=host, port=port, user=user\n        )\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree_SSHTree.ssh.return.get_connection_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree_SSHTree.ssh.return.get_connection_", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 33, "end_line": 148, "span_ids": ["SSHTree._try_get_ssh_config_port", "SSHTree._try_get_ssh_config_keyfile", "SSHTree.__init__", "SSHTree", "SSHTree.ssh_config_filename", "SSHTree.ssh", "SSHTree.ensure_credentials", "SSHTree._load_user_ssh_config"], "tokens": 830}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHTree(BaseTree):\n    scheme = Schemes.SSH\n    REQUIRES = {\"paramiko\": \"paramiko\"}\n    JOBS = 4\n\n    PARAM_CHECKSUM = \"md5\"\n    # At any given time some of the connections will go over network and\n    # paramiko stuff, so we would ideally have it double of server processors.\n    # We use conservative setting of 4 instead to not exhaust max sessions.\n    CHECKSUM_JOBS = 4\n    DEFAULT_CACHE_TYPES = [\"copy\"]\n    TRAVERSE_PREFIX_LEN = 2\n\n    DEFAULT_PORT = 22\n    TIMEOUT = 1800\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n        url = config.get(\"url\")\n        if url:\n            parsed = urlparse(url)\n            user_ssh_config = self._load_user_ssh_config(parsed.hostname)\n\n            host = user_ssh_config.get(\"hostname\", parsed.hostname)\n            user = (\n                config.get(\"user\")\n                or parsed.username\n                or user_ssh_config.get(\"user\")\n                or getpass.getuser()\n            )\n            port = (\n                config.get(\"port\")\n                or parsed.port\n                or self._try_get_ssh_config_port(user_ssh_config)\n                or self.DEFAULT_PORT\n            )\n            self.path_info = self.PATH_CLS.from_parts(\n                scheme=self.scheme,\n                host=host,\n                user=user,\n                port=port,\n                path=parsed.path,\n            )\n        else:\n            self.path_info = None\n            user_ssh_config = {}\n\n        self.keyfile = config.get(\n            \"keyfile\"\n        ) or self._try_get_ssh_config_keyfile(user_ssh_config)\n        self.timeout = config.get(\"timeout\", self.TIMEOUT)\n        self.password = config.get(\"password\", None)\n        self.ask_password = config.get(\"ask_password\", False)\n        self.gss_auth = config.get(\"gss_auth\", False)\n        proxy_command = user_ssh_config.get(\"proxycommand\", False)\n        if proxy_command:\n            import paramiko\n\n            self.sock = paramiko.ProxyCommand(proxy_command)\n        else:\n            self.sock = None\n        self.allow_agent = config.get(\"allow_agent\", True)\n\n    @staticmethod\n    def ssh_config_filename():\n        return os.path.expanduser(os.path.join(\"~\", \".ssh\", \"config\"))\n\n    @staticmethod\n    def _load_user_ssh_config(hostname):\n        import paramiko\n\n        user_config_file = SSHTree.ssh_config_filename()\n        user_ssh_config = {}\n        if hostname and os.path.exists(user_config_file):\n            ssh_config = paramiko.SSHConfig()\n            with open(user_config_file) as f:\n                # For whatever reason parsing directly from f is unreliable\n                f_copy = io.StringIO(f.read())\n                ssh_config.parse(f_copy)\n            user_ssh_config = ssh_config.lookup(hostname)\n        return user_ssh_config\n\n    @staticmethod\n    def _try_get_ssh_config_port(user_ssh_config):\n        return silent(int)(user_ssh_config.get(\"port\"))\n\n    @staticmethod\n    def _try_get_ssh_config_keyfile(user_ssh_config):\n        return first(user_ssh_config.get(\"identityfile\") or ())\n\n    def ensure_credentials(self, path_info=None):\n        if path_info is None:\n            path_info = self.path_info\n\n        # NOTE: we use the same password regardless of the server :(\n        if self.ask_password and self.password is None:\n            host, user, port = path_info.host, path_info.user, path_info.port\n            self.password = ask_password(host, user, port)\n\n    def ssh(self, path_info):\n        self.ensure_credentials(path_info)\n\n        from .connection import SSHConnection\n\n        return get_connection(\n            SSHConnection,\n            path_info.host,\n            username=path_info.user,\n            port=path_info.port,\n            key_filename=self.keyfile,\n            timeout=self.timeout,\n            password=self.password,\n            gss_auth=self.gss_auth,\n            sock=self.sock,\n            allow_agent=self.allow_agent,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree.open_SSHTree.symlink.with_self_ssh_from_info_.ssh_symlink_from_info_pat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree.open_SSHTree.symlink.with_self_ssh_from_info_.ssh_symlink_from_info_pat", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 150, "end_line": 210, "span_ids": ["SSHTree.makedirs", "SSHTree.move", "SSHTree.copy", "SSHTree.isfile", "SSHTree.remove", "SSHTree.open", "SSHTree.symlink", "SSHTree.exists", "SSHTree.walk_files", "SSHTree.isdir"], "tokens": 464}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHTree(BaseTree):\n\n    @contextmanager\n    def open(self, path_info, mode=\"r\", encoding=None):\n        assert mode in {\"r\", \"rt\", \"rb\", \"wb\"}\n\n        with self.ssh(path_info) as ssh, closing(\n            ssh.sftp.open(path_info.path, mode)\n        ) as fd:\n            if \"b\" in mode:\n                yield fd\n            else:\n                yield io.TextIOWrapper(fd, encoding=encoding)\n\n    def exists(self, path_info, use_dvcignore=True):\n        with self.ssh(path_info) as ssh:\n            return ssh.exists(path_info.path)\n\n    def isdir(self, path_info):\n        with self.ssh(path_info) as ssh:\n            return ssh.isdir(path_info.path)\n\n    def isfile(self, path_info):\n        with self.ssh(path_info) as ssh:\n            return ssh.isfile(path_info.path)\n\n    def walk_files(self, path_info, **kwargs):\n        with self.ssh(path_info) as ssh:\n            for fname in ssh.walk_files(path_info.path):\n                yield path_info.replace(path=fname)\n\n    def remove(self, path_info):\n        if path_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        with self.ssh(path_info) as ssh:\n            ssh.remove(path_info.path)\n\n    def makedirs(self, path_info):\n        with self.ssh(path_info) as ssh:\n            ssh.makedirs(path_info.path)\n\n    def move(self, from_info, to_info, mode=None):\n        assert mode is None\n        if from_info.scheme != self.scheme or to_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        with self.ssh(from_info) as ssh:\n            ssh.move(from_info.path, to_info.path)\n\n    def copy(self, from_info, to_info):\n        if not from_info.scheme == to_info.scheme == self.scheme:\n            raise NotImplementedError\n\n        with self.ssh(from_info) as ssh:\n            ssh.atomic_copy(from_info.path, to_info.path)\n\n    def symlink(self, from_info, to_info):\n        if not from_info.scheme == to_info.scheme == self.scheme:\n            raise NotImplementedError\n\n        with self.ssh(from_info) as ssh:\n            ssh.symlink(from_info.path, to_info.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree.hardlink_SSHTree.hardlink.with_self_ssh_from_info_.ssh_hardlink_from_info_pa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree.hardlink_SSHTree.hardlink.with_self_ssh_from_info_.ssh_hardlink_from_info_pa", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 212, "end_line": 230, "span_ids": ["SSHTree.hardlink"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHTree(BaseTree):\n\n    def hardlink(self, from_info, to_info):\n        if not from_info.scheme == to_info.scheme == self.scheme:\n            raise NotImplementedError\n\n        # See dvc/remote/local/__init__.py - hardlink()\n        if self.getsize(from_info) == 0:\n\n            with self.ssh(to_info) as ssh:\n                ssh.sftp.open(to_info.path, \"w\").close()\n\n            logger.debug(\n                \"Created empty file: {src} -> {dest}\".format(\n                    src=str(from_info), dest=str(to_info)\n                )\n            )\n            return\n\n        with self.ssh(from_info) as ssh:\n            ssh.hardlink(from_info.path, to_info.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree.reflink_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/__init__.py_SSHTree.reflink_", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 231, "end_line": 273, "span_ids": ["SSHTree._upload", "SSHTree._download", "SSHTree.get_file_hash", "SSHTree.getsize", "SSHTree.reflink"], "tokens": 292}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHTree(BaseTree):\n\n    def reflink(self, from_info, to_info):\n        if from_info.scheme != self.scheme or to_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        with self.ssh(from_info) as ssh:\n            ssh.reflink(from_info.path, to_info.path)\n\n    def get_file_hash(self, path_info):\n        if path_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        with self.ssh(path_info) as ssh:\n            hash_info = HashInfo(self.PARAM_CHECKSUM, ssh.md5(path_info.path),)\n\n            if hash_info:\n                hash_info.size = ssh.getsize(path_info.path)\n\n            return hash_info\n\n    def getsize(self, path_info):\n        with self.ssh(path_info) as ssh:\n            return ssh.getsize(path_info.path)\n\n    def _download(self, from_info, to_file, name=None, no_progress_bar=False):\n        with self.ssh(from_info) as ssh:\n            ssh.download(\n                from_info.path,\n                to_file,\n                progress_title=name,\n                no_progress_bar=no_progress_bar,\n            )\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        with self.ssh(to_info) as ssh:\n            ssh.upload(\n                from_file,\n                to_info.path,\n                progress_title=name,\n                no_progress_bar=no_progress_bar,\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_errno_sizeof_fmt.return._1f_format_num_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_errno_sizeof_fmt.return._1f_format_num_", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 32, "span_ids": ["imports", "sizeof_fmt"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport logging\nimport os\nimport posixpath\nimport shlex\nimport stat\nfrom contextlib import suppress\n\nfrom funcy import cached_property\n\nfrom dvc.exceptions import DvcException\nfrom dvc.progress import Tqdm\nfrom dvc.utils import tmp_fname\n\nfrom ..base import RemoteCmdError\n\ntry:\n    import paramiko\nexcept ImportError:\n    paramiko = None\n\n\nlogger = logging.getLogger(__name__)\n\n\ndef sizeof_fmt(num, suffix=\"B\"):\n    \"\"\" Convert number of bytes to human-readable string \"\"\"\n    for unit in [\"\", \"K\", \"M\", \"G\", \"T\", \"P\", \"E\", \"Z\"]:\n        if abs(num) < 1024.0:\n            return f\"{num:3.1f}{unit}{suffix}\"\n        num /= 1024.0\n    return \"{:.1f}{}{}\".format(num, \"Y\", suffix)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection_SSHConnection.islink.return.stat_S_ISLNK_self_st_mode": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection_SSHConnection.islink.return.stat_S_ISLNK_self_st_mode", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 35, "end_line": 96, "span_ids": ["SSHConnection.sftp", "SSHConnection.isfile", "SSHConnection", "SSHConnection.islink", "SSHConnection.getsize", "SSHConnection.exists", "SSHConnection.__init__", "SSHConnection.isdir", "SSHConnection.st_mode", "SSHConnection.close"], "tokens": 467}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n    def __init__(self, host, *args, **kwargs):\n        logger.debug(\n            \"Establishing ssh connection with '{host}' \"\n            \"through port '{port}' as user '{username}'\".format(\n                host=host, **kwargs\n            )\n        )\n        self.timeout = kwargs.get(\"timeout\", 1800)\n\n        self._ssh = paramiko.SSHClient()\n\n        # Explicitly disable paramiko logger. Due to how paramiko dynamically\n        # loads loggers, it is not disabled by DVC disable_other_loggers().\n        # See https://github.com/iterative/dvc/issues/3482\n        self._ssh.set_log_channel(\"dvc.paramiko\")\n        logging.getLogger(\"dvc.paramiko\").disabled = True\n        logging.getLogger(\"dvc.paramiko.sftp\").disabled = True\n\n        self._ssh.load_system_host_keys()\n        self._ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy())\n\n        self._ssh.connect(host, *args, **kwargs)\n        self._ssh.get_transport().set_keepalive(10)\n        self._sftp_channels = []\n\n    @property\n    def sftp(self):\n        if not self._sftp_channels:\n            self._sftp_channels = [self._ssh.open_sftp()]\n        return self._sftp_channels[0]\n\n    def close(self):\n        for sftp in self._sftp_channels:\n            sftp.close()\n        self._ssh.close()\n\n    def st_mode(self, path):\n        lstat = None\n        with suppress(FileNotFoundError):\n            lstat = self.sftp.lstat(path)\n\n        return lstat.st_mode if lstat else 0\n\n    def getsize(self, path):\n        lstat = None\n        with suppress(FileNotFoundError):\n            lstat = self.sftp.lstat(path)\n\n        return lstat.st_size if lstat else 0\n\n    def exists(self, path):\n        return bool(self.st_mode(path))\n\n    def isdir(self, path):\n        return stat.S_ISDIR(self.st_mode(path))\n\n    def isfile(self, path):\n        return stat.S_ISREG(self.st_mode(path))\n\n    def islink(self, path):\n        return stat.S_ISLNK(self.st_mode(path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.makedirs_SSHConnection.makedirs.if_tail_.try_.except_OSError_as_exc_.if_exc_errno_errno_EAC.raise_DvcException_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.makedirs_SSHConnection.makedirs.if_tail_.try_.except_OSError_as_exc_.if_exc_errno_errno_EAC.raise_DvcException_", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 95, "end_line": 121, "span_ids": ["SSHConnection.makedirs"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n\n    def makedirs(self, path):\n        # Single stat call will say whether this is a dir, a file or a link\n        st_mode = self.st_mode(path)\n\n        if stat.S_ISDIR(st_mode):\n            return\n\n        if stat.S_ISREG(st_mode) or stat.S_ISLNK(st_mode):\n            raise DvcException(\n                f\"a file with the same name '{path}' already exists\"\n            )\n\n        head, tail = posixpath.split(path)\n\n        if head:\n            self.makedirs(head)\n\n        if tail:\n            try:\n                self.sftp.mkdir(path)\n            except OSError as exc:\n                # Since paramiko errors are very vague we need to recheck\n                # whether it's because path already exists or something else\n                if exc.errno == errno.EACCES or not self.exists(path):\n                    raise DvcException(\n                        f\"unable to create remote directory '{path}'\"\n                    ) from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.walk_SSHConnection.walk.if_not_topdown_.yield_directory_dirs_no": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.walk_SSHConnection.walk.if_not_topdown_.yield_directory_dirs_no", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 123, "end_line": 154, "span_ids": ["SSHConnection.walk"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n\n    def walk(self, directory, topdown=True):\n        # NOTE: original os.walk() implementation [1] with default options was\n        # used as a template.\n        #\n        # [1] https://github.com/python/cpython/blob/master/Lib/os.py\n        try:\n            dir_entries = self.sftp.listdir_attr(directory)\n        except OSError as exc:\n            raise DvcException(\n                \"couldn't get the '{}' remote directory files list\".format(\n                    directory\n                )\n            ) from exc\n\n        dirs = []\n        nondirs = []\n        for entry in dir_entries:\n            name = entry.filename\n            if stat.S_ISDIR(entry.st_mode):\n                dirs.append(name)\n            else:\n                nondirs.append(name)\n\n        if topdown:\n            yield directory, dirs, nondirs\n\n        for dname in dirs:\n            newpath = posixpath.join(directory, dname)\n            yield from self.walk(newpath, topdown=topdown)\n\n        if not topdown:\n            yield directory, dirs, nondirs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.walk_files_SSHConnection.upload.self_sftp_rename_tmp_file": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.walk_files_SSHConnection.upload.self_sftp_rename_tmp_file", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 156, "end_line": 225, "span_ids": ["SSHConnection.download", "SSHConnection.walk_files", "SSHConnection.upload", "SSHConnection._remove_dir", "SSHConnection.move", "SSHConnection._remove_file", "SSHConnection.atomic_copy", "SSHConnection.remove"], "tokens": 480}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n\n    def walk_files(self, directory):\n        for root, _, files in self.walk(directory):\n            for fname in files:\n                yield posixpath.join(root, fname)\n\n    def _remove_file(self, path):\n        with suppress(FileNotFoundError):\n            self.sftp.remove(path)\n\n    def _remove_dir(self, path):\n        for root, dirs, files in self.walk(path, topdown=False):\n            for fname in files:\n                with suppress(FileNotFoundError):\n                    self._remove_file(posixpath.join(root, fname))\n\n            for dname in dirs:\n                with suppress(FileNotFoundError):\n                    self.sftp.rmdir(posixpath.join(root, dname))\n\n        with suppress(FileNotFoundError):\n            self.sftp.rmdir(path)\n\n    def remove(self, path):\n        if self.isdir(path):\n            self._remove_dir(path)\n        else:\n            self._remove_file(path)\n\n    def download(self, src, dest, no_progress_bar=False, progress_title=None):\n        with Tqdm(\n            desc=progress_title or os.path.basename(src),\n            disable=no_progress_bar,\n            bytes=True,\n        ) as pbar:\n            self.sftp.get(src, dest, callback=pbar.update_to)\n\n    def move(self, src, dst):\n        \"\"\"Rename src to dst, if it is not possible (in case src and dst are\n        on different filesystems) and actual physical copying of data is\n        happening.\n        \"\"\"\n        self.makedirs(posixpath.dirname(dst))\n\n        try:\n            self.sftp.rename(src, dst)\n        except OSError:\n            self.atomic_copy(src, dst)\n            self.remove(src)\n\n    def atomic_copy(self, src, dst):\n        tmp = tmp_fname(dst)\n\n        try:\n            self.copy(src, tmp)\n            self.sftp.rename(tmp, dst)\n        finally:\n            self.remove(tmp)\n\n    def upload(self, src, dest, no_progress_bar=False, progress_title=None):\n        self.makedirs(posixpath.dirname(dest))\n        tmp_file = tmp_fname(dest)\n        if not progress_title:\n            progress_title = posixpath.basename(dest)\n\n        with Tqdm(\n            desc=progress_title, disable=no_progress_bar, bytes=True\n        ) as pbar:\n            self.sftp.put(src, tmp_file, callback=pbar.update_to)\n\n        self.sftp.rename(tmp_file, dest)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.execute_SSHConnection.execute.return.b_join_stdout_chunks_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.execute_SSHConnection.execute.return.b_join_stdout_chunks_d", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 227, "end_line": 278, "span_ids": ["SSHConnection.execute"], "tokens": 302}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n\n    def execute(self, cmd):\n        stdin, stdout, stderr = self._ssh.exec_command(cmd)\n        channel = stdout.channel\n\n        stdin.close()\n        channel.shutdown_write()\n\n        stdout_chunks = []\n        stderr_chunks = []\n        while (\n            not channel.closed\n            or channel.recv_ready()\n            or channel.recv_stderr_ready()\n        ):\n            import selectors\n\n            selector = selectors.DefaultSelector()\n            selector.register(stdout.channel, selectors.EVENT_READ)\n\n            got_chunk = False\n            events = selector.select(self.timeout)\n            for key, _ in events:\n                c = key.fileobj\n                if c.recv_ready():\n                    stdout_chunks.append(stdout.channel.recv(len(c.in_buffer)))\n                    got_chunk = True\n\n                if c.recv_stderr_ready():\n                    stderr_len = len(c.in_stderr_buffer)\n                    s = stderr.channel.recv_stderr(stderr_len)\n                    stderr_chunks.append(s)\n                    got_chunk = True\n\n            if (\n                not got_chunk\n                and stdout.channel.exit_status_ready()\n                and not stderr.channel.recv_stderr_ready()\n                and not stdout.channel.recv_ready()\n            ):\n                stdout.channel.shutdown_read()\n                stdout.channel.close()\n                break\n\n        stdout.close()\n        stderr.close()\n\n        ret = stdout.channel.recv_exit_status()\n        if ret != 0:\n            err = b\"\".join(stderr_chunks).decode(\"utf-8\")\n            raise RemoteCmdError(\"ssh\", cmd, ret, err)\n\n        return b\"\".join(stdout_chunks).decode(\"utf-8\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.uname_SSHConnection.md5.return.md5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.uname_SSHConnection.md5.return.md5", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 281, "end_line": 306, "span_ids": ["SSHConnection.uname", "SSHConnection.md5"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n\n    @cached_property\n    def uname(self):\n        return self.execute(\"uname\").strip()\n\n    def md5(self, path):\n        \"\"\"\n        Use different md5 commands depending on the OS:\n\n         - Darwin's `md5` returns BSD-style checksums by default\n         - Linux's `md5sum` needs the `--tag` flag for a similar output\n\n         Example:\n              MD5 (foo.txt) = f3d220a856b52aabbf294351e8a24300\n        \"\"\"\n        path = shlex.quote(path)\n        if self.uname == \"Linux\":\n            md5 = self.execute(\"md5sum \" + path).split()[0]\n        elif self.uname == \"Darwin\":\n            md5 = self.execute(\"md5 \" + path).split()[-1]\n        else:\n            raise DvcException(\n                f\"'{self.uname}' is not supported as a SSH remote\"\n            )\n\n        assert len(md5) == 32\n        return md5", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.copy_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/ssh/connection.py_SSHConnection.copy_", "embedding": null, "metadata": {"file_path": "dvc/tree/ssh/connection.py", "file_name": "connection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 308, "end_line": 346, "span_ids": ["SSHConnection.symlink", "SSHConnection.reflink", "SSHConnection.copy", "SSHConnection.open", "SSHConnection.open_max_sftp_channels", "SSHConnection.hardlink"], "tokens": 311}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHConnection:\n\n    def copy(self, src, dest):\n        dest = shlex.quote(dest)\n        src = shlex.quote(src)\n        self.execute(f\"cp {src} {dest}\")\n\n    def open_max_sftp_channels(self):\n        # If there are more than 1 it means we've already opened max amount\n        if len(self._sftp_channels) <= 1:\n            while True:\n                try:\n                    self._sftp_channels.append(self._ssh.open_sftp())\n                except paramiko.ssh_exception.ChannelException:\n                    if not self._sftp_channels:\n                        raise\n                    break\n        return self._sftp_channels\n\n    def open(self, *args, **kwargs):\n        return self.sftp.open(*args, **kwargs)\n\n    def symlink(self, src, dest):\n        self.sftp.symlink(src, dest)\n\n    def reflink(self, src, dest):\n        dest = shlex.quote(dest)\n        src = shlex.quote(src)\n        if self.uname == \"Linux\":\n            return self.execute(f\"cp --reflink {src} {dest}\")\n\n        if self.uname == \"Darwin\":\n            return self.execute(f\"cp -c {src} {dest}\")\n\n        raise DvcException(f\"'{self.uname}' is not supported as a SSH remote\")\n\n    def hardlink(self, src, dest):\n        dest = shlex.quote(dest)\n        src = shlex.quote(src)\n        self.execute(f\"ln {src} {dest}\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_logging_WebDAVConnectionError.__init__.super___init___f_Unable": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_logging_WebDAVConnectionError.__init__.super___init___f_Unable", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["imports", "WebDAVConnectionError.__init__", "WebDAVConnectionError"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport threading\nfrom collections import deque\n\nfrom funcy import cached_property, nullcontext, wrap_prop\n\nfrom dvc.config import ConfigError\nfrom dvc.exceptions import DvcException\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import HTTPURLInfo, WebDAVURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\n\nfrom .base import BaseTree\nfrom .http import ask_password\n\nlogger = logging.getLogger(__name__)\n\n\nclass WebDAVConnectionError(DvcException):\n    def __init__(self, host):\n        super().__init__(f\"Unable to connect to WebDAV {host}.\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree_WebDAVTree._Webdav_client": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree_WebDAVTree._Webdav_client", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 26, "end_line": 84, "span_ids": ["WebDAVTree.__init__", "WebDAVTree"], "tokens": 420}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n    # Use webdav scheme\n    scheme = Schemes.WEBDAV\n\n    # URLInfo for Webdav ~ replaces webdav -> http\n    PATH_CLS = WebDAVURLInfo\n\n    # Traversable as walk_files is implemented\n    CAN_TRAVERSE = True\n\n    # Length of walk_files prefix\n    TRAVERSE_PREFIX_LEN = 2\n\n    # Implementation based on webdav3.client\n    REQUIRES = {\"webdavclient3\": \"webdav3.client\"}\n\n    # Chunk size for buffered upload/download with progress bar\n    CHUNK_SIZE = 2 ** 16\n\n    PARAM_CHECKSUM = \"etag\"\n\n    # Constructor\n    def __init__(self, repo, config):\n        # Call BaseTree constructor\n        super().__init__(repo, config)\n\n        # Get username from configuration\n        self.user = config.get(\"user\", None)\n\n        # Get password from configuration (might be None ~ not set)\n        self.password = config.get(\"password\", None)\n\n        # Whether to ask for password if it is not set\n        self.ask_password = config.get(\"ask_password\", False)\n\n        # Use token for webdav auth\n        self.token = config.get(\"token\", None)\n\n        # Path to certificate\n        self.cert_path = config.get(\"cert_path\", None)\n\n        # Path to private key\n        self.key_path = config.get(\"key_path\", None)\n\n        # Connection timeout\n        self.timeout = config.get(\"timeout\", 30)\n\n        # Get URL from configuration\n        self.url = config.get(\"url\", None)\n\n        # If URL in config parse path_info\n        if self.url:\n            self.path_info = self.PATH_CLS(self.url)\n\n            # If username not specified try to use from URL\n            if self.user is None and self.path_info.user is not None:\n                self.user = self.path_info.user\n\n    # Webdav client", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._client_WebDAVTree._client.return.client": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._client_WebDAVTree._client.return.client", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 91, "end_line": 129, "span_ids": ["WebDAVTree._client"], "tokens": 308}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def _client(self):\n        from webdav3.client import Client\n\n        # Construct hostname from path_info by stripping path\n        http_info = HTTPURLInfo(self.path_info.url)\n        hostname = http_info.replace(path=\"\").url\n\n        # Set password or ask for it\n        if self.ask_password and self.password is None and self.token is None:\n            host, user = self.path_info.host, self.path_info.user\n            self.password = ask_password(host, user)\n\n        # Setup webdav client options dictionary\n        options = {\n            \"webdav_hostname\": hostname,\n            \"webdav_login\": self.user,\n            \"webdav_password\": self.password,\n            \"webdav_token\": self.token,\n            \"webdav_cert_path\": self.cert_path,\n            \"webdav_key_path\": self.key_path,\n            \"webdav_timeout\": self.timeout,\n            \"webdav_chunk_size\": self.CHUNK_SIZE,\n        }\n\n        client = Client(options)\n\n        # Check whether client options are valid\n        if not client.valid():\n            raise ConfigError(\n                f\"Configuration for WebDAV {hostname} is invalid.\"\n            )\n\n        # Check whether connection is valid (root should always exist)\n        if not client.check(self.path_info.path):\n            raise WebDAVConnectionError(hostname)\n\n        return client", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._Checks_whether_file_dir_WebDAVTree._Yields_path_info_to_all": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._Checks_whether_file_dir_WebDAVTree._Yields_path_info_to_all", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 131, "end_line": 155, "span_ids": ["WebDAVTree.get_file_hash", "WebDAVTree.isdir", "WebDAVTree.exists", "WebDAVTree._client"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n\n    # Checks whether file/directory exists at remote\n    def exists(self, path_info, use_dvcignore=True):\n        # Use webdav check to test for file existence\n        return self._client.check(path_info.path)\n\n    # Gets file hash 'etag'\n    def get_file_hash(self, path_info):\n        # Use webdav client info method to get etag\n        etag = self._client.info(path_info.path)[\"etag\"].strip('\"')\n\n        # From HTTPTree\n        if not etag:\n            raise DvcException(\n                \"could not find an ETag or \"\n                \"Content-MD5 header for '{url}'\".format(url=path_info.url)\n            )\n\n        return HashInfo(self.PARAM_CHECKSUM, etag)\n\n    # Checks whether path points to directory\n    def isdir(self, path_info):\n        # Use webdav is_dir to test whether path points to a directory\n        return self._client.is_dir(path_info.path)\n\n    # Yields path info to all files", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree.walk_files_WebDAVTree.walk_files.while_dirs_.for_entry_in_self__client.if_entry_isdir_.else_.yield_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree.walk_files_WebDAVTree.walk_files.while_dirs_.for_entry_in_self__client.if_entry_isdir_.else_.yield_info", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 156, "end_line": 177, "span_ids": ["WebDAVTree.walk_files"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n    def walk_files(self, path_info, **kwargs):\n        # Check whether directory exists\n        if not self.exists(path_info):\n            return\n\n        # Collect directories\n        dirs = deque([path_info.path])\n\n        # Iterate all directories found so far\n        while dirs:\n            # Iterate directory content\n            for entry in self._client.list(dirs.pop(), get_info=True):\n                # Construct path_info to entry\n                info = path_info.replace(path=entry[\"path\"])\n\n                # Check whether entry is a directory\n                if entry[\"isdir\"]:\n                    # Append new found directory to directory list\n                    dirs.append(info.path)\n                else:\n                    # Yield path info to non directory\n                    yield info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._Removes_file_directory_WebDAVTree._Downloads_file_from_rem": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._Removes_file_directory_WebDAVTree._Downloads_file_from_rem", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 179, "end_line": 201, "span_ids": ["WebDAVTree.makedirs", "WebDAVTree.move", "WebDAVTree.walk_files", "WebDAVTree.remove"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n\n    # Removes file/directory\n    def remove(self, path_info):\n        # Use webdav client clean (DELETE) method to remove file/directory\n        self._client.clean(path_info.path)\n\n    # Creates directories\n    def makedirs(self, path_info):\n        # Terminate recursion\n        if path_info.path == self.path_info.path or self.exists(path_info):\n            return\n\n        # Recursively descent to root\n        self.makedirs(path_info.parent)\n\n        # Construct directory at current recursion depth\n        self._client.mkdir(path_info.path)\n\n    # Moves file/directory at remote\n    def move(self, from_info, to_info, mode=None):\n        # Webdav client move\n        self._client.move(from_info.path, to_info.path)\n\n    # Downloads file from remote to file", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._download_WebDAVTree._Uploads_file_to_remote": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._download_WebDAVTree._Uploads_file_to_remote", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 202, "end_line": 218, "span_ids": ["WebDAVTree._download"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n    def _download(self, from_info, to_file, name=None, no_progress_bar=False):\n        # Progress from HTTPTree\n        with open(to_file, \"wb\") as fd:\n            with Tqdm.wrapattr(\n                fd,\n                \"write\",\n                total=None if no_progress_bar else self._file_size(from_info),\n                leave=False,\n                desc=from_info.url if name is None else name,\n                disable=no_progress_bar,\n            ) as fd_wrapped:\n                # Download from WebDAV via buffer\n                self._client.download_from(\n                    buff=fd_wrapped, remote_path=from_info.path\n                )\n\n    # Uploads file to remote", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._upload_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdav.py_WebDAVTree._upload_", "embedding": null, "metadata": {"file_path": "dvc/tree/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 213, "end_line": 242, "span_ids": ["WebDAVTree._upload", "WebDAVTree._file_size"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebDAVTree(BaseTree):  # pylint:disable=abstract-method\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs,\n    ):\n        # First try to create parent directories\n        self.makedirs(to_info.parent)\n\n        file_size = os.path.getsize(from_file)\n        with open(from_file, \"rb\") as fd:\n            progress_context = (\n                nullcontext(fd)\n                if file_size == 0\n                else Tqdm.wrapattr(\n                    fd,\n                    \"read\",\n                    total=None if no_progress_bar else file_size,\n                    leave=False,\n                    desc=to_info.url if name is None else name,\n                    disable=no_progress_bar,\n                )\n            )\n            with progress_context as fd_wrapped:\n                self._client.upload_to(\n                    buff=fd_wrapped, remote_path=to_info.path\n                )\n\n    # Queries size of file at remote\n    def _file_size(self, path_info):\n        # Get file size from info dictionary and convert to int (from str)\n        return int(self._client.info(path_info.path)[\"size\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdavs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webdavs.py__", "embedding": null, "metadata": {"file_path": "dvc/tree/webdavs.py", "file_name": "webdavs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["WebDAVSTree", "imports"], "tokens": 47}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.scheme import Schemes\n\nfrom .webdav import WebDAVTree\n\n\nclass WebDAVSTree(WebDAVTree):  # pylint:disable=abstract-method\n    scheme = Schemes.WEBDAVS", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/collections.py_os_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/collections.py_os_", "embedding": null, "metadata": {"file_path": "dvc/utils/collections.py", "file_name": "collections.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 60, "span_ids": ["PathStringTrie", "imports", "PathStringTrie.__init__", "apply_diff"], "tokens": 409}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom collections.abc import Mapping\n\nfrom pygtrie import StringTrie as _StringTrie\n\n\nclass PathStringTrie(_StringTrie):\n    \"\"\"Trie based on platform-dependent separator for pathname components.\"\"\"\n\n    def __init__(self, *args, **kwargs):\n        kwargs[\"separator\"] = os.sep\n        super().__init__(*args, **kwargs)\n\n\ndef apply_diff(src, dest):\n    \"\"\"Recursively apply changes from src to dest.\n\n    Preserves dest type and hidden info in dest structure,\n    like ruamel.yaml leaves when parses files. This includes comments,\n    ordering and line foldings.\n\n    Used in Stage load/dump cycle to preserve comments and custom formatting.\n    \"\"\"\n    Seq = (list, tuple)\n    Container = (Mapping, list, tuple)\n\n    def is_same_type(a, b):\n        return any(\n            isinstance(a, t) and isinstance(b, t)\n            for t in [str, Mapping, Seq, bool]\n        )\n\n    if isinstance(src, Mapping) and isinstance(dest, Mapping):\n        for key, value in src.items():\n            if isinstance(value, Container) and is_same_type(\n                value, dest.get(key)\n            ):\n                apply_diff(value, dest[key])\n            elif key not in dest or value != dest[key]:\n                dest[key] = value\n        for key in set(dest) - set(src):\n            del dest[key]\n    elif isinstance(src, Seq) and isinstance(dest, Seq):\n        if len(src) != len(dest):\n            dest[:] = src\n        else:\n            for i, value in enumerate(src):\n                if isinstance(value, Container) and is_same_type(\n                    value, dest[i]\n                ):\n                    apply_diff(value, dest[i])\n                elif value != dest[i]:\n                    dest[i] = value\n    else:\n        raise AssertionError(\n            \"Can't apply diff from {} to {}\".format(\n                src.__class__.__name__, dest.__class__.__name__\n            )\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/flatten.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/flatten.py__", "embedding": null, "metadata": {"file_path": "dvc/utils/flatten.py", "file_name": "flatten.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 10, "span_ids": ["imports", "unflatten", "flatten"], "tokens": 36}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import flatten_dict\n\n\ndef flatten(d):\n    return flatten_dict.flatten(d, reducer=\"dot\")\n\n\ndef unflatten(d):\n    return flatten_dict.unflatten(d, splitter=\"dot\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/pager.py__Draws_DAG_in_ASCII__make_pager.return._pager": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/pager.py__Draws_DAG_in_ASCII__make_pager.return._pager", "embedding": null, "metadata": {"file_path": "dvc/utils/pager.py", "file_name": "pager.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["make_pager", "docstring"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Draws DAG in ASCII.\"\"\"\n\nimport logging\nimport os\nimport pydoc\nimport sys\n\nfrom dvc.env import DVC_PAGER\nfrom dvc.utils import format_link\n\nlogger = logging.getLogger(__name__)\n\n\nDEFAULT_PAGER = \"less\"\nDEFAULT_PAGER_FORMATTED = (\n    f\"{DEFAULT_PAGER} --chop-long-lines --clear-screen --RAW-CONTROL-CHARS\"\n)\n\n\ndef make_pager(cmd):\n    def _pager(text):\n        return pydoc.tempfilepager(pydoc.plain(text), cmd)\n\n    return _pager", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/pager.py_find_pager_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/pager.py_find_pager_", "embedding": null, "metadata": {"file_path": "dvc/utils/pager.py", "file_name": "pager.py", "file_type": "text/x-python", "category": "implementation", "start_line": 27, "end_line": 49, "span_ids": ["find_pager", "pager"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def find_pager():\n    if not sys.stdout.isatty():\n        return pydoc.plainpager\n\n    env_pager = os.getenv(DVC_PAGER)\n    if env_pager:\n        return make_pager(env_pager)\n\n    if os.system(f\"({DEFAULT_PAGER}) 2>{os.devnull}\") == 0:\n        return make_pager(DEFAULT_PAGER_FORMATTED)\n\n    logger.warning(\n        \"Unable to find `less` in the PATH. Check out \"\n        \"{} for more info.\".format(\n            format_link(\"https://man.dvc.org/pipeline/show\")\n        )\n    )\n    return pydoc.plainpager\n\n\ndef pager(text):\n    find_pager()(text)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/__init__.py_from_collections_import_d_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/__init__.py_from_collections_import_d_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 27, "span_ids": ["imports"], "tokens": 254}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import defaultdict\nfrom typing import DefaultDict\n\nfrom ._common import *  # noqa, pylint: disable=wildcard-import\nfrom ._json import *  # noqa, pylint: disable=wildcard-import\nfrom ._py import *  # noqa, pylint: disable=wildcard-import\nfrom ._toml import *  # noqa, pylint: disable=wildcard-import\nfrom ._yaml import *  # noqa, pylint: disable=wildcard-import\n\nLOADERS: DefaultDict[str, LoaderFn] = defaultdict(  # noqa: F405\n    lambda: load_yaml  # noqa: F405\n)\nLOADERS.update(\n    {\".toml\": load_toml, \".json\": load_json, \".py\": load_py}  # noqa: F405\n)\n\nMODIFIERS: DefaultDict[str, ModifierFn] = defaultdict(  # noqa: F405\n    lambda: modify_yaml  # noqa: F405\n)\nMODIFIERS.update(\n    {\n        \".toml\": modify_toml,  # noqa: F405\n        \".json\": modify_json,  # noqa: F405\n        \".py\": modify_py,  # noqa: F405\n    }\n)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_common.py__Common_utilities_for_s_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_common.py__Common_utilities_for_s_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_common.py", "file_name": "_common.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 71, "span_ids": ["DumperFn.__call__", "LoaderFn", "ParseError.__init__", "ModifierFn", "DumperFn", "impl:2", "_load_data", "_modify_data", "_dump_data", "LoaderFn.__call__", "ModifierFn.__call__", "docstring", "ParseError"], "tokens": 514}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Common utilities for serialize.\"\"\"\nimport os\nfrom contextlib import contextmanager\nfrom typing import TYPE_CHECKING, Any, Callable, ContextManager, Dict, Union\n\nfrom typing_extensions import Protocol\n\nfrom dvc.exceptions import DvcException\nfrom dvc.utils import relpath\n\nif TYPE_CHECKING:\n    from dvc.tree.base import BaseTree\n    from dvc.types import AnyPath\n\n\nclass DumperFn(Protocol):\n    def __call__(\n        self, path: \"AnyPath\", data: Any, tree: \"BaseTree\" = None\n    ) -> Any:\n        ...\n\n\nclass ModifierFn(Protocol):\n    def __call__(\n        self, path: \"AnyPath\", tree: \"BaseTree\" = None\n    ) -> ContextManager[Dict]:\n        ...\n\n\nclass LoaderFn(Protocol):\n    def __call__(self, path: \"AnyPath\", tree: \"BaseTree\" = None) -> Any:\n        ...\n\n\nReadType = Union[bytes, None, str]\nParserFn = Callable[[ReadType, \"AnyPath\"], dict]\n\n\nclass ParseError(DvcException):\n    \"\"\"Errors while parsing files\"\"\"\n\n    def __init__(self, path: \"AnyPath\", message: str):\n        path = relpath(path)\n        super().__init__(f\"unable to read: '{path}', {message}\")\n\n\ndef _load_data(path: \"AnyPath\", parser: ParserFn, tree: \"BaseTree\" = None):\n    open_fn = tree.open if tree else open\n    with open_fn(path, encoding=\"utf-8\") as fd:  # type: ignore\n        return parser(fd.read(), path)\n\n\ndef _dump_data(path, data: Any, dumper: DumperFn, tree: \"BaseTree\" = None):\n    open_fn = tree.open if tree else open\n    with open_fn(path, \"w+\", encoding=\"utf-8\") as fd:  # type: ignore\n        dumper(data, fd)\n\n\n@contextmanager\ndef _modify_data(\n    path: \"AnyPath\",\n    parser: ParserFn,\n    dumper: DumperFn,\n    tree: \"BaseTree\" = None,\n):\n    exists_fn = tree.exists if tree else os.path.exists\n    file_exists = exists_fn(path)  # type: ignore\n    data = _load_data(path, parser=parser, tree=tree) if file_exists else {}\n    yield data\n    dumper(path, data, tree=tree)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_json.py_json_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_json.py_json_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_json.py", "file_name": "_json.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 30, "span_ids": ["parse_json", "imports", "modify_json", "load_json", "dump_json", "JSONFileCorruptedError", "JSONFileCorruptedError.__init__"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\n\nfrom funcy import contextmanager, reraise\n\nfrom ._common import ParseError, _dump_data, _load_data, _modify_data\n\n\nclass JSONFileCorruptedError(ParseError):\n    def __init__(self, path):\n        super().__init__(path, \"JSON file structure is corrupted\")\n\n\ndef load_json(path, tree=None):\n    return _load_data(path, parser=parse_json, tree=tree)\n\n\ndef parse_json(text, path, **kwargs):\n    with reraise(json.JSONDecodeError, JSONFileCorruptedError(path)):\n        return json.loads(text, **kwargs) or {}\n\n\ndef dump_json(path, data, tree=None):\n    return _dump_data(path, data, dumper=json.dump, tree=tree)\n\n\n@contextmanager\ndef modify_json(path, tree=None):\n    with _modify_data(path, parse_json, dump_json, tree=tree) as d:\n        yield d", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py_ast_parse_py_for_update.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py_ast_parse_py_for_update.return.result", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_py.py", "file_name": "_py.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 38, "span_ids": ["load_py", "parse_py_for_update", "imports", "PythonFileCorruptedError", "parse_py", "PythonFileCorruptedError.__init__"], "tokens": 267}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import ast\nfrom contextlib import contextmanager\n\nfrom funcy import reraise\n\nfrom ._common import ParseError, _dump_data, _load_data, _modify_data\n\n_PARAMS_KEY = \"__params_old_key_for_update__\"\n_PARAMS_TEXT_KEY = \"__params_text_key_for_update__\"\n\n\nclass PythonFileCorruptedError(ParseError):\n    def __init__(self, path, message=\"Python file structure is corrupted\"):\n        super().__init__(path, message)\n\n\ndef load_py(path, tree=None):\n    return _load_data(path, parser=parse_py, tree=tree)\n\n\ndef parse_py(text, path):\n    \"\"\"Parses text from .py file into Python structure.\"\"\"\n    with reraise(SyntaxError, PythonFileCorruptedError(path)):\n        tree = ast.parse(text, filename=path)\n\n    result = _ast_tree_to_dict(tree)\n    return result\n\n\ndef parse_py_for_update(text, path):\n    \"\"\"Parses text into dict for update params.\"\"\"\n    with reraise(SyntaxError, PythonFileCorruptedError(path)):\n        tree = ast.parse(text, filename=path)\n\n    result = _ast_tree_to_dict(tree)\n    result.update({_PARAMS_KEY: _ast_tree_to_dict(tree, lineno=True)})\n    result.update({_PARAMS_TEXT_KEY: text})\n    return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py__dump__dump.stream_close_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py__dump__dump.stream_close_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_py.py", "file_name": "_py.py", "file_type": "text/x-python", "category": "implementation", "start_line": 41, "end_line": 76, "span_ids": ["_dump"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _dump(data, stream):\n\n    old_params = data[_PARAMS_KEY]\n    new_params = {\n        key: value\n        for key, value in data.items()\n        if key not in [_PARAMS_KEY, _PARAMS_TEXT_KEY]\n    }\n    old_lines = data[_PARAMS_TEXT_KEY].splitlines(True)\n\n    def _update_lines(lines, old_dct, new_dct):\n        for key, value in new_dct.items():\n            if isinstance(value, dict):\n                lines = _update_lines(lines, old_dct[key], value)\n            elif value != old_dct[key][\"value\"]:\n                lineno = old_dct[key][\"lineno\"]\n                lines[lineno] = lines[lineno].replace(\n                    f\" = {old_dct[key]['value']}\", f\" = {value}\"\n                )\n            else:\n                continue\n        return lines\n\n    new_lines = _update_lines(old_lines, old_params, new_params)\n    new_text = \"\".join(new_lines)\n\n    try:\n        ast.parse(new_text)\n    except SyntaxError:\n        raise PythonFileCorruptedError(\n            stream.name,\n            \"Python file structure is corrupted after update params\",\n        )\n\n    stream.write(new_text)\n    stream.close()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py_dump_py__ast_tree_to_dict.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py_dump_py__ast_tree_to_dict.return.result", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_py.py", "file_name": "_py.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 120, "span_ids": ["dump_py", "modify_py", "_ast_tree_to_dict"], "tokens": 290}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def dump_py(path, data, tree=None):\n    return _dump_data(path, data, dumper=_dump, tree=tree)\n\n\n@contextmanager\ndef modify_py(path, tree=None):\n    with _modify_data(path, parse_py_for_update, dump_py, tree=tree) as d:\n        yield d\n\n\ndef _ast_tree_to_dict(tree, only_self_params=False, lineno=False):\n    \"\"\"Parses ast trees to dict.\n\n    :param tree: ast.Tree\n    :param only_self_params: get only self params from class __init__ function\n    :param lineno: add params line number (needed for update)\n    :return:\n    \"\"\"\n    result = {}\n    for _body in tree.body:\n        try:\n            if isinstance(_body, (ast.Assign, ast.AnnAssign)):\n                result.update(\n                    _ast_assign_to_dict(_body, only_self_params, lineno)\n                )\n            elif isinstance(_body, ast.ClassDef):\n                result.update(\n                    {_body.name: _ast_tree_to_dict(_body, lineno=lineno)}\n                )\n            elif (\n                isinstance(_body, ast.FunctionDef) and _body.name == \"__init__\"\n            ):\n                result.update(\n                    _ast_tree_to_dict(\n                        _body, only_self_params=True, lineno=lineno\n                    )\n                )\n        except ValueError:\n            continue\n        except AttributeError:\n            continue\n    return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py__ast_assign_to_dict__ast_assign_to_dict.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py__ast_assign_to_dict__ast_assign_to_dict.return.result", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_py.py", "file_name": "_py.py", "file_type": "text/x-python", "category": "implementation", "start_line": 123, "end_line": 159, "span_ids": ["_ast_assign_to_dict"], "tokens": 309}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _ast_assign_to_dict(assign, only_self_params=False, lineno=False):\n    result = {}\n\n    if isinstance(assign, ast.AnnAssign):\n        name = _get_ast_name(assign.target, only_self_params)\n    elif len(assign.targets) == 1:\n        name = _get_ast_name(assign.targets[0], only_self_params)\n    else:\n        raise AttributeError\n\n    if isinstance(assign.value, ast.Dict):\n        value = {}\n        for key, val in zip(assign.value.keys, assign.value.values):\n            if lineno:\n                value[_get_ast_value(key)] = {\n                    \"lineno\": assign.lineno - 1,\n                    \"value\": _get_ast_value(val),\n                }\n            else:\n                value[_get_ast_value(key)] = _get_ast_value(val)\n    elif isinstance(assign.value, ast.List):\n        value = [_get_ast_value(val) for val in assign.value.elts]\n    elif isinstance(assign.value, ast.Set):\n        values = [_get_ast_value(val) for val in assign.value.elts]\n        value = set(values)\n    elif isinstance(assign.value, ast.Tuple):\n        values = [_get_ast_value(val) for val in assign.value.elts]\n        value = tuple(values)\n    else:\n        value = _get_ast_value(assign.value)\n\n    if lineno and not isinstance(assign.value, ast.Dict):\n        result[name] = {\"lineno\": assign.lineno - 1, \"value\": value}\n    else:\n        result[name] = value\n\n    return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py__get_ast_name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_py.py__get_ast_name_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_py.py", "file_name": "_py.py", "file_type": "text/x-python", "category": "implementation", "start_line": 162, "end_line": 182, "span_ids": ["_get_ast_name", "_get_ast_value"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_ast_name(target, only_self_params=False):\n    if hasattr(target, \"id\") and not only_self_params:\n        result = target.id\n    elif hasattr(target, \"attr\") and target.value.id == \"self\":\n        result = target.attr\n    else:\n        raise AttributeError\n    return result\n\n\ndef _get_ast_value(value):\n    if isinstance(value, ast.Num):\n        result = value.n\n    elif isinstance(value, ast.Str):\n        result = value.s\n    elif isinstance(value, ast.NameConstant):\n        result = value.value\n    else:\n        raise ValueError\n    return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_toml.py_from_contextlib_import_co_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_toml.py_from_contextlib_import_co_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_toml.py", "file_name": "_toml.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 46, "span_ids": ["load_toml", "modify_toml", "_dump", "TOMLFileCorruptedError", "imports", "TOMLFileCorruptedError.__init__", "parse_toml_for_update", "parse_toml", "dump_toml"], "tokens": 336}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from contextlib import contextmanager\n\nimport toml\nfrom funcy import reraise\n\nfrom ._common import ParseError, _dump_data, _load_data, _modify_data\n\n\nclass TOMLFileCorruptedError(ParseError):\n    def __init__(self, path):\n        super().__init__(path, \"TOML file structure is corrupted\")\n\n\ndef load_toml(path, tree=None):\n    return _load_data(path, parser=parse_toml, tree=tree)\n\n\ndef parse_toml(text, path, decoder=None):\n    with reraise(toml.TomlDecodeError, TOMLFileCorruptedError(path)):\n        return toml.loads(text, decoder=decoder)\n\n\ndef parse_toml_for_update(text, path):\n    \"\"\"Parses text into Python structure.\n\n    NOTE: Python toml package does not currently use ordered dicts, so\n    keys may be re-ordered between load/dump, but this function will at\n    least preserve comments.\n    \"\"\"\n    decoder = toml.TomlPreserveCommentDecoder()\n    return parse_toml(text, path, decoder=decoder)\n\n\ndef _dump(data, stream):\n    return toml.dump(data, stream, encoder=toml.TomlPreserveCommentEncoder())\n\n\ndef dump_toml(path, data, tree=None):\n    return _dump_data(path, data, dumper=_dump, tree=tree)\n\n\n@contextmanager\ndef modify_toml(path, tree=None):\n    with _modify_data(path, parse_toml_for_update, dump_toml, tree=tree) as d:\n        yield d", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_yaml.py_io_load_yaml.return._load_data_path_parser_p": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_yaml.py_io_load_yaml.return._load_data_path_parser_p", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_yaml.py", "file_name": "_yaml.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["YAMLError", "YAMLFileCorruptedError", "YAMLFileCorruptedError.__init__", "imports", "load_yaml"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\nfrom collections import OrderedDict\nfrom contextlib import contextmanager\n\nfrom funcy import reraise\nfrom ruamel.yaml import YAML\nfrom ruamel.yaml.constructor import DuplicateKeyError\nfrom ruamel.yaml.error import YAMLError as _YAMLError\n\nfrom ._common import ParseError, _dump_data, _load_data, _modify_data\n\n\nclass YAMLError(ParseError):\n    pass\n\n\nclass YAMLFileCorruptedError(YAMLError):\n    def __init__(self, path):\n        super().__init__(path, \"YAML file structure is corrupted\")\n\n\ndef load_yaml(path, tree=None):\n    return _load_data(path, parser=parse_yaml, tree=tree)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_yaml.py_parse_yaml_parse_yaml.try_.except_DuplicateKeyError_.raise_YAMLError_path_exc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_yaml.py_parse_yaml_parse_yaml.try_.except_DuplicateKeyError_.raise_YAMLError_path_exc", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_yaml.py", "file_name": "_yaml.py", "file_type": "text/x-python", "category": "implementation", "start_line": 26, "end_line": 35, "span_ids": ["parse_yaml"], "tokens": 111}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def parse_yaml(text, path, typ=\"safe\"):\n    yaml = YAML(typ=typ)\n    try:\n        with reraise(_YAMLError, YAMLFileCorruptedError(path)):\n            return yaml.load(text) or {}\n    except DuplicateKeyError as exc:\n        # NOTE: unfortunately this one doesn't inherit from YAMLError, so we\n        # have to catch it by-hand. See\n        # https://yaml.readthedocs.io/en/latest/api.html#duplicate-keys\n        raise YAMLError(path, exc.problem)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_yaml.py_parse_yaml_for_update_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/serialize/_yaml.py_parse_yaml_for_update_", "embedding": null, "metadata": {"file_path": "dvc/utils/serialize/_yaml.py", "file_name": "_yaml.py", "file_type": "text/x-python", "category": "implementation", "start_line": 38, "end_line": 83, "span_ids": ["modify_yaml", "_get_yaml", "_dump", "parse_yaml_for_update", "dump_yaml", "dumps_yaml", "loads_yaml"], "tokens": 280}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def parse_yaml_for_update(text, path):\n    \"\"\"Parses text into Python structure.\n\n    Unlike `parse_yaml()` this returns ordered dicts, values have special\n    attributes to store comments and line breaks. This allows us to preserve\n    all of those upon dump.\n\n    This one is, however, several times slower than simple `parse_yaml()`.\n    \"\"\"\n    return parse_yaml(text, path, typ=\"rt\")\n\n\ndef _get_yaml():\n    yaml = YAML()\n    yaml.default_flow_style = False\n\n    # tell Dumper to represent OrderedDict as normal dict\n    yaml_repr_cls = yaml.Representer\n    yaml_repr_cls.add_representer(OrderedDict, yaml_repr_cls.represent_dict)\n    return yaml\n\n\ndef _dump(data, stream):\n    yaml = _get_yaml()\n    return yaml.dump(data, stream)\n\n\ndef dump_yaml(path, data, tree=None):\n    return _dump_data(path, data, dumper=_dump, tree=tree)\n\n\ndef loads_yaml(s, typ=\"safe\"):\n    return YAML(typ=typ).load(s)\n\n\ndef dumps_yaml(d):\n    stream = io.StringIO()\n    _dump(d, stream)\n    return stream.getvalue()\n\n\n@contextmanager\ndef modify_yaml(path, tree=None):\n    with _modify_data(path, parse_yaml_for_update, dump_yaml, tree=tree) as d:\n        yield d", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-dvc.py", "file_name": "hook-dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 3, "span_ids": ["docstring"], "tokens": 25}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# https://github.com/pypa/setuptools/issues/1963\nhiddenimports = [\"pkg_resources.py2_warn\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.tree.gs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.tree.gs.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-dvc.tree.gs.py", "file_name": "hook-dvc.tree.gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 12, "span_ids": ["imports"], "tokens": 85}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from PyInstaller.utils.hooks import (  # pylint:disable=import-error\n    copy_metadata,\n)\n\ndatas = copy_metadata(\"google-cloud-storage\")\n\n# NOTE: including \"requests\" metadata because of google-resumable-media\n# bug. See [1] for more info.\n#\n# [1] https://github.com/googleapis/google-resumable-media-python/issues/59\ndatas += copy_metadata(\"requests\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.utils.flatten.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/scripts/hooks/hook-dvc.utils.flatten.py__", "embedding": null, "metadata": {"file_path": "scripts/hooks/hook-dvc.utils.flatten.py", "file_name": "hook-dvc.utils.flatten.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 6, "span_ids": ["imports"], "tokens": 30}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from PyInstaller.utils.hooks import (  # pylint:disable=import-error\n    copy_metadata,\n)\n\ndatas = copy_metadata(\"flatten-dict\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_experiment_test_show_experiment.for_rev_exp_in_experimen.if_rev_baseline_.else_.assert_exp_params_par": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_experiment_test_show_experiment.for_rev_exp_in_experimen.if_rev_baseline_.else_.assert_exp_params_par", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 22, "end_line": 51, "span_ids": ["test_show_experiment"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_show_experiment(tmp_dir, scm, dvc, exp_stage, workspace):\n    baseline_rev = scm.get_rev()\n    timestamp = datetime.fromtimestamp(\n        scm.gitpython.repo.rev_parse(baseline_rev).committed_date\n    )\n\n    dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    results = dvc.experiments.show()\n\n    expected_baseline = {\n        \"metrics\": {\"metrics.yaml\": {\"foo\": 1}},\n        \"params\": {\"params.yaml\": {\"foo\": 1}},\n        \"queued\": False,\n        \"timestamp\": timestamp,\n        \"name\": \"master\",\n    }\n    expected_params = {\"foo\": 2}\n\n    assert set(results.keys()) == {\"workspace\", baseline_rev}\n    experiments = results[baseline_rev]\n    assert len(experiments) == 2\n    for rev, exp in experiments.items():\n        if rev == \"baseline\":\n            assert exp == expected_baseline\n        else:\n            assert exp[\"metrics\"][\"metrics.yaml\"] == expected_params\n            assert exp[\"params\"][\"params.yaml\"] == expected_params", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_pytest_test_show_toml.assert_dvc_params_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_pytest_test_show_toml.assert_dvc_params_show_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["imports", "test_show_empty", "test_show_toml", "test_show"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.repo import Repo\nfrom dvc.repo.params.show import NoParamsError\n\n\ndef test_show_empty(dvc):\n    with pytest.raises(NoParamsError):\n        dvc.params.show()\n\n\ndef test_show(tmp_dir, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    assert dvc.params.show() == {\"\": {\"params.yaml\": {\"foo\": \"bar\"}}}\n\n\ndef test_show_toml(tmp_dir, dvc):\n    tmp_dir.gen(\"params.toml\", \"[foo]\\nbar = 42\\nbaz = [1, 2]\\n\")\n    dvc.run(\n        cmd=\"echo params.toml\", params=[\"params.toml:foo\"], single_stage=True\n    )\n    assert dvc.params.show() == {\n        \"\": {\"params.toml\": {\"foo\": {\"bar\": 42, \"baz\": [1, 2]}}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_show_py_test_show_py.assert_dvc_params_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_show_py_test_show_py.assert_dvc_params_show_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 39, "span_ids": ["test_show_py"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_py(tmp_dir, dvc):\n    tmp_dir.gen(\n        \"params.py\",\n        \"CONST = 1\\nIS_DIR: bool = True\\n\\n\\nclass Config:\\n    foo = 42\\n\",\n    )\n    dvc.run(\n        cmd=\"echo params.py\",\n        params=[\"params.py:CONST,IS_DIR,Config.foo\"],\n        single_stage=True,\n    )\n    assert dvc.params.show() == {\n        \"\": {\"params.py\": {\"CONST\": 1, \"IS_DIR\": True, \"Config\": {\"foo\": 42}}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_show_multiple_test_show_list.assert_dvc_params_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_show_multiple_test_show_list.assert_dvc_params_show_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 64, "span_ids": ["test_show_list", "test_show_multiple"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_multiple(tmp_dir, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\\nbaz: qux\\n\")\n    dvc.run(\n        cmd=\"echo params.yaml\",\n        fname=\"foo.dvc\",\n        params=[\"foo\"],\n        single_stage=True,\n    )\n    dvc.run(\n        cmd=\"echo params.yaml\",\n        fname=\"baz.dvc\",\n        params=[\"baz\"],\n        single_stage=True,\n    )\n    assert dvc.params.show() == {\n        \"\": {\"params.yaml\": {\"foo\": \"bar\", \"baz\": \"qux\"}}\n    }\n\n\ndef test_show_list(tmp_dir, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo:\\n- bar\\n- baz\\n\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    assert dvc.params.show() == {\"\": {\"params.yaml\": {\"foo\": [\"bar\", \"baz\"]}}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_show_branch_test_show_branch.assert_dvc_params_show_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_show.py_test_show_branch_test_show_branch.assert_dvc_params_show_re", "embedding": null, "metadata": {"file_path": "tests/func/params/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 67, "end_line": 79, "span_ids": ["test_show_branch"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_branch(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"init\")\n\n    with tmp_dir.branch(\"branch\", new=True):\n        tmp_dir.scm_gen(\"params.yaml\", \"foo: baz\", commit=\"branch\")\n\n    assert dvc.params.show(revs=[\"branch\"]) == {\n        \"workspace\": {\"params.yaml\": {\"foo\": \"bar\"}},\n        \"branch\": {\"params.yaml\": {\"foo\": \"baz\"}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_indexed_on_status_test_indexed_on_status.None_1.assert_foo_hash_info_valu": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_indexed_on_status_test_indexed_on_status.None_1.assert_foo_hash_info_valu", "embedding": null, "metadata": {"file_path": "tests/func/remote/test_index.py", "file_name": "test_index.py", "file_type": "text/x-python", "category": "test", "start_line": 32, "end_line": 46, "span_ids": ["test_indexed_on_status"], "tokens": 158}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_indexed_on_status(tmp_dir, dvc, tmp_path_factory, remote):\n    foo = tmp_dir.dvc_gen({\"foo\": \"foo content\"})[0].outs[0]\n    bar = tmp_dir.dvc_gen({\"bar\": {\"baz\": \"baz content\"}})[0].outs[0]\n    baz_hash = bar.dir_cache.trie.get((\"baz\",))\n    dvc.push()\n    with remote.index:\n        remote.index.clear()\n\n    dvc.status(cloud=True)\n    with remote.index:\n        assert {bar.hash_info.value, baz_hash.value} == set(\n            remote.index.hashes()\n        )\n        assert [bar.hash_info.value] == list(remote.index.dir_hashes())\n        assert foo.hash_info.value not in remote.index.hashes()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_indexed_on_push_test_indexed_on_push.with_remote_index_.assert_foo_hash_info_valu": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/remote/test_index.py_test_indexed_on_push_test_indexed_on_push.with_remote_index_.assert_foo_hash_info_valu", "embedding": null, "metadata": {"file_path": "tests/func/remote/test_index.py", "file_name": "test_index.py", "file_type": "text/x-python", "category": "test", "start_line": 49, "end_line": 60, "span_ids": ["test_indexed_on_push"], "tokens": 140}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_indexed_on_push(tmp_dir, dvc, tmp_path_factory, remote):\n    foo = tmp_dir.dvc_gen({\"foo\": \"foo content\"})[0].outs[0]\n    bar = tmp_dir.dvc_gen({\"bar\": {\"baz\": \"baz content\"}})[0].outs[0]\n    baz_hash = bar.dir_cache.trie.get((\"baz\",))\n\n    dvc.push()\n    with remote.index:\n        assert {bar.hash_info.value, baz_hash.value} == set(\n            remote.index.hashes()\n        )\n        assert [bar.hash_info.value] == list(remote.index.dir_hashes())\n        assert foo.hash_info.value not in remote.index.hashes()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_output_duplication_for_pipeline_tracked_test_add_pipeline_file.with_pytest_raises_Output.dvc_add_PIPELINE_FILE_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_output_duplication_for_pipeline_tracked_test_add_pipeline_file.with_pytest_raises_Output.dvc_add_PIPELINE_FILE_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 795, "end_line": 809, "span_ids": ["test_add_pipeline_file", "test_output_duplication_for_pipeline_tracked"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_output_duplication_for_pipeline_tracked(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    with pytest.raises(OutputDuplicationError):\n        dvc.add(\"bar\")\n\n\ndef test_add_pipeline_file(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    with pytest.raises(OutputIsStageFileError):\n        dvc.add(PIPELINE_FILE)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_open_scm_controlled_test_open_not_cached.with_pytest_raises_FileMi.api_read_metric_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_open_scm_controlled_test_open_not_cached.with_pytest_raises_FileMi.api_read_metric_file_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 153, "end_line": 177, "span_ids": ["test_open_not_cached", "test_open_scm_controlled"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_open_scm_controlled(tmp_dir, erepo_dir):\n    erepo_dir.scm_gen({\"scm_controlled\": \"file content\"}, commit=\"create file\")\n\n    with api.open(\"scm_controlled\", repo=os.fspath(erepo_dir)) as fd:\n        assert fd.read() == \"file content\"\n\n\ndef test_open_not_cached(dvc):\n    metric_file = \"metric.txt\"\n    metric_content = \"0.6\"\n    metric_code = \"open('{}', 'w').write('{}')\".format(\n        metric_file, metric_content\n    )\n    dvc.run(\n        single_stage=True,\n        metrics_no_cache=[metric_file],\n        cmd=(f'python -c \"{metric_code}\"'),\n    )\n\n    with api.open(metric_file) as fd:\n        assert fd.read() == metric_content\n\n    os.remove(metric_file)\n    with pytest.raises(FileMissingError):\n        api.read(metric_file)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_api_missing_local_cache_exists_on_remote_test_api_missing_local_cache_exists_on_remote.assert_api_read_to_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_api_missing_local_cache_exists_on_remote_test_api_missing_local_cache_exists_on_remote.assert_api_read_to_read_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 180, "end_line": 202, "span_ids": ["test_api_missing_local_cache_exists_on_remote"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"as_external\", [True, False])\n@pytest.mark.parametrize(\"remote\", [pytest.lazy_fixture(\"ssh\")], indirect=True)\n@pytest.mark.parametrize(\n    \"files, to_read\",\n    [\n        ({\"foo\": \"foo\"}, \"foo\"),\n        ({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}}, os.path.join(\"dir\", \"foo\")),\n    ],\n    ids=[\"file\", \"inside-dir\"],\n)\ndef test_api_missing_local_cache_exists_on_remote(\n    tmp_dir, scm, dvc, as_external, remote, files, to_read,\n):\n    tmp_dir.dvc_gen(files, commit=\"DVC track files\")\n    dvc.push()\n\n    # Remove cache to make foo missing\n    remove(dvc.cache.local.cache_dir)\n    remove(first(files))\n\n    repo_url = f\"file://{tmp_dir}\" if as_external else None\n    file_content = get_in(files, to_read.split(os.sep))\n    assert api.read(to_read, repo=repo_url) == file_content", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_read_with_subrepos_test_read_with_subrepos.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_read_with_subrepos_test_read_with_subrepos.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 205, "end_line": 231, "span_ids": ["test_read_with_subrepos"], "tokens": 300}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"local_repo\", [False, True])\ndef test_read_with_subrepos(tmp_dir, scm, local_cloud, local_repo):\n    tmp_dir.scm_gen(\"foo.txt\", \"foo.txt\", commit=\"add foo.txt\")\n    subrepo = tmp_dir / \"dir\" / \"subrepo\"\n    make_subrepo(subrepo, scm, config=local_cloud.config)\n    with subrepo.chdir():\n        subrepo.scm_gen({\"lorem\": \"lorem\"}, commit=\"add lorem\")\n        subrepo.dvc_gen({\"dir\": {\"file.txt\": \"file.txt\"}}, commit=\"add dir\")\n        subrepo.dvc_gen(\"dvc-file\", \"dvc-file\", commit=\"add dir\")\n        subrepo.dvc.push()\n\n    repo_path = None if local_repo else f\"file:///{tmp_dir}\"\n    subrepo_path = os.path.join(\"dir\", \"subrepo\")\n\n    assert api.read(\"foo.txt\", repo=repo_path) == \"foo.txt\"\n    assert (\n        api.read(os.path.join(subrepo_path, \"lorem\"), repo=repo_path)\n        == \"lorem\"\n    )\n    assert (\n        api.read(os.path.join(subrepo_path, \"dvc-file\"), repo=repo_path)\n        == \"dvc-file\"\n    )\n    assert (\n        api.read(os.path.join(subrepo_path, \"dir\", \"file.txt\"), repo=repo_path)\n        == \"file.txt\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_granular_test_get_url_granular.assert_api_get_url_os_pat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_granular_test_get_url_granular.assert_api_get_url_os_pat", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 234, "end_line": 250, "span_ids": ["test_get_url_granular"], "tokens": 248}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_url_granular(tmp_dir, dvc, s3):\n    tmp_dir.add_remote(config=s3.config)\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\", \"nested\": {\"file\": \"file\"}}}\n    )\n\n    expected_url = URLInfo(s3.url) / \"5f/c28ea78987408341668eba6525ebd1.dir\"\n    assert api.get_url(\"dir\") == expected_url\n\n    expected_url = URLInfo(s3.url) / \"ac/bd18db4cc2f85cedef654fccc4a4d8\"\n    assert api.get_url(\"dir/foo\") == expected_url\n\n    expected_url = URLInfo(s3.url) / \"37/b51d194a7513e45b56f6524f2d51f2\"\n    assert api.get_url(\"dir/bar\") == expected_url\n\n    expected_url = URLInfo(s3.url) / \"8c/7dd922ad47494fc02c388e12c00eac\"\n    assert api.get_url(os.path.join(\"dir\", \"nested\", \"file\")) == expected_url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_subrepos_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_api.py_test_get_url_subrepos_", "embedding": null, "metadata": {"file_path": "tests/func/test_api.py", "file_name": "test_api.py", "file_type": "text/x-python", "category": "test", "start_line": 253, "end_line": 269, "span_ids": ["test_get_url_subrepos"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_url_subrepos(tmp_dir, scm, local_cloud):\n    subrepo = tmp_dir / \"subrepo\"\n    make_subrepo(subrepo, scm, config=local_cloud.config)\n    with subrepo.chdir():\n        subrepo.dvc_gen(\n            {\"dir\": {\"foo\": \"foo\"}, \"bar\": \"bar\"}, commit=\"add files\"\n        )\n        subrepo.dvc.push()\n\n    path = os.path.relpath(local_cloud.config[\"url\"])\n\n    expected_url = os.path.join(path, \"ac\", \"bd18db4cc2f85cedef654fccc4a4d8\")\n    assert api.get_url(os.path.join(\"subrepo\", \"dir\", \"foo\")) == expected_url\n\n    expected_url = os.path.join(path, \"37\", \"b51d194a7513e45b56f6524f2d51f2\")\n    assert api.get_url(\"subrepo/bar\") == expected_url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_os_test_check_ignore.assert_Having_any_troubl": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_os_test_check_ignore.assert_Having_any_troubl", "embedding": null, "metadata": {"file_path": "tests/func/test_check_ignore.py", "file_name": "test_check_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 17, "span_ids": ["imports", "test_check_ignore"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.ignore import DvcIgnore\nfrom dvc.main import main\n\n\n@pytest.mark.parametrize(\n    \"file,ret,output\", [(\"ignored\", 0, True), (\"not_ignored\", 1, False)]\n)\ndef test_check_ignore(tmp_dir, dvc, file, ret, output, caplog):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"ignored\")\n\n    assert main([\"check-ignore\", file]) == ret\n    assert (file in caplog.text) is output\n    assert \"Having any troubles?\" not in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_details_test_check_ignore_details.assert_output_in_caplog_t": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_details_test_check_ignore_details.assert_output_in_caplog_t", "embedding": null, "metadata": {"file_path": "tests/func/test_check_ignore.py", "file_name": "test_check_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 20, "end_line": 40, "span_ids": ["test_check_ignore_details"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"file,ret,output\",\n    [\n        (\"file\", 0, \"{}:1:f*\\tfile\\n\".format(DvcIgnore.DVCIGNORE_FILE)),\n        (\"foo\", 0, \"{}:2:!foo\\tfoo\\n\".format(DvcIgnore.DVCIGNORE_FILE)),\n        (\n            os.path.join(\"dir\", \"foobar\"),\n            0,\n            \"{}:1:foobar\\t{}\\n\".format(\n                os.path.join(\"dir\", DvcIgnore.DVCIGNORE_FILE),\n                os.path.join(\"dir\", \"foobar\"),\n            ),\n        ),\n    ],\n)\ndef test_check_ignore_details(tmp_dir, dvc, file, ret, output, caplog):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"f*\\n!foo\")\n    tmp_dir.gen({\"dir\": {DvcIgnore.DVCIGNORE_FILE: \"foobar\"}})\n\n    assert main([\"check-ignore\", \"-d\", file]) == ret\n    assert output in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_non_matching_test_check_ignore_out_side_repo.assert_main_check_ignor": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_non_matching_test_check_ignore_out_side_repo.assert_main_check_ignor", "embedding": null, "metadata": {"file_path": "tests/func/test_check_ignore.py", "file_name": "test_check_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 43, "end_line": 83, "span_ids": ["test_check_ignore_error_args_cases", "test_check_ignore_default_dir", "test_check_ignore_dir", "test_check_ignore_out_side_repo", "test_check_ignore_non_matching"], "tokens": 356}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"non_matching\", [True, False])\ndef test_check_ignore_non_matching(tmp_dir, dvc, non_matching, caplog):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"other\")\n    if non_matching:\n        assert main([\"check-ignore\", \"-d\", \"-n\", \"file\"]) == 1\n    else:\n        assert main([\"check-ignore\", \"-d\", \"file\"]) == 1\n\n    assert (\"::\\tfile\\n\" in caplog.text) is non_matching\n\n\n@pytest.mark.parametrize(\n    \"args\",\n    [\n        [\"-n\", \"file\"],\n        [\"-a\", \"file\"],\n        [\"-q\", \"-d\", \"file\"],\n        [\"--stdin\", \"file\"],\n        [],\n    ],\n)\ndef test_check_ignore_error_args_cases(tmp_dir, dvc, args, caplog):\n    assert main([\"check-ignore\"] + args) == 255\n    assert \"Having any troubles?\" not in caplog.text\n\n\n@pytest.mark.parametrize(\"path,ret\", [({\"dir\": {}}, 0), ({\"dir\": \"files\"}, 1)])\ndef test_check_ignore_dir(tmp_dir, dvc, path, ret):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"dir/\")\n    tmp_dir.gen(path)\n\n    assert main([\"check-ignore\", \"-q\", \"dir\"]) == ret\n\n\ndef test_check_ignore_default_dir(tmp_dir, dvc):\n    assert main([\"check-ignore\", \"-q\", \".dvc\"]) == 1\n\n\ndef test_check_ignore_out_side_repo(tmp_dir, dvc):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"file\")\n    assert main([\"check-ignore\", \"-q\", \"../file\"]) == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_sub_repo_test_check_ignore_sub_repo.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_sub_repo_test_check_ignore_sub_repo.assert_", "embedding": null, "metadata": {"file_path": "tests/func/test_check_ignore.py", "file_name": "test_check_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 86, "end_line": 95, "span_ids": ["test_check_ignore_sub_repo"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_check_ignore_sub_repo(tmp_dir, dvc, caplog):\n    tmp_dir.gen(\n        {DvcIgnore.DVCIGNORE_FILE: \"other\", \"dir\": {\".dvc\": {}, \"foo\": \"bar\"}}\n    )\n\n    assert main([\"check-ignore\", \"-d\", os.path.join(\"dir\", \"foo\")]) == 0\n    assert (\n        \"in sub_repo:{}\\t{}\".format(\"dir\", os.path.join(\"dir\", \"foo\"),)\n        in caplog.text\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_sub_dir_ignore_file_test_check_sub_dir_ignore_file.with_sub_dir_chdir_.assert_dvcignore_2_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_sub_dir_ignore_file_test_check_sub_dir_ignore_file.with_sub_dir_chdir_.assert_dvcignore_2_foo_", "embedding": null, "metadata": {"file_path": "tests/func/test_check_ignore.py", "file_name": "test_check_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 98, "end_line": 118, "span_ids": ["test_check_sub_dir_ignore_file"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_check_sub_dir_ignore_file(tmp_dir, dvc, caplog):\n    tmp_dir.gen(\n        {\n            DvcIgnore.DVCIGNORE_FILE: \"other\",\n            \"dir\": {DvcIgnore.DVCIGNORE_FILE: \"bar\\nfoo\", \"foo\": \"bar\"},\n        }\n    )\n\n    assert main([\"check-ignore\", \"-d\", os.path.join(\"dir\", \"foo\")]) == 0\n    assert (\n        \"{}:2:foo\\t{}\".format(\n            os.path.join(\"dir\", DvcIgnore.DVCIGNORE_FILE),\n            os.path.join(\"dir\", \"foo\"),\n        )\n        in caplog.text\n    )\n\n    sub_dir = tmp_dir / \"dir\"\n    with sub_dir.chdir():\n        assert main([\"check-ignore\", \"-d\", \"foo\"]) == 0\n        assert \".dvcignore:2:foo\\tfoo\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_details_all_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_check_ignore.py_test_check_ignore_details_all_", "embedding": null, "metadata": {"file_path": "tests/func/test_check_ignore.py", "file_name": "test_check_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 121, "end_line": 140, "span_ids": ["test_check_ignore_details_all", "test_check_ignore_stdin_mode"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_check_ignore_details_all(tmp_dir, dvc, caplog):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"f*\\n!foo\")\n\n    assert main([\"check-ignore\", \"-d\", \"-a\", \"foo\"]) == 0\n    assert \"{}:1:f*\\tfoo\\n\".format(DvcIgnore.DVCIGNORE_FILE) in caplog.text\n    assert \"{}:2:!foo\\tfoo\\n\".format(DvcIgnore.DVCIGNORE_FILE) in caplog.text\n\n\n@pytest.mark.parametrize(\n    \"file,ret,output\", [(\"ignored\", 0, True), (\"not_ignored\", 1, False)]\n)\ndef test_check_ignore_stdin_mode(\n    tmp_dir, dvc, file, ret, output, caplog, mocker\n):\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"ignored\")\n    mocker.patch(\"builtins.input\", side_effect=[file, \"\"])\n\n    assert main([\"check-ignore\", \"--stdin\"]) == ret\n    assert (file in caplog.text) is output", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkouts_for_pipeline_tracked_outs_test_checkouts_for_pipeline_tracked_outs.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkouts_for_pipeline_tracked_outs_test_checkouts_for_pipeline_tracked_outs.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 831, "end_line": 852, "span_ids": ["test_checkouts_for_pipeline_tracked_outs"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkouts_for_pipeline_tracked_outs(tmp_dir, dvc, scm, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    tmp_dir.gen(\"lorem\", \"lorem\")\n    stage2 = run_copy(\"lorem\", \"ipsum\", name=\"copy-lorem-ipsum\")\n\n    for out in [\"bar\", \"ipsum\"]:\n        (tmp_dir / out).unlink()\n    assert dvc.checkout([\"bar\"])[\"added\"] == [\"bar\"]\n\n    (tmp_dir / \"bar\").unlink()\n    assert set(dvc.checkout([PIPELINE_FILE])[\"added\"]) == {\"bar\", \"ipsum\"}\n\n    for out in [\"bar\", \"ipsum\"]:\n        (tmp_dir / out).unlink()\n    assert set(dvc.checkout([stage1.addressing])[\"added\"]) == {\"bar\"}\n\n    (tmp_dir / \"bar\").unlink()\n    assert set(dvc.checkout([stage2.addressing])[\"added\"]) == {\"ipsum\"}\n\n    (tmp_dir / \"ipsum\").unlink()\n    assert set(dvc.checkout()[\"added\"]) == {\"bar\", \"ipsum\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_from_os_import_fspath_test_commit_recursive.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_from_os_import_fspath_test_commit_recursive.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_commit.py", "file_name": "test_commit.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 20, "span_ids": ["imports", "test_commit_recursive"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from os import fspath\n\nimport pytest\n\nfrom dvc.dependency.base import DependencyDoesNotExistError\nfrom dvc.dvcfile import PIPELINE_FILE\nfrom dvc.output.base import OutputDoesNotExistError\nfrom dvc.stage.exceptions import StageCommitError\nfrom dvc.utils.serialize import dump_yaml, load_yaml\n\n\ndef test_commit_recursive(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"file\": \"text1\", \"subdir\": {\"file2\": \"text2\"}}})\n    stages = dvc.add(\"dir\", recursive=True, no_commit=True)\n\n    assert len(stages) == 2\n    assert dvc.status() != {}\n\n    dvc.commit(\"dir\", recursive=True)\n    assert dvc.status() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_with_deps_test_commit_with_deps.assert_not_stage_outs_0_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_with_deps_test_commit_with_deps.assert_not_stage_outs_0_", "embedding": null, "metadata": {"file_path": "tests/func/test_commit.py", "file_name": "test_commit.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 58, "span_ids": ["test_commit_with_deps"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"run_kw\", [{\"single_stage\": True}, {\"name\": \"copy\"}])\ndef test_commit_with_deps(tmp_dir, dvc, run_copy, run_kw):\n    tmp_dir.gen(\"foo\", \"foo\")\n    (foo_stage,) = dvc.add(\"foo\", no_commit=True)\n    assert foo_stage is not None\n    assert len(foo_stage.outs) == 1\n\n    stage = run_copy(\"foo\", \"file\", no_commit=True, **run_kw)\n    assert stage is not None\n    assert len(stage.outs) == 1\n\n    assert foo_stage.outs[0].changed_cache()\n    assert stage.outs[0].changed_cache()\n\n    dvc.commit(stage.path, with_deps=True)\n    assert not foo_stage.outs[0].changed_cache()\n    assert not stage.outs[0].changed_cache()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_changed_md5_test_commit_changed_md5.assert_md5_not_in_load_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_changed_md5_test_commit_changed_md5.assert_md5_not_in_load_", "embedding": null, "metadata": {"file_path": "tests/func/test_commit.py", "file_name": "test_commit.py", "file_type": "text/x-python", "category": "test", "start_line": 61, "end_line": 73, "span_ids": ["test_commit_changed_md5"], "tokens": 112}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_commit_changed_md5(tmp_dir, dvc):\n    tmp_dir.gen({\"file\": \"file content\"})\n    (stage,) = dvc.add(\"file\", no_commit=True)\n\n    stage_file_content = load_yaml(stage.path)\n    stage_file_content[\"md5\"] = \"1111111111\"\n    dump_yaml(stage.path, stage_file_content)\n\n    with pytest.raises(StageCommitError):\n        dvc.commit(stage.path)\n\n    dvc.commit(stage.path, force=True)\n    assert \"md5\" not in load_yaml(stage.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_no_exec_test_commit_no_exec_missing_out.with_pytest_raises_Output.dvc_commit_stage_path_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_commit.py_test_commit_no_exec_test_commit_no_exec_missing_out.with_pytest_raises_Output.dvc_commit_stage_path_fo", "embedding": null, "metadata": {"file_path": "tests/func/test_commit.py", "file_name": "test_commit.py", "file_type": "text/x-python", "category": "test", "start_line": 76, "end_line": 101, "span_ids": ["test_commit_no_exec", "test_commit_no_exec_missing_dep", "test_commit_no_exec_missing_out"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_commit_no_exec(tmp_dir, dvc):\n    tmp_dir.gen({\"dep\": \"dep\", \"out\": \"out\"})\n    stage = dvc.run(\n        name=\"my\", cmd=\"mycmd\", deps=[\"dep\"], outs=[\"out\"], no_exec=True\n    )\n    assert dvc.status(stage.path)\n    dvc.commit(stage.path, force=True)\n    assert dvc.status(stage.path) == {}\n\n\ndef test_commit_no_exec_missing_dep(tmp_dir, dvc):\n    stage = dvc.run(\n        name=\"my\", cmd=\"mycmd\", deps=[\"dep\"], outs=[\"out\"], no_exec=True\n    )\n    assert dvc.status(stage.path)\n\n    with pytest.raises(DependencyDoesNotExistError):\n        dvc.commit(stage.path, force=True)\n\n\ndef test_commit_no_exec_missing_out(tmp_dir, dvc):\n    stage = dvc.run(name=\"my\", cmd=\"mycmd\", outs=[\"out\"], no_exec=True)\n    assert dvc.status(stage.path)\n\n    with pytest.raises(OutputDoesNotExistError):\n        dvc.commit(stage.path, force=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_logging_all_clouds._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_logging_all_clouds._", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 42, "span_ids": ["imports"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport shutil\n\nimport pytest\nfrom flaky.flaky_decorator import flaky\n\nfrom dvc.cache import NamedCache\nfrom dvc.external_repo import clean_repos\nfrom dvc.main import main\nfrom dvc.remote.base import (\n    STATUS_DELETED,\n    STATUS_MISSING,\n    STATUS_NEW,\n    STATUS_OK,\n)\nfrom dvc.stage.exceptions import StageNotFound\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils.fs import move, remove\nfrom dvc.utils.serialize import dump_yaml, load_yaml\n\nall_clouds = [\n    pytest.lazy_fixture(cloud)\n    for cloud in [\n        \"s3\",\n        \"gs\",\n        \"azure\",\n        \"gdrive\",\n        \"ssh\",\n        \"http\",\n        \"hdfs\",\n        \"webdav\",\n        \"webhdfs\",\n    ]\n] + [\n    pytest.param(\n        pytest.lazy_fixture(\"oss\"),\n        marks=pytest.mark.xfail(\n            reason=\"https://github.com/iterative/dvc/issues/4633\",\n        ),\n    )\n]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_cloud_test_cloud.None_17": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_cloud_test_cloud.None_17", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 126, "span_ids": ["test_cloud"], "tokens": 813}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", all_clouds, indirect=True)\ndef test_cloud(tmp_dir, dvc, remote):  # pylint:disable=unused-argument\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    out = stage.outs[0]\n    cache = out.cache_path\n    md5 = out.hash_info.value\n    info = out.get_used_cache()\n\n    (stage_dir,) = tmp_dir.dvc_gen(\n        {\n            \"data_dir\": {\n                \"data_sub_dir\": {\"data_sub\": \"data_sub\"},\n                \"data\": \"data\",\n                \"empty\": \"\",\n            }\n        }\n    )\n    out_dir = stage_dir.outs[0]\n    cache_dir = out_dir.cache_path\n    name_dir = str(out_dir)\n    md5_dir = out_dir.hash_info.value\n    info_dir = NamedCache.make(out_dir.scheme, md5_dir, name_dir)\n\n    # Check status\n    status = dvc.cloud.status(info, show_checksums=True)\n    expected = {md5: {\"name\": md5, \"status\": STATUS_NEW}}\n    assert status == expected\n\n    status_dir = dvc.cloud.status(info_dir, show_checksums=True)\n    expected = {md5_dir: {\"name\": md5_dir, \"status\": STATUS_NEW}}\n    assert status_dir == expected\n\n    # Move cache and check status\n    # See issue https://github.com/iterative/dvc/issues/4383 for details\n    backup_dir = dvc.cache.local.cache_dir + \".backup\"\n    move(dvc.cache.local.cache_dir, backup_dir)\n    status = dvc.cloud.status(info, show_checksums=True)\n    expected = {md5: {\"name\": md5, \"status\": STATUS_MISSING}}\n    assert status == expected\n\n    status_dir = dvc.cloud.status(info_dir, show_checksums=True)\n    expected = {md5_dir: {\"name\": md5_dir, \"status\": STATUS_MISSING}}\n    assert status_dir == expected\n\n    # Restore original cache:\n    remove(dvc.cache.local.cache_dir)\n    move(backup_dir, dvc.cache.local.cache_dir)\n\n    # Push and check status\n    dvc.cloud.push(info)\n    assert os.path.exists(cache)\n    assert os.path.isfile(cache)\n\n    dvc.cloud.push(info_dir)\n    assert os.path.isfile(cache_dir)\n\n    status = dvc.cloud.status(info, show_checksums=True)\n    expected = {md5: {\"name\": md5, \"status\": STATUS_OK}}\n    assert status == expected\n\n    status_dir = dvc.cloud.status(info_dir, show_checksums=True)\n    expected = {md5_dir: {\"name\": md5_dir, \"status\": STATUS_OK}}\n    assert status_dir == expected\n\n    # Remove and check status\n    remove(dvc.cache.local.cache_dir)\n\n    status = dvc.cloud.status(info, show_checksums=True)\n    expected = {md5: {\"name\": md5, \"status\": STATUS_DELETED}}\n    assert status == expected\n\n    status_dir = dvc.cloud.status(info_dir, show_checksums=True)\n    expected = {md5_dir: {\"name\": md5_dir, \"status\": STATUS_DELETED}}\n    assert status_dir == expected\n\n    # Pull and check status\n    dvc.cloud.pull(info)\n    assert os.path.exists(cache)\n    assert os.path.isfile(cache)\n    with open(cache) as fd:\n        assert fd.read() == \"foo\"\n\n    dvc.cloud.pull(info_dir)\n    assert os.path.isfile(cache_dir)\n\n    status = dvc.cloud.status(info, show_checksums=True)\n    expected = {md5: {\"name\": md5, \"status\": STATUS_OK}}\n    assert status == expected\n\n    status_dir = dvc.cloud.status(info_dir, show_checksums=True)\n    expected = {md5_dir: {\"name\": md5_dir, \"status\": STATUS_OK}}\n    assert status_dir == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_missing_cache_test_missing_cache.assert_bar_not_in_caplog_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_data_cloud.py_test_missing_cache_test_missing_cache.assert_bar_not_in_caplog_", "embedding": null, "metadata": {"file_path": "tests/func/test_data_cloud.py", "file_name": "test_data_cloud.py", "file_type": "text/x-python", "category": "test", "start_line": 236, "end_line": 265, "span_ids": ["test_missing_cache"], "tokens": 269}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_missing_cache(tmp_dir, dvc, local_remote, caplog):\n    tmp_dir.dvc_gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    # purge cache\n    remove(dvc.cache.local.cache_dir)\n\n    header = (\n        \"Some of the cache files do not exist \"\n        \"neither locally nor on remote. Missing cache files:\\n\"\n    )\n    foo = \"name: bar, md5: 37b51d194a7513e45b56f6524f2d51f2\\n\"\n    bar = \"name: foo, md5: acbd18db4cc2f85cedef654fccc4a4d8\\n\"\n\n    caplog.clear()\n    dvc.push()\n    assert header in caplog.text\n    assert foo in caplog.text\n    assert bar in caplog.text\n\n    caplog.clear()\n    dvc.fetch()\n    assert header in caplog.text\n    assert foo in caplog.text\n    assert bar in caplog.text\n\n    caplog.clear()\n    assert dvc.status(cloud=True) == {\"bar\": \"missing\", \"foo\": \"missing\"}\n    assert header not in caplog.text\n    assert foo not in caplog.text\n    assert bar not in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_diff_no_cache_test_diff_no_cache.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_diff_no_cache_test_diff_no_cache.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 183, "end_line": 214, "span_ids": ["test_diff_no_cache"], "tokens": 266}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_no_cache(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen({\"dir\": {\"file\": \"file content\"}}, commit=\"first\")\n    scm.tag(\"v1\")\n\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"file\": \"modified file content\"}}, commit=\"second\"\n    )\n    scm.tag(\"v2\")\n\n    remove(dvc.cache.local.cache_dir)\n\n    # invalidate_dir_info to force cache loading\n    dvc.cache.local._dir_info = {}\n\n    diff = dvc.diff(\"v1\", \"v2\")\n    assert diff[\"added\"] == []\n    assert diff[\"deleted\"] == []\n    assert first(diff[\"modified\"])[\"path\"] == os.path.join(\"dir\", \"\")\n    assert diff[\"not in cache\"] == []\n\n    (tmp_dir / \"dir\" / \"file\").unlink()\n    remove(str(tmp_dir / \"dir\"))\n    diff = dvc.diff()\n    assert diff[\"added\"] == []\n    assert diff[\"deleted\"] == []\n    assert diff[\"modified\"] == []\n    assert diff[\"not in cache\"] == [\n        {\n            \"path\": os.path.join(\"dir\", \"\"),\n            \"hash\": \"f0f7a307d223921557c929f944bf5303.dir\",\n        },\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_removes_dvcfiles_if_no_stages_left_test_remove_stage_removes_dvcfiles_if_no_stages_left.assert_not_tmp_dir_PIP": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_remove_stage_removes_dvcfiles_if_no_stages_left_test_remove_stage_removes_dvcfiles_if_no_stages_left.assert_not_tmp_dir_PIP", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 288, "end_line": 302, "span_ids": ["test_remove_stage_removes_dvcfiles_if_no_stages_left"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_stage_removes_dvcfiles_if_no_stages_left(\n    tmp_dir, dvc, run_copy\n):\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"run_copy\")\n\n    dvc_file = Dvcfile(dvc, PIPELINE_FILE)\n\n    assert dvc_file.exists()\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    assert (tmp_dir / \"foo\").exists()\n\n    dvc_file.remove_stage(dvc_file.stages[\"run_copy\"])\n    assert not dvc_file.exists()\n    assert not (tmp_dir / PIPELINE_LOCK).exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_relative_remote_test_relative_remote.with_external_repo_url_a.with_repo_open_by_relpath.assert_fd_read_cont": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_relative_remote_test_relative_remote.with_external_repo_url_a.with_repo_open_by_relpath.assert_fd_read_cont", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 104, "end_line": 125, "span_ids": ["test_relative_remote"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_relative_remote(erepo_dir, tmp_dir):\n    # these steps reproduce the script on this issue:\n    # https://github.com/iterative/dvc/issues/2756\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file\")\n\n    upstream_dir = tmp_dir\n    upstream_url = relpath(upstream_dir, erepo_dir)\n    erepo_dir.add_remote(url=upstream_url)\n\n    erepo_dir.dvc.push()\n\n    (erepo_dir / \"file\").unlink()\n    remove(erepo_dir.dvc.cache.local.cache_dir)\n\n    url = os.fspath(erepo_dir)\n\n    with external_repo(url) as repo:\n        assert os.path.isabs(repo.config[\"remote\"][\"upstream\"][\"url\"])\n        assert os.path.isdir(repo.config[\"remote\"][\"upstream\"][\"url\"])\n        with repo.open_by_relpath(\"file\") as fd:\n            assert fd.read() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_shallow_clone_branch_test_shallow_clone_branch.with_patch_object_Git_c.assert_not_shallow": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_shallow_clone_branch_test_shallow_clone_branch.with_patch_object_Git_c.assert_not_shallow", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 128, "end_line": 151, "span_ids": ["test_shallow_clone_branch"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_shallow_clone_branch(erepo_dir):\n    with erepo_dir.chdir():\n        with erepo_dir.branch(\"branch\", new=True):\n            erepo_dir.dvc_gen(\"file\", \"branch\", commit=\"create file on branch\")\n        erepo_dir.dvc_gen(\"file\", \"master\", commit=\"create file on master\")\n\n    url = os.fspath(erepo_dir)\n\n    with patch.object(Git, \"clone\", wraps=Git.clone) as mock_clone:\n        with external_repo(url, rev=\"branch\") as repo:\n            with repo.open_by_relpath(\"file\") as fd:\n                assert fd.read() == \"branch\"\n\n        mock_clone.assert_called_with(url, ANY, shallow_branch=\"branch\")\n        _, shallow = CLONES[url]\n        assert shallow\n\n        with external_repo(url) as repo:\n            with repo.open_by_relpath(\"file\") as fd:\n                assert fd.read() == \"master\"\n\n        assert mock_clone.call_count == 1\n        _, shallow = CLONES[url]\n        assert not shallow", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_shallow_clone_tag_test_shallow_clone_tag.with_patch_object_Git_c.assert_not_shallow": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_shallow_clone_tag_test_shallow_clone_tag.with_patch_object_Git_c.assert_not_shallow", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 154, "end_line": 177, "span_ids": ["test_shallow_clone_tag"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_shallow_clone_tag(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"foo\", commit=\"init\")\n        erepo_dir.scm.tag(\"v1\")\n        erepo_dir.dvc_gen(\"file\", \"bar\", commit=\"update file\")\n\n    url = os.fspath(erepo_dir)\n\n    with patch.object(Git, \"clone\", wraps=Git.clone) as mock_clone:\n        with external_repo(url, rev=\"v1\") as repo:\n            with repo.open_by_relpath(\"file\") as fd:\n                assert fd.read() == \"foo\"\n\n        mock_clone.assert_called_with(url, ANY, shallow_branch=\"v1\")\n        _, shallow = CLONES[url]\n        assert shallow\n\n        with external_repo(url, rev=\"master\") as repo:\n            with repo.open_by_relpath(\"file\") as fd:\n                assert fd.read() == \"bar\"\n\n        assert mock_clone.call_count == 1\n        _, shallow = CLONES[url]\n        assert not shallow", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_subrepos_are_ignored_test_subrepos_are_ignored.with_external_repo_os_fsp.assert_repo_fetch_externa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_subrepos_are_ignored_test_subrepos_are_ignored.with_external_repo_os_fsp.assert_repo_fetch_externa", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 180, "end_line": 212, "span_ids": ["test_subrepos_are_ignored"], "tokens": 307}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_subrepos_are_ignored(tmp_dir, erepo_dir):\n    subrepo = erepo_dir / \"dir\" / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"dir/foo\", \"foo\", commit=\"foo\")\n        erepo_dir.scm_gen(\"dir/bar\", \"bar\", commit=\"bar\")\n\n    with subrepo.chdir():\n        subrepo.dvc_gen({\"file\": \"file\"}, commit=\"add files on subrepo\")\n\n    with external_repo(os.fspath(erepo_dir)) as repo:\n        repo.get_external(\"dir\", \"out\")\n        expected_files = {\"foo\": \"foo\", \"bar\": \"bar\", \".gitignore\": \"/foo\\n\"}\n        assert (tmp_dir / \"out\").read_text() == expected_files\n\n        expected_hash = HashInfo(\"md5\", \"e1d9e8eae5374860ae025ec84cfd85c7.dir\")\n        assert (\n            repo.repo_tree.get_hash(\n                os.path.join(repo.root_dir, \"dir\"), follow_subrepos=False\n            )\n            == expected_hash\n        )\n\n        # clear cache to test `fetch_external` again\n        cache_dir = tmp_dir / repo.cache.local.cache_dir\n        remove(cache_dir)\n        makedirs(cache_dir)\n\n        assert repo.fetch_external([\"dir\"]) == (\n            len(expected_files),\n            0,\n            [expected_hash],\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_subrepos_are_ignored_for_git_tracked_dirs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_external_repo.py_test_subrepos_are_ignored_for_git_tracked_dirs_", "embedding": null, "metadata": {"file_path": "tests/func/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 213, "end_line": 227, "span_ids": ["test_subrepos_are_ignored_for_git_tracked_dirs"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_subrepos_are_ignored_for_git_tracked_dirs(tmp_dir, erepo_dir):\n    subrepo = erepo_dir / \"dir\" / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    with erepo_dir.chdir():\n        scm_files = {\"foo\": \"foo\", \"bar\": \"bar\", \"subdir\": {\"lorem\": \"lorem\"}}\n        erepo_dir.scm_gen({\"dir\": scm_files}, commit=\"add scm dir\")\n\n    with subrepo.chdir():\n        subrepo.dvc_gen({\"file\": \"file\"}, commit=\"add files on subrepo\")\n\n    with external_repo(os.fspath(erepo_dir)) as repo:\n        repo.get_external(\"dir\", \"out\")\n        # subrepo files should not be here\n        assert (tmp_dir / \"out\").read_text() == scm_files", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_pipeline_tracked_outs_test_get_pipeline_tracked_outs.with_git_dir_chdir_.assert_git_dir_baz_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_pipeline_tracked_outs_test_get_pipeline_tracked_outs.with_git_dir_chdir_.assert_git_dir_baz_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 242, "end_line": 256, "span_ids": ["test_get_pipeline_tracked_outs"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_pipeline_tracked_outs(\n    tmp_dir, dvc, scm, git_dir, run_copy, local_remote\n):\n    from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    dvc.push()\n\n    dvc.scm.add([PIPELINE_FILE, PIPELINE_LOCK])\n    dvc.scm.commit(\"add pipeline stage\")\n\n    with git_dir.chdir():\n        Repo.get(\"file:///{}\".format(os.fspath(tmp_dir)), \"bar\", out=\"baz\")\n        assert (git_dir / \"baz\").read_text() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_mixed_dir_test_get_mixed_dir.assert_tmp_dir_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_mixed_dir_test_get_mixed_dir.assert_tmp_dir_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 259, "end_line": 269, "span_ids": ["test_get_mixed_dir"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_mixed_dir(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(os.path.join(\"dir\", \"foo\"), \"foo\", commit=\"foo\")\n        erepo_dir.scm_gen(os.path.join(\"dir\", \"bar\"), \"bar\", commit=\"bar\")\n\n    Repo.get(os.fspath(erepo_dir), \"dir\")\n    assert (tmp_dir / \"dir\").read_text() == {\n        \".gitignore\": \"/foo\\n\",\n        \"foo\": \"foo\",\n        \"bar\": \"bar\",\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_from_subrepos_test_get_from_subrepos.assert_tmp_dir_out_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_from_subrepos_test_get_from_subrepos.assert_tmp_dir_out_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 272, "end_line": 284, "span_ids": ["test_get_from_subrepos"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"is_dvc\", [True, False])\n@pytest.mark.parametrize(\"files\", [{\"foo\": \"foo\"}, {\"dir\": {\"bar\": \"bar\"}}])\ndef test_get_from_subrepos(tmp_dir, erepo_dir, is_dvc, files):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    gen = subrepo.dvc_gen if is_dvc else subrepo.scm_gen\n    with subrepo.chdir():\n        gen(files, commit=\"add files in subrepo\")\n\n    key = next(iter(files))\n    Repo.get(os.fspath(erepo_dir), f\"subrepo/{key}\", out=\"out\")\n\n    assert (tmp_dir / \"out\").read_text() == files[key]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_granular_get_from_subrepos_test_granular_get_from_subrepos.assert_tmp_dir_out_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_granular_get_from_subrepos_test_granular_get_from_subrepos.assert_tmp_dir_out_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 287, "end_line": 295, "span_ids": ["test_granular_get_from_subrepos"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_granular_get_from_subrepos(tmp_dir, erepo_dir):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    with subrepo.chdir():\n        subrepo.dvc_gen({\"dir\": {\"bar\": \"bar\"}}, commit=\"files in subrepo\")\n\n    path = os.path.join(\"subrepo\", \"dir\", \"bar\")\n    Repo.get(os.fspath(erepo_dir), path, out=\"out\")\n    assert (tmp_dir / \"out\").read_text() == \"bar\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_try_to_get_complete_repo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_try_to_get_complete_repo_", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 298, "end_line": 312, "span_ids": ["test_try_to_get_complete_repo"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_try_to_get_complete_repo(tmp_dir, dvc, erepo_dir):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    with subrepo.chdir():\n        subrepo.dvc_gen({\"dir\": {\"bar\": \"bar\"}}, commit=\"files in subrepo\")\n\n    expected_message = \"Cannot fetch a complete DVC repository\"\n    with pytest.raises(IsADVCRepoError) as exc_info:\n        Repo.get(os.fspath(erepo_dir), \"subrepo\", out=\"out\")\n    assert f\"{expected_message} 'subrepo'\" == str(exc_info.value)\n\n    with pytest.raises(IsADVCRepoError) as exc_info:\n        Repo.get(os.fspath(erepo_dir), \".\", out=\"out\")\n    assert expected_message == str(exc_info.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_os_test_ignore_unicode.assert_set_dvc_tree_walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_os_test_ignore_unicode.assert_set_dvc_tree_walk_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 37, "span_ids": ["test_ignore_unicode", "imports", "_to_pattern_info_list", "test_ignore"], "tokens": 309}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport shutil\n\nimport pytest\n\nfrom dvc.exceptions import DvcIgnoreInCollectedDirError\nfrom dvc.ignore import DvcIgnore, DvcIgnorePatterns\nfrom dvc.output.base import OutputIsIgnoredError\nfrom dvc.path_info import PathInfo\nfrom dvc.pathspec_math import PatternInfo, merge_patterns\nfrom dvc.repo import Repo\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import get_mtime_and_size\nfrom tests.dir_helpers import TmpDir\n\n\ndef _to_pattern_info_list(str_list):\n    return [PatternInfo(a, \"\") for a in str_list]\n\n\ndef test_ignore(tmp_dir, dvc, monkeypatch):\n    tmp_dir.gen({\"dir\": {\"ignored\": \"text\", \"other\": \"text2\"}})\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"dir/ignored\")\n\n    dvc.tree._reset()\n\n    path = PathInfo(tmp_dir)\n\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {path / \"dir\" / \"other\"}\n\n\ndef test_ignore_unicode(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"other\": \"text\", \"\u0442\u0435\u0441\u0442\": \"\u043f\u0440\u043e\u0432\u0435\u0440\u043a\u0430\"}})\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"dir/\u0442\u0435\u0441\u0442\")\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {path / \"dir\" / \"other\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_rename_file_test_remove_ignored_file.assert_new_mtime_mtime": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_rename_file_test_remove_ignored_file.assert_new_mtime_mtime", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 54, "end_line": 74, "span_ids": ["test_remove_ignored_file", "test_rename_file"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_rename_file(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    mtime, size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    shutil.move(\"dir/foo\", \"dir/foo_new\")\n    new_mtime, new_size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    assert new_mtime != mtime and new_size == size\n\n\ndef test_remove_ignored_file(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"ignored\": \"...\", \"other\": \"text\"}})\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"dir/ignored\")\n    dvc.tree._reset()\n\n    mtime, size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    os.remove(\"dir/ignored\")\n    new_mtime, new_size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    assert new_mtime == mtime and new_size == size", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_remove_file_test_dvcignore_in_out_dir.with_pytest_raises_DvcIgn.dvc_add_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_remove_file_test_dvcignore_in_out_dir.with_pytest_raises_DvcIgn.dvc_add_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 77, "end_line": 91, "span_ids": ["test_dvcignore_in_out_dir", "test_remove_file"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_file(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    mtime, size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    os.remove(\"dir/foo\")\n    new_mtime, new_size = get_mtime_and_size(\"dir\", dvc.tree)\n\n    assert new_mtime != mtime and new_size != size\n\n\ndef test_dvcignore_in_out_dir(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", DvcIgnore.DVCIGNORE_FILE: \"\"}})\n\n    with pytest.raises(DvcIgnoreInCollectedDirError):\n        dvc.add(\"dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_collecting_dvcignores_test_ignore_collecting_dvcignores.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_collecting_dvcignores_test_ignore_collecting_dvcignores.assert_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 94, "end_line": 122, "span_ids": ["test_ignore_collecting_dvcignores"], "tokens": 247}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"dname\", [\"dir\", \"dir/subdir\"])\ndef test_ignore_collecting_dvcignores(tmp_dir, dvc, dname):\n    tmp_dir.gen({\"dir\": {\"subdir\": {}}})\n\n    top_ignore_file = (tmp_dir / dname).with_name(DvcIgnore.DVCIGNORE_FILE)\n    top_ignore_file.write_text(os.path.basename(dname))\n    dvc.tree._reset()\n\n    ignore_file = tmp_dir / dname / DvcIgnore.DVCIGNORE_FILE\n    ignore_file.write_text(\"foo\")\n\n    dvcignore = dvc.tree.dvcignore\n\n    top_ignore_path = os.path.dirname(os.fspath(top_ignore_file))\n\n    sub_dir_path = os.path.dirname(os.fspath(ignore_file))\n\n    assert (\n        DvcIgnorePatterns(\n            *merge_patterns(\n                _to_pattern_info_list([\".hg/\", \".git/\", \".dvc/\"]),\n                os.fspath(tmp_dir),\n                _to_pattern_info_list([os.path.basename(dname)]),\n                top_ignore_path,\n            )\n        )\n        == dvcignore._get_trie_pattern(top_ignore_path)\n        == dvcignore._get_trie_pattern(sub_dir_path)\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_match_nested_test_match_nested.assert_result_dvcig": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_match_nested_test_match_nested.assert_result_dvcig", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 146, "end_line": 157, "span_ids": ["test_match_nested"], "tokens": 107}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_match_nested(tmp_dir, dvc):\n    tmp_dir.gen(\n        {\n            \".dvcignore\": \"*.backup\\ntmp\",\n            \"foo\": \"foo\",\n            \"tmp\": \"...\",\n            \"dir\": {\"x.backup\": \"x backup\", \"tmp\": \"content\"},\n        }\n    )\n    dvc.tree._reset()\n    result = {os.fspath(os.path.normpath(f)) for f in dvc.tree.walk_files(\".\")}\n    assert result == {\".dvcignore\", \"foo\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_external_test_ignore_external.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_external_test_ignore_external.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 160, "end_line": 173, "span_ids": ["test_ignore_external"], "tokens": 169}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ignore_external(tmp_dir, scm, dvc, tmp_path_factory):\n    tmp_dir.gen(\".dvcignore\", \"*.backup\\ntmp\")\n    ext_dir = TmpDir(os.fspath(tmp_path_factory.mktemp(\"external_dir\")))\n    ext_dir.gen({\"y.backup\": \"y\", \"tmp\": {\"file\": \"ext tmp\"}})\n\n    result = {relpath(f, ext_dir) for f in dvc.tree.walk_files(ext_dir)}\n    assert result == {\"y.backup\", os.path.join(\"tmp\", \"file\")}\n    assert (\n        dvc.tree.dvcignore.is_ignored_dir(os.fspath(ext_dir / \"tmp\")) is False\n    )\n    assert (\n        dvc.tree.dvcignore.is_ignored_file(os.fspath(ext_dir / \"y.backup\"))\n        is False\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_subrepo_test_ignore_subrepo.for___in_subrepo_brancher.assert_subrepo_tree_exist": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_subrepo_test_ignore_subrepo.for___in_subrepo_brancher.assert_subrepo_tree_exist", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 176, "end_line": 191, "span_ids": ["test_ignore_subrepo"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ignore_subrepo(tmp_dir, scm, dvc):\n    tmp_dir.gen({\".dvcignore\": \"foo\", \"subdir\": {\"foo\": \"foo\"}})\n    scm.add([\".dvcignore\"])\n    scm.commit(\"init parent dvcignore\")\n    dvc.tree._reset()\n\n    subrepo_dir = tmp_dir / \"subdir\"\n    assert not dvc.tree.exists(PathInfo(subrepo_dir / \"foo\"))\n\n    with subrepo_dir.chdir():\n        subrepo = Repo.init(subdir=True)\n        scm.add(str(subrepo_dir / \"foo\"))\n        scm.commit(\"subrepo init\")\n\n    for _ in subrepo.brancher(all_commits=True):\n        assert subrepo.tree.exists(PathInfo(subrepo_dir / \"foo\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_resurface_subrepo_test_ignore_blank_line.assert_set_dvc_tree_walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_resurface_subrepo_test_ignore_blank_line.assert_set_dvc_tree_walk_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 194, "end_line": 221, "span_ids": ["test_ignore_resurface_subrepo", "test_ignore_blank_line"], "tokens": 280}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ignore_resurface_subrepo(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo\"}, commit=\"add foo\")\n    subrepo_dir = tmp_dir / \"subdir\"\n    subrepo_dir.mkdir()\n    with subrepo_dir.chdir():\n        Repo.init(subdir=True)\n\n    dvc.tree._reset()\n\n    dirs = [\"subdir\"]\n    files = [\"foo\"]\n    assert dvc.tree.dvcignore(os.fspath(tmp_dir), dirs, files) == ([], files)\n    assert dvc.tree.dvcignore(\n        os.fspath(tmp_dir), dirs, files, ignore_subrepos=False\n    ) == (dirs, files)\n\n    assert dvc.tree.dvcignore.is_ignored_dir(os.fspath(subrepo_dir))\n    assert not dvc.tree.dvcignore.is_ignored_dir(\n        os.fspath(subrepo_dir), ignore_subrepos=False\n    )\n\n\ndef test_ignore_blank_line(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"ignored\": \"text\", \"other\": \"text2\"}})\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"foo\\n\\ndir/ignored\")\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {path / \"dir\" / \"other\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py__It_is_not_possible_to_r_test_ignore_file_in_parent_path.assert_set_dvc_tree_walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py__It_is_not_possible_to_r_test_ignore_file_in_parent_path.assert_set_dvc_tree_walk_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 224, "end_line": 258, "span_ids": ["test_ignore_file_in_parent_path", "test_ignore_blank_line"], "tokens": 278}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# It is not possible to re-include a file if a parent directory of\n# that file is excluded.\n# Git doesn\u2019t list excluded directories for performance reasons,\n# so any patterns on contained files have no effect,\n# no matter where they are defined.\n@pytest.mark.parametrize(\n    \"data_struct, pattern_list, result_set\",\n    [\n        (\n            {\"dir\": {\"subdir\": {\"not_ignore\": \"121\"}}},\n            [\"subdir/*\", \"!not_ignore\"],\n            {os.path.join(\"dir\", \"subdir\", \"not_ignore\")},\n        ),\n        (\n            {\"dir\": {\"subdir\": {\"should_ignore\": \"121\"}}},\n            [\"subdir\", \"!should_ignore\"],\n            set(),\n        ),\n        (\n            {\"dir\": {\"subdir\": {\"should_ignore\": \"121\"}}},\n            [\"subdir/\", \"!should_ignore\"],\n            set(),\n        ),\n    ],\n)\ndef test_ignore_file_in_parent_path(\n    tmp_dir, dvc, data_struct, pattern_list, result_set\n):\n    tmp_dir.gen(data_struct)\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"\\n\".join(pattern_list))\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {\n        path / relpath for relpath in result_set\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py__If_there_is_a_separator_test_ignore_sub_directory.assert_set_dvc_tree_walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py__If_there_is_a_separator_test_ignore_sub_directory.assert_set_dvc_tree_walk_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 261, "end_line": 282, "span_ids": ["test_ignore_file_in_parent_path", "test_ignore_sub_directory"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# If there is a separator at the end of the pattern then the pattern\n# will only match directories,\n# otherwise the pattern can match both files and directories.\n# For example, a pattern doc/frotz/ matches doc/frotz directory,\n# but not a/doc/frotz directory;\ndef test_ignore_sub_directory(tmp_dir, dvc):\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"doc\": {\"fortz\": {\"b\": \"b\"}},\n                \"a\": {\"doc\": {\"fortz\": {\"a\": \"a\"}}},\n            }\n        }\n    )\n    tmp_dir.gen({\"dir\": {DvcIgnore.DVCIGNORE_FILE: \"doc/fortz\"}})\n\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {\n        path / \"dir\" / \"a\" / \"doc\" / \"fortz\" / \"a\",\n        path / \"dir\" / DvcIgnore.DVCIGNORE_FILE,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py__however_frotz_matches__test_ignore_directory.assert_set_dvc_tree_walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py__however_frotz_matches__test_ignore_directory.assert_set_dvc_tree_walk_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 285, "end_line": 293, "span_ids": ["test_ignore_directory", "test_ignore_sub_directory"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# however frotz/ matches frotz and a/frotz that is a directory\ndef test_ignore_directory(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"fortz\": {}, \"a\": {\"fortz\": {}}}})\n    tmp_dir.gen({\"dir\": {DvcIgnore.DVCIGNORE_FILE: \"fortz\"}})\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {\n        path / \"dir\" / DvcIgnore.DVCIGNORE_FILE,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_multi_ignore_file_test_multi_ignore_file.assert_set_dvc_tree_walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_multi_ignore_file_test_multi_ignore_file.assert_set_dvc_tree_walk_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 296, "end_line": 305, "span_ids": ["test_multi_ignore_file"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_multi_ignore_file(tmp_dir, dvc, monkeypatch):\n    tmp_dir.gen({\"dir\": {\"subdir\": {\"should_ignore\": \"1\", \"not_ignore\": \"1\"}}})\n    tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, \"dir/subdir/*_ignore\")\n    tmp_dir.gen({\"dir\": {DvcIgnore.DVCIGNORE_FILE: \"!subdir/not_ignore\"}})\n    dvc.tree._reset()\n    path = PathInfo(tmp_dir)\n    assert set(dvc.tree.walk_files(path / \"dir\")) == {\n        path / \"dir\" / \"subdir\" / \"not_ignore\",\n        path / \"dir\" / DvcIgnore.DVCIGNORE_FILE,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_pattern_trie_tree_test_pattern_trie_tree.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_pattern_trie_tree_test_pattern_trie_tree.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 308, "end_line": 378, "span_ids": ["test_pattern_trie_tree"], "tokens": 570}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pattern_trie_tree(tmp_dir, dvc):\n    tmp_dir.gen(\n        {\n            \"top\": {\n                \"first\": {\n                    DvcIgnore.DVCIGNORE_FILE: \"a\\nb\\nc\",\n                    \"middle\": {\n                        \"second\": {\n                            DvcIgnore.DVCIGNORE_FILE: \"d\\ne\\nf\",\n                            \"bottom\": {},\n                        }\n                    },\n                },\n            },\n            \"other\": {DvcIgnore.DVCIGNORE_FILE: \"1\\n2\\n3\"},\n        }\n    )\n    dvc.tree._reset()\n    dvcignore = dvc.tree.dvcignore\n\n    ignore_pattern_top = dvcignore._get_trie_pattern(\n        os.fspath(tmp_dir / \"top\")\n    )\n    ignore_pattern_other = dvcignore._get_trie_pattern(\n        os.fspath(tmp_dir / \"other\")\n    )\n    ignore_pattern_first = dvcignore._get_trie_pattern(\n        os.fspath(tmp_dir / \"top\" / \"first\")\n    )\n    ignore_pattern_middle = dvcignore._get_trie_pattern(\n        os.fspath(tmp_dir / \"top\" / \"first\" / \"middle\")\n    )\n    ignore_pattern_second = dvcignore._get_trie_pattern(\n        os.fspath(tmp_dir / \"top\" / \"first\" / \"middle\" / \"second\")\n    )\n    ignore_pattern_bottom = dvcignore._get_trie_pattern(\n        os.fspath(tmp_dir / \"top\" / \"first\" / \"middle\" / \"second\" / \"bottom\")\n    )\n\n    base_pattern = (\n        _to_pattern_info_list([\".hg/\", \".git/\", \".dvc/\"]),\n        os.fspath(tmp_dir),\n    )\n    first_pattern = merge_patterns(\n        *base_pattern,\n        _to_pattern_info_list([\"a\", \"b\", \"c\"]),\n        os.fspath(tmp_dir / \"top\" / \"first\")\n    )\n    second_pattern = merge_patterns(\n        *first_pattern,\n        _to_pattern_info_list([\"d\", \"e\", \"f\"]),\n        os.fspath(tmp_dir / \"top\" / \"first\" / \"middle\" / \"second\")\n    )\n    other_pattern = merge_patterns(\n        *base_pattern,\n        _to_pattern_info_list([\"1\", \"2\", \"3\"]),\n        os.fspath(tmp_dir / \"other\")\n    )\n\n    assert DvcIgnorePatterns(*base_pattern) == ignore_pattern_top\n    assert DvcIgnorePatterns(*other_pattern) == ignore_pattern_other\n    assert (\n        DvcIgnorePatterns(*first_pattern)\n        == ignore_pattern_first\n        == ignore_pattern_middle\n    )\n    assert (\n        DvcIgnorePatterns(*second_pattern)\n        == ignore_pattern_second\n        == ignore_pattern_bottom\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_in_added_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ignore.py_test_ignore_in_added_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_ignore.py", "file_name": "test_ignore.py", "file_type": "text/x-python", "category": "test", "start_line": 381, "end_line": 411, "span_ids": ["test_ignored_output", "test_ignore_in_added_dir"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ignore_in_added_dir(tmp_dir, dvc):\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"sub\": {\n                    \"ignored\": {\"content\": \"ignored content\"},\n                    \"not_ignored\": \"not ignored content\",\n                }\n            },\n            \".dvcignore\": \"**/ignored\",\n        }\n    )\n    dvc.tree._reset()\n\n    ignored_path = tmp_dir / \"dir\" / \"sub\" / \"ignored\"\n    assert not dvc.tree.exists(PathInfo(ignored_path))\n    assert ignored_path.exists()\n\n    dvc.add(\"dir\")\n    shutil.rmtree(ignored_path)\n    dvc.checkout()\n\n    assert not ignored_path.exists()\n\n\ndef test_ignored_output(tmp_dir, scm, dvc, run_copy):\n    tmp_dir.gen({\".dvcignore\": \"*.log\", \"foo\": \"foo content\"})\n\n    with pytest.raises(OutputIsIgnoredError):\n        run_copy(\"foo\", \"foo.log\", name=\"copy\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_filecmp_from_tests_unit_tree_test": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_filecmp_from_tests_unit_tree_test", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 17, "span_ids": ["imports"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import filecmp\nimport os\n\nimport pytest\nfrom funcy import first\nfrom mock import patch\n\nimport dvc.data_cloud as cloud\nfrom dvc.cache import Cache\nfrom dvc.config import NoRemoteError\nfrom dvc.dvcfile import Dvcfile\nfrom dvc.exceptions import CollectCacheError, DownloadError, PathMissingError\nfrom dvc.external_repo import IsADVCRepoError\nfrom dvc.stage.exceptions import StagePathNotFoundError\nfrom dvc.system import System\nfrom dvc.utils.fs import makedirs, remove\nfrom tests.unit.tree.test_repo import make_subrepo", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_test_import.assert_stage_deps_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_test_import.assert_stage_deps_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 20, "end_line": 32, "span_ids": ["test_import"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import(tmp_dir, scm, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", commit=\"create foo\")\n\n    stage = dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\")\n\n    assert os.path.isfile(\"foo_imported\")\n    assert (tmp_dir / \"foo_imported\").read_text() == \"foo content\"\n    assert scm.is_ignored(\"foo_imported\")\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_file_from_dir_to_dir_test_import_file_from_dir_to_dir.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_file_from_dir_to_dir_test_import_file_from_dir_to_dir.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 139, "end_line": 158, "span_ids": ["test_import_file_from_dir_to_dir"], "tokens": 192}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_file_from_dir_to_dir(tmp_dir, scm, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({\"dir\": {\"foo\": \"foo\"}}, commit=\"create dir\")\n\n    with pytest.raises(StagePathNotFoundError):\n        dvc.imp(\n            os.fspath(erepo_dir),\n            os.path.join(\"dir\", \"foo\"),\n            out=os.path.join(\"dir\", \"foo\"),\n        )\n\n    tmp_dir.gen({\"dir\": {}})\n    dvc.imp(\n        os.fspath(erepo_dir),\n        os.path.join(\"dir\", \"foo\"),\n        out=os.path.join(\"dir\", \"foo\"),\n    )\n    assert not (tmp_dir / \"foo.dvc\").exists()\n    assert (tmp_dir / \"dir\" / \"foo\").read_text() == \"foo\"\n    assert (tmp_dir / \"dir\" / \"foo.dvc\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_pipeline_tracked_outs_test_import_pipeline_tracked_outs.with_erepo_dir_chdir_.assert_erepo_dir_baz_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_pipeline_tracked_outs_test_import_pipeline_tracked_outs.with_erepo_dir_chdir_.assert_erepo_dir_baz_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 351, "end_line": 367, "span_ids": ["test_import_pipeline_tracked_outs"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_pipeline_tracked_outs(\n    tmp_dir, dvc, scm, erepo_dir, run_copy, local_remote\n):\n    from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    dvc.push()\n\n    dvc.scm.add([PIPELINE_FILE, PIPELINE_LOCK])\n    dvc.scm.commit(\"add pipeline stage\")\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc.imp(\n            \"file:///{}\".format(os.fspath(tmp_dir)), \"bar\", out=\"baz\"\n        )\n        assert (erepo_dir / \"baz\").read_text() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_local_import_test_import_mixed_dir.assert_tmp_dir_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_local_import_test_import_mixed_dir.assert_tmp_dir_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 370, "end_line": 386, "span_ids": ["test_import_mixed_dir", "test_local_import"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_local_import(tmp_dir, dvc, scm):\n    tmp_dir.dvc_gen(\"foo\", \"foo\", commit=\"init\")\n    (tmp_dir / \"outdir\").mkdir()\n    dvc.imp(\".\", \"foo\", out=\"outdir\")\n\n\ndef test_import_mixed_dir(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(os.path.join(\"dir\", \"foo\"), \"foo\", commit=\"foo\")\n        erepo_dir.scm_gen(os.path.join(\"dir\", \"bar\"), \"bar\", commit=\"bar\")\n\n    dvc.imp(os.fspath(erepo_dir), \"dir\")\n    assert (tmp_dir / \"dir\").read_text() == {\n        \".gitignore\": \"/foo\\n\",\n        \"foo\": \"foo\",\n        \"bar\": \"bar\",\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_subrepos_test_import_subrepos.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_subrepos_test_import_subrepos.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 389, "end_line": 408, "span_ids": ["test_import_subrepos"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"is_dvc\", [True, False])\n@pytest.mark.parametrize(\"files\", [{\"foo\": \"foo\"}, {\"dir\": {\"bar\": \"bar\"}}])\ndef test_import_subrepos(tmp_dir, erepo_dir, dvc, scm, is_dvc, files):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    gen = subrepo.dvc_gen if is_dvc else subrepo.scm_gen\n    with subrepo.chdir():\n        gen(files, commit=\"add files in subrepo\")\n\n    key = next(iter(files))\n    path = str((subrepo / key).relative_to(erepo_dir))\n\n    stage = dvc.imp(os.fspath(erepo_dir), path, out=\"out\",)\n\n    assert (tmp_dir / \"out\").read_text() == files[key]\n    assert stage.deps[0].def_path == path\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_granular_import_from_subrepos_test_granular_import_from_subrepos.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_granular_import_from_subrepos_test_granular_import_from_subrepos.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 411, "end_line": 424, "span_ids": ["test_granular_import_from_subrepos"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_granular_import_from_subrepos(tmp_dir, dvc, erepo_dir):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    with subrepo.chdir():\n        subrepo.dvc_gen({\"dir\": {\"bar\": \"bar\"}}, commit=\"files in subrepo\")\n\n    path = os.path.join(\"subrepo\", \"dir\", \"bar\")\n    stage = dvc.imp(os.fspath(erepo_dir), path, out=\"out\")\n    assert (tmp_dir / \"out\").read_text() == \"bar\"\n    assert stage.deps[0].def_path == path\n    assert stage.deps[0].def_repo == {\n        \"url\": os.fspath(erepo_dir),\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_imported_stage_from_subrepos_test_pull_imported_stage_from_subrepos.assert_tmp_dir_out_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_imported_stage_from_subrepos_test_pull_imported_stage_from_subrepos.assert_tmp_dir_out_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 427, "end_line": 451, "span_ids": ["test_pull_imported_stage_from_subrepos"], "tokens": 248}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"is_dvc\", [True, False])\n@pytest.mark.parametrize(\"files\", [{\"foo\": \"foo\"}, {\"dir\": {\"bar\": \"bar\"}}])\ndef test_pull_imported_stage_from_subrepos(\n    tmp_dir, dvc, erepo_dir, is_dvc, files\n):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    gen = subrepo.dvc_gen if is_dvc else subrepo.scm_gen\n    with subrepo.chdir():\n        gen(files, commit=\"files in subrepo\")\n\n    key = first(files)\n    path = os.path.join(\"subrepo\", key)\n    dvc.imp(os.fspath(erepo_dir), path, out=\"out\")\n\n    # clean everything\n    remove(dvc.cache.local.cache_dir)\n    remove(\"out\")\n    makedirs(dvc.cache.local.cache_dir)\n\n    stats = dvc.pull([\"out.dvc\"])\n\n    expected = [f\"out{os.sep}\"] if isinstance(files[key], dict) else [\"out\"]\n    assert stats[\"added\"] == expected\n    assert (tmp_dir / \"out\").read_text() == files[key]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_TestInstall.test_pre_push_hook_TestInstall.test_pre_push_hook.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_TestInstall.test_pre_push_hook_TestInstall.test_pre_push_hook.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_install.py", "file_name": "test_install.py", "file_type": "text/x-python", "category": "test", "start_line": 57, "end_line": 80, "span_ids": ["TestInstall.test_pre_push_hook"], "tokens": 247}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    sys.platform == \"win32\", reason=\"Git hooks aren't supported on Windows\"\n)\nclass TestInstall:\n\n    def test_pre_push_hook(self, tmp_dir, scm, dvc, tmp_path_factory):\n        temp = tmp_path_factory.mktemp(\"external\")\n        git_remote = temp / \"project.git\"\n        storage_path = temp / \"dvc_storage\"\n\n        with dvc.config.edit() as conf:\n            conf[\"remote\"][\"store\"] = {\"url\": os.fspath(storage_path)}\n            conf[\"core\"][\"remote\"] = \"store\"\n        tmp_dir.dvc_gen(\"file\", \"file_content\", \"commit message\")\n\n        file_checksum = file_md5(\"file\")[0]\n        expected_storage_path = (\n            storage_path / file_checksum[:2] / file_checksum[2:]\n        )\n\n        scm.gitpython.repo.clone(os.fspath(git_remote))\n        scm.gitpython.repo.create_remote(\"origin\", os.fspath(git_remote))\n\n        scm.install()\n\n        assert not expected_storage_path.is_file()\n        scm.gitpython.repo.git.push(\"origin\", \"master\")\n        assert expected_storage_path.is_file()\n        assert expected_storage_path.read_text() == \"file_content\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_test_merge_driver_no_ancestor_test_merge_driver_no_ancestor.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_test_merge_driver_no_ancestor_test_merge_driver_no_ancestor.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_install.py", "file_name": "test_install.py", "file_type": "text/x-python", "category": "test", "start_line": 83, "end_line": 115, "span_ids": ["test_merge_driver_no_ancestor"], "tokens": 357}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    sys.platform == \"win32\", reason=\"Git hooks aren't supported on Windows\"\n)\ndef test_merge_driver_no_ancestor(tmp_dir, scm, dvc):\n    with tmp_dir.branch(\"one\", new=True):\n        tmp_dir.dvc_gen({\"data\": {\"foo\": \"foo\"}}, commit=\"one: add data\")\n\n    scm.checkout(\"two\", create_new=True)\n    dvc.checkout()  # keep things in sync\n\n    tmp_dir.dvc_gen({\"data\": {\"bar\": \"bar\"}}, commit=\"two: add data\")\n\n    # installing hook only before merge, as it runs `dvc` commands which makes\n    # `checkouts` and `commits` above slower\n    scm.install()\n    (tmp_dir / \".gitattributes\").write_text(\"*.dvc merge=dvc\")\n\n    scm.gitpython.repo.git.merge(\n        \"one\", m=\"merged\", no_gpg_sign=True, no_signoff=True\n    )\n\n    # NOTE: dvc shouldn't checkout automatically as it might take a long time\n    assert (tmp_dir / \"data\").read_text() == {\"bar\": \"bar\"}\n    assert (tmp_dir / \"data.dvc\").read_text() == (\n        \"outs:\\n\"\n        \"- md5: 5ea40360f5b4ec688df672a4db9c17d1.dir\\n\"\n        \"  size: 6\\n\"\n        \"  nfiles: 2\\n\"\n        \"  path: data\\n\"\n    )\n\n    dvc.checkout(\"data.dvc\")\n    assert (tmp_dir / \"data\").read_text() == {\"foo\": \"foo\", \"bar\": \"bar\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_test_merge_driver_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_install.py_test_merge_driver_", "embedding": null, "metadata": {"file_path": "tests/func/test_install.py", "file_name": "test_install.py", "file_type": "text/x-python", "category": "test", "start_line": 118, "end_line": 157, "span_ids": ["test_merge_driver"], "tokens": 393}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    sys.platform == \"win32\", reason=\"Git hooks aren't supported on Windows\"\n)\ndef test_merge_driver(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen({\"data\": {\"master\": \"master\"}}, commit=\"master: add data\")\n\n    with tmp_dir.branch(\"one\", new=True):\n        tmp_dir.dvc_gen({\"data\": {\"one\": \"one\"}}, commit=\"one: add data\")\n\n    scm.checkout(\"two\", create_new=True)\n    dvc.checkout()  # keep things in sync\n\n    tmp_dir.dvc_gen({\"data\": {\"two\": \"two\"}}, commit=\"two: add data\")\n\n    # installing hook only before merge, as it runs `dvc` commands on\n    # `checkouts` and `commits` which slows tests down\n    scm.install()\n    (tmp_dir / \".gitattributes\").write_text(\"*.dvc merge=dvc\")\n\n    scm.gitpython.repo.git.merge(\n        \"one\", m=\"merged\", no_gpg_sign=True, no_signoff=True\n    )\n\n    # NOTE: dvc shouldn't checkout automatically as it might take a long time\n    assert (tmp_dir / \"data\").read_text() == {\"master\": \"master\", \"two\": \"two\"}\n    assert (tmp_dir / \"data.dvc\").read_text() == (\n        \"outs:\\n\"\n        \"- md5: 839ef9371606817569c1ee0e5f4ed233.dir\\n\"\n        \"  size: 12\\n\"\n        \"  nfiles: 3\\n\"\n        \"  path: data\\n\"\n    )\n\n    dvc.checkout(\"data.dvc\")\n    assert (tmp_dir / \"data\").read_text() == {\n        \"master\": \"master\",\n        \"one\": \"one\",\n        \"two\": \"two\",\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lock.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_lock.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/func/test_lock.py", "file_name": "test_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 30, "span_ids": ["imports", "test_with", "test_cli"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.lock import Lock, LockError\nfrom dvc.main import main\n\n\ndef test_with(tmp_dir, dvc, mocker):\n    # patching to speedup tests\n    mocker.patch(\"dvc.lock.DEFAULT_TIMEOUT\", 0.01)\n\n    lockfile = tmp_dir / dvc.tmp_dir / \"lock\"\n    with Lock(lockfile):\n        with pytest.raises(LockError), Lock(lockfile):\n            pass\n\n\ndef test_cli(tmp_dir, dvc, mocker, caplog):\n    # patching to speedup tests\n    mocker.patch(\"dvc.lock.DEFAULT_TIMEOUT\", 0.01)\n\n    expected_error_msg = (\n        \"Unable to acquire lock. Most likely another DVC process is \"\n        \"running or was terminated abruptly. Check the page \"\n        \"<https://dvc.org/doc/user-guide/troubleshooting#lock-issue> \"\n        \"for other possible reasons and to learn how to resolve this.\"\n    )\n    with Lock(tmp_dir / dvc.tmp_dir / \"lock\"):\n        assert main([\"add\", \"foo\"]) == 1\n    assert expected_error_msg in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_file_out_test_ls_repo_with_missed_path_dvc_only.assert_exc_info_value_dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_path_file_out_test_ls_repo_with_missed_path_dvc_only.assert_exc_info_value_dvc", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 213, "end_line": 251, "span_ids": ["test_ls_repo_with_missed_path_dvc_only", "test_ls_repo_with_path_file_out", "test_ls_repo_with_file_path_fs", "test_ls_repo_with_missed_path"], "tokens": 351}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_path_file_out(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    path = os.path.join(\"data\", \"subcontent\", \"data.xml\")\n    files = Repo.ls(os.fspath(tmp_dir), path)\n    match_files(files, (((\"data.xml\",), True),))\n\n\ndef test_ls_repo_with_file_path_fs(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    path = \"README.md\"\n    files = Repo.ls(os.fspath(tmp_dir), path, recursive=True)\n    match_files(files, (((\"README.md\",), False),))\n\n\ndef test_ls_repo_with_missed_path(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    with pytest.raises(PathMissingError) as exc_info:\n        Repo.ls(os.fspath(tmp_dir), path=\"missed_path\")\n    assert not exc_info.value.dvc_only\n\n\ndef test_ls_repo_with_missed_path_dvc_only(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(FS_STRUCTURE, commit=\"init\")\n    tmp_dir.dvc_gen(DVC_STRUCTURE, commit=\"dvc\")\n\n    with pytest.raises(PathMissingError) as exc_info:\n        Repo.ls(\n            os.fspath(tmp_dir),\n            path=\"missed_path\",\n            recursive=True,\n            dvc_only=True,\n        )\n    assert exc_info.value.dvc_only", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_removed_dvc_dir_test_ls_repo_with_removed_dvc_dir.match_files_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_repo_with_removed_dvc_dir_test_ls_repo_with_removed_dvc_dir.match_files_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 254, "end_line": 269, "span_ids": ["test_ls_repo_with_removed_dvc_dir"], "tokens": 111}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_repo_with_removed_dvc_dir(tmp_dir, dvc, scm):\n    create_dvc_pipeline(tmp_dir, dvc)\n\n    files = Repo.ls(os.fspath(tmp_dir))\n    match_files(\n        files,\n        (\n            ((\"script.py\",), False),\n            ((\"dep.dvc\",), False),\n            ((\"out.dvc\",), False),\n            ((\"dep\",), True),\n            ((\"out\",), False),\n            ((\".dvcignore\",), False),\n            ((\".gitignore\",), False),\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_granular_test_ls_granular.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_granular_test_ls_granular.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 461, "end_line": 485, "span_ids": ["test_ls_granular"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ls_granular(erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\n            {\n                \"dir\": {\n                    \"1\": \"1\",\n                    \"2\": \"2\",\n                    \"subdir\": {\"foo\": \"foo\", \"bar\": \"bar\"},\n                }\n            },\n            commit=\"create dir\",\n        )\n\n    entries = Repo.ls(os.fspath(erepo_dir), os.path.join(\"dir\", \"subdir\"))\n    assert entries == [\n        {\"isout\": False, \"isdir\": False, \"isexec\": False, \"path\": \"bar\"},\n        {\"isout\": False, \"isdir\": False, \"isexec\": False, \"path\": \"foo\"},\n    ]\n\n    entries = Repo.ls(os.fspath(erepo_dir), \"dir\")\n    assert entries == [\n        {\"isout\": False, \"isdir\": False, \"isexec\": False, \"path\": \"1\"},\n        {\"isout\": False, \"isdir\": False, \"isexec\": False, \"path\": \"2\"},\n        {\"isout\": False, \"isdir\": True, \"isexec\": False, \"path\": \"subdir\"},\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_target_test_ls_target.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_ls_target_test_ls_target.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 488, "end_line": 515, "span_ids": ["test_ls_target"], "tokens": 285}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_scm\", [True, False])\ndef test_ls_target(erepo_dir, use_scm):\n    with erepo_dir.chdir():\n        gen = erepo_dir.scm_gen if use_scm else erepo_dir.dvc_gen\n        gen(\n            {\n                \"dir\": {\n                    \"1\": \"1\",\n                    \"2\": \"2\",\n                    \"subdir\": {\"foo\": \"foo\", \"bar\": \"bar\"},\n                }\n            },\n            commit=\"create dir\",\n        )\n\n    def _ls(path):\n        return Repo.ls(os.fspath(erepo_dir), path)\n\n    assert _ls(os.path.join(\"dir\", \"1\")) == [\n        {\"isout\": False, \"isdir\": False, \"isexec\": False, \"path\": \"1\"}\n    ]\n    assert _ls(os.path.join(\"dir\", \"subdir\", \"foo\")) == [\n        {\"isout\": False, \"isdir\": False, \"isexec\": False, \"path\": \"foo\"}\n    ]\n    assert _ls(os.path.join(\"dir\", \"subdir\")) == [\n        {\"isdir\": False, \"isexec\": 0, \"isout\": False, \"path\": \"bar\"},\n        {\"isdir\": False, \"isexec\": 0, \"isout\": False, \"path\": \"foo\"},\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_subrepo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_ls.py_test_subrepo_", "embedding": null, "metadata": {"file_path": "tests/func/test_ls.py", "file_name": "test_ls.py", "file_type": "text/x-python", "category": "test", "start_line": 518, "end_line": 559, "span_ids": ["test_subrepo"], "tokens": 421}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"dvc_top_level, erepo\",\n    [\n        (True, pytest.lazy_fixture(\"erepo_dir\")),\n        (False, pytest.lazy_fixture(\"git_dir\")),\n    ],\n)\ndef test_subrepo(dvc_top_level, erepo):\n    from tests.func.test_get import make_subrepo\n\n    dvc_files = {\"foo.txt\": \"foo.txt\", \"dvc_dir\": {\"lorem\": \"lorem\"}}\n    scm_files = {\"bar.txt\": \"bar.txt\", \"scm_dir\": {\"ipsum\": \"ipsum\"}}\n    subrepo = erepo / \"subrepo\"\n    make_subrepo(subrepo, erepo.scm)\n\n    for repo in [erepo, subrepo]:\n        with repo.chdir():\n            repo.scm_gen(scm_files, commit=f\"scm track for top {repo}\")\n            if hasattr(repo, \"dvc\"):\n                repo.dvc_gen(dvc_files, commit=f\"dvc track for {repo}\")\n\n    def _list_files(path=None):\n        return set(map(itemgetter(\"path\"), Repo.ls(os.fspath(erepo), path)))\n\n    extras = {\".dvcignore\", \".gitignore\"}\n    git_tracked_outputs = {\"bar.txt\", \"scm_dir\"}\n    dvc_files = {\"dvc_dir\", \"foo.txt\", \"foo.txt.dvc\", \"dvc_dir.dvc\"}\n    common_outputs = git_tracked_outputs | extras | dvc_files\n\n    top_level_outputs = (\n        common_outputs if dvc_top_level else git_tracked_outputs\n    )\n    assert _list_files() == top_level_outputs | {\"subrepo\"}\n    assert _list_files(\"subrepo\") == common_outputs\n\n    assert _list_files(\"scm_dir\") == {\"ipsum\"}\n    assert _list_files(\"subrepo/scm_dir\") == {\"ipsum\"}\n\n    if dvc_top_level:\n        assert _list_files(\"dvc_dir\") == {\"lorem\"}\n    assert _list_files(\"subrepo/dvc_dir\") == {\"lorem\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_os_test_merge.assert_tmp_dir_our_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_os_test_merge.assert_tmp_dir_our_", "embedding": null, "metadata": {"file_path": "tests/func/test_merge_driver.py", "file_name": "test_merge_driver.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 67, "span_ids": ["imports", "test_merge", "_gen"], "tokens": 522}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.main import main\nfrom dvc.utils.fs import remove\n\n\ndef _gen(tmp_dir, struct, name):\n    remove(tmp_dir / \"data\")\n    if struct is None:\n        (tmp_dir / name).touch()\n    else:\n        (stage,) = tmp_dir.dvc_gen({\"data\": struct})\n        os.rename(stage.path, name)\n\n\n@pytest.mark.parametrize(\n    \"ancestor, our, their, merged\",\n    [\n        (\n            {\"foo\": \"foo\"},\n            {\"foo\": \"foo\", \"bar\": \"bar\"},\n            {\"foo\": \"foo\", \"baz\": \"baz\"},\n            {\"foo\": \"foo\", \"bar\": \"bar\", \"baz\": \"baz\"},\n        ),\n        (\n            {\"common\": \"common\", \"subdir\": {\"foo\": \"foo\"}},\n            {\"common\": \"common\", \"subdir\": {\"foo\": \"foo\", \"bar\": \"bar\"}},\n            {\"common\": \"common\", \"subdir\": {\"foo\": \"foo\", \"baz\": \"baz\"}},\n            {\n                \"common\": \"common\",\n                \"subdir\": {\"foo\": \"foo\", \"bar\": \"bar\", \"baz\": \"baz\"},\n            },\n        ),\n        ({}, {\"foo\": \"foo\"}, {\"bar\": \"bar\"}, {\"foo\": \"foo\", \"bar\": \"bar\"},),\n        ({}, {}, {\"bar\": \"bar\"}, {\"bar\": \"bar\"},),\n        ({}, {\"foo\": \"foo\"}, {}, {\"foo\": \"foo\"},),\n        (None, {\"foo\": \"foo\"}, {\"bar\": \"bar\"}, {\"foo\": \"foo\", \"bar\": \"bar\"},),\n        (None, None, {\"bar\": \"bar\"}, {\"bar\": \"bar\"},),\n        (None, {\"foo\": \"foo\"}, None, {\"foo\": \"foo\"},),\n    ],\n)\ndef test_merge(tmp_dir, dvc, ancestor, our, their, merged):\n    _gen(tmp_dir, ancestor, \"ancestor\")\n    _gen(tmp_dir, our, \"our\")\n    _gen(tmp_dir, their, \"their\")\n\n    assert (\n        main(\n            [\n                \"git-hook\",\n                \"merge-driver\",\n                \"--ancestor\",\n                \"ancestor\",\n                \"--our\",\n                \"our\",\n                \"--their\",\n                \"their\",\n            ]\n        )\n        == 0\n    )\n\n    _gen(tmp_dir, merged, \"merged\")\n\n    assert (tmp_dir / \"our\").read_text() == (tmp_dir / \"merged\").read_text()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_conflict_test_merge_conflict.assert_error_in_caplog_te": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_conflict_test_merge_conflict.assert_error_in_caplog_te", "embedding": null, "metadata": {"file_path": "tests/func/test_merge_driver.py", "file_name": "test_merge_driver.py", "file_type": "text/x-python", "category": "test", "start_line": 70, "end_line": 114, "span_ids": ["test_merge_conflict"], "tokens": 246}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"ancestor, our, their, error\",\n    [\n        (\n            {\"foo\": \"foo\"},\n            {\"foo\": \"bar\"},\n            {\"foo\": \"baz\"},\n            (\n                \"unable to auto-merge directories with \"\n                \"diff that contains 'change'ed files\"\n            ),\n        ),\n        (\n            {\"common\": \"common\", \"foo\": \"foo\"},\n            {\"common\": \"common\", \"bar\": \"bar\"},\n            {\"baz\": \"baz\"},\n            (\n                \"unable to auto-merge directories with \"\n                \"diff that contains 'remove'ed files\"\n            ),\n        ),\n    ],\n)\ndef test_merge_conflict(tmp_dir, dvc, ancestor, our, their, error, caplog):\n    _gen(tmp_dir, ancestor, \"ancestor\")\n    _gen(tmp_dir, our, \"our\")\n    _gen(tmp_dir, their, \"their\")\n\n    assert (\n        main(\n            [\n                \"git-hook\",\n                \"merge-driver\",\n                \"--ancestor\",\n                \"ancestor\",\n                \"--our\",\n                \"our\",\n                \"--their\",\n                \"their\",\n            ]\n        )\n        != 0\n    )\n\n    assert error in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_different_output_types_test_merge_different_output_types.assert_error_in_caplog_te": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_different_output_types_test_merge_different_output_types.assert_error_in_caplog_te", "embedding": null, "metadata": {"file_path": "tests/func/test_merge_driver.py", "file_name": "test_merge_driver.py", "file_type": "text/x-python", "category": "test", "start_line": 117, "end_line": 148, "span_ids": ["test_merge_different_output_types"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace\", [pytest.lazy_fixture(\"ssh\")], indirect=True\n)\ndef test_merge_different_output_types(tmp_dir, dvc, caplog, workspace):\n    (tmp_dir / \"ancestor\").touch()\n\n    (tmp_dir / \"our\").write_text(\n        \"outs:\\n- md5: f123456789.dir\\n  path: ssh://example.com/path\\n\"\n    )\n\n    (tmp_dir / \"their\").write_text(\n        \"outs:\\n- md5: f987654321.dir\\n  path: path\\n\"\n    )\n\n    assert (\n        main(\n            [\n                \"git-hook\",\n                \"merge-driver\",\n                \"--ancestor\",\n                \"ancestor\",\n                \"--our\",\n                \"our\",\n                \"--their\",\n                \"their\",\n            ]\n        )\n        != 0\n    )\n\n    error = \"unable to auto-merge outputs of different types\"\n    assert error in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_different_output_options_test_merge_different_output_options.assert_error_in_caplog_te": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_different_output_options_test_merge_different_output_options.assert_error_in_caplog_te", "embedding": null, "metadata": {"file_path": "tests/func/test_merge_driver.py", "file_name": "test_merge_driver.py", "file_type": "text/x-python", "category": "test", "start_line": 151, "end_line": 179, "span_ids": ["test_merge_different_output_options"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_merge_different_output_options(tmp_dir, dvc, caplog):\n    (tmp_dir / \"ancestor\").touch()\n\n    (tmp_dir / \"our\").write_text(\n        \"outs:\\n- md5: f123456789.dir\\n  path: path\\n\"\n    )\n\n    (tmp_dir / \"their\").write_text(\n        \"outs:\\n- md5: f987654321.dir\\n  path: path\\n  cache: false\\n\"\n    )\n\n    assert (\n        main(\n            [\n                \"git-hook\",\n                \"merge-driver\",\n                \"--ancestor\",\n                \"ancestor\",\n                \"--our\",\n                \"our\",\n                \"--their\",\n                \"their\",\n            ]\n        )\n        != 0\n    )\n\n    error = \"unable to auto-merge outputs with different options\"\n    assert error in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_file_test_merge_file.assert_err_in_caplog_text": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_file_test_merge_file.assert_err_in_caplog_text", "embedding": null, "metadata": {"file_path": "tests/func/test_merge_driver.py", "file_name": "test_merge_driver.py", "file_type": "text/x-python", "category": "test", "start_line": 182, "end_line": 208, "span_ids": ["test_merge_file"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_merge_file(tmp_dir, dvc, caplog):\n    (tmp_dir / \"ancestor\").touch()\n\n    (tmp_dir / \"our\").write_text(\n        \"outs:\\n- md5: f123456789.dir\\n  path: path\\n\"\n    )\n\n    (tmp_dir / \"their\").write_text(\"outs:\\n- md5: f987654321\\n  path: path\\n\")\n\n    assert (\n        main(\n            [\n                \"git-hook\",\n                \"merge-driver\",\n                \"--ancestor\",\n                \"ancestor\",\n                \"--our\",\n                \"our\",\n                \"--their\",\n                \"their\",\n            ]\n        )\n        != 0\n    )\n\n    err = \"unable to auto-merge outputs that are not directories\"\n    assert err in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_non_dvc_add_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_merge_driver.py_test_merge_non_dvc_add_", "embedding": null, "metadata": {"file_path": "tests/func/test_merge_driver.py", "file_name": "test_merge_driver.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 242, "span_ids": ["test_merge_non_dvc_add"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_merge_non_dvc_add(tmp_dir, dvc, caplog):\n    (tmp_dir / \"ancestor\").touch()\n\n    (tmp_dir / \"our\").write_text(\n        \"outs:\\n\"\n        \"- md5: f123456789.dir\\n\"\n        \"  path: path\\n\"\n        \"- md5: ff123456789.dir\\n\"\n        \"  path: another\\n\"\n    )\n\n    (tmp_dir / \"their\").write_text(\"outs:\\n- md5: f987654321\\n  path: path\\n\")\n\n    assert (\n        main(\n            [\n                \"git-hook\",\n                \"merge-driver\",\n                \"--ancestor\",\n                \"ancestor\",\n                \"--our\",\n                \"our\",\n                \"--their\",\n                \"their\",\n            ]\n        )\n        != 0\n    )\n\n    error = \"unable to auto-merge DVC-files that weren't created by `dvc add`\"\n    assert error in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_local_on_repo_config_test_remote_modify_local_on_repo_config.assert_dvc_config_remote": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_local_on_repo_config_test_remote_modify_local_on_repo_config.assert_dvc_config_remote", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 236, "end_line": 251, "span_ids": ["test_remote_modify_local_on_repo_config"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_modify_local_on_repo_config(tmp_dir, dvc):\n    assert main([\"remote\", \"add\", \"myremote\", \"http://example.com/path\"]) == 0\n    assert (\n        main([\"remote\", \"modify\", \"myremote\", \"user\", \"xxx\", \"--local\"]) == 0\n    )\n    assert dvc.config.load_one(\"local\")[\"remote\"][\"myremote\"] == {\n        \"user\": \"xxx\"\n    }\n    assert dvc.config.load_one(\"repo\")[\"remote\"][\"myremote\"] == {\n        \"url\": \"http://example.com/path\"\n    }\n    dvc.config.load()\n    assert dvc.config[\"remote\"][\"myremote\"] == {\n        \"url\": \"http://example.com/path\",\n        \"user\": \"xxx\",\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_push_order_test_push_order.assert_paths_index_foo_pa": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_push_order_test_push_order.assert_paths_index_foo_pa", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 267, "end_line": 281, "span_ids": ["test_push_order"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_order(tmp_dir, dvc, tmp_path_factory, mocker, local_remote):\n    foo = tmp_dir.dvc_gen({\"foo\": {\"bar\": \"bar content\"}})[0].outs[0]\n    tmp_dir.dvc_gen({\"baz\": \"baz content\"})\n\n    mocked_upload = mocker.patch.object(LocalTree, \"_upload\", return_value=0)\n    dvc.push()\n\n    # foo .dir file should be uploaded after bar\n    remote = dvc.cloud.get_remote(\"upstream\")\n    foo_path = remote.tree.hash_to_path_info(foo.hash_info.value)\n    bar_path = remote.tree.hash_to_path_info(\n        foo.hash_info.dir_info.trie[(\"bar\",)].value\n    )\n    paths = [args[1] for args, _ in mocked_upload.call_args_list]\n    assert paths.index(foo_path) > paths.index(bar_path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_validation_test_remote_modify_validation.assert_unsupported_config": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_modify_validation_test_remote_modify_validation.assert_unsupported_config", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 286, "end_line": 299, "span_ids": ["test_remote_modify_validation"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_modify_validation(dvc):\n    remote_name = \"drive\"\n    unsupported_config = \"unsupported_config\"\n    assert (\n        main([\"remote\", \"add\", \"-d\", remote_name, \"gdrive://test/test\"]) == 0\n    )\n    assert (\n        main(\n            [\"remote\", \"modify\", remote_name, unsupported_config, \"something\"]\n        )\n        == 251\n    )\n    config = configobj.ConfigObj(dvc.config.files[\"repo\"])\n    assert unsupported_config not in config[f'remote \"{remote_name}\"']", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_default_test_remote_default.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_remote_default_test_remote_default.None_11", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 389, "end_line": 411, "span_ids": ["test_remote_default"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remote_default(dvc):\n    remote_name = \"drive\"\n    remote_url = \"gdrive://test/test\"\n    new_name = \"new\"\n    # prepare\n    assert main([\"remote\", \"add\", \"-d\", remote_name, remote_url]) == 0\n    assert main([\"remote\", \"default\", \"--local\", remote_name]) == 0\n    config = dvc.config.load_one(\"repo\")\n    assert config[\"core\"][\"remote\"] == remote_name\n    assert config[\"remote\"][remote_name][\"url\"] == remote_url\n    assert new_name not in config.get(\"remote\", {})\n    local_config = dvc.config.load_one(\"local\")\n    assert local_config[\"core\"][\"remote\"] == remote_name\n\n    # rename success\n    assert main([\"remote\", \"rename\", remote_name, new_name]) == 0\n    config = dvc.config.load_one(\"repo\")\n    assert remote_name not in config.get(\"remote\", {})\n    assert config[\"core\"][\"remote\"] == new_name\n    assert config[\"remote\"][new_name][\"url\"] == remote_url\n    assert remote_name not in config.get(\"remote\", {})\n    local_config = dvc.config.load_one(\"local\")\n    assert local_config[\"core\"][\"remote\"] == new_name", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_protect_local_remote_test_push_incomplete_dir.assert_remote_tree_exists": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_protect_local_remote_test_push_incomplete_dir.assert_remote_tree_exists", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 414, "end_line": 444, "span_ids": ["test_push_incomplete_dir", "test_protect_local_remote"], "tokens": 289}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_protect_local_remote(tmp_dir, dvc, local_remote):\n    (stage,) = tmp_dir.dvc_gen(\"file\", \"file content\")\n\n    dvc.push()\n    remote = dvc.cloud.get_remote(\"upstream\")\n    remote_cache_file = remote.tree.hash_to_path_info(\n        stage.outs[0].hash_info.value\n    )\n\n    assert os.path.exists(remote_cache_file)\n    assert stat.S_IMODE(os.stat(remote_cache_file).st_mode) == 0o444\n\n\ndef test_push_incomplete_dir(tmp_dir, dvc, mocker, local_remote):\n    (stage,) = tmp_dir.dvc_gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    remote = dvc.cloud.get_remote(\"upstream\")\n\n    cache = dvc.cache.local\n    dir_hash = stage.outs[0].hash_info.value\n    used = stage.get_used_cache(remote=remote)\n\n    # remove one of the cache files for directory\n    file_hashes = list(used.child_keys(cache.tree.scheme, dir_hash))\n    remove(cache.tree.hash_to_path_info(file_hashes[0]))\n\n    dvc.push()\n    assert not remote.tree.exists(remote.tree.hash_to_path_info(dir_hash))\n    assert not remote.tree.exists(\n        remote.tree.hash_to_path_info(file_hashes[0])\n    )\n    assert remote.tree.exists(remote.tree.hash_to_path_info(file_hashes[1]))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_upload_exists_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remote.py_test_upload_exists_", "embedding": null, "metadata": {"file_path": "tests/func/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 447, "end_line": 463, "span_ids": ["test_upload_exists"], "tokens": 158}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_upload_exists(tmp_dir, dvc, local_remote):\n    tmp_dir.gen(\"foo\", \"foo\")\n    remote = dvc.cloud.get_remote(\"upstream\")\n    # allow uploaded files to be writable for this test,\n    # normally they are set to read-only for DVC remotes\n    remote.tree.CACHE_MODE = 0o644\n\n    from_info = PathInfo(tmp_dir / \"foo\")\n    to_info = remote.tree.path_info / \"foo\"\n    remote.tree.upload(from_info, to_info)\n    assert remote.tree.exists(to_info)\n\n    tmp_dir.gen(\"foo\", \"bar\")\n    remote.tree.upload(from_info, to_info)\n    with remote.tree.open(to_info) as fobj:\n        assert fobj.read() == \"bar\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproPhony_TestReproDataSource.test.self_assertEqual_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_TestReproPhony_TestReproDataSource.test.self_assertEqual_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 649, "end_line": 679, "span_ids": ["TestReproDataSource.test", "TestReproDataSource", "TestReproPhony", "TestReproPhony.test", "TestNonExistingOutput", "TestNonExistingOutput.test"], "tokens": 213}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestReproPhony(TestReproChangedData):\n    def test(self):\n        stage = self._run(\n            cmd=\"cat \" + self.file1, deps=[self.file1], name=\"no_cmd\"\n        )\n\n        self.swap_foo_with_bar()\n\n        self.dvc.reproduce(self._get_stage_target(stage))\n\n        self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))\n\n\nclass TestNonExistingOutput(TestRepro):\n    def test(self):\n        os.unlink(self.FOO)\n\n        with self.assertRaises(ReproductionError):\n            self.dvc.reproduce(self._get_stage_target(self.stage))\n\n\nclass TestReproDataSource(TestReproChangedData):\n    def test(self):\n        self.swap_foo_with_bar()\n\n        stages = self.dvc.reproduce(self.foo_stage.path)\n\n        self.assertTrue(filecmp.cmp(self.FOO, self.BAR, shallow=False))\n        self.assertEqual(\n            stages[0].outs[0].hash_info.value, file_md5(self.BAR)[0]\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_memory_runs_of_multiple_stages_test_memory_runs_of_multiple_stages.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_memory_runs_of_multiple_stages_test_memory_runs_of_multiple_stages.None_11", "embedding": null, "metadata": {"file_path": "tests/func/test_run_cache.py", "file_name": "test_run_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 117, "end_line": 149, "span_ids": ["test_memory_runs_of_multiple_stages"], "tokens": 319}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_memory_runs_of_multiple_stages(tmp_dir, dvc, run_copy, mocker):\n    tmp_dir.gen(\"foo\", \"foo\")\n    assert not os.path.exists(dvc.stage_cache.cache_dir)\n\n    run_copy(\"foo\", \"foo.bak\", name=\"backup-foo\")\n    assert _recurse_count_files(dvc.stage_cache.cache_dir) == 1\n\n    tmp_dir.gen(\"bar\", \"bar\")\n    run_copy(\"bar\", \"bar.bak\", name=\"backup-bar\")\n    assert _recurse_count_files(dvc.stage_cache.cache_dir) == 2\n\n    from dvc.stage import run as _run\n\n    mock_restore = mocker.spy(dvc.stage_cache, \"restore\")\n    mock_run = mocker.spy(_run, \"cmd_run\")\n\n    (tmp_dir / \"foo.bak\").unlink()\n    (tmp_dir / \"bar.bak\").unlink()\n    (tmp_dir / PIPELINE_LOCK).unlink()\n    (stage,) = dvc.reproduce(\"backup-foo\")\n\n    assert (tmp_dir / \"foo.bak\").read_text() == \"foo\"\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    mock_run.assert_not_called()\n    mock_restore.assert_called_once_with(stage)\n    mock_restore.reset_mock()\n\n    (stage,) = dvc.reproduce(\"backup-bar\")\n\n    assert (tmp_dir / \"bar.bak\").read_text() == \"bar\"\n    assert (tmp_dir / PIPELINE_LOCK).exists()\n    mock_run.assert_not_called()\n    mock_restore.assert_called_once_with(stage)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_restore_pull_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_cache.py_test_restore_pull_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_cache.py", "file_name": "test_run_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 152, "end_line": 174, "span_ids": ["test_restore_pull"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_restore_pull(tmp_dir, dvc, run_copy, mocker, local_remote):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    dvc.push()\n\n    mock_restore = mocker.spy(dvc.stage_cache, \"restore\")\n    mock_run = mocker.patch(\"dvc.stage.run.cmd_run\")\n    mock_checkout = mocker.spy(dvc.cache.local, \"checkout\")\n\n    # removing any information that `dvc` could use to re-generate from\n    (tmp_dir / \"bar\").unlink()\n    (tmp_dir / PIPELINE_LOCK).unlink()\n    remove(stage.outs[0].cache_path)\n\n    (stage,) = dvc.reproduce(\"copy-foo-bar\", pull=True)\n\n    mock_restore.assert_called_once_with(stage, pull=True)\n    mock_run.assert_not_called()\n    mock_checkout.assert_called_once()\n    assert (tmp_dir / \"bar\").exists() and not (tmp_dir / \"foo\").unlink()\n    assert (tmp_dir / PIPELINE_LOCK).exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_params_no_exec_test_run_without_cmd.assert_command_is_not_sp": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_params_no_exec_test_run_without_cmd.assert_command_is_not_sp", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 280, "end_line": 311, "span_ids": ["test_run_params_no_exec", "test_run_without_cmd"], "tokens": 240}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_params_no_exec(tmp_dir, dvc):\n    from dvc.dependency import ParamsDependency\n\n    dump_yaml(tmp_dir / \"params2.yaml\", supported_params)\n    stage = dvc.run(\n        name=\"read_params\",\n        params=[\"params2.yaml:lists\"],\n        cmd=\"cat params2.yaml\",\n        no_exec=True,\n    )\n\n    isinstance(stage.deps[0], ParamsDependency)\n    assert stage.deps[0].params == [\"lists\"]\n    assert not stage.dvcfile._lockfile.exists()\n\n    data, _ = stage.dvcfile._load()\n    assert data[\"stages\"][\"read_params\"][\"params\"] == [\n        {\"params2.yaml\": [\"lists\"]}\n    ]\n\n\n@pytest.mark.parametrize(\n    \"kwargs\",\n    [\n        {\"outs\": [\"foo\"], \"deps\": [\"bar\"]},\n        {\"outs\": [\"foo\"], \"deps\": [\"bar\"], \"name\": \"copy-foo-bar\"},\n    ],\n)\ndef test_run_without_cmd(tmp_dir, dvc, kwargs):\n    with pytest.raises(InvalidArgumentError) as exc:\n        dvc.run(**kwargs)\n    assert \"command is not specified\" == str(exc.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_overwrite_order_test_run_overwrite_order.assert_list_data_stages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_multistage.py_test_run_overwrite_order_test_run_overwrite_order.assert_list_data_stages_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_multistage.py", "file_name": "test_run_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 314, "end_line": 326, "span_ids": ["test_run_overwrite_order"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_overwrite_order(tmp_dir, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE\n\n    tmp_dir.gen({\"foo\": \"foo\", \"foo1\": \"foo1\"})\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n\n    run_copy(\"foo1\", \"bar1\", name=\"copy-foo-bar\", force=True)\n\n    data = parse_yaml_for_update(\n        (tmp_dir / PIPELINE_FILE).read_text(), PIPELINE_FILE\n    )\n    assert list(data[\"stages\"].keys()) == [\"copy-foo-bar\", \"copy-bar-foobar\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_metrics_dir_test_metrics_dir.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_metrics_dir_test_metrics_dir.assert_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 995, "end_line": 1005, "span_ids": ["test_metrics_dir"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"metrics_type\", [\"metrics\", \"metrics_no_cache\"],\n)\ndef test_metrics_dir(tmp_dir, dvc, caplog, run_copy_metrics, metrics_type):\n    copyargs = {metrics_type: [\"dir_metric\"]}\n    tmp_dir.gen({\"dir\": {\"file\": \"content\"}})\n    with caplog.at_level(logging.DEBUG, \"dvc\"):\n        run_copy_metrics(\"dir\", \"dir_metric\", **copyargs)\n    assert (\n        \"directory 'dir_metric' cannot be used as metrics.\" in caplog.messages\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_s3.py_from_functools_import_wra_test_copy_singlepart_preserve_etag.S3Tree__copy_s3_from_inf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_s3.py_from_functools_import_wra_test_copy_singlepart_preserve_etag.S3Tree__copy_s3_from_inf", "embedding": null, "metadata": {"file_path": "tests/func/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 46, "span_ids": ["imports", "_get_src_dst", "test_copy_singlepart_preserve_etag", "reduced_min_part_size"], "tokens": 322}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from functools import wraps\n\nimport boto3\nimport moto.s3.models as s3model\nimport pytest\nfrom moto import mock_s3\n\nfrom dvc.cache.base import CloudCache\nfrom dvc.tree.s3 import S3Tree\nfrom tests.remotes import S3\n\n# from https://github.com/spulec/moto/blob/v1.3.5/tests/test_s3/test_s3.py#L40\nREDUCED_PART_SIZE = 256\n\n\ndef reduced_min_part_size(f):\n    \"\"\" speed up tests by temporarily making the multipart minimum part size\n        small\n    \"\"\"\n    orig_size = s3model.UPLOAD_PART_MIN_SIZE\n\n    @wraps(f)\n    def wrapped(*args, **kwargs):\n        try:\n            s3model.UPLOAD_PART_MIN_SIZE = REDUCED_PART_SIZE\n            return f(*args, **kwargs)\n        finally:\n            s3model.UPLOAD_PART_MIN_SIZE = orig_size\n\n    return wrapped\n\n\ndef _get_src_dst():\n    base_info = S3Tree.PATH_CLS(S3.get_url())\n    return base_info / \"from\", base_info / \"to\"\n\n\n@mock_s3\ndef test_copy_singlepart_preserve_etag():\n    from_info, to_info = _get_src_dst()\n\n    s3 = boto3.client(\"s3\")\n    s3.create_bucket(Bucket=from_info.bucket)\n    s3.put_object(Bucket=from_info.bucket, Key=from_info.path, Body=\"data\")\n\n    S3Tree._copy(s3, from_info, to_info, {})", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_remove_pipeline_stage_test_stage_remove_pipeline_stage.assert_copy_bar_foobar_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_remove_pipeline_stage_test_stage_remove_pipeline_stage.assert_copy_bar_foobar_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 251, "end_line": 264, "span_ids": ["test_stage_remove_pipeline_stage"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_remove_pipeline_stage(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n\n    dvc_file = stage.dvcfile\n    with dvc.lock:\n        stage.remove(purge=False)\n    assert stage.name in dvc_file.stages\n\n    with dvc.lock:\n        stage.remove()\n    assert stage.name not in dvc_file.stages\n    assert \"copy-bar-foobar\" in dvc_file.stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_remove_pointer_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_stage_remove_pointer_stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 286, "end_line": 313, "span_ids": ["test_stage_remove_pointer_stage", "test_stage_run_checkpoint"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_remove_pointer_stage(tmp_dir, dvc, run_copy):\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    with dvc.lock:\n        stage.remove(purge=False)\n    assert not (tmp_dir / \"foo\").exists()\n    assert (tmp_dir / stage.relpath).exists()\n\n    with dvc.lock:\n        stage.remove()\n    assert not (tmp_dir / stage.relpath).exists()\n\n\n@pytest.mark.parametrize(\"checkpoint\", [True, False])\ndef test_stage_run_checkpoint(tmp_dir, dvc, mocker, checkpoint):\n    stage = Stage(dvc, \"stage.dvc\", cmd=\"mycmd arg1 arg2\")\n    mocker.patch.object(stage, \"save\")\n\n    mock_cmd_run = mocker.patch(\"dvc.stage.run.cmd_run\")\n    if checkpoint:\n        callback = mocker.Mock()\n    else:\n        callback = None\n\n    with lock_repo(dvc):\n        run_stage(stage, checkpoint_func=callback)\n    mock_cmd_run.assert_called_with(stage, checkpoint_func=callback, dry=False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_os_test_implied_cloud.assert_mock_status_called": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_os_test_implied_cloud.assert_mock_status_called", "embedding": null, "metadata": {"file_path": "tests/func/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 31, "span_ids": ["imports", "test_quiet", "test_implied_cloud"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nfrom dvc.main import main\n\n\ndef test_quiet(tmp_dir, dvc, capsys):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    # clear\n    capsys.readouterr()\n\n    assert main([\"status\", \"--quiet\"]) == 0\n    out_err = capsys.readouterr()\n    assert not out_err.out\n    assert not out_err.err\n\n    tmp_dir.gen(\"foo\", \"barr\")\n\n    assert main([\"status\", \"--quiet\"]) == 1\n    out_err = capsys.readouterr()\n    assert not out_err.out\n    assert not out_err.err\n\n\ndef test_implied_cloud(dvc, mocker):\n    mock_status = mocker.patch(\n        \"dvc.repo.status._cloud_status\", return_value=True\n    )\n\n    main([\"status\", \"--remote\", \"something\"])\n    assert mock_status.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_recursive_test_status_recursive.assert_dvc_status_targets": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_recursive_test_status_recursive.assert_dvc_status_targets", "embedding": null, "metadata": {"file_path": "tests/func/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 103, "end_line": 120, "span_ids": ["test_status_recursive"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_status_recursive(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"file\": \"text1\", \"subdir\": {\"file2\": \"text2\"}}})\n    stages = dvc.add(\"dir\", recursive=True, no_commit=True)\n\n    assert len(stages) == 2\n\n    assert dvc.status(targets=[\"dir\"], recursive=True) == {\n        os.path.join(\"dir\", \"file.dvc\"): [\n            {\"changed outs\": {os.path.join(\"dir\", \"file\"): \"not in cache\"}}\n        ],\n        os.path.join(\"dir\", \"subdir\", \"file2.dvc\"): [\n            {\n                \"changed outs\": {\n                    os.path.join(\"dir\", \"subdir\", \"file2\"): \"not in cache\"\n                }\n            }\n        ],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_outputs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_status.py_test_status_outputs_", "embedding": null, "metadata": {"file_path": "tests/func/test_status.py", "file_name": "test_status.py", "file_type": "text/x-python", "category": "test", "start_line": 123, "end_line": 142, "span_ids": ["test_status_outputs"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_status_outputs(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    dvc.run(\n        outs=[\"alice\", \"bob\"],\n        deps=[\"foo\", \"bar\"],\n        cmd=\"echo alice>alice && echo bob>bob\",\n        name=\"alice_bob\",\n    )\n    tmp_dir.gen({\"alice\": \"new alice\", \"bob\": \"new bob\"})\n\n    assert dvc.status(targets=[\"alice_bob\"]) == {\n        \"alice_bob\": [\n            {\"changed outs\": {\"alice\": \"modified\", \"bob\": \"modified\"}}\n        ]\n    }\n\n    assert dvc.status(targets=[\"alice\"]) == {\n        \"alice_bob\": [{\"changed outs\": {\"alice\": \"modified\"}}]\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_os_TestLocalTree.test_isfile.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_os_TestLocalTree.test_isfile.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 38, "span_ids": ["TestLocalTree.test_open", "TestLocalTree.test_isdir", "imports", "TestLocalTree.setUp", "TestLocalTree.test_exists", "TestLocalTree", "TestLocalTree.test_isfile"], "tokens": 281}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom operator import itemgetter\nfrom os.path import join\n\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\nfrom dvc.scm import SCM\nfrom dvc.tree.local import LocalTree\nfrom dvc.tree.repo import RepoTree\nfrom dvc.utils.fs import remove\nfrom tests.basic_env import TestDir, TestGit, TestGitSubmodule\n\n\nclass TestLocalTree(TestDir):\n    def setUp(self):\n        super().setUp()\n        self.tree = LocalTree(None, {})\n\n    def test_open(self):\n        with self.tree.open(self.FOO) as fd:\n            self.assertEqual(fd.read(), self.FOO_CONTENTS)\n        with self.tree.open(self.UNICODE, encoding=\"utf-8\") as fd:\n            self.assertEqual(fd.read(), self.UNICODE_CONTENTS)\n\n    def test_exists(self):\n        self.assertTrue(self.tree.exists(self.FOO))\n        self.assertTrue(self.tree.exists(self.UNICODE))\n        self.assertFalse(self.tree.exists(\"not-existing-file\"))\n\n    def test_isdir(self):\n        self.assertTrue(self.tree.isdir(self.DATA_DIR))\n        self.assertFalse(self.tree.isdir(self.FOO))\n        self.assertFalse(self.tree.isdir(\"not-existing-file\"))\n\n    def test_isfile(self):\n        self.assertTrue(self.tree.isfile(self.FOO))\n        self.assertFalse(self.tree.isfile(self.DATA_DIR))\n        self.assertFalse(self.tree.isfile(\"not-existing-file\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_GitTreeTests_GitTreeTests.test_open.None_3.tree_open_self_DATA_DIR_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_GitTreeTests_GitTreeTests.test_open.None_3.tree_open_self_DATA_DIR_", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 55, "span_ids": ["GitTreeTests", "GitTreeTests.test_open"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTreeTests:\n    # pylint: disable=no-member\n    def test_open(self):\n        self.scm.add([self.FOO, self.UNICODE, self.DATA_DIR])\n        self.scm.commit(\"add\")\n\n        tree = self.scm.get_tree(\"master\")\n        with tree.open(self.FOO) as fd:\n            self.assertEqual(fd.read(), self.FOO_CONTENTS)\n        with tree.open(self.UNICODE) as fd:\n            self.assertEqual(fd.read(), self.UNICODE_CONTENTS)\n        with self.assertRaises(IOError):\n            tree.open(\"not-existing-file\")\n        with self.assertRaises(IOError):\n            tree.open(self.DATA_DIR)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_GitTreeTests.test_exists_GitTreeTests.test_exists.None_8": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_GitTreeTests.test_exists_GitTreeTests.test_exists.None_8", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 57, "end_line": 69, "span_ids": ["GitTreeTests.test_exists"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTreeTests:\n\n    def test_exists(self):\n        tree = self.scm.get_tree(\"master\")\n        self.assertFalse(tree.exists(self.FOO))\n        self.assertFalse(tree.exists(self.UNICODE))\n        self.assertFalse(tree.exists(self.DATA_DIR))\n        self.scm.add([self.FOO, self.UNICODE, self.DATA])\n        self.scm.commit(\"add\")\n\n        tree = self.scm.get_tree(\"master\")\n        self.assertTrue(tree.exists(self.FOO))\n        self.assertTrue(tree.exists(self.UNICODE))\n        self.assertTrue(tree.exists(self.DATA_DIR))\n        self.assertFalse(tree.exists(\"non-existing-file\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_GitTreeTests.test_isdir_GitTreeTests.test_isfile.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_GitTreeTests.test_isdir_GitTreeTests.test_isfile.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 71, "end_line": 87, "span_ids": ["GitTreeTests.test_isdir", "GitTreeTests.test_isfile"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTreeTests:\n\n    def test_isdir(self):\n        self.scm.add([self.FOO, self.DATA_DIR])\n        self.scm.commit(\"add\")\n\n        tree = self.scm.get_tree(\"master\")\n        self.assertTrue(tree.isdir(self.DATA_DIR))\n        self.assertFalse(tree.isdir(self.FOO))\n        self.assertFalse(tree.isdir(\"non-existing-file\"))\n\n    def test_isfile(self):\n        self.scm.add([self.FOO, self.DATA_DIR])\n        self.scm.commit(\"add\")\n\n        tree = self.scm.get_tree(\"master\")\n        self.assertTrue(tree.isfile(self.FOO))\n        self.assertFalse(tree.isfile(self.DATA_DIR))\n        self.assertFalse(tree.isfile(\"not-existing-file\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_cleantree_subrepo_test_cleantree_subrepo.assert_subrepo_tree_isdir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_cleantree_subrepo_test_cleantree_subrepo.assert_subrepo_tree_isdir", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 234, "end_line": 253, "span_ids": ["test_cleantree_subrepo"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cleantree_subrepo(tmp_dir, dvc, scm, monkeypatch):\n    tmp_dir.gen({\"subdir\": {}})\n    subrepo_dir = tmp_dir / \"subdir\"\n    with subrepo_dir.chdir():\n        subrepo = Repo.init(subdir=True)\n        subrepo_dir.gen({\"foo\": \"foo\", \"dir\": {\"bar\": \"bar\"}})\n\n    path = PathInfo(subrepo_dir)\n\n    assert dvc.tree.use_dvcignore\n    assert not dvc.tree.exists(path / \"foo\")\n    assert not dvc.tree.isfile(path / \"foo\")\n    assert not dvc.tree.exists(path / \"dir\")\n    assert not dvc.tree.isdir(path / \"dir\")\n\n    assert subrepo.tree.use_dvcignore\n    assert subrepo.tree.exists(path / \"foo\")\n    assert subrepo.tree.isfile(path / \"foo\")\n    assert subrepo.tree.exists(path / \"dir\")\n    assert subrepo.tree.isdir(path / \"dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_walk_dont_ignore_subrepos_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_walk_dont_ignore_subrepos_", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 256, "end_line": 277, "span_ids": ["test_walk_dont_ignore_subrepos"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_dont_ignore_subrepos(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo\"}, commit=\"add foo\")\n    subrepo_dir = tmp_dir / \"subdir\"\n    subrepo_dir.mkdir()\n    with subrepo_dir.chdir():\n        Repo.init(subdir=True)\n    scm.add([\"subdir\"])\n    scm.commit(\"Add subrepo\")\n\n    dvc_tree = dvc.tree\n    dvc_tree._reset()\n    scm_tree = scm.get_tree(\"HEAD\", use_dvcignore=True)\n    path = os.fspath(tmp_dir)\n    get_dirs = itemgetter(1)\n\n    assert get_dirs(next(dvc_tree.walk(path))) == []\n    assert get_dirs(next(scm_tree.walk(path))) == []\n\n    kw = {\"ignore_subrepos\": False}\n    assert get_dirs(next(dvc_tree.walk(path, **kw))) == [\"subdir\"]\n    assert get_dirs(next(scm_tree.walk(path, **kw))) == [\"subdir\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_recursive_test_update_recursive.None_9": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_recursive_test_update_recursive.None_9", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 239, "end_line": 296, "span_ids": ["test_update_recursive"], "tokens": 564}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_update_recursive(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.branch(\"branch\", new=True), erepo_dir.chdir():\n        erepo_dir.scm_gen(\n            {\"foo1\": \"text1\", \"foo2\": \"text2\", \"foo3\": \"text3\"},\n            commit=\"add foo files\",\n        )\n        old_rev = erepo_dir.scm.get_rev()\n\n    tmp_dir.gen({\"dir\": {\"subdir\": {}}})\n    stage1 = dvc.imp(\n        os.fspath(erepo_dir),\n        \"foo1\",\n        os.path.join(\"dir\", \"foo1\"),\n        rev=\"branch\",\n    )\n    stage2 = dvc.imp(\n        os.fspath(erepo_dir),\n        \"foo2\",\n        os.path.join(\"dir\", \"subdir\", \"foo2\"),\n        rev=\"branch\",\n    )\n    stage3 = dvc.imp(\n        os.fspath(erepo_dir),\n        \"foo3\",\n        os.path.join(\"dir\", \"subdir\", \"foo3\"),\n        rev=\"branch\",\n    )\n\n    assert (tmp_dir / os.path.join(\"dir\", \"foo1\")).read_text() == \"text1\"\n    assert (\n        tmp_dir / os.path.join(\"dir\", \"subdir\", \"foo2\")\n    ).read_text() == \"text2\"\n    assert (\n        tmp_dir / os.path.join(\"dir\", \"subdir\", \"foo3\")\n    ).read_text() == \"text3\"\n\n    assert stage1.deps[0].def_repo[\"rev_lock\"] == old_rev\n    assert stage2.deps[0].def_repo[\"rev_lock\"] == old_rev\n    assert stage3.deps[0].def_repo[\"rev_lock\"] == old_rev\n\n    with erepo_dir.branch(\"branch\", new=False), erepo_dir.chdir():\n        erepo_dir.scm_gen(\n            {\"foo1\": \"updated1\", \"foo2\": \"updated2\", \"foo3\": \"updated3\"},\n            \"\",\n            \"update foo content\",\n        )\n        new_rev = erepo_dir.scm.get_rev()\n\n    assert old_rev != new_rev\n\n    dvc.update([\"dir\"], recursive=True)\n\n    stage1 = Dvcfile(dvc, stage1.path).stage\n    stage2 = Dvcfile(dvc, stage2.path).stage\n    stage3 = Dvcfile(dvc, stage3.path).stage\n    assert stage1.deps[0].def_repo[\"rev_lock\"] == new_rev\n    assert stage2.deps[0].def_repo[\"rev_lock\"] == new_rev\n    assert stage3.deps[0].def_repo[\"rev_lock\"] == new_rev", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_from_subrepos_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_update.py_test_update_from_subrepos_", "embedding": null, "metadata": {"file_path": "tests/func/test_update.py", "file_name": "test_update.py", "file_type": "text/x-python", "category": "test", "start_line": 299, "end_line": 326, "span_ids": ["test_update_from_subrepos"], "tokens": 281}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"is_dvc\", [True, False])\ndef test_update_from_subrepos(tmp_dir, dvc, erepo_dir, is_dvc):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    gen = subrepo.dvc_gen if is_dvc else subrepo.scm_gen\n    with subrepo.chdir():\n        gen(\"foo\", \"foo\", commit=\"subrepo initial\")\n\n    path = os.path.join(\"subrepo\", \"foo\")\n    repo_path = os.fspath(erepo_dir)\n    dvc.imp(repo_path, path, out=\"out\")\n    assert dvc.status() == {}\n\n    with subrepo.chdir():\n        gen(\"foo\", \"foobar\", commit=\"subrepo second commit\")\n\n    assert dvc.status()[\"out.dvc\"][0][\"changed deps\"] == {\n        f\"{path} ({repo_path})\": \"update available\"\n    }\n    (stage,) = dvc.update([\"out.dvc\"])\n\n    assert (tmp_dir / \"out\").read_text() == \"foobar\"\n    assert stage.deps[0].def_path == os.path.join(\"subrepo\", \"foo\")\n    assert stage.deps[0].def_repo == {\n        \"url\": repo_path,\n        \"rev_lock\": erepo_dir.scm.get_rev(),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_version.py_re_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_version.py_re_", "embedding": null, "metadata": {"file_path": "tests/func/test_version.py", "file_name": "test_version.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 17, "span_ids": ["imports", "test_"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import re\n\nfrom dvc.main import main\nfrom tests.unit.test_info import PYTHON_VERSION_REGEX\n\n\ndef test_(tmp_dir, dvc, scm, caplog):\n    assert main([\"version\"]) == 0\n\n    assert re.search(r\"DVC version: \\d+\\.\\d+\\.\\d+.*\", caplog.text)\n    assert re.search(f\"Platform: {PYTHON_VERSION_REGEX} on .*\", caplog.text)\n    assert re.search(r\"Supports: .*\", caplog.text)\n    assert re.search(r\"Cache types: .*\", caplog.text)\n    assert re.search(r\"Caches: local\", caplog.text)\n    assert re.search(r\"Remotes: None\", caplog.text)\n    assert \"Repo: dvc, git\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/__init__.py_subprocess_docker_compose_project_name.return._pytest_dvc_test_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/__init__.py_subprocess_docker_compose_project_name.return._pytest_dvc_test_", "embedding": null, "metadata": {"file_path": "tests/remotes/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 68, "span_ids": ["imports", "docker_compose", "docker_compose_project_name", "docker"], "tokens": 484}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import subprocess\n\nimport pytest\n\nfrom .azure import Azure, azure, azure_server  # noqa: F401\nfrom .gdrive import (  # noqa: F401; noqa: F401\n    TEST_GDRIVE_REPO_BUCKET,\n    GDrive,\n    gdrive,\n)\nfrom .gs import (  # noqa: F401; noqa: F401\n    GCP,\n    TEST_GCP_CREDS_FILE,\n    TEST_GCP_REPO_BUCKET,\n    gs,\n)\nfrom .hdfs import HDFS, hadoop, hdfs, hdfs_server, webhdfs  # noqa: F401\nfrom .http import HTTP, http, http_server  # noqa: F401\nfrom .local import Local, local_cloud, local_remote  # noqa: F401\nfrom .oss import (  # noqa: F401\n    OSS,\n    TEST_OSS_REPO_BUCKET,\n    oss,\n    oss_server,\n    real_oss,\n)\nfrom .s3 import S3, TEST_AWS_REPO_BUCKET, real_s3, s3  # noqa: F401\nfrom .ssh import (  # noqa: F401; noqa: F401\n    SSHMocked,\n    ssh,\n    ssh_connection,\n    ssh_server,\n)\nfrom .webdav import Webdav, webdav, webdav_server  # noqa: F401\n\nTEST_REMOTE = \"upstream\"\nTEST_CONFIG = {\n    \"cache\": {},\n    \"core\": {\"remote\": TEST_REMOTE},\n    \"remote\": {TEST_REMOTE: {\"url\": \"\"}},\n}\n\n\n@pytest.fixture(scope=\"session\")\ndef docker():\n    import os\n\n    # See https://travis-ci.community/t/docker-linux-containers-on-windows/301\n    if os.environ.get(\"CI\") and os.name == \"nt\":\n        pytest.skip(\"disabled for Windows on Github Actions\")\n\n    try:\n        subprocess.check_output(\"docker ps\", shell=True)\n    except (subprocess.CalledProcessError, OSError):\n        pytest.skip(\"no docker installed\")\n\n\n@pytest.fixture(scope=\"session\")\ndef docker_compose(docker):\n    try:\n        subprocess.check_output(\"docker-compose version\", shell=True)\n    except (subprocess.CalledProcessError, OSError):\n        pytest.skip(\"no docker-compose installed\")\n\n\n@pytest.fixture(scope=\"session\")\ndef docker_compose_project_name():\n    return \"pytest-dvc-test\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/__init__.py_docker_services_docker_services.return.Services_executor_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/__init__.py_docker_services_docker_services.return.Services_executor_", "embedding": null, "metadata": {"file_path": "tests/remotes/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 65, "end_line": 86, "span_ids": ["docker_services"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture(scope=\"session\")\ndef docker_services(\n    docker_compose_file, docker_compose_project_name, tmp_path_factory\n):\n    # overriding `docker_services` fixture from `pytest_docker` plugin to\n    # only launch docker images once.\n\n    from filelock import FileLock\n    from pytest_docker.plugin import DockerComposeExecutor, Services\n\n    executor = DockerComposeExecutor(\n        docker_compose_file, docker_compose_project_name,\n    )\n\n    # making sure we don't accidentally launch docker-compose in parallel,\n    # as it might result in network conflicts. Inspired by:\n    # https://github.com/pytest-dev/pytest-xdist#making-session-scoped-fixtures-execute-only-once\n    lockfile = tmp_path_factory.getbasetemp().parent / \"docker-compose.lock\"\n    with FileLock(str(lockfile)):\n        executor.execute(\"up --build -d\")\n\n    return Services(executor)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/__init__.py_remote_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/__init__.py_remote_", "embedding": null, "metadata": {"file_path": "tests/remotes/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 89, "end_line": 118, "span_ids": ["workspace", "remote"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef remote(tmp_dir, dvc, request):\n    cloud = request.param\n    assert cloud\n    tmp_dir.add_remote(config=cloud.config)\n    yield cloud\n\n\n@pytest.fixture\ndef workspace(tmp_dir, dvc, request):\n    from dvc.cache import Cache\n\n    cloud = request.param\n\n    assert cloud\n\n    tmp_dir.add_remote(name=\"workspace\", config=cloud.config, default=False)\n    tmp_dir.add_remote(\n        name=\"cache\", url=\"remote://workspace/cache\", default=False\n    )\n\n    scheme = getattr(cloud, \"scheme\", \"local\")\n    if scheme != \"http\":\n        with dvc.config.edit() as conf:\n            conf[\"cache\"][scheme] = \"cache\"\n\n        dvc.cache = Cache(dvc)\n\n    return cloud", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_locale_HDFS.read_text.return.self_read_bytes_decode_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_locale_HDFS.read_text.return.self_read_bytes_decode_", "embedding": null, "metadata": {"file_path": "tests/remotes/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 74, "span_ids": ["HDFS", "HDFS.exists", "HDFS.write_text", "HDFS.read_text", "imports", "HDFS.read_bytes", "HDFS.is_file", "HDFS.is_dir", "HDFS.mkdir", "HDFS.write_bytes", "HDFS._hdfs"], "tokens": 488}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import locale\nimport os\nimport platform\nimport subprocess\nimport uuid\nfrom contextlib import contextmanager\n\nimport pytest\n\nfrom dvc.path_info import URLInfo\nfrom tests import PY39, PYARROW_NOT_AVAILABLE\n\nfrom .base import Base\n\n\nclass HDFS(Base, URLInfo):  # pylint: disable=abstract-method\n    @contextmanager\n    def _hdfs(self):\n        import pyarrow.fs\n\n        conn = pyarrow.fs.HadoopFileSystem(self.host, self.port)\n        yield conn\n\n    def is_file(self):\n        with self._hdfs() as _hdfs:\n            import pyarrow.fs\n\n            file_info = _hdfs.get_file_info(self.path)\n            return file_info.type == pyarrow.fs.FileType.File\n\n    def is_dir(self):\n        with self._hdfs() as _hdfs:\n            import pyarrow.fs\n\n            file_info = _hdfs.get_file_info(self.path)\n            return file_info.type == pyarrow.fs.FileType.Directory\n\n    def exists(self):\n        with self._hdfs() as _hdfs:\n            import pyarrow.fs\n\n            file_info = _hdfs.get_file_info(self.path)\n            return file_info.type != pyarrow.fs.FileType.NotFound\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert mode == 0o777\n        assert parents\n        assert not exist_ok\n\n        with self._hdfs() as _hdfs:\n            # NOTE: fs.create_dir creates parents by default\n            _hdfs.create_dir(self.path)\n\n    def write_bytes(self, contents):\n        with self._hdfs() as _hdfs:\n            with _hdfs.open_output_stream(self.path) as fobj:\n                fobj.write(contents)\n\n    def write_text(self, contents, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        self.write_bytes(contents.encode(encoding))\n\n    def read_bytes(self):\n        with self._hdfs() as _hdfs:\n            with _hdfs.open_input_stream(self.path) as fobj:\n                return fobj.read()\n\n    def read_text(self, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        return self.read_bytes().decode(encoding)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/ssh.py_locale_SSHMocked.get_url.return.url": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/ssh.py_locale_SSHMocked.get_url.return.url", "embedding": null, "metadata": {"file_path": "tests/remotes/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 45, "span_ids": ["imports", "SSHMocked.get_url", "SSHMocked"], "tokens": 394}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import locale\nimport os\nfrom contextlib import contextmanager\n\nimport pytest\nfrom funcy import cached_property\n\nfrom dvc.path_info import URLInfo\n\nfrom .base import Base\nfrom .local import Local\n\nTEST_SSH_USER = \"user\"\nTEST_SSH_KEY_PATH = os.path.join(\n    os.path.abspath(os.path.dirname(__file__)), f\"{TEST_SSH_USER}.key\"\n)\n\n\nclass SSHMocked(Base, URLInfo):\n    @staticmethod\n    def get_url(user, port):  # pylint: disable=arguments-differ\n        path = Local.get_storagepath()\n        if os.name == \"nt\":\n            # NOTE: On Windows Local.get_storagepath() will return an\n            # ntpath that looks something like `C:\\some\\path`, which is not\n            # compatible with SFTP paths [1], so we need to convert it to\n            # a proper posixpath.\n            # To do that, we should construct a posixpath that would be\n            # relative to the server's root.\n            # Our URL format requires absolute paths, so the\n            # resulting path would look like `/some/path`.\n            #\n            # [1]https://tools.ietf.org/html/draft-ietf-secsh-filexfer-13#section-6\n            drive, path = os.path.splitdrive(path)\n\n            # Hackish way to make sure SSH server runs on same drive as tests\n            # and temporary directories are.\n            # Context: https://github.com/iterative/dvc/pull/4660\n            test_drive, _ = os.path.splitdrive(os.getcwd())\n            if drive.lower() != test_drive.lower():\n                raise Exception(\"Did you forget to use `tmp_dir?`\")\n\n            path = path.replace(\"\\\\\", \"/\")\n        url = f\"ssh://{user}@127.0.0.1:{port}{path}\"\n        return url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_collections_test_digest.assert_expected__diges": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_collections_test_digest.assert_expected__diges", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 21, "span_ids": ["imports", "test_digest"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import collections\nimport logging\nimport os\n\nimport mock\nimport pytest\n\nfrom dvc.cli import parse_args\nfrom dvc.command.diff import _digest, _show_md\n\n\n@pytest.mark.parametrize(\n    \"checksum, expected\",\n    [\n        (\"wxyz1234pq\", \"wxyz1234\"),\n        ({\"old\": \"1234567890\", \"new\": \"0987654321\"}, \"12345678..09876543\"),\n    ],\n    ids=[\"str\", \"dict\"],\n)\ndef test_digest(checksum, expected):\n    assert expected == _digest(checksum)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_default_test_default.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_default_test_default.assert_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 24, "end_line": 41, "span_ids": ["test_default"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_default(mocker, caplog):\n    args = parse_args([\"diff\"])\n    cmd = args.func(args)\n    diff = {\n        \"added\": [{\"path\": \"file\", \"hash\": \"00000000\"}],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff)\n\n    assert 0 == cmd.run()\n    assert (\n        \"Added:\\n\"\n        \"    file\\n\"\n        \"\\n\"\n        \"files summary: 1 added, 0 deleted, 0 modified, 0 not in cache\"\n    ) in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_json_test_show_json.assert_not_in_cache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_json_test_show_json.assert_not_in_cache_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 76, "end_line": 94, "span_ids": ["test_show_json"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_json(mocker, caplog):\n    args = parse_args([\"diff\", \"--show-json\"])\n    cmd = args.func(args)\n    diff = {\n        \"added\": [\n            {\"path\": \"file2\", \"hash\": \"22222222\"},\n            {\"path\": \"file1\", \"hash\": \"11111111\"},\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff)\n\n    assert 0 == cmd.run()\n    assert '\"added\": [{\"path\": \"file1\"}, {\"path\": \"file2\"}]' in caplog.text\n    assert '\"deleted\": []' in caplog.text\n    assert '\"modified\": []' in caplog.text\n    assert '\"not in cache\": []' in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_json_and_hash_test_show_json_and_hash.assert_not_in_cache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_json_and_hash_test_show_json_and_hash.assert_not_in_cache_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 97, "end_line": 120, "span_ids": ["test_show_json_and_hash"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_json_and_hash(mocker, caplog):\n    args = parse_args([\"diff\", \"--show-json\", \"--show-hash\"])\n    cmd = args.func(args)\n\n    diff = {\n        \"added\": [\n            # py35: maintain a consistent key order for tests purposes\n            collections.OrderedDict([(\"path\", \"file2\"), (\"hash\", \"22222222\")]),\n            collections.OrderedDict([(\"path\", \"file1\"), (\"hash\", \"11111111\")]),\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff)\n\n    assert 0 == cmd.run()\n    assert (\n        '\"added\": [{\"path\": \"file1\", \"hash\": \"11111111\"}, '\n        '{\"path\": \"file2\", \"hash\": \"22222222\"}]' in caplog.text\n    )\n    assert '\"deleted\": []' in caplog.text\n    assert '\"modified\": []' in caplog.text\n    assert '\"not in cache\": []' in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_json_hide_missing_test_show_json_hide_missing.assert_not_in_cache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_json_hide_missing_test_show_json_hide_missing.assert_not_in_cache_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 123, "end_line": 141, "span_ids": ["test_show_json_hide_missing"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_json_hide_missing(mocker, caplog):\n    args = parse_args([\"diff\", \"--show-json\", \"--hide-missing\"])\n    cmd = args.func(args)\n    diff = {\n        \"added\": [\n            {\"path\": \"file2\", \"hash\": \"22222222\"},\n            {\"path\": \"file1\", \"hash\": \"11111111\"},\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff)\n\n    assert 0 == cmd.run()\n    assert '\"added\": [{\"path\": \"file1\"}, {\"path\": \"file2\"}]' in caplog.text\n    assert '\"deleted\": []' in caplog.text\n    assert '\"modified\": []' in caplog.text\n    assert '\"not in cache\": []' not in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_diff_show_md_and_hash_test_diff_show_md_and_hash.mock_show_md_assert_calle": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_diff_show_md_and_hash_test_diff_show_md_and_hash.mock_show_md_assert_calle", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 144, "end_line": 156, "span_ids": ["test_diff_show_md_and_hash"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"show_hash\", [None, True, False])\n@mock.patch(\"dvc.command.diff._show_md\")\ndef test_diff_show_md_and_hash(mock_show_md, mocker, caplog, show_hash):\n    options = [\"diff\", \"--show-md\"] + ([\"--show-hash\"] if show_hash else [])\n    args = parse_args(options)\n    cmd = args.func(args)\n\n    diff = {}\n    show_hash = show_hash if show_hash else False\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff.copy())\n\n    assert 0 == cmd.run()\n    mock_show_md.assert_called_once_with(diff, show_hash, False)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_md_test_show_md.assert__show_md_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_md_test_show_md.assert__show_md_diff_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 186, "end_line": 208, "span_ids": ["test_show_md"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_md():\n    diff = {\n        \"deleted\": [\n            {\"path\": \"zoo\"},\n            {\"path\": os.path.join(\"data\", \"\")},\n            {\"path\": os.path.join(\"data\", \"foo\")},\n            {\"path\": os.path.join(\"data\", \"bar\")},\n        ],\n        \"modified\": [{\"path\": \"file\"}],\n        \"added\": [{\"path\": \"file\"}],\n        \"not in cache\": [{\"path\": \"file2\"}],\n    }\n    assert _show_md(diff) == (\n        \"| Status       | Path     |\\n\"\n        \"|--------------|----------|\\n\"\n        \"| added        | file     |\\n\"\n        \"| deleted      | zoo      |\\n\"\n        \"| deleted      | data{sep}    |\\n\"\n        \"| deleted      | data{sep}foo |\\n\"\n        \"| deleted      | data{sep}bar |\\n\"\n        \"| modified     | file     |\\n\"\n        \"| not in cache | file2    |\\n\"\n    ).format(sep=os.path.sep)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_md_with_hash_test_show_md_with_hash.assert__show_md_diff_sho": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_md_with_hash_test_show_md_with_hash.assert__show_md_diff_sho", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 235, "span_ids": ["test_show_md_with_hash"], "tokens": 333}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_md_with_hash():\n    diff = {\n        \"deleted\": [\n            {\"path\": \"zoo\", \"hash\": \"22222\"},\n            {\"path\": os.path.join(\"data\", \"\"), \"hash\": \"XXXXXXXX.dir\"},\n            {\"path\": os.path.join(\"data\", \"foo\"), \"hash\": \"11111111\"},\n            {\"path\": os.path.join(\"data\", \"bar\"), \"hash\": \"00000000\"},\n        ],\n        \"modified\": [\n            {\"path\": \"file\", \"hash\": {\"old\": \"AAAAAAAA\", \"new\": \"BBBBBBBB\"}}\n        ],\n        \"added\": [{\"path\": \"file\", \"hash\": \"00000000\"}],\n        \"not in cache\": [{\"path\": \"file2\", \"hash\": \"12345678\"}],\n    }\n    assert _show_md(diff, show_hash=True) == (\n        \"| Status       | Hash               | Path     |\\n\"\n        \"|--------------|--------------------|----------|\\n\"\n        \"| added        | 00000000           | file     |\\n\"\n        \"| deleted      | 22222              | zoo      |\\n\"\n        \"| deleted      | XXXXXXXX           | data{sep}    |\\n\"\n        \"| deleted      | 11111111           | data{sep}foo |\\n\"\n        \"| deleted      | 00000000           | data{sep}bar |\\n\"\n        \"| modified     | AAAAAAAA..BBBBBBBB | file     |\\n\"\n        \"| not in cache | 12345678           | file2    |\\n\"\n    ).format(sep=os.path.sep)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_md_hide_missing_test_show_md_hide_missing.assert__show_md_diff_hid": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_show_md_hide_missing_test_show_md_hide_missing.assert__show_md_diff_hid", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 238, "end_line": 259, "span_ids": ["test_show_md_hide_missing"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_md_hide_missing():\n    diff = {\n        \"deleted\": [\n            {\"path\": \"zoo\"},\n            {\"path\": os.path.join(\"data\", \"\")},\n            {\"path\": os.path.join(\"data\", \"foo\")},\n            {\"path\": os.path.join(\"data\", \"bar\")},\n        ],\n        \"modified\": [{\"path\": \"file\"}],\n        \"added\": [{\"path\": \"file\"}],\n        \"not in cache\": [{\"path\": \"file2\"}],\n    }\n    assert _show_md(diff, hide_missing=True) == (\n        \"| Status   | Path     |\\n\"\n        \"|----------|----------|\\n\"\n        \"| added    | file     |\\n\"\n        \"| deleted  | zoo      |\\n\"\n        \"| deleted  | data{sep}    |\\n\"\n        \"| deleted  | data{sep}foo |\\n\"\n        \"| deleted  | data{sep}bar |\\n\"\n        \"| modified | file     |\\n\"\n    ).format(sep=os.path.sep)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_hide_missing_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_diff.py_test_hide_missing_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 262, "end_line": 281, "span_ids": ["test_hide_missing"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_hide_missing(mocker, caplog):\n    args = parse_args([\"diff\", \"--hide-missing\"])\n    cmd = args.func(args)\n    diff = {\n        \"added\": [{\"path\": \"file\", \"hash\": \"00000000\"}],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n    mocker.patch(\"dvc.repo.Repo.diff\", return_value=diff)\n\n    assert 0 == cmd.run()\n    assert (\n        \"Added:\\n\"\n        \"    file\\n\"\n        \"\\n\"\n        \"files summary: 1 added, 0 deleted, 0 modified\"\n    ) in caplog.text\n    assert \"not in cache\" not in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_show_test_experiments_show.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_show_test_experiments_show.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 59, "end_line": 83, "span_ids": ["test_experiments_show"], "tokens": 137}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_experiments_show(dvc, scm, mocker):\n    cli_args = parse_args(\n        [\n            \"experiments\",\n            \"show\",\n            \"--all-tags\",\n            \"--all-branches\",\n            \"--all-commits\",\n            \"--sha\",\n        ]\n    )\n    assert cli_args.func == CmdExperimentsShow\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.show.show\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        all_tags=True,\n        all_branches=True,\n        all_commits=True,\n        sha_only=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_plots.py_from_dvc_cli_import_parse_test_plots_diff.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_plots.py_from_dvc_cli_import_parse_test_plots_diff.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_plots.py", "file_name": "test_plots.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 55, "span_ids": ["imports", "test_plots_diff"], "tokens": 301}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.plots import CmdPlotsDiff, CmdPlotsShow\n\n\ndef test_plots_diff(dvc, mocker):\n    cli_args = parse_args(\n        [\n            \"plots\",\n            \"diff\",\n            \"--out\",\n            \"result.extension\",\n            \"-t\",\n            \"template\",\n            \"--targets\",\n            \"datafile\",\n            \"--show-vega\",\n            \"-x\",\n            \"x_field\",\n            \"-y\",\n            \"y_field\",\n            \"--title\",\n            \"my_title\",\n            \"--x-label\",\n            \"x_title\",\n            \"--y-label\",\n            \"y_title\",\n            \"--experiment\",\n            \"HEAD\",\n            \"tag1\",\n            \"tag2\",\n        ]\n    )\n    assert cli_args.func == CmdPlotsDiff\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\n        \"dvc.repo.plots.diff.diff\", return_value={\"datafile\": \"filledtemplate\"}\n    )\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        targets=[\"datafile\"],\n        revs=[\"HEAD\", \"tag1\", \"tag2\"],\n        props={\n            \"template\": \"template\",\n            \"x\": \"x_field\",\n            \"y\": \"y_field\",\n            \"title\": \"my_title\",\n            \"x_label\": \"x_title\",\n            \"y_label\": \"y_title\",\n        },\n        experiment=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_plots.py_test_plots_show_test_plots_show.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_plots.py_test_plots_show_test_plots_show.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_plots.py", "file_name": "test_plots.py", "file_type": "text/x-python", "category": "test", "start_line": 58, "end_line": 85, "span_ids": ["test_plots_show"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plots_show(dvc, mocker):\n    cli_args = parse_args(\n        [\n            \"plots\",\n            \"show\",\n            \"-o\",\n            \"result.extension\",\n            \"-t\",\n            \"template\",\n            \"--show-vega\",\n            \"--no-header\",\n            \"datafile\",\n        ]\n    )\n    assert cli_args.func == CmdPlotsShow\n\n    cmd = cli_args.func(cli_args)\n\n    m = mocker.patch(\n        \"dvc.repo.plots.Plots.show\",\n        return_value={\"datafile\": \"filledtemplate\"},\n    )\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        targets=[\"datafile\"], props={\"template\": \"template\", \"header\": False},\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_pytest_test_loads_params.assert_not_deps_2_hash_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_pytest_test_loads_params.assert_not_deps_2_hash_i", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 45, "span_ids": ["imports", "test_loads_params"], "tokens": 329}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.dependency import ParamsDependency, loadd_from, loads_params\nfrom dvc.dependency.param import BadParamFileError, MissingParamsError\nfrom dvc.stage import Stage\nfrom dvc.utils.serialize import dump_toml, dump_yaml, load_yaml\n\nPARAMS = {\n    \"foo\": 1,\n    \"bar\": 53.135,\n    \"baz\": \"str\",\n    \"qux\": None,\n}\nDEFAULT_PARAMS_FILE = ParamsDependency.DEFAULT_PARAMS_FILE\n\n\ndef test_loads_params(dvc):\n    stage = Stage(dvc)\n    deps = loads_params(\n        stage,\n        [\n            \"foo\",\n            \"bar\",\n            {\"a_file\": [\"baz\", \"bat\"]},\n            {\"b_file\": [\"cat\"]},\n            {},\n            {\"a_file\": [\"foobar\"]},\n        ],\n    )\n    assert len(deps) == 3\n\n    assert isinstance(deps[0], ParamsDependency)\n    assert deps[0].def_path == ParamsDependency.DEFAULT_PARAMS_FILE\n    assert deps[0].params == [\"foo\", \"bar\"]\n    assert not deps[0].hash_info\n\n    assert isinstance(deps[1], ParamsDependency)\n    assert deps[1].def_path == \"a_file\"\n    assert deps[1].params == [\"baz\", \"bat\", \"foobar\"]\n    assert not deps[1].hash_info\n\n    assert isinstance(deps[2], ParamsDependency)\n    assert deps[2].def_path == \"b_file\"\n    assert deps[2].params == [\"cat\"]\n    assert not deps[2].hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_test_params_error_test_read_params_toml.assert_dep_read_params_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_test_params_error_test_read_params_toml.assert_dep_read_params_", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 119, "span_ids": ["test_read_params_default_loader", "test_read_params_nonexistent_file", "test_read_params_toml", "test_dumpd_with_info", "test_dumpd_without_info", "test_read_params_nested", "test_params_error", "test_read_params_unsupported_format", "test_loadd_from", "test_read_params_wrong_suffix"], "tokens": 667}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"params\", [[3], [{\"b_file\": \"cat\"}]])\ndef test_params_error(dvc, params):\n    with pytest.raises(ValueError):\n        loads_params(Stage(dvc), params)\n\n\ndef test_loadd_from(dvc):\n    stage = Stage(dvc)\n    deps = loadd_from(stage, [{\"params\": PARAMS}])\n    assert len(deps) == 1\n    assert isinstance(deps[0], ParamsDependency)\n    assert deps[0].def_path == ParamsDependency.DEFAULT_PARAMS_FILE\n    assert deps[0].params == list(PARAMS.keys())\n    assert deps[0].hash_info.value == PARAMS\n\n\ndef test_dumpd_with_info(dvc):\n    dep = ParamsDependency(Stage(dvc), None, PARAMS)\n    assert dep.dumpd() == {\n        \"path\": DEFAULT_PARAMS_FILE,\n        \"params\": PARAMS,\n    }\n\n\ndef test_dumpd_without_info(dvc):\n    dep = ParamsDependency(Stage(dvc), None, list(PARAMS.keys()))\n    assert dep.dumpd() == {\n        \"path\": DEFAULT_PARAMS_FILE,\n        \"params\": list(PARAMS.keys()),\n    }\n\n\ndef test_read_params_nonexistent_file(dvc):\n    dep = ParamsDependency(Stage(dvc), None, [\"foo\"])\n    assert dep.read_params() == {}\n\n\ndef test_read_params_unsupported_format(tmp_dir, dvc):\n    tmp_dir.gen(DEFAULT_PARAMS_FILE, b\"\\0\\1\\2\\3\\4\\5\\6\\7\")\n    dep = ParamsDependency(Stage(dvc), None, [\"foo\"])\n    with pytest.raises(BadParamFileError):\n        dep.read_params()\n\n\ndef test_read_params_nested(tmp_dir, dvc):\n    dump_yaml(\n        DEFAULT_PARAMS_FILE, {\"some\": {\"path\": {\"foo\": [\"val1\", \"val2\"]}}}\n    )\n    dep = ParamsDependency(Stage(dvc), None, [\"some.path.foo\"])\n    assert dep.read_params() == {\"some.path.foo\": [\"val1\", \"val2\"]}\n\n\ndef test_read_params_default_loader(tmp_dir, dvc):\n    parameters_file = \"parameters.foo\"\n    dump_yaml(parameters_file, {\"some\": {\"path\": {\"foo\": [\"val1\", \"val2\"]}}})\n    dep = ParamsDependency(Stage(dvc), parameters_file, [\"some.path.foo\"])\n    assert dep.read_params() == {\"some.path.foo\": [\"val1\", \"val2\"]}\n\n\ndef test_read_params_wrong_suffix(tmp_dir, dvc):\n    parameters_file = \"parameters.toml\"\n    dump_yaml(parameters_file, {\"some\": {\"path\": {\"foo\": [\"val1\", \"val2\"]}}})\n    dep = ParamsDependency(Stage(dvc), parameters_file, [\"some.path.foo\"])\n    with pytest.raises(BadParamFileError):\n        dep.read_params()\n\n\ndef test_read_params_toml(tmp_dir, dvc):\n    parameters_file = \"parameters.toml\"\n    dump_toml(parameters_file, {\"some\": {\"path\": {\"foo\": [\"val1\", \"val2\"]}}})\n    dep = ParamsDependency(Stage(dvc), parameters_file, [\"some.path.foo\"])\n    assert dep.read_params() == {\"some.path.foo\": [\"val1\", \"val2\"]}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_test_read_params_py_test_read_params_py.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_test_read_params_py_test_read_params_py.None_3", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 122, "end_line": 186, "span_ids": ["test_read_params_py"], "tokens": 526}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_read_params_py(tmp_dir, dvc):\n    parameters_file = \"parameters.py\"\n    tmp_dir.gen(\n        parameters_file,\n        \"INT: int = 5\\n\"\n        \"FLOAT = 0.001\\n\"\n        \"STR = 'abc'\\n\"\n        \"BOOL: bool = True\\n\"\n        \"DICT = {'a': 1}\\n\"\n        \"LIST = [1, 2, 3]\\n\"\n        \"SET = {4, 5, 6}\\n\"\n        \"TUPLE = (10, 100)\\n\"\n        \"NONE = None\\n\",\n    )\n    dep = ParamsDependency(\n        Stage(dvc),\n        parameters_file,\n        [\n            \"INT\",\n            \"FLOAT\",\n            \"STR\",\n            \"BOOL\",\n            \"DICT\",\n            \"LIST\",\n            \"SET\",\n            \"TUPLE\",\n            \"NONE\",\n        ],\n    )\n    assert dep.read_params() == {\n        \"INT\": 5,\n        \"FLOAT\": 0.001,\n        \"STR\": \"abc\",\n        \"BOOL\": True,\n        \"DICT\": {\"a\": 1},\n        \"LIST\": [1, 2, 3],\n        \"SET\": {4, 5, 6},\n        \"TUPLE\": (10, 100),\n        \"NONE\": None,\n    }\n\n    tmp_dir.gen(\n        parameters_file, \"class Train:\\n    foo = 'val1'\\n    bar = 'val2'\\n\",\n    )\n    dep = ParamsDependency(Stage(dvc), parameters_file, [\"Train.foo\"])\n    assert dep.read_params() == {\"Train.foo\": \"val1\"}\n\n    dep = ParamsDependency(Stage(dvc), parameters_file, [\"Train\"])\n    assert dep.read_params() == {\n        \"Train\": {\"foo\": \"val1\", \"bar\": \"val2\"},\n    }\n\n    tmp_dir.gen(\n        parameters_file,\n        \"x = 4\\n\"\n        \"config.x = 3\\n\"\n        \"class Klass:\\n\"\n        \"    def __init__(self):\\n\"\n        \"        self.a = 'val1'\\n\"\n        \"        container.a = 2\\n\"\n        \"        self.container.a = 1\\n\"\n        \"        a = 'val2'\\n\",\n    )\n    dep = ParamsDependency(Stage(dvc), parameters_file, [\"x\", \"Klass.a\"])\n    assert dep.read_params() == {\"x\": 4, \"Klass.a\": \"val1\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_test_get_hash_missing_config_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_params.py_test_get_hash_missing_config_", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_params.py", "file_name": "test_params.py", "file_type": "text/x-python", "category": "test", "start_line": 189, "end_line": 212, "span_ids": ["test_get_hash_missing_config", "test_params_with_false_values", "test_get_hash_missing_param"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_missing_config(dvc):\n    dep = ParamsDependency(Stage(dvc), None, [\"foo\"])\n    with pytest.raises(MissingParamsError):\n        dep.get_hash()\n\n\ndef test_get_hash_missing_param(tmp_dir, dvc):\n    tmp_dir.gen(DEFAULT_PARAMS_FILE, \"bar: baz\")\n    dep = ParamsDependency(Stage(dvc), None, [\"foo\"])\n    with pytest.raises(MissingParamsError):\n        dep.get_hash()\n\n\n@pytest.mark.parametrize(\"param_value\", [\"\", \"false\", \"[]\", \"{}\", \"null\"])\ndef test_params_with_false_values(tmp_dir, dvc, param_value):\n    \"\"\"These falsy params values should not ignored by `status` on loading.\"\"\"\n    key = \"param\"\n    dep = ParamsDependency(Stage(dvc), DEFAULT_PARAMS_FILE, [key])\n    (tmp_dir / DEFAULT_PARAMS_FILE).write_text(f\"{key}: {param_value}\")\n\n    dep.fill_values(load_yaml(DEFAULT_PARAMS_FILE))\n\n    assert dep.status() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_webdav.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/dependency/test_webdav.py__", "embedding": null, "metadata": {"file_path": "tests/unit/dependency/test_webdav.py", "file_name": "test_webdav.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 8, "span_ids": ["imports", "TestWebDAVDependency", "TestWebDAVDependency._get_cls"], "tokens": 49}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.webdav import WebDAVDependency\nfrom tests.unit.dependency.test_local import TestLocalDependency\n\n\nclass TestWebDAVDependency(TestLocalDependency):\n    def _get_cls(self):\n        return WebDAVDependency", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_allow_agent_test_ssh_allow_agent.assert_tree_allow_agent_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_ssh.py_test_ssh_allow_agent_test_ssh_allow_agent.assert_tree_allow_agent_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_ssh.py", "file_name": "test_ssh.py", "file_type": "text/x-python", "category": "test", "start_line": 186, "end_line": 208, "span_ids": ["test_ssh_allow_agent"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"config,expected_allow_agent\",\n    [\n        ({\"url\": \"ssh://example.com\"}, True),\n        ({\"url\": \"ssh://not_in_ssh_config.com\"}, True),\n        ({\"url\": \"ssh://example.com\", \"allow_agent\": True}, True),\n        ({\"url\": \"ssh://example.com\", \"allow_agent\": False}, False),\n    ],\n)\n@patch(\"os.path.exists\", return_value=True)\n@patch(\n    f\"{builtin_module_name}.open\",\n    new_callable=mock_open,\n    read_data=mock_ssh_config,\n)\ndef test_ssh_allow_agent(\n    mock_file, mock_exists, dvc, config, expected_allow_agent\n):\n    tree = SSHTree(dvc, config)\n\n    mock_exists.assert_called_with(SSHTree.ssh_config_filename())\n    mock_file.assert_called_with(SSHTree.ssh_config_filename())\n    assert tree.allow_agent == expected_allow_agent", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_math_test_cmd_error.with_mock_patch_object_.with_pytest_raises_Remote.BaseTree_dvc_config_rem": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_base.py_math_test_cmd_error.with_mock_patch_object_.with_pytest_raises_Remote.BaseTree_dvc_config_rem", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_base.py", "file_name": "test_base.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["_CallableOrNone.__eq__", "_CallableOrNone", "test_cmd_error", "impl", "imports"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import math\n\nimport mock\nimport pytest\n\nfrom dvc.cache.base import CloudCache\nfrom dvc.path_info import PathInfo\nfrom dvc.tree.base import BaseTree, RemoteCmdError\n\n\nclass _CallableOrNone:\n    \"\"\"Helper for testing if object is callable() or None.\"\"\"\n\n    def __eq__(self, other):\n        return other is None or callable(other)\n\n\nCallableOrNone = _CallableOrNone()\n\n\ndef test_cmd_error(dvc):\n    config = {}\n\n    cmd = \"sed 'hello'\"\n    ret = \"1\"\n    err = \"sed: expression #1, char 2: extra characters after command\"\n\n    with mock.patch.object(\n        BaseTree, \"remove\", side_effect=RemoteCmdError(\"base\", cmd, ret, err),\n    ):\n        with pytest.raises(RemoteCmdError):\n            BaseTree(dvc, config).remove(\"file\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_digest_auth_method_test_digest_auth_method.assert_isinstance_tree__a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_digest_auth_method_test_digest_auth_method.assert_isinstance_tree__a", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 47, "end_line": 64, "span_ids": ["test_digest_auth_method"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_digest_auth_method(dvc):\n    from requests.auth import HTTPDigestAuth\n\n    user = \"username\"\n    password = \"password\"\n    auth = HTTPDigestAuth(user, password)\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n        \"auth\": \"digest\",\n        \"user\": user,\n        \"password\": password,\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._auth_method() == auth\n    assert isinstance(tree._auth_method(), HTTPDigestAuth)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_custom_auth_method_test_ssl_verify_disable.assert_tree__session_veri": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_custom_auth_method_test_ssl_verify_disable.assert_tree__session_veri", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 67, "end_line": 105, "span_ids": ["test_ssl_verify_is_enabled_by_default", "test_custom_auth_method", "test_ssl_verify_disable"], "tokens": 224}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_custom_auth_method(dvc):\n    header = \"Custom-Header\"\n    password = \"password\"\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n        \"auth\": \"custom\",\n        \"custom_auth_header\": header,\n        \"password\": password,\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._auth_method() is None\n    assert header in tree.headers\n    assert tree.headers[header] == password\n\n\ndef test_ssl_verify_is_enabled_by_default(dvc):\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._session.verify is True\n\n\ndef test_ssl_verify_disable(dvc):\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n        \"ssl_verify\": False,\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._session.verify is False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_oss.py_from_dvc_tree_oss_import__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_oss.py_from_dvc_tree_oss_import__", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_oss.py", "file_name": "test_oss.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 23, "span_ids": ["test_init", "imports"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.tree.oss import OSSTree\n\nbucket_name = \"bucket-name\"\nendpoint = \"endpoint\"\nkey_id = \"Fq2UVErCz4I6tq\"\nkey_secret = \"Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSRZ6IFsu\"\n\n\ndef test_init(dvc):\n    prefix = \"some/prefix\"\n    url = f\"oss://{bucket_name}/{prefix}\"\n    config = {\n        \"url\": url,\n        \"oss_key_id\": key_id,\n        \"oss_key_secret\": key_secret,\n        \"oss_endpoint\": endpoint,\n    }\n    tree = OSSTree(dvc, config)\n    assert tree.path_info == url\n    assert tree.endpoint == endpoint\n    assert tree.key_id == key_id\n    assert tree.key_secret == key_secret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_walk_files_test_walk_files.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_remote_tree.py_test_walk_files_test_walk_files.assert_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_remote_tree.py", "file_name": "test_remote_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 72, "end_line": 86, "span_ids": ["test_walk_files"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"remote\", remotes, indirect=True)\ndef test_walk_files(remote):\n    files = [\n        remote.tree.path_info / \"data/alice\",\n        remote.tree.path_info / \"data/alpha\",\n        remote.tree.path_info / \"data/subdir-file.txt\",\n        remote.tree.path_info / \"data/subdir/1\",\n        remote.tree.path_info / \"data/subdir/2\",\n        remote.tree.path_info / \"data/subdir/3\",\n        remote.tree.path_info / \"data/subdir/empty_file\",\n    ]\n\n    assert (\n        list(remote.tree.walk_files(remote.tree.path_info / \"data\")) == files\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_diff.py_pytest_test_revisions.assert__revisions_mock_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_diff.py_pytest_test_revisions.assert__revisions_mock_re", "embedding": null, "metadata": {"file_path": "tests/unit/repo/plots/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 19, "span_ids": ["imports", "test_revisions"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.repo.plots.diff import _revisions\n\n\n@pytest.mark.parametrize(\n    \"arg_revisions,is_dirty,expected_revisions\",\n    [\n        ([], False, [\"workspace\"]),\n        ([], True, [\"HEAD\", \"workspace\"]),\n        ([\"v1\", \"v2\", \"workspace\"], False, [\"v1\", \"v2\", \"workspace\"]),\n        ([\"v1\", \"v2\", \"workspace\"], True, [\"v1\", \"v2\", \"workspace\"]),\n    ],\n)\ndef test_revisions(mocker, arg_revisions, is_dirty, expected_revisions):\n    mock_scm = mocker.Mock()\n    mock_scm.configure_mock(**{\"is_dirty.return_value\": is_dirty})\n    mock_repo = mocker.Mock(scm=mock_scm)\n    assert _revisions(mock_repo, arg_revisions, False) == expected_revisions", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_diff.py_test_revisions_experiment_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/plots/test_diff.py_test_revisions_experiment_", "embedding": null, "metadata": {"file_path": "tests/unit/repo/plots/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 22, "end_line": 40, "span_ids": ["test_revisions_experiment"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"arg_revisions,baseline,expected_revisions\",\n    [\n        ([\"v1\"], \"v0\", [\"v1\", \"v0\"]),\n        ([\"v1\"], None, [\"v1\", \"workspace\"]),\n        ([\"v1\", \"v2\"], \"v0\", [\"v1\", \"v2\"]),\n        ([\"v1\", \"v2\"], None, [\"v1\", \"v2\"]),\n    ],\n)\ndef test_revisions_experiment(\n    mocker, arg_revisions, baseline, expected_revisions\n):\n    mock_scm = mocker.Mock()\n    mock_scm.configure_mock(**{\"is_dirty.return_value\": False})\n    mock_experiments = mocker.Mock()\n    mock_experiments.configure_mock(**{\"get_baseline.return_value\": baseline})\n    mock_repo = mocker.Mock(scm=mock_scm, experiments=mock_experiments)\n    assert _revisions(mock_repo, arg_revisions, True) == expected_revisions", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_test_used_cache_test_used_cache.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_test_used_cache_test_used_cache.assert_", "embedding": null, "metadata": {"file_path": "tests/unit/repo/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 33, "end_line": 57, "span_ids": ["test_used_cache"], "tokens": 228}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"path\",\n    [os.path.join(\"dir\", \"subdir\", \"file\"), os.path.join(\"dir\", \"subdir\")],\n)\ndef test_used_cache(tmp_dir, dvc, path):\n    from dvc.cache import NamedCache\n\n    tmp_dir.dvc_gen({\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}})\n    expected = NamedCache.make(\n        \"local\", \"70922d6bf66eb073053a82f77d58c536.dir\", \"dir\"\n    )\n    expected.add_child_cache(\n        \"70922d6bf66eb073053a82f77d58c536.dir\",\n        NamedCache.make(\n            \"local\",\n            \"8c7dd922ad47494fc02c388e12c00eac\",\n            os.path.join(\"dir\", \"subdir\", \"file\"),\n        ),\n    )\n\n    used_cache = dvc.used_cache([path])\n    assert (\n        used_cache._items == expected._items\n        and used_cache.external == expected.external\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_test_branch_config_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_test_branch_config_", "embedding": null, "metadata": {"file_path": "tests/unit/repo/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 133, "end_line": 155, "span_ids": ["test_branch_config"], "tokens": 169}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_branch_config(tmp_dir, scm):\n    tmp_dir.scm_gen(\"foo\", \"foo\", commit=\"init\")\n\n    scm.checkout(\"branch\", create_new=True)\n    dvc = Repo.init()\n    with dvc.config.edit() as conf:\n        conf[\"remote\"][\"branch\"] = {\"url\": \"/some/path\"}\n    scm.add([\".dvc\"])\n    scm.commit(\"init dvc\")\n    scm.checkout(\"master\")\n\n    remove(\".dvc\")\n\n    # sanity check\n    with pytest.raises(NotDvcRepoError):\n        Repo()\n\n    with pytest.raises(NotDvcRepoError):\n        Repo(scm=scm, rev=\"master\")\n\n    dvc = Repo(scm=scm, rev=\"branch\")\n    assert dvc.config[\"remote\"][\"branch\"][\"url\"] == \"/some/path\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_scm.py_from_unittest_import_Test_TestScmContext.test_should_successfully_perform_method.self_assertEqual_0_self_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_scm.py_from_unittest_import_Test_TestScmContext.test_should_successfully_perform_method.self_assertEqual_0_self_", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 27, "span_ids": ["TestScmContext.test_should_successfully_perform_method", "imports", "TestScmContext", "TestScmContext.setUp"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from unittest import TestCase\n\nimport mock\n\nfrom dvc.repo import Repo\nfrom dvc.repo.scm_context import scm_context\nfrom dvc.scm import NoSCM\n\n\nclass TestScmContext(TestCase):\n    def setUp(self):\n        self.repo_mock = mock.Mock(spec=Repo)\n        self.scm_mock = mock.Mock(spec=NoSCM)\n        self.repo_mock.scm = self.scm_mock\n\n    def test_should_successfully_perform_method(self):\n        method = mock.Mock()\n        wrapped = scm_context(method)\n\n        self.repo_mock.configure_mock(config={})\n        wrapped(self.repo_mock)\n\n        self.assertEqual(1, method.call_count)\n        self.assertEqual(1, self.scm_mock.reset_ignores.call_count)\n        self.assertEqual(1, self.scm_mock.remind_to_track.call_count)\n\n        self.assertEqual(0, self.scm_mock.cleanup_ignores.call_count)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_scm.py_TestScmContext.test_should_check_autostage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_scm.py_TestScmContext.test_should_check_autostage_", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 29, "end_line": 61, "span_ids": ["test_remind_to_track", "TestScmContext.test_should_check_autostage", "TestScmContext.test_should_throw_and_cleanup"], "tokens": 291}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestScmContext(TestCase):\n\n    def test_should_check_autostage(self):\n        method = mock.Mock()\n        wrapped = scm_context(method)\n\n        config_autostage_attrs = {\"config\": {\"core\": {\"autostage\": True}}}\n        self.repo_mock.configure_mock(**config_autostage_attrs)\n        wrapped(self.repo_mock)\n\n        self.assertEqual(1, method.call_count)\n        self.assertEqual(1, self.scm_mock.reset_ignores.call_count)\n        self.assertEqual(1, self.scm_mock.track_changed_files.call_count)\n\n        self.assertEqual(0, self.scm_mock.cleanup_ignores.call_count)\n\n    def test_should_throw_and_cleanup(self):\n        method = mock.Mock(side_effect=Exception(\"some problem\"))\n        wrapped = scm_context(method)\n\n        with self.assertRaises(Exception):\n            wrapped(self.repo_mock)\n\n        self.assertEqual(1, method.call_count)\n        self.assertEqual(1, self.scm_mock.cleanup_ignores.call_count)\n\n        self.assertEqual(0, self.scm_mock.reset_ignores.call_count)\n        self.assertEqual(0, self.scm_mock.remind_to_track.call_count)\n\n\ndef test_remind_to_track(scm, caplog):\n    scm.files_to_track = [\"fname with spaces.txt\", \"\u0442\u0435\u0441\u0442\", \"foo\"]\n    scm.remind_to_track()\n    assert \"git add 'fname with spaces.txt' '\u0442\u0435\u0441\u0442' foo\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_stage_cache_wdir_test_stage_cache_wdir.None_11": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_stage_cache_wdir_test_stage_cache_wdir.None_11", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 109, "end_line": 160, "span_ids": ["test_stage_cache_wdir"], "tokens": 496}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_cache_wdir(tmp_dir, dvc, mocker):\n    tmp_dir.gen(\"dep\", \"dep\")\n    tmp_dir.gen(\n        \"script.py\",\n        (\n            'open(\"out\", \"w+\").write(\"out\"); '\n            'open(\"out_no_cache\", \"w+\").write(\"out_no_cache\")'\n        ),\n    )\n    tmp_dir.gen({\"wdir\": {}})\n    stage = dvc.run(\n        cmd=\"python ../script.py\",\n        deps=[\"../script.py\", \"../dep\"],\n        outs=[\"out\"],\n        outs_no_cache=[\"out_no_cache\"],\n        single_stage=True,\n        wdir=\"wdir\",\n    )\n\n    with dvc.lock, dvc.state:\n        stage.remove(remove_outs=True, force=True)\n\n    assert not (tmp_dir / \"wdir\" / \"out\").exists()\n    assert not (tmp_dir / \"wdir\" / \"out_no_cache\").exists()\n    assert not (tmp_dir / \"wdir\" / \"out.dvc\").exists()\n\n    cache_dir = os.path.join(\n        dvc.stage_cache.cache_dir,\n        \"d2\",\n        \"d2b5da199f4da73a861027f5f76020a948794011db9704814fdb2a488ca93ec2\",\n    )\n    cache_file = os.path.join(\n        cache_dir,\n        \"65cc63ade5ab338541726b26185ebaf42331141ec3a670a7d6e8a227505afade\",\n    )\n\n    assert os.path.isdir(cache_dir)\n    assert os.listdir(cache_dir) == [os.path.basename(cache_file)]\n    assert os.path.isfile(cache_file)\n\n    run_spy = mocker.patch(\"dvc.stage.run.cmd_run\")\n    checkout_spy = mocker.spy(dvc.cache.local, \"checkout\")\n    with dvc.lock, dvc.state:\n        stage.run()\n\n    assert not run_spy.called\n    assert checkout_spy.call_count == 2\n\n    assert (tmp_dir / \"wdir\" / \"out\").exists()\n    assert (tmp_dir / \"wdir\" / \"out_no_cache\").exists()\n    assert (tmp_dir / \"wdir\" / \"out\").read_text() == \"out\"\n    assert (tmp_dir / \"wdir\" / \"out_no_cache\").read_text() == \"out_no_cache\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_deps_outs_test_fill_from_lock_deps_outs.assert_stage_outs_0_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_deps_outs_test_fill_from_lock_deps_outs.assert_stage_outs_0_hash", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 28, "end_line": 39, "span_ids": ["test_fill_from_lock_deps_outs"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_deps_outs(dvc, lock_data):\n    stage = create_stage(\n        PipelineStage, dvc, PIPELINE_FILE, deps=[\"foo\"], outs=[\"bar\"]\n    )\n\n    for item in chain(stage.deps, stage.outs):\n        assert not item.hash_info\n\n    StageLoader.fill_from_lock(stage, lock_data)\n\n    assert stage.deps[0].hash_info == HashInfo(\"md5\", \"foo_checksum\")\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_params_test_fill_from_lock_params.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_params_test_fill_from_lock_params.assert_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 75, "span_ids": ["test_fill_from_lock_params"], "tokens": 279}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_params(dvc, lock_data):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        PIPELINE_FILE,\n        deps=[\"foo\"],\n        outs=[\"bar\"],\n        params=[\n            \"lorem\",\n            \"lorem.ipsum\",\n            {\"myparams.yaml\": [\"ipsum\", \"foobar\"]},\n        ],\n    )\n    lock_data[\"params\"] = {\n        \"params.yaml\": {\n            \"lorem\": \"lorem\",\n            \"lorem.ipsum\": [\"i\", \"p\", \"s\", \"u\", \"m\"],\n        },\n        \"myparams.yaml\": {\n            # missing value in lock for `foobar` params\n            \"ipsum\": \"ipsum\"\n        },\n    }\n    params_deps = split_params_deps(stage)[0]\n    assert set(params_deps[0].params) == {\"lorem\", \"lorem.ipsum\"}\n    assert set(params_deps[1].params) == {\"ipsum\", \"foobar\"}\n    assert not params_deps[0].hash_info\n    assert not params_deps[1].hash_info\n\n    StageLoader.fill_from_lock(stage, lock_data)\n    assert params_deps[0].hash_info.value == lock_data[\"params\"][\"params.yaml\"]\n    assert (\n        params_deps[1].hash_info.value == lock_data[\"params\"][\"myparams.yaml\"]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_use_appropriate_checksum_test_fill_from_lock_use_appropriate_checksum.assert_stage_outs_0_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_use_appropriate_checksum_test_fill_from_lock_use_appropriate_checksum.assert_stage_outs_0_hash", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 108, "end_line": 119, "span_ids": ["test_fill_from_lock_use_appropriate_checksum"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_use_appropriate_checksum(dvc, lock_data):\n    stage = create_stage(\n        PipelineStage,\n        dvc,\n        PIPELINE_FILE,\n        deps=[\"s3://dvc-temp/foo\"],\n        outs=[\"bar\"],\n    )\n    lock_data[\"deps\"] = [{\"path\": \"s3://dvc-temp/foo\", \"etag\": \"e-tag\"}]\n    StageLoader.fill_from_lock(stage, lock_data)\n    assert stage.deps[0].hash_info == HashInfo(\"etag\", \"e-tag\")\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_test_load_stage.assert_stage_outs_0_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_test_load_stage.assert_stage_outs_0_hash", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 149, "end_line": 160, "span_ids": ["test_load_stage"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_stage(dvc, stage_data, lock_data):\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n\n    assert stage.wdir == os.path.abspath(os.curdir)\n    assert stage.name == \"stage-1\"\n    assert stage.cmd == \"command\"\n    assert stage.path == os.path.abspath(PIPELINE_FILE)\n    assert stage.deps[0].def_path == \"foo\"\n    assert stage.deps[0].hash_info == HashInfo(\"md5\", \"foo_checksum\")\n    assert stage.outs[0].def_path == \"bar\"\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_with_params_test_load_stage_with_params.assert_stage_outs_0_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_with_params_test_load_stage_with_params.assert_stage_outs_0_hash", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 178, "end_line": 189, "span_ids": ["test_load_stage_with_params"], "tokens": 192}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_stage_with_params(dvc, stage_data, lock_data):\n    lock_data[\"params\"] = {\"params.yaml\": {\"lorem\": \"ipsum\"}}\n    stage_data[\"params\"] = [\"lorem\"]\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n\n    params, deps = split_params_deps(stage)\n    assert deps[0].def_path == \"foo\" and stage.outs[0].def_path == \"bar\"\n    assert params[0].def_path == \"params.yaml\"\n    assert params[0].hash_info == HashInfo(\"params\", {\"lorem\": \"ipsum\"})\n    assert deps[0].hash_info == HashInfo(\"md5\", \"foo_checksum\")\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_with_metrics_and_plots_test_load_stage_with_metrics_and_plots.assert_stage_outs_0_hash": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_with_metrics_and_plots_test_load_stage_with_metrics_and_plots.assert_stage_outs_0_hash", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 192, "end_line": 199, "span_ids": ["test_load_stage_with_metrics_and_plots"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"typ\", [\"metrics\", \"plots\"])\ndef test_load_stage_with_metrics_and_plots(dvc, stage_data, lock_data, typ):\n    stage_data[typ] = stage_data.pop(\"outs\")\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n\n    assert stage.outs[0].def_path == \"bar\"\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"bar_checksum\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_dump_nondefault_hash_test_dump_nondefault_hash.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_dump_nondefault_hash_test_dump_nondefault_hash.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 156, "end_line": 173, "span_ids": ["test_dump_nondefault_hash"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dump_nondefault_hash(dvc):\n    stage = create_stage(\n        PipelineStage, dvc, deps=[\"s3://dvc-temp/file\"], **kwargs\n    )\n    stage.deps[0].hash_info = HashInfo(\"md5\", \"value\")\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\n                \"deps\",\n                [\n                    OrderedDict(\n                        [(\"path\", \"s3://dvc-temp/file\"), (\"md5\", \"value\")]\n                    )\n                ],\n            ),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_config.py_os_test_to_relpath.assert_Config__to_relpath": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_config.py_os_test_to_relpath.assert_Config__to_relpath", "embedding": null, "metadata": {"file_path": "tests/unit/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 19, "span_ids": ["imports", "test_to_relpath"], "tokens": 110}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.config import Config\nfrom dvc.tree.local import LocalTree\n\n\n@pytest.mark.parametrize(\n    \"path, expected\",\n    [\n        (\"cache\", \"../cache\"),\n        (os.path.join(\"..\", \"cache\"), \"../../cache\"),\n        (os.getcwd(), os.getcwd().replace(\"\\\\\", \"/\")),\n        (\"ssh://some/path\", \"ssh://some/path\"),\n    ],\n)\ndef test_to_relpath(path, expected):\n    assert Config._to_relpath(os.path.join(\".\", \"config\"), path) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_config.py_test_get_tree_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_config.py_test_get_tree_", "embedding": null, "metadata": {"file_path": "tests/unit/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 22, "end_line": 36, "span_ids": ["test_get_tree"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_tree(tmp_dir, scm):\n    tmp_dir.scm_gen(\"foo\", \"foo\", commit=\"add foo\")\n\n    tree = scm.get_tree(\"master\")\n    config = Config(tree=tree)\n\n    assert config.tree == tree\n    assert config.wtree != tree\n    assert isinstance(config.wtree, LocalTree)\n\n    assert config._get_tree(\"repo\") == tree\n    assert config._get_tree(\"local\") == config.wtree\n    assert config._get_tree(\"global\") == config.wtree\n    assert config._get_tree(\"system\") == config.wtree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_external_repo.py_os_test_hook_is_called.with_external_repo_str_er.spy_assert_has_calls_cal": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_external_repo.py_os_test_hook_is_called.with_external_repo_str_er.spy_assert_has_calls_cal", "embedding": null, "metadata": {"file_path": "tests/unit/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 35, "span_ids": ["imports", "test_hook_is_called"], "tokens": 291}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom unittest.mock import call\n\nimport pytest\n\nfrom dvc.external_repo import external_repo\nfrom tests.unit.tree.test_repo import make_subrepo\n\n\ndef test_hook_is_called(tmp_dir, erepo_dir, mocker):\n    subrepo_paths = [\n        \"subrepo1\",\n        \"subrepo2\",\n        os.path.join(\"dir\", \"subrepo3\"),\n        os.path.join(\"dir\", \"subrepo4\"),\n        \"subrepo5\",\n        os.path.join(\"subrepo5\", \"subrepo6\"),\n    ]\n    subrepos = [erepo_dir / path for path in subrepo_paths]\n    for repo in subrepos:\n        make_subrepo(repo, erepo_dir.scm)\n\n    for repo in subrepos + [erepo_dir]:\n        with repo.chdir():\n            repo.scm_gen(\"foo\", \"foo\", commit=f\"git add {repo}/foo\")\n            repo.dvc_gen(\"bar\", \"bar\", commit=f\"dvc add {repo}/bar\")\n\n    with external_repo(str(erepo_dir)) as repo:\n        spy = mocker.spy(repo, \"make_repo\")\n\n        list(repo.repo_tree.walk(repo.root_dir))  # drain\n        assert spy.call_count == len(subrepos)\n\n        paths = [os.path.join(repo.root_dir, path) for path in subrepo_paths]\n        spy.assert_has_calls([call(path) for path in paths], any_order=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_os_PYTHON_VERSION_REGEX.r_Python_d_d_d_S_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_os_PYTHON_VERSION_REGEX.r_Python_d_d_d_S_", "embedding": null, "metadata": {"file_path": "tests/unit/test_info.py", "file_name": "test_info.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 13, "span_ids": ["imports"], "tokens": 106}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport re\nimport shutil\n\nimport pytest\n\nfrom dvc.info import get_dvc_info, psutil\n\n# Python's version is in the shape of:\n# <major>.<minor>.<patch>[{a|b|rc}N][.postN][.devN]\n# `patch` is more than enough for the tests.\n# Refer PEP-0440 for complete regex just in-case.\nPYTHON_VERSION_REGEX = r\"Python \\d\\.\\d+\\.\\d+\\S*\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_info_in_repo_test_info_in_repo.if_scm_init_.else_.assert_Repo_dvc_no_scm": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_info_in_repo_test_info_in_repo.if_scm_init_.else_.assert_Repo_dvc_no_scm", "embedding": null, "metadata": {"file_path": "tests/unit/test_info.py", "file_name": "test_info.py", "file_type": "text/x-python", "category": "test", "start_line": 16, "end_line": 32, "span_ids": ["test_info_in_repo"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"scm_init\", [True, False])\ndef test_info_in_repo(scm_init, tmp_dir):\n    tmp_dir.init(scm=scm_init, dvc=True)\n    # Create `.dvc/cache`, that is needed to check supported link types.\n    os.mkdir(tmp_dir.dvc.cache.local.cache_dir)\n\n    dvc_info = get_dvc_info()\n\n    assert re.search(r\"DVC version: \\d+\\.\\d+\\.\\d+.*\", dvc_info)\n    assert re.search(f\"Platform: {PYTHON_VERSION_REGEX} on .*\", dvc_info)\n    assert re.search(r\"Supports: .*\", dvc_info)\n    assert re.search(r\"Cache types: .*\", dvc_info)\n\n    if scm_init:\n        assert \"Repo: dvc, git\" in dvc_info\n    else:\n        assert \"Repo: dvc (no_scm)\" in dvc_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_info_outside_of_repo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_info_outside_of_repo_", "embedding": null, "metadata": {"file_path": "tests/unit/test_info.py", "file_name": "test_info.py", "file_type": "text/x-python", "category": "test", "start_line": 65, "end_line": 81, "span_ids": ["test_info_outside_of_repo", "test_fs_info_outside_of_repo"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_info_outside_of_repo(tmp_dir, caplog):\n    dvc_info = get_dvc_info()\n\n    assert re.search(r\"DVC version: \\d+\\.\\d+\\.\\d+.*\", dvc_info)\n    assert re.search(f\"Platform: {PYTHON_VERSION_REGEX} on .*\", dvc_info)\n    assert re.search(r\"Supports: .*\", dvc_info)\n    assert not re.search(r\"Cache types: .*\", dvc_info)\n    assert \"Repo:\" not in dvc_info\n\n\n@pytest.mark.skipif(psutil is None, reason=\"No psutil.\")\ndef test_fs_info_outside_of_repo(tmp_dir, caplog):\n    dvc_info = get_dvc_info()\n    assert re.search(r\"DVC version: \\d+\\.\\d+\\.\\d+.*\", dvc_info)\n    assert re.search(f\"Platform: {PYTHON_VERSION_REGEX} on .*\", dvc_info)\n    assert re.search(r\"Supports: .*\", dvc_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_pytest_test_stage_dump_no_outs_deps.assert_lockfile_load_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_pytest_test_stage_dump_no_outs_deps.assert_lockfile_load_", "embedding": null, "metadata": {"file_path": "tests/unit/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 12, "span_ids": ["imports", "test_stage_dump_no_outs_deps"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.dvcfile import Lockfile, LockfileCorruptedError\nfrom dvc.stage import PipelineStage\nfrom dvc.utils.serialize import dump_yaml\n\n\ndef test_stage_dump_no_outs_deps(tmp_dir, dvc):\n    stage = PipelineStage(name=\"s1\", repo=dvc, path=\"path\", cmd=\"command\")\n    lockfile = Lockfile(dvc, \"path.lock\")\n    lockfile.dump(stage)\n    assert lockfile.load() == {\"s1\": {\"cmd\": \"command\"}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_stage_dump_when_already_exists_test_stage_dump_when_already_exists.assert_lockfile_load_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_lockfile.py_test_stage_dump_when_already_exists_test_stage_dump_when_already_exists.assert_lockfile_load_", "embedding": null, "metadata": {"file_path": "tests/unit/test_lockfile.py", "file_name": "test_lockfile.py", "file_type": "text/x-python", "category": "test", "start_line": 15, "end_line": 24, "span_ids": ["test_stage_dump_when_already_exists"], "tokens": 112}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_dump_when_already_exists(tmp_dir, dvc):\n    data = {\"s1\": {\"cmd\": \"command\", \"deps\": [], \"outs\": []}}\n    dump_yaml(\"path.lock\", data)\n    stage = PipelineStage(name=\"s2\", repo=dvc, path=\"path\", cmd=\"command2\")\n    lockfile = Lockfile(dvc, \"path.lock\")\n    lockfile.dump(stage)\n    assert lockfile.load() == {\n        **data,\n        \"s2\": {\"cmd\": \"command2\"},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_pathspec_math.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_pathspec_math.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/test_pathspec_math.py", "file_name": "test_pathspec_math.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 75, "span_ids": ["test_dvcignore_pattern_change_dir", "imports"], "tokens": 967}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.pathspec_math import PatternInfo, _change_dirname\n\n\n@pytest.mark.parametrize(\n    \"patterns, dirname, changed\",\n    [\n        # A line starting with # serves as a comment.\n        (\"#comment\", \"/dir\", \"#comment\"),\n        # Put a backslash (\"\\\") in front of the first hash for patterns that\n        # begin with a hash.\n        (\"\\\\#hash\", \"/dir\", \"/dir/**/#hash\"),\n        (\"\\\\#hash\", \"/#dir\", \"/#dir/**/#hash\"),\n        # Trailing spaces are ignored unless they are quoted with\n        # backslash (\"\\\").\n        (\" space\", \"/dir\", \"/dir/**/space\"),\n        (\"\\\\ space\", \"/dir\", \"/dir/**/ space\"),\n        # An optional prefix \"!\" which negates the pattern;\n        (\"!include\", \"/dir\", \"!/dir/**/include\"),\n        # Put a backslash (\"\\\") in front of the first \"!\" for patterns that\n        # begin with a literal \"!\", for example, \"\\!important!.txt\".\n        (\"\\\\!important!.txt\", \"/dir\", \"/dir/**/!important!.txt\"),\n        # If there is a separator at the beginning or middle (or both) of the\n        # pattern, then the pattern is relative to the directory level of the\n        # particular .gitignore file itself.\n        (\"/separator.txt\", \"/dir\", \"/dir/separator.txt\"),\n        (\"subdir/separator.txt\", \"/dir\", \"/dir/subdir/separator.txt\"),\n        # Otherwise the pattern may also match at any level below\n        # the .gitignore level.\n        (\"no_sep\", \"/dir\", \"/dir/**/no_sep\"),\n        # If there is a separator at the end of the pattern then the pattern\n        # will only match directories, otherwise the pattern can match both\n        # files and directories.\n        (\"doc/fortz/\", \"/dir\", \"/dir/doc/fortz/\"),\n        (\"fortz/\", \"/dir\", \"/dir/**/fortz/\"),\n        # An asterisk \"*\" matches anything except a slash.\n        (\"*aste*risk*\", \"/dir\", \"/dir/**/*aste*risk*\"),\n        # The character \"?\" matches any one character except \"/\".\n        (\"?fi?le?\", \"/dir\", \"/dir/**/?fi?le?\"),\n        # The range notation, e.g. [a-zA-Z], can be used to match one of the\n        # characters in a range. See fnmatch(3) and the FNM_PATHNAME flag\n        # for a more detailed description.\n        (\"[a-zA-Z]file[a-zA-Z]\", \"/dir\", \"/dir/**/[a-zA-Z]file[a-zA-Z]\"),\n        # Two consecutive asterisks (\"**\") in patterns matched against full\n        # pathname may have special meaning:\n        # A leading \"**\" followed by a slash means match in all directories.\n        # For example, \"**/foo\" matches file or directory \"foo\" anywhere,\n        # the same as pattern \"foo\".\n        (\"**/foo\", \"/dir\", \"/dir/**/foo\"),\n        # \"**/foo/bar\" matches file or directory \"bar\" anywhere that is\n        # directly under directory \"foo\".\n        (\"**/foo/bar\", \"/dir\", \"/dir/**/foo/bar\"),\n        # A trailing \"/**\" matches everything inside.\n        # For example, \"abc/**\" matches all files inside directory \"abc\",\n        # relative to the location of the .gitignore file, with infinite depth.\n        (\"abc/**\", \"/dir\", \"/dir/abc/**\"),\n        # A slash followed by two consecutive asterisks then a slash matches\n        # zero or more directories. For example, \"a/**/b\"\n        # matches \"a/b\", \"a/x/b\", \"a/x/y/b\" and so on.\n        (\"a/**/b\", \"/dir\", \"/dir/a/**/b\"),\n        # Other consecutive asterisks are considered regular asterisks and\n        # will match according to the previous rules.\n        (\"/***.txt\", \"/dir\", \"/dir/***.txt\"),\n        (\"data/***\", \"/dir\", \"/dir/data/***\"),\n        (\"***/file.txt\", \"/dir\", \"/dir/***/file.txt\"),\n        (\"***file\", \"/dir\", \"/dir/**/***file\"),\n        (\"a/***/b\", \"/dir\", \"/dir/a/***/b\"),\n    ],\n)\ndef test_dvcignore_pattern_change_dir(tmp_dir, patterns, dirname, changed):\n    assert _change_dirname(dirname, [PatternInfo(patterns, \"\")], \"/\") == [\n        PatternInfo(changed, \"\")\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_is_enabled_test_check_update_respect_config.assert_result_mock_che": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_updater.py_test_is_enabled_test_check_update_respect_config.assert_result_mock_che", "embedding": null, "metadata": {"file_path": "tests/unit/test_updater.py", "file_name": "test_updater.py", "file_type": "text/x-python", "category": "test", "start_line": 47, "end_line": 66, "span_ids": ["test_check_update_respect_config", "test_is_enabled"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"core, result\",\n    [\n        ({}, True),\n        ({\"check_update\": \"true\"}, True),\n        ({\"check_update\": \"false\"}, False),\n    ],\n)\ndef test_is_enabled(dvc, updater, core, result):\n    with dvc.config.edit(\"local\") as conf:\n        conf[\"core\"] = core\n    assert result == updater.is_enabled()\n\n\n@pytest.mark.parametrize(\"result\", [True, False])\n@mock.patch(\"dvc.updater.Updater._check\")\ndef test_check_update_respect_config(mock_check, result, updater, mocker):\n    mocker.patch.object(updater, \"is_enabled\", return_value=result)\n    updater.check()\n    assert result == mock_check.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_os_test_open_dirty_no_hash.with_pytest_raises_FileNo.with_tree_open_file_r.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_os_test_open_dirty_no_hash.with_pytest_raises_FileNo.with_tree_open_file_r.pass", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 50, "span_ids": ["test_open_dirty_no_hash", "imports", "test_open_dirty_hash", "test_exists", "test_open"], "tokens": 346}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport shutil\n\nimport pytest\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.tree.dvc import DvcTree\n\n\ndef test_exists(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.add(\"foo\")\n    (tmp_dir / \"foo\").unlink()\n\n    tree = DvcTree(dvc)\n    assert tree.exists(\"foo\")\n\n\ndef test_open(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.add(\"foo\")\n    (tmp_dir / \"foo\").unlink()\n\n    tree = DvcTree(dvc)\n    with tree.open(\"foo\", \"r\") as fobj:\n        assert fobj.read() == \"foo\"\n\n\ndef test_open_dirty_hash(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"file\", \"file\")\n    (tmp_dir / \"file\").write_text(\"something\")\n\n    tree = DvcTree(dvc)\n    with tree.open(\"file\", \"r\") as fobj:\n        # NOTE: Unlike RepoTree, DvcTree should not\n        # be affected by a dirty workspace.\n        assert fobj.read() == \"file\"\n\n\ndef test_open_dirty_no_hash(tmp_dir, dvc):\n    tmp_dir.gen(\"file\", \"file\")\n    (tmp_dir / \"file.dvc\").write_text(\"outs:\\n- path: file\\n\")\n\n    tree = DvcTree(dvc)\n    # NOTE: Unlike RepoTree, DvcTree should not\n    # be affected by a dirty workspace.\n    with pytest.raises(FileNotFoundError):\n        with tree.open(\"file\", \"r\"):\n            pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_open_in_history_test_open_in_history.for_rev_in_dvc_brancher_r.with_tree_open_foo_r_.assert_fobj_read_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_open_in_history_test_open_in_history.for_rev_in_dvc_brancher_r.with_tree_open_foo_r_.assert_fobj_read_fo", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 53, "end_line": 70, "span_ids": ["test_open_in_history"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_open_in_history(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.add(\"foo\")\n    dvc.scm.add([\"foo.dvc\", \".gitignore\"])\n    dvc.scm.commit(\"foo\")\n\n    tmp_dir.gen(\"foo\", \"foofoo\")\n    dvc.add(\"foo\")\n    dvc.scm.add([\"foo.dvc\", \".gitignore\"])\n    dvc.scm.commit(\"foofoo\")\n\n    for rev in dvc.brancher(revs=[\"HEAD~1\"]):\n        if rev == \"workspace\":\n            continue\n\n        tree = DvcTree(dvc)\n        with tree.open(\"foo\", \"r\") as fobj:\n            assert fobj.read() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_isdir_isfile_test_isdir_mixed.assert_not_tree_isfile_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_isdir_isfile_test_isdir_mixed.assert_not_tree_isfile_d", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 73, "end_line": 99, "span_ids": ["test_isdir_isfile", "test_isdir_mixed"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_isdir_isfile(tmp_dir, dvc):\n    tmp_dir.gen({\"datafile\": \"data\", \"datadir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n\n    tree = DvcTree(dvc)\n    assert not tree.isdir(\"datadir\")\n    assert not tree.isfile(\"datadir\")\n    assert not tree.isdir(\"datafile\")\n    assert not tree.isfile(\"datafile\")\n\n    dvc.add([\"datadir\", \"datafile\"])\n    shutil.rmtree(tmp_dir / \"datadir\")\n    (tmp_dir / \"datafile\").unlink()\n\n    assert tree.isdir(\"datadir\")\n    assert not tree.isfile(\"datadir\")\n    assert not tree.isdir(\"datafile\")\n    assert tree.isfile(\"datafile\")\n\n\ndef test_isdir_mixed(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n\n    dvc.add(str(tmp_dir / \"dir\" / \"foo\"))\n\n    tree = DvcTree(dvc)\n    assert tree.isdir(\"dir\")\n    assert not tree.isfile(\"dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_walk_test_walk.assert_len_actual_len": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_walk_test_walk.assert_len_actual_len", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 102, "end_line": 133, "span_ids": ["test_walk"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk(tmp_dir, dvc):\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"subdir1\": {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n                \"subdir2\": {\"foo2\": \"foo2\"},\n                \"foo\": \"foo\",\n                \"bar\": \"bar\",\n            }\n        }\n    )\n\n    dvc.add(\"dir\", recursive=True)\n    tree = DvcTree(dvc)\n\n    expected = [\n        str(tmp_dir / \"dir\" / \"subdir1\"),\n        str(tmp_dir / \"dir\" / \"subdir2\"),\n        str(tmp_dir / \"dir\" / \"subdir1\" / \"foo1\"),\n        str(tmp_dir / \"dir\" / \"subdir1\" / \"bar1\"),\n        str(tmp_dir / \"dir\" / \"subdir2\" / \"foo2\"),\n        str(tmp_dir / \"dir\" / \"foo\"),\n        str(tmp_dir / \"dir\" / \"bar\"),\n    ]\n\n    actual = []\n    for root, dirs, files in tree.walk(\"dir\"):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_walk_dir_test_walk_dir.assert_len_actual_len": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_walk_dir_test_walk_dir.assert_len_actual_len", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 136, "end_line": 177, "span_ids": ["test_walk_dir"], "tokens": 296}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"fetch,expected\",\n    [\n        (False, []),\n        (\n            True,\n            [\n                PathInfo(\"dir\") / \"subdir1\",\n                PathInfo(\"dir\") / \"subdir2\",\n                PathInfo(\"dir\") / \"subdir1\" / \"foo1\",\n                PathInfo(\"dir\") / \"subdir1\" / \"bar1\",\n                PathInfo(\"dir\") / \"subdir2\" / \"foo2\",\n                PathInfo(\"dir\") / \"foo\",\n                PathInfo(\"dir\") / \"bar\",\n            ],\n        ),\n    ],\n)\ndef test_walk_dir(tmp_dir, dvc, fetch, expected):\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"subdir1\": {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n                \"subdir2\": {\"foo2\": \"foo2\"},\n                \"foo\": \"foo\",\n                \"bar\": \"bar\",\n            }\n        }\n    )\n\n    dvc.add(\"dir\")\n    tree = DvcTree(dvc, fetch=fetch)\n\n    expected = [str(tmp_dir / path) for path in expected]\n\n    actual = []\n    for root, dirs, files in tree.walk(\"dir\"):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_walk_onerror_test_walk_onerror.None_3.for___in_tree_walk_foo_.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_walk_onerror_test_walk_onerror.None_3.for___in_tree_walk_foo_.pass", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 180, "end_line": 199, "span_ids": ["test_walk_onerror"], "tokens": 130}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_onerror(tmp_dir, dvc):\n    def onerror(exc):\n        raise exc\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    tree = DvcTree(dvc)\n\n    # path does not exist\n    for _ in tree.walk(\"dir\"):\n        pass\n    with pytest.raises(OSError):\n        for _ in tree.walk(\"dir\", onerror=onerror):\n            pass\n\n    # path is not a directory\n    for _ in tree.walk(\"foo\"):\n        pass\n    with pytest.raises(OSError):\n        for _ in tree.walk(\"foo\", onerror=onerror):\n            pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_isdvc_test_get_hash_file.assert_tree_get_hash_Path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_isdvc_test_get_hash_file.assert_tree_get_hash_Path", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 202, "end_line": 215, "span_ids": ["test_isdvc", "test_get_hash_file"], "tokens": 140}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_isdvc(tmp_dir, dvc):\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n    dvc.add(\"foo\")\n    tree = DvcTree(dvc)\n    assert tree.isdvc(\"foo\")\n    assert not tree.isdvc(\"bar\")\n\n\ndef test_get_hash_file(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"foo\": \"foo\"})\n    tree = DvcTree(dvc)\n    assert tree.get_hash(PathInfo(tmp_dir) / \"foo\") == HashInfo(\n        \"md5\", \"acbd18db4cc2f85cedef654fccc4a4d8\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_get_hash_dir_test_get_hash_dir.assert_not_get_file_hash_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_get_hash_dir_test_get_hash_dir.assert_not_get_file_hash_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 218, "end_line": 227, "span_ids": ["test_get_hash_dir"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_dir(tmp_dir, dvc, mocker):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\", \"subdir\": {\"data\": \"data\"}}}\n    )\n    tree = DvcTree(dvc)\n    get_file_hash_spy = mocker.spy(tree, \"get_file_hash\")\n    assert tree.get_hash(PathInfo(tmp_dir) / \"dir\") == HashInfo(\n        \"md5\", \"8761c4e9acad696bee718615e23e22db.dir\",\n    )\n    assert not get_file_hash_spy.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_get_hash_granular_test_get_hash_granular.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_get_hash_granular_test_get_hash_granular.None_1", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 230, "end_line": 241, "span_ids": ["test_get_hash_granular"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_granular(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\", \"subdir\": {\"data\": \"data\"}}}\n    )\n    tree = DvcTree(dvc, fetch=True)\n    subdir = PathInfo(tmp_dir) / \"dir\" / \"subdir\"\n    assert tree.get_hash(subdir) == HashInfo(\n        \"md5\", \"af314506f1622d107e0ed3f14ec1a3b5.dir\",\n    )\n    assert tree.get_hash(subdir / \"data\") == HashInfo(\n        \"md5\", \"8d777f385d3dfec8815d20f7496026dc\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_get_hash_dirty_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_dvc.py_test_get_hash_dirty_file_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_dvc.py", "file_name": "test_dvc.py", "file_type": "text/x-python", "category": "test", "start_line": 244, "end_line": 263, "span_ids": ["test_get_hash_dirty_file", "test_get_hash_dirty_dir"], "tokens": 208}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_dirty_file(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"file\", \"file\")\n    (tmp_dir / \"file\").write_text(\"something\")\n\n    tree = DvcTree(dvc)\n    actual = tree.get_hash(PathInfo(tmp_dir) / \"file\")\n    expected = HashInfo(\"md5\", \"8c7dd922ad47494fc02c388e12c00eac\")\n    assert actual == expected\n\n\ndef test_get_hash_dirty_dir(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    (tmp_dir / \"dir\" / \"baz\").write_text(\"baz\")\n\n    tree = DvcTree(dvc)\n    actual = tree.get_hash(PathInfo(tmp_dir) / \"dir\")\n    expected = HashInfo(\"md5\", \"5ea40360f5b4ec688df672a4db9c17d1.dir\")\n\n    assert actual == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_os_test_open_dirty_no_hash.with_tree_open_file_r.assert_fobj_read_fi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_os_test_open_dirty_no_hash.with_tree_open_file_r.assert_fobj_read_fi", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 46, "span_ids": ["test_open_dirty_no_hash", "imports", "test_open_dirty_hash", "test_exists", "test_open"], "tokens": 304}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport shutil\nfrom unittest import mock\n\nimport pytest\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.tree.repo import RepoTree\n\n\ndef test_exists(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.add(\"foo\")\n    (tmp_dir / \"foo\").unlink()\n\n    tree = RepoTree(dvc)\n    assert tree.exists(\"foo\")\n\n\ndef test_open(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.add(\"foo\")\n    (tmp_dir / \"foo\").unlink()\n\n    tree = RepoTree(dvc)\n    with tree.open(\"foo\", \"r\") as fobj:\n        assert fobj.read() == \"foo\"\n\n\ndef test_open_dirty_hash(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"file\", \"file\")\n    (tmp_dir / \"file\").write_text(\"something\")\n\n    tree = RepoTree(dvc)\n    with tree.open(\"file\", \"r\") as fobj:\n        assert fobj.read() == \"something\"\n\n\ndef test_open_dirty_no_hash(tmp_dir, dvc):\n    tmp_dir.gen(\"file\", \"file\")\n    (tmp_dir / \"file.dvc\").write_text(\"outs:\\n- path: file\\n\")\n\n    tree = RepoTree(dvc)\n    with tree.open(\"file\", \"r\") as fobj:\n        assert fobj.read() == \"file\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_open_in_history_test_open_in_history.for_rev_in_dvc_brancher_r.with_tree_open_foo_r_.assert_fobj_read_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_open_in_history_test_open_in_history.for_rev_in_dvc_brancher_r.with_tree_open_foo_r_.assert_fobj_read_fo", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 49, "end_line": 66, "span_ids": ["test_open_in_history"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_open_in_history(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.add(\"foo\")\n    dvc.scm.add([\"foo.dvc\", \".gitignore\"])\n    dvc.scm.commit(\"foo\")\n\n    tmp_dir.gen(\"foo\", \"foofoo\")\n    dvc.add(\"foo\")\n    dvc.scm.add([\"foo.dvc\", \".gitignore\"])\n    dvc.scm.commit(\"foofoo\")\n\n    for rev in dvc.brancher(revs=[\"HEAD~1\"]):\n        if rev == \"workspace\":\n            continue\n\n        tree = RepoTree(dvc)\n        with tree.open(\"foo\", \"r\") as fobj:\n            assert fobj.read() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_isdir_isfile_test_isdir_isfile.assert_tree_isdvc_datafi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_isdir_isfile_test_isdir_isfile.assert_tree_isdvc_datafi", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 69, "end_line": 89, "span_ids": ["test_isdir_isfile"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_isdir_isfile(tmp_dir, dvc):\n    tmp_dir.gen({\"datafile\": \"data\", \"datadir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n\n    tree = RepoTree(dvc)\n    assert tree.isdir(\"datadir\")\n    assert not tree.isfile(\"datadir\")\n    assert not tree.isdvc(\"datadir\")\n    assert not tree.isdir(\"datafile\")\n    assert tree.isfile(\"datafile\")\n    assert not tree.isdvc(\"datafile\")\n\n    dvc.add([\"datadir\", \"datafile\"])\n    shutil.rmtree(tmp_dir / \"datadir\")\n    (tmp_dir / \"datafile\").unlink()\n\n    assert tree.isdir(\"datadir\")\n    assert not tree.isfile(\"datadir\")\n    assert tree.isdvc(\"datadir\")\n    assert not tree.isdir(\"datafile\")\n    assert tree.isfile(\"datafile\")\n    assert tree.isdvc(\"datafile\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_exists_isdir_isfile_dirty_test_isdir_mixed.assert_not_tree_isfile_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_exists_isdir_isfile_dirty_test_isdir_mixed.assert_not_tree_isfile_d", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 92, "end_line": 135, "span_ids": ["test_isdir_mixed", "test_exists_isdir_isfile_dirty"], "tokens": 455}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_exists_isdir_isfile_dirty(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\n        {\"datafile\": \"data\", \"datadir\": {\"foo\": \"foo\", \"bar\": \"bar\"}}\n    )\n\n    tree = RepoTree(dvc, stream=True)\n    shutil.rmtree(tmp_dir / \"datadir\")\n    (tmp_dir / \"datafile\").unlink()\n\n    root = PathInfo(tmp_dir)\n    assert tree.exists(root / \"datafile\")\n    assert tree.exists(root / \"datadir\")\n    assert tree.exists(root / \"datadir\" / \"foo\")\n    assert tree.isfile(root / \"datafile\")\n    assert not tree.isfile(root / \"datadir\")\n    assert tree.isfile(root / \"datadir\" / \"foo\")\n    assert not tree.isdir(root / \"datafile\")\n    assert tree.isdir(root / \"datadir\")\n    assert not tree.isdir(root / \"datadir\" / \"foo\")\n\n    # NOTE: creating file instead of dir and dir instead of file\n    tmp_dir.gen({\"datadir\": \"data\", \"datafile\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    assert tree.exists(root / \"datafile\")\n    assert tree.exists(root / \"datadir\")\n    assert not tree.exists(root / \"datadir\" / \"foo\")\n    assert tree.exists(root / \"datafile\" / \"foo\")\n    assert not tree.isfile(root / \"datafile\")\n    assert tree.isfile(root / \"datadir\")\n    assert not tree.isfile(root / \"datadir\" / \"foo\")\n    assert tree.isfile(root / \"datafile\" / \"foo\")\n    assert tree.isdir(root / \"datafile\")\n    assert not tree.isdir(root / \"datadir\")\n    assert not tree.isdir(root / \"datadir\" / \"foo\")\n    assert not tree.isdir(root / \"datafile\" / \"foo\")\n\n\ndef test_isdir_mixed(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n\n    dvc.add(str(tmp_dir / \"dir\" / \"foo\"))\n\n    tree = RepoTree(dvc)\n    assert tree.isdir(\"dir\")\n    assert not tree.isfile(\"dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_test_walk.assert_len_actual_len": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_test_walk.assert_len_actual_len", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 138, "end_line": 182, "span_ids": ["test_walk"], "tokens": 379}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"dvcfiles,extra_expected\",\n    [\n        (False, []),\n        (\n            True,\n            [\n                PathInfo(\"dir\") / \"subdir1\" / \"foo1.dvc\",\n                PathInfo(\"dir\") / \"subdir1\" / \"bar1.dvc\",\n                PathInfo(\"dir\") / \"subdir2\" / \"foo2.dvc\",\n            ],\n        ),\n    ],\n)\ndef test_walk(tmp_dir, dvc, dvcfiles, extra_expected):\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"subdir1\": {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n                \"subdir2\": {\"foo2\": \"foo2\"},\n            }\n        }\n    )\n    dvc.add(str(tmp_dir / \"dir\"), recursive=True)\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    tree = RepoTree(dvc)\n\n    expected = [\n        PathInfo(\"dir\") / \"subdir1\",\n        PathInfo(\"dir\") / \"subdir2\",\n        PathInfo(\"dir\") / \"subdir1\" / \"foo1\",\n        PathInfo(\"dir\") / \"subdir1\" / \"bar1\",\n        PathInfo(\"dir\") / \"subdir2\" / \"foo2\",\n        PathInfo(\"dir\") / \"foo\",\n        PathInfo(\"dir\") / \"bar\",\n    ]\n\n    actual = []\n    for root, dirs, files in tree.walk(\"dir\", dvcfiles=dvcfiles):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    expected = [str(path) for path in expected + extra_expected]\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_dirty_test_walk_dirty.assert_len_actual_len": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_dirty_test_walk_dirty.assert_len_actual_len", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 185, "end_line": 217, "span_ids": ["test_walk_dirty"], "tokens": 307}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_dirty(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\n        {\n            \"dir\": {\n                \"foo\": \"foo\",\n                \"subdir1\": {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n                \"subdir2\": {\"foo2\": \"foo2\"},\n            }\n        }\n    )\n    tmp_dir.gen({\"dir\": {\"bar\": \"bar\", \"subdir3\": {\"foo3\": \"foo3\"}}})\n    (tmp_dir / \"dir\" / \"foo\").unlink()\n\n    tree = RepoTree(dvc)\n    expected = [\n        PathInfo(\"dir\") / \"subdir1\",\n        PathInfo(\"dir\") / \"subdir2\",\n        PathInfo(\"dir\") / \"subdir3\",\n        PathInfo(\"dir\") / \"subdir1\" / \"foo1\",\n        PathInfo(\"dir\") / \"subdir1\" / \"bar1\",\n        PathInfo(\"dir\") / \"subdir2\" / \"foo2\",\n        PathInfo(\"dir\") / \"subdir3\" / \"foo3\",\n        PathInfo(\"dir\") / \"bar\",\n    ]\n\n    actual = []\n    for root, dirs, files in tree.walk(\"dir\"):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    expected = [str(path) for path in expected]\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_dirty_cached_dir_test_walk_dirty_cached_dir.assert_actual_data_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_dirty_cached_dir_test_walk_dirty_cached_dir.assert_actual_data_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 220, "end_line": 235, "span_ids": ["test_walk_dirty_cached_dir"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_dirty_cached_dir(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\n        {\"data\": {\"foo\": \"foo\", \"bar\": \"bar\"}}, commit=\"add data\",\n    )\n    (tmp_dir / \"data\" / \"foo\").unlink()\n\n    tree = RepoTree(dvc)\n\n    data = PathInfo(tmp_dir) / \"data\"\n\n    actual = []\n    for root, dirs, files in tree.walk(data):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    assert actual == [(data / \"bar\").fspath]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_mixed_dir_test_walk_mixed_dir.assert_len_actual_len": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_mixed_dir_test_walk_mixed_dir.assert_len_actual_len", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 238, "end_line": 263, "span_ids": ["test_walk_mixed_dir"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_mixed_dir(tmp_dir, scm, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    tmp_dir.dvc.add(os.path.join(\"dir\", \"foo\"))\n    tmp_dir.scm.add(\n        [\n            os.path.join(\"dir\", \"bar\"),\n            os.path.join(\"dir\", \".gitignore\"),\n            os.path.join(\"dir\", \"foo.dvc\"),\n        ]\n    )\n    tmp_dir.scm.commit(\"add dir\")\n\n    tree = RepoTree(dvc)\n\n    expected = [\n        str(PathInfo(\"dir\") / \"foo\"),\n        str(PathInfo(\"dir\") / \"bar\"),\n        str(PathInfo(\"dir\") / \".gitignore\"),\n    ]\n    actual = []\n    for root, dirs, files in tree.walk(\"dir\"):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_onerror_test_walk_onerror.None_3.for___in_tree_walk_foo_.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_onerror_test_walk_onerror.None_3.for___in_tree_walk_foo_.pass", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 266, "end_line": 285, "span_ids": ["test_walk_onerror"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_walk_onerror(tmp_dir, dvc):\n    def onerror(exc):\n        raise exc\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    tree = RepoTree(dvc)\n\n    # path does not exist\n    for _ in tree.walk(\"dir\"):\n        pass\n    with pytest.raises(OSError):\n        for _ in tree.walk(\"dir\", onerror=onerror):\n            pass\n\n    # path is not a directory\n    for _ in tree.walk(\"foo\"):\n        pass\n    with pytest.raises(OSError):\n        for _ in tree.walk(\"foo\", onerror=onerror):\n            pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_isdvc_make_subrepo.with_dir__chdir_.if_config_.dir__add_remote_config_co": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_isdvc_make_subrepo.with_dir__chdir_.if_config_.dir__add_remote_config_co", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 288, "end_line": 306, "span_ids": ["make_subrepo", "test_isdvc"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_isdvc(tmp_dir, dvc):\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\", \"dir\": {\"baz\": \"baz\"}})\n    dvc.add(\"foo\")\n    dvc.add(\"dir\")\n    tree = RepoTree(dvc)\n    assert tree.isdvc(\"foo\")\n    assert not tree.isdvc(\"bar\")\n    assert tree.isdvc(\"dir\")\n    assert not tree.isdvc(\"dir/baz\")\n    assert tree.isdvc(\"dir/baz\", recursive=True)\n\n\ndef make_subrepo(dir_, scm, config=None):\n    dir_.mkdir(parents=True, exist_ok=True)\n    with dir_.chdir():\n        dir_.scm = scm\n        dir_.init(dvc=True, subdir=True)\n        if config:\n            dir_.add_remote(config=config)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_subrepos_test_subrepos.None_2.assert_tree_isdvc_subrepo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_subrepos_test_subrepos.None_2.assert_tree_isdvc_subrepo", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 309, "end_line": 369, "span_ids": ["test_subrepos"], "tokens": 561}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_subrepos(tmp_dir, scm, dvc):\n    tmp_dir.scm_gen(\n        {\"dir\": {\"repo.txt\": \"file to confuse RepoTree\"}},\n        commit=\"dir/repo.txt\",\n    )\n\n    subrepo1 = tmp_dir / \"dir\" / \"repo\"\n    subrepo2 = tmp_dir / \"dir\" / \"repo2\"\n\n    for repo in [subrepo1, subrepo2]:\n        make_subrepo(repo, scm)\n\n    subrepo1.dvc_gen({\"foo\": \"foo\", \"dir1\": {\"bar\": \"bar\"}}, commit=\"FOO\")\n    subrepo2.dvc_gen(\n        {\"lorem\": \"lorem\", \"dir2\": {\"ipsum\": \"ipsum\"}}, commit=\"BAR\"\n    )\n\n    dvc.tree._reset()\n    tree = RepoTree(dvc, subrepos=True, fetch=True)\n\n    def assert_tree_belongs_to_repo(ret_val):\n        method = tree._get_repo\n\n        def f(*args, **kwargs):\n            r = method(*args, **kwargs)\n            assert r.root_dir == ret_val.root_dir\n            return r\n\n        return f\n\n    with mock.patch.object(\n        tree,\n        \"_get_repo\",\n        side_effect=assert_tree_belongs_to_repo(subrepo1.dvc),\n    ):\n        assert tree.exists(subrepo1 / \"foo\") is True\n        assert tree.exists(subrepo1 / \"bar\") is False\n\n        assert tree.isfile(subrepo1 / \"foo\") is True\n        assert tree.isfile(subrepo1 / \"dir1\" / \"bar\") is True\n        assert tree.isfile(subrepo1 / \"dir1\") is False\n\n        assert tree.isdir(subrepo1 / \"dir1\") is True\n        assert tree.isdir(subrepo1 / \"dir1\" / \"bar\") is False\n        assert tree.isdvc(subrepo1 / \"foo\") is True\n\n    with mock.patch.object(\n        tree,\n        \"_get_repo\",\n        side_effect=assert_tree_belongs_to_repo(subrepo2.dvc),\n    ):\n        assert tree.exists(subrepo2 / \"lorem\") is True\n        assert tree.exists(subrepo2 / \"ipsum\") is False\n\n        assert tree.isfile(subrepo2 / \"lorem\") is True\n        assert tree.isfile(subrepo2 / \"dir2\" / \"ipsum\") is True\n        assert tree.isfile(subrepo2 / \"dir2\") is False\n\n        assert tree.isdir(subrepo2 / \"dir2\") is True\n        assert tree.isdir(subrepo2 / \"dir2\" / \"ipsum\") is False\n        assert tree.isdvc(subrepo2 / \"lorem\") is True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_subrepo_walk_test_subrepo_walk.assert_len_actual_len": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_subrepo_walk_test_subrepo_walk.assert_len_actual_len", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 372, "end_line": 431, "span_ids": ["test_subrepo_walk"], "tokens": 592}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"dvcfiles,extra_expected\",\n    [\n        (False, []),\n        (\n            True,\n            [\n                PathInfo(\"dir\") / \"repo\" / \"foo.dvc\",\n                PathInfo(\"dir\") / \"repo\" / \"dir1.dvc\",\n                PathInfo(\"dir\") / \"repo2\" / \"lorem.dvc\",\n                PathInfo(\"dir\") / \"repo2\" / \"dir2.dvc\",\n            ],\n        ),\n    ],\n)\ndef test_subrepo_walk(tmp_dir, scm, dvc, dvcfiles, extra_expected):\n    tmp_dir.scm_gen(\n        {\"dir\": {\"repo.txt\": \"file to confuse RepoTree\"}},\n        commit=\"dir/repo.txt\",\n    )\n\n    subrepo1 = tmp_dir / \"dir\" / \"repo\"\n    subrepo2 = tmp_dir / \"dir\" / \"repo2\"\n\n    subdirs = [subrepo1, subrepo2]\n    for dir_ in subdirs:\n        make_subrepo(dir_, scm)\n\n    subrepo1.dvc_gen({\"foo\": \"foo\", \"dir1\": {\"bar\": \"bar\"}}, commit=\"FOO\")\n    subrepo2.dvc_gen(\n        {\"lorem\": \"lorem\", \"dir2\": {\"ipsum\": \"ipsum\"}}, commit=\"BAR\"\n    )\n\n    # using tree that does not have dvcignore\n    dvc.tree._reset()\n    tree = RepoTree(dvc, subrepos=True, fetch=True)\n    expected = [\n        PathInfo(\"dir\") / \"repo\",\n        PathInfo(\"dir\") / \"repo.txt\",\n        PathInfo(\"dir\") / \"repo2\",\n        PathInfo(\"dir\") / \"repo\" / \".dvcignore\",\n        PathInfo(\"dir\") / \"repo\" / \".gitignore\",\n        PathInfo(\"dir\") / \"repo\" / \"foo\",\n        PathInfo(\"dir\") / \"repo\" / \"dir1\",\n        PathInfo(\"dir\") / \"repo\" / \"dir1\" / \"bar\",\n        PathInfo(\"dir\") / \"repo2\" / \".dvcignore\",\n        PathInfo(\"dir\") / \"repo2\" / \".gitignore\",\n        PathInfo(\"dir\") / \"repo2\" / \"lorem\",\n        PathInfo(\"dir\") / \"repo2\" / \"dir2\",\n        PathInfo(\"dir\") / \"repo2\" / \"dir2\" / \"ipsum\",\n    ]\n\n    actual = []\n    for root, dirs, files in tree.walk(\"dir\", dvcfiles=dvcfiles):\n        for entry in dirs + files:\n            actual.append(os.path.join(root, entry))\n\n    expected = [str(path) for path in expected + extra_expected]\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_repo_tree_no_subrepos_test_repo_tree_no_subrepos.None_9": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_repo_tree_no_subrepos_test_repo_tree_no_subrepos.None_9", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 434, "end_line": 476, "span_ids": ["test_repo_tree_no_subrepos"], "tokens": 443}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repo_tree_no_subrepos(tmp_dir, dvc, scm):\n    tmp_dir.scm_gen(\n        {\"dir\": {\"repo.txt\": \"file to confuse RepoTree\"}},\n        commit=\"dir/repo.txt\",\n    )\n    tmp_dir.dvc_gen({\"lorem\": \"lorem\"}, commit=\"add foo\")\n\n    subrepo = tmp_dir / \"dir\" / \"repo\"\n    make_subrepo(subrepo, scm)\n    subrepo.dvc_gen({\"foo\": \"foo\", \"dir1\": {\"bar\": \"bar\"}}, commit=\"FOO\")\n    subrepo.scm_gen({\"ipsum\": \"ipsum\"}, commit=\"BAR\")\n\n    # using tree that does not have dvcignore\n    dvc.tree._reset()\n    tree = RepoTree(dvc, subrepos=False, fetch=True)\n    expected = [\n        tmp_dir / \".dvcignore\",\n        tmp_dir / \".gitignore\",\n        tmp_dir / \"lorem\",\n        tmp_dir / \"lorem.dvc\",\n        tmp_dir / \"dir\",\n        tmp_dir / \"dir\" / \"repo.txt\",\n    ]\n\n    actual = []\n    for root, dirs, files in tree.walk(tmp_dir, dvcfiles=True):\n        for entry in dirs + files:\n            actual.append(os.path.normpath(os.path.join(root, entry)))\n\n    expected = [str(path) for path in expected]\n    assert set(actual) == set(expected)\n    assert len(actual) == len(expected)\n\n    assert tree.isfile(tmp_dir / \"lorem\") is True\n    assert tree.isfile(tmp_dir / \"dir\" / \"repo\" / \"foo\") is False\n    assert tree.isdir(tmp_dir / \"dir\" / \"repo\") is False\n    assert tree.isdir(tmp_dir / \"dir\") is True\n\n    assert tree.isdvc(tmp_dir / \"lorem\") is True\n    assert tree.isdvc(tmp_dir / \"dir\" / \"repo\" / \"dir1\") is False\n\n    assert tree.exists(tmp_dir / \"dir\" / \"repo.txt\") is True\n    assert tree.exists(tmp_dir / \"repo\" / \"ipsum\") is False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_cached_file_test_get_hash_cached_file.assert_dvc_tree_spy_calle": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_cached_file_test_get_hash_cached_file.assert_dvc_tree_spy_calle", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 479, "end_line": 486, "span_ids": ["test_get_hash_cached_file"], "tokens": 112}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_cached_file(tmp_dir, dvc, mocker):\n    tmp_dir.dvc_gen({\"foo\": \"foo\"})\n    tree = RepoTree(dvc)\n    dvc_tree_spy = mocker.spy(tree._dvctrees[dvc.root_dir], \"get_file_hash\")\n    assert tree.get_hash(PathInfo(tmp_dir) / \"foo\") == HashInfo(\n        \"md5\", \"acbd18db4cc2f85cedef654fccc4a4d8\",\n    )\n    assert dvc_tree_spy.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_cached_dir_test_get_hash_cached_dir.assert_dvc_tree_spy_calle": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_cached_dir_test_get_hash_cached_dir.assert_dvc_tree_spy_calle", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 489, "end_line": 508, "span_ids": ["test_get_hash_cached_dir"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_cached_dir(tmp_dir, dvc, mocker):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\", \"subdir\": {\"data\": \"data\"}}}\n    )\n    tree = RepoTree(dvc)\n    get_file_hash_spy = mocker.spy(tree, \"get_file_hash\")\n    dvc_tree_spy = mocker.spy(tree._dvctrees[dvc.root_dir], \"get_dir_hash\")\n    assert tree.get_hash(PathInfo(tmp_dir) / \"dir\") == HashInfo(\n        \"md5\", \"8761c4e9acad696bee718615e23e22db.dir\",\n    )\n    assert get_file_hash_spy.called\n    assert not dvc_tree_spy.called\n    get_file_hash_spy.reset_mock()\n\n    shutil.rmtree(tmp_dir / \"dir\")\n    assert tree.get_hash(PathInfo(tmp_dir) / \"dir\") == HashInfo(\n        \"md5\", \"8761c4e9acad696bee718615e23e22db.dir\",\n    )\n    assert not get_file_hash_spy.called\n    assert dvc_tree_spy.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_cached_granular_test_get_hash_cached_granular.assert_dvc_tree_spy_calle": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_cached_granular_test_get_hash_cached_granular.assert_dvc_tree_spy_calle", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 511, "end_line": 524, "span_ids": ["test_get_hash_cached_granular"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_cached_granular(tmp_dir, dvc, mocker):\n    tmp_dir.dvc_gen(\n        {\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\", \"subdir\": {\"data\": \"data\"}}}\n    )\n    tree = RepoTree(dvc, fetch=True)\n    dvc_tree_spy = mocker.spy(tree._dvctrees[dvc.root_dir], \"get_file_hash\")\n    subdir = PathInfo(tmp_dir) / \"dir\" / \"subdir\"\n    assert tree.get_hash(subdir) == HashInfo(\n        \"md5\", \"af314506f1622d107e0ed3f14ec1a3b5.dir\",\n    )\n    assert tree.get_hash(subdir / \"data\") == HashInfo(\n        \"md5\", \"8d777f385d3dfec8815d20f7496026dc\",\n    )\n    assert dvc_tree_spy.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_mixed_dir_test_get_hash_mixed_dir.assert_actual_expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_mixed_dir_test_get_hash_mixed_dir.assert_actual_expected", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 527, "end_line": 542, "span_ids": ["test_get_hash_mixed_dir"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_mixed_dir(tmp_dir, scm, dvc):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    tmp_dir.dvc.add(os.path.join(\"dir\", \"foo\"))\n    tmp_dir.scm.add(\n        [\n            os.path.join(\"dir\", \"bar\"),\n            os.path.join(\"dir\", \".gitignore\"),\n            os.path.join(\"dir\", \"foo.dvc\"),\n        ]\n    )\n    tmp_dir.scm.commit(\"add dir\")\n\n    tree = RepoTree(dvc)\n    actual = tree.get_hash(PathInfo(tmp_dir) / \"dir\")\n    expected = HashInfo(\"md5\", \"e1d9e8eae5374860ae025ec84cfd85c7.dir\")\n    assert actual == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_nested_subrepos_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_walk_nested_subrepos_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 566, "end_line": 615, "span_ids": ["test_walk_nested_subrepos"], "tokens": 509}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"traverse_subrepos\", [True, False])\ndef test_walk_nested_subrepos(tmp_dir, dvc, scm, traverse_subrepos):\n    # generate a dvc and fs structure, with suffix based on repo's basename\n    def fs_structure(suffix):\n        return {\n            f\"foo-{suffix}\": f\"foo-{suffix}\",\n            f\"dir-{suffix}\": {f\"bar-{suffix}\": f\"bar-{suffix}\"},\n        }\n\n    def dvc_structure(suffix):\n        return {\n            f\"lorem-{suffix}\": f\"lorem-{suffix}\",\n            f\"dvc-{suffix}\": {f\"ipsum-{suffix}\": f\"ipsum-{suffix}\"},\n        }\n\n    paths = [\"subrepo1\", \"subrepo2\", \"subrepo1/subrepo3\"]\n    subrepos = [tmp_dir / path for path in paths]\n    for repo_dir in subrepos:\n        make_subrepo(repo_dir, scm)\n\n    extras = {\".dvcignore\", \".gitignore\"}  # these files are always there\n    expected = {}\n    for repo_dir in subrepos + [tmp_dir]:\n        base = os.path.basename(repo_dir)\n        scm_files = fs_structure(base)\n        dvc_files = dvc_structure(base)\n        with repo_dir.chdir():\n            repo_dir.scm_gen(scm_files, commit=f\"git add in {repo_dir}\")\n            repo_dir.dvc_gen(dvc_files, commit=f\"dvc add in {repo_dir}\")\n\n        if traverse_subrepos or repo_dir == tmp_dir:\n            expected[str(repo_dir)] = set(\n                scm_files.keys() | dvc_files.keys() | extras\n            )\n            # files inside a dvc directory\n            expected[str(repo_dir / f\"dvc-{base}\")] = {f\"ipsum-{base}\"}\n            # files inside a git directory\n            expected[str(repo_dir / f\"dir-{base}\")] = {f\"bar-{base}\"}\n\n    if traverse_subrepos:\n        # update subrepos\n        expected[str(tmp_dir)].update([\"subrepo1\", \"subrepo2\"])\n        expected[str(tmp_dir / \"subrepo1\")].add(\"subrepo3\")\n\n    actual = {}\n    tree = RepoTree(dvc, subrepos=traverse_subrepos)\n    for root, dirs, files in tree.walk(str(tmp_dir)):\n        actual[root] = set(dirs + files)\n    assert expected == actual", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_not_existing_test_metadata_git_tracked_file.assert_not_meta_outs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_not_existing_test_metadata_git_tracked_file.assert_not_meta_outs", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 60, "end_line": 91, "span_ids": ["test_metadata_not_existing", "test_metadata_git_tracked_file"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metadata_not_existing(repo_tree):\n    path = PathInfo(\"path\") / \"that\" / \"does\" / \"not\" / \"exist\"\n\n    with pytest.raises(FileNotFoundError):\n        repo_tree.metadata(path)\n\n\n@pytest.mark.parametrize(\n    \"path\",\n    [\n        \"README.md\",\n        \"models/train.py\",\n        \"models/test.py\",\n        PathInfo(\"src\") / \"utils\" / \"__init__.py\",\n        PathInfo(\"src\") / \"utils\" / \"serve_model.py\",\n    ],\n)\ndef test_metadata_git_tracked_file(repo_tree, path):\n    root = PathInfo(repo_tree.root_dir)\n    meta = repo_tree.metadata(path)\n\n    assert meta.path_info == root / path\n    assert meta.repo.root_dir == repo_tree.root_dir\n    assert not meta.is_output\n    assert not meta.part_of_output\n    assert not meta.contains_outputs\n    assert not meta.is_dvc\n    assert not meta.output_exists\n    assert not meta.isdir\n    assert not meta.is_exec\n    assert meta.isfile\n    assert not meta.outs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_dvc_tracked_file_test_metadata_dvc_tracked_file.assert_out_path_info_for": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_dvc_tracked_file_test_metadata_dvc_tracked_file.assert_out_path_info_for", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 94, "end_line": 130, "span_ids": ["test_metadata_dvc_tracked_file"], "tokens": 300}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"path, outs, is_output\",\n    [\n        (PathInfo(\"data\") / \"raw\" / \"raw-1.csv\", [PathInfo(\"data\")], False),\n        (PathInfo(\"data\") / \"raw\" / \"raw-2.csv\", [PathInfo(\"data\")], False),\n        (\n            PathInfo(\"data\") / \"processed\" / \"processed-1.csv\",\n            [PathInfo(\"data\")],\n            False,\n        ),\n        (\n            PathInfo(\"data\") / \"processed\" / \"processed-2.csv\",\n            [PathInfo(\"data\")],\n            False,\n        ),\n        (\n            \"models/transform.pickle\",\n            [PathInfo(\"models\") / \"transform.pickle\"],\n            True,\n        ),\n    ],\n)\ndef test_metadata_dvc_tracked_file(repo_tree, path, outs, is_output):\n    root = PathInfo(repo_tree.root_dir)\n    meta = repo_tree.metadata(path)\n\n    assert meta.path_info == root / path\n    assert meta.repo.root_dir == repo_tree.root_dir\n    assert meta.is_output == is_output\n    assert meta.part_of_output != is_output\n    assert not meta.contains_outputs\n    assert meta.is_dvc\n    assert meta.output_exists\n    assert not meta.isdir\n    assert not meta.is_exec\n    assert meta.isfile\n    assert {out.path_info for out in meta.outs} == {root / out for out in outs}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_git_only_dirs_test_metadata_git_only_dirs.assert_not_meta_outs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_git_only_dirs_test_metadata_git_only_dirs.assert_not_meta_outs", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 133, "end_line": 148, "span_ids": ["test_metadata_git_only_dirs"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"path\", [\"src\", \"src/utils\"])\ndef test_metadata_git_only_dirs(repo_tree, path):\n    root = PathInfo(repo_tree.root_dir)\n    meta = repo_tree.metadata(path)\n\n    assert meta.path_info == root / path\n    assert meta.repo.root_dir == repo_tree.root_dir\n    assert not meta.is_output\n    assert not meta.part_of_output\n    assert not meta.contains_outputs\n    assert not meta.is_dvc\n    assert not meta.output_exists\n    assert meta.isdir\n    assert meta.is_exec\n    assert not meta.isfile\n    assert not meta.outs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_git_dvc_mixed_dirs_test_metadata_git_dvc_mixed_dirs.assert_out_path_info_for": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_git_dvc_mixed_dirs_test_metadata_git_dvc_mixed_dirs.assert_out_path_info_for", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 151, "end_line": 175, "span_ids": ["test_metadata_git_dvc_mixed_dirs"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"path, expected_outs\",\n    [\n        (\".\", [PathInfo(\"data\"), PathInfo(\"models\") / \"transform.pickle\"]),\n        (\"models\", [PathInfo(\"models\") / \"transform.pickle\"]),\n    ],\n)\ndef test_metadata_git_dvc_mixed_dirs(repo_tree, path, expected_outs):\n    root = PathInfo(repo_tree.root_dir)\n    meta = repo_tree.metadata(root / path)\n\n    assert meta.path_info == root / path\n    assert meta.repo.root_dir == repo_tree.root_dir\n    assert not meta.is_output\n    assert not meta.part_of_output\n    assert meta.contains_outputs\n    assert not meta.is_dvc\n    assert meta.output_exists\n    assert meta.isdir\n    assert not meta.is_exec\n    assert not meta.isfile\n\n    assert {out.path_info for out in meta.outs} == {\n        root / out for out in expected_outs\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_dvc_only_dirs_test_metadata_dvc_only_dirs.assert_out_path_info_for": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_dvc_only_dirs_test_metadata_dvc_only_dirs.assert_out_path_info_for", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 178, "end_line": 201, "span_ids": ["test_metadata_dvc_only_dirs"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"path, is_output\",\n    [\n        (\"data\", True),\n        (\"data/raw\", False),  # is inside output\n        (\"data/processed\", False),\n    ],\n)\ndef test_metadata_dvc_only_dirs(repo_tree, path, is_output):\n    data = PathInfo(repo_tree.root_dir) / \"data\"\n    root = PathInfo(repo_tree.root_dir)\n    meta = repo_tree.metadata(root / path)\n\n    assert meta.path_info == root / path\n    assert meta.repo.root_dir == repo_tree.root_dir\n    assert meta.is_output == is_output\n    assert meta.part_of_output != is_output\n    assert not meta.contains_outputs\n    assert meta.is_dvc\n    assert meta.output_exists\n    assert meta.isdir\n    assert not meta.is_exec\n    assert not meta.isfile\n    assert {out.path_info for out in meta.outs} == {data}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_on_subrepos_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_test_metadata_on_subrepos_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 187, "end_line": 205, "span_ids": ["test_metadata_on_subrepos"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metadata_on_subrepos(make_tmp_dir, tmp_dir, dvc, scm, repo_tree):\n    subrepo = tmp_dir / \"subrepo\"\n    make_subrepo(subrepo, scm)\n    subrepo.scm_gen(\"foo\", \"foo\", commit=\"add foo on subrepo\")\n    subrepo.dvc_gen(\"foobar\", \"foobar\", commit=\"add foobar on subrepo\")\n\n    for path in [\"subrepo\", \"subrepo/foo\", \"subrepo/foobar\"]:\n        meta = repo_tree.metadata(tmp_dir / path)\n        assert meta.repo.root_dir == str(\n            subrepo\n        ), f\"repo root didn't match for {path}\"\n\n    # supports external outputs on top-level DVC repo\n    external_dir = make_tmp_dir(\"external-output\")\n    external_dir.gen(\"bar\", \"bar\")\n    dvc.add(str(external_dir / \"bar\"), external=True)\n    meta = repo_tree.metadata(external_dir / \"bar\")\n    assert meta.repo.root_dir == str(tmp_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_s3.py_pytest_test_init.assert_tree_path_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_s3.py_pytest_test_init.assert_tree_path_info_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 28, "span_ids": ["test_init", "imports", "grants"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.config import ConfigError\nfrom dvc.exceptions import DvcException\nfrom dvc.tree.s3 import S3Tree\n\nbucket_name = \"bucket-name\"\nprefix = \"some/prefix\"\nurl = f\"s3://{bucket_name}/{prefix}\"\nkey_id = \"key-id\"\nkey_secret = \"key-secret\"\n\n\n@pytest.fixture(autouse=True)\ndef grants():\n    return {\n        \"grant_read\": \"id=read-permission-id,id=other-read-permission-id\",\n        \"grant_read_acp\": \"id=read-acp-permission-id\",\n        \"grant_write_acp\": \"id=write-acp-permission-id\",\n        \"grant_full_control\": \"id=full-control-permission-id\",\n    }\n\n\ndef test_init(dvc):\n    config = {\"url\": url}\n    tree = S3Tree(dvc, config)\n\n    assert tree.path_info == url", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_s3.py_test_grants_test_grants.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_s3.py_test_grants_test_grants.None_3", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 31, "end_line": 49, "span_ids": ["test_grants"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_grants(dvc):\n    config = {\n        \"url\": url,\n        \"grant_read\": \"id=read-permission-id,id=other-read-permission-id\",\n        \"grant_read_acp\": \"id=read-acp-permission-id\",\n        \"grant_write_acp\": \"id=write-acp-permission-id\",\n        \"grant_full_control\": \"id=full-control-permission-id\",\n    }\n    tree = S3Tree(dvc, config)\n\n    assert (\n        tree.extra_args[\"GrantRead\"]\n        == \"id=read-permission-id,id=other-read-permission-id\"\n    )\n    assert tree.extra_args[\"GrantReadACP\"] == \"id=read-acp-permission-id\"\n    assert tree.extra_args[\"GrantWriteACP\"] == \"id=write-acp-permission-id\"\n    assert (\n        tree.extra_args[\"GrantFullControl\"] == \"id=full-control-permission-id\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_s3.py_test_grants_mutually_exclusive_acl_error_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_s3.py_test_grants_mutually_exclusive_acl_error_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_s3.py", "file_name": "test_s3.py", "file_type": "text/x-python", "category": "test", "start_line": 52, "end_line": 110, "span_ids": ["test_get_s3_no_credentials", "test_sse_kms_key_id", "test_get_s3_connection_error", "test_grants_mutually_exclusive_acl_error", "test_key_id_and_secret", "test_get_bucket", "test_get_s3_connection_error_endpoint"], "tokens": 464}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_grants_mutually_exclusive_acl_error(dvc, grants):\n    for grant_option, grant_value in grants.items():\n        config = {\"url\": url, \"acl\": \"public-read\", grant_option: grant_value}\n\n        with pytest.raises(ConfigError):\n            S3Tree(dvc, config)\n\n\ndef test_sse_kms_key_id(dvc):\n    tree = S3Tree(dvc, {\"url\": url, \"sse_kms_key_id\": \"key\"})\n    assert tree.extra_args[\"SSEKMSKeyId\"] == \"key\"\n\n\ndef test_key_id_and_secret(dvc):\n    tree = S3Tree(\n        dvc,\n        {\"url\": url, \"access_key_id\": key_id, \"secret_access_key\": key_secret},\n    )\n    assert tree.access_key_id == key_id\n    assert tree.secret_access_key == key_secret\n\n\ndef test_get_s3_no_credentials(mocker):\n    from botocore.exceptions import NoCredentialsError\n\n    tree = S3Tree(None, {})\n    with pytest.raises(DvcException, match=\"Unable to find AWS credentials\"):\n        with tree._get_s3():\n            raise NoCredentialsError\n\n\ndef test_get_s3_connection_error(mocker):\n    from botocore.exceptions import EndpointConnectionError\n\n    tree = S3Tree(None, {})\n\n    msg = \"Unable to connect to 'AWS S3'.\"\n    with pytest.raises(DvcException, match=msg):\n        with tree._get_s3():\n            raise EndpointConnectionError(endpoint_url=\"url\")\n\n\ndef test_get_s3_connection_error_endpoint(mocker):\n    from botocore.exceptions import EndpointConnectionError\n\n    tree = S3Tree(None, {\"endpointurl\": \"https://example.com\"})\n\n    msg = \"Unable to connect to 'https://example.com'.\"\n    with pytest.raises(DvcException, match=msg):\n        with tree._get_s3():\n            raise EndpointConnectionError(endpoint_url=\"url\")\n\n\ndef test_get_bucket():\n    tree = S3Tree(None, {\"url\": \"s3://mybucket/path\"})\n    with pytest.raises(DvcException, match=\"Bucket 'mybucket' does not exist\"):\n        with tree._get_bucket(\"mybucket\") as bucket:\n            raise bucket.meta.client.exceptions.NoSuchBucket({}, None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/serialize/test_yaml.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/serialize/test_yaml.py__", "embedding": null, "metadata": {"file_path": "tests/unit/utils/serialize/test_yaml.py", "file_name": "test_yaml.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 15, "span_ids": ["imports", "test_parse_yaml_duplicate_key_error"], "tokens": 76}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.utils.serialize._yaml import YAMLError, parse_yaml\n\n\ndef test_parse_yaml_duplicate_key_error():\n    text = \"\"\"\\\n    mykey:\n    - foo\n    mykey:\n    - bar\n    \"\"\"\n    with pytest.raises(YAMLError, match='found duplicate key \"mykey\"'):\n        parse_yaml(text, \"mypath\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__format_time__format_field.return.str_val_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__format_time__format_field.return.str_val_", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 178, "end_line": 196, "span_ids": ["_format_field", "_format_time"], "tokens": 140}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _format_time(timestamp):\n    if timestamp is None:\n        return \"-\"\n    if timestamp.date() == date.today():\n        fmt = \"%I:%M %p\"\n    else:\n        fmt = \"%b %d, %Y\"\n    return timestamp.strftime(fmt)\n\n\ndef _format_field(val, precision=DEFAULT_PRECISION):\n    if isinstance(val, float):\n        fmt = f\"{{:.{precision}g}}\"\n        return fmt.format(val)\n    elif isinstance(val, Mapping):\n        return {k: _format_field(v) for k, v in val.items()}\n    elif isinstance(val, list):\n        return [_format_field(x) for x in val]\n    return str(val)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__extend_row__parse_list.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__extend_row__parse_list.return.ret", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 199, "end_line": 234, "span_ids": ["_parse_list", "_extend_row"], "tokens": 235}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _extend_row(row, names, items, precision):\n    from rich.text import Text\n\n    if not items:\n        row.extend([\"-\"] * len(names))\n        return\n\n    for fname, item in items:\n        if isinstance(item, dict):\n            item = flatten(item)\n        else:\n            item = {fname: item}\n        for name in names:\n            if name in item:\n                value = item[name]\n                if value is None:\n                    text = \"-\"\n                else:\n                    # wrap field data in rich.Text, otherwise rich may\n                    # interpret unescaped braces from list/dict types as rich\n                    # markup tags\n                    text = Text(str(_format_field(value, precision)))\n                row.append(text)\n            else:\n                row.append(\"-\")\n\n\ndef _parse_list(param_list):\n    ret = []\n    for param_str in param_list:\n        # we don't care about filename prefixes for show, silently\n        # ignore it if provided to keep usage consistent with other\n        # metric/param list command options\n        _, _, param_str = param_str.rpartition(\":\")\n        ret.extend(param_str.split(\",\"))\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser_add_parser.None_13": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser_add_parser.None_13", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 602, "end_line": 712, "span_ids": ["add_parser"], "tokens": 712}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    EXPERIMENTS_HELP = \"Commands to run and compare experiments.\"\n\n    experiments_parser = subparsers.add_parser(\n        \"experiments\",\n        parents=[parent_parser],\n        aliases=[\"exp\"],\n        description=append_doc_link(EXPERIMENTS_HELP, \"exp\"),\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n        help=EXPERIMENTS_HELP,\n    )\n\n    experiments_subparsers = experiments_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc experiments CMD --help` to display \"\n        \"command-specific help.\",\n    )\n\n    fix_subparsers(experiments_subparsers)\n\n    EXPERIMENTS_SHOW_HELP = \"Print experiments.\"\n    experiments_show_parser = experiments_subparsers.add_parser(\n        \"show\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_SHOW_HELP, \"exp/show\"),\n        help=EXPERIMENTS_SHOW_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_show_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show experiments derived from the tip of all Git branches.\",\n    )\n    experiments_show_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show experiments derived from all Git tags.\",\n    )\n    experiments_show_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show experiments derived from all Git commits.\",\n    )\n    experiments_show_parser.add_argument(\n        \"--no-pager\",\n        action=\"store_true\",\n        default=False,\n        help=\"Do not pipe output into a pager.\",\n    )\n    experiments_show_parser.add_argument(\n        \"--include-metrics\",\n        action=\"append\",\n        default=[],\n        help=\"Include the specified metrics in output table.\",\n        metavar=\"<metrics_list>\",\n    )\n    experiments_show_parser.add_argument(\n        \"--exclude-metrics\",\n        action=\"append\",\n        default=[],\n        help=\"Exclude the specified metrics from output table.\",\n        metavar=\"<metrics_list>\",\n    )\n    experiments_show_parser.add_argument(\n        \"--include-params\",\n        action=\"append\",\n        default=[],\n        help=\"Include the specified params in output table.\",\n        metavar=\"<params_list>\",\n    )\n    experiments_show_parser.add_argument(\n        \"--exclude-params\",\n        action=\"append\",\n        default=[],\n        help=\"Exclude the specified params from output table.\",\n        metavar=\"<params_list>\",\n    )\n    experiments_show_parser.add_argument(\n        \"--sort-by\",\n        help=\"Sort related experiments by the specified metric or param.\",\n        metavar=\"<metric/param>\",\n    )\n    experiments_show_parser.add_argument(\n        \"--sort-order\",\n        help=\"Sort order to use with --sort-by.\",\n        choices=(\"asc\", \"desc\"),\n        default=\"asc\",\n    )\n    experiments_show_parser.add_argument(\n        \"--no-timestamp\",\n        action=\"store_true\",\n        default=False,\n        help=\"Do not show experiment timestamps.\",\n    )\n    experiments_show_parser.add_argument(\n        \"--sha\",\n        action=\"store_true\",\n        default=False,\n        help=\"Always show git commit SHAs instead of branch/tag names.\",\n    )\n    experiments_show_parser.add_argument(\n        \"--show-json\",\n        action=\"store_true\",\n        default=False,\n        help=\"Print output in JSON format instead of a human-readable table.\",\n    )\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_PathInfo.__str___PathInfo.relative_to.return.self___class___path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/path_info.py_PathInfo.__str___PathInfo.relative_to.return.self___class___path_", "embedding": null, "metadata": {"file_path": "dvc/path_info.py", "file_name": "path_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 49, "end_line": 87, "span_ids": ["PathInfo:7", "PathInfo.fspath", "PathInfo.__str__", "PathInfo.__repr__", "PathInfo.isin", "PathInfo.relative_to", "PathInfo.__fspath__", "PathInfo.relpath"], "tokens": 360}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PathInfo(pathlib.PurePath, _BasePath):\n    # Use __slots__ in PathInfo objects following PurePath implementation.\n    # This makes objects smaller and speeds up attribute access.\n\n    def __str__(self):\n        path = self.__fspath__()\n        return relpath(path)\n\n    def __repr__(self):\n        return \"{}: '{}'\".format(type(self).__name__, self)\n\n    # This permits passing it to file utils directly in Python 3.6+\n    def __fspath__(self):\n        return pathlib.PurePath.__str__(self)\n\n    @property\n    def fspath(self):\n        return self.__fspath__()\n\n    url = fspath\n\n    def relpath(self, other):\n        return self.__class__(relpath(self, other))\n\n    def isin(self, other):\n        if isinstance(other, (str, bytes)):\n            other = self.__class__(other)\n        elif self.__class__ != other.__class__:\n            return False\n        # Use cached casefolded parts to compare paths\n        n = len(other._cparts)\n        return len(self._cparts) > n and self._cparts[:n] == other._cparts\n\n    def relative_to(self, other):  # pylint: disable=arguments-differ\n        # pathlib relative_to raises exception when one path is not a direct\n        # descendant of the other when os.path.relpath would return abspath.\n        # For DVC PathInfo we only need the relpath behavior.\n        # See: https://bugs.python.org/issue40358\n        try:\n            path = super().relative_to(other)\n        except ValueError:\n            path = relpath(self, other)\n        return self.__class__(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/init.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/init.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/init.py", "file_name": "init.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 90, "span_ids": ["imports", "init"], "tokens": 603}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nfrom dvc.config import Config\nfrom dvc.exceptions import InitError, InvalidArgumentError\nfrom dvc.ignore import init as init_dvcignore\nfrom dvc.repo import Repo\nfrom dvc.scm import SCM\nfrom dvc.scm.base import SCMError\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import remove\n\nlogger = logging.getLogger(__name__)\n\n\ndef init(root_dir=os.curdir, no_scm=False, force=False, subdir=False):\n    \"\"\"\n    Creates an empty repo on the given directory -- basically a\n    `.dvc` directory with subdirectories for configuration and cache.\n\n    It should be tracked by a SCM or use the `--no-scm` flag.\n\n    If the given directory is not empty, you must use the `--force`\n    flag to override it.\n\n    Args:\n        root_dir: Path to repo's root directory.\n\n    Returns:\n        Repo instance.\n\n    Raises:\n        KeyError: Raises an exception.\n    \"\"\"\n\n    if no_scm and subdir:\n        raise InvalidArgumentError(\n            \"Cannot initialize repo with `--no-scm` and `--subdir`\"\n        )\n\n    root_dir = os.path.realpath(root_dir)\n    dvc_dir = os.path.join(root_dir, Repo.DVC_DIR)\n\n    try:\n        scm = SCM(root_dir, search_parent_directories=subdir, no_scm=no_scm)\n    except SCMError:\n        raise InitError(\n            f\"{root_dir} is not tracked by any supported SCM tool (e.g. Git). \"\n            \"Use `--no-scm` if you don't want to use any SCM or \"\n            \"`--subdir` if initializing inside a subdirectory of a parent SCM \"\n            \"repository.\"\n        )\n\n    if scm.is_ignored(dvc_dir):\n        raise InitError(\n            f\"{dvc_dir} is ignored by your SCM tool. \\n\"\n            \"Make sure that it's tracked, \"\n            \"for example, by adding '!.dvc' to .gitignore.\"\n        )\n\n    if os.path.isdir(dvc_dir):\n        if not force:\n            raise InitError(f\"'{relpath(dvc_dir)}' exists. Use `-f` to force.\")\n\n        remove(dvc_dir)\n\n    os.mkdir(dvc_dir)\n\n    config = Config.init(dvc_dir)\n\n    if no_scm:\n        with config.edit() as conf:\n            conf[\"core\"][\"no_scm\"] = True\n\n    dvcignore = init_dvcignore(root_dir)\n\n    proj = Repo(root_dir)\n\n    proj.plots.templates.init()\n\n    scm.add(\n        [config.files[\"repo\"], dvcignore, proj.plots.templates.templates_dir]\n    )\n\n    if scm.ignore_file:\n        scm.add([os.path.join(dvc_dir, scm.ignore_file)])\n        logger.info(\"\\nYou can now commit the changes to git.\\n\")\n\n    return proj", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.run_Stage.run.if_not_dry_.if_not_no_commit_.self_commit_allow_missing": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.run_Stage.run.if_not_dry_.if_not_no_commit_.self_commit_allow_missing", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 484, "end_line": 514, "span_ids": ["Stage.run"], "tokens": 246}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    @rwlocked(read=[\"deps\"], write=[\"outs\"])\n    def run(\n        self,\n        dry=False,\n        no_commit=False,\n        force=False,\n        allow_missing=False,\n        **kwargs,\n    ):\n        if (self.cmd or self.is_import) and not self.frozen and not dry:\n            self.remove_outs(ignore_remove=False, force=False)\n\n        if not self.frozen and self.is_import:\n            jobs = kwargs.get(\"jobs\", None)\n            sync_import(self, dry, force, jobs)\n        elif not self.frozen and self.cmd:\n            run_stage(self, dry, force, **kwargs)\n        else:\n            args = (\n                (\"outputs\", \"frozen \") if self.frozen else (\"data sources\", \"\")\n            )\n            logger.info(\"Verifying %s in %s%s\", *args, self)\n            if not dry:\n                check_missing_outputs(self)\n\n        if not dry:\n            if kwargs.get(\"checkpoint_func\", None):\n                allow_missing = True\n            self.save(allow_missing=allow_missing)\n            if not no_commit:\n                self.commit(allow_missing=allow_missing)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/oss.py__pylint_disable_abstract_OSS.should_test.return.False": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/oss.py__pylint_disable_abstract_OSS.should_test.return.False", "embedding": null, "metadata": {"file_path": "tests/remotes/oss.py", "file_name": "oss.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 34, "span_ids": ["OSS", "OSS.get_url", "OSS.should_test", "docstring"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint:disable=abstract-method\nimport os\nimport uuid\n\nimport pytest\n\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.utils import env2bool\n\nfrom .base import Base\n\nTEST_OSS_REPO_BUCKET = \"dvc-test\"\nEMULATOR_OSS_ENDPOINT = \"127.0.0.1:{port}\"\nEMULATOR_OSS_ACCESS_KEY_ID = \"AccessKeyID\"\nEMULATOR_OSS_ACCESS_KEY_SECRET = \"AccessKeySecret\"\n\n\nclass OSS(Base, CloudURLInfo):\n    @staticmethod\n    def get_url():\n        return f\"oss://{TEST_OSS_REPO_BUCKET}/{uuid.uuid4()}\"\n\n    @staticmethod\n    def should_test():\n        do_test = env2bool(\"DVC_TEST_OSS\", undefined=None)\n        if do_test is not None:\n            return do_test\n\n        if os.getenv(\"OSS_ACCESS_KEY_ID\") and os.getenv(\n            \"OSS_ACCESS_KEY_SECRET\"\n        ):\n            return True\n\n        return False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/oss.py_oss_server_oss_server.return.endpoint": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/oss.py_oss_server_oss_server.return.endpoint", "embedding": null, "metadata": {"file_path": "tests/remotes/oss.py", "file_name": "oss.py", "file_type": "text/x-python", "category": "implementation", "start_line": 37, "end_line": 59, "span_ids": ["oss_server"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture(scope=\"session\")\ndef oss_server(test_config, docker_compose, docker_services):\n    import oss2\n\n    test_config.requires(\"oss\")\n    port = docker_services.port_for(\"oss\", 8880)\n    endpoint = EMULATOR_OSS_ENDPOINT.format(port=port)\n\n    def _check():\n        try:\n            auth = oss2.Auth(\n                EMULATOR_OSS_ACCESS_KEY_ID, EMULATOR_OSS_ACCESS_KEY_SECRET\n            )\n            oss2.Bucket(auth, endpoint, \"mybucket\").get_bucket_info()\n            return True\n        except oss2.exceptions.NoSuchBucket:\n            return True\n        except oss2.exceptions.OssError:\n            return False\n\n    docker_services.wait_until_responsive(timeout=30.0, pause=5, check=_check)\n\n    return endpoint", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/oss.py_oss_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/oss.py_oss_", "embedding": null, "metadata": {"file_path": "tests/remotes/oss.py", "file_name": "oss.py", "file_type": "text/x-python", "category": "implementation", "start_line": 62, "end_line": 90, "span_ids": ["oss", "real_oss"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef oss(oss_server):\n    url = OSS.get_url()\n    ret = OSS(url)\n    ret.config = {\n        \"url\": url,\n        \"oss_key_id\": EMULATOR_OSS_ACCESS_KEY_ID,\n        \"oss_key_secret\": EMULATOR_OSS_ACCESS_KEY_SECRET,\n        \"oss_endpoint\": oss_server,\n    }\n    return ret\n\n\n@pytest.fixture\ndef real_oss(test_config):\n    test_config.requires(\"oss\")\n    if not OSS.should_test():\n        pytest.skip(\"no real OSS\")\n\n    url = OSS.get_url()\n    ret = OSS(url)\n    ret.config = {\n        \"url\": url,\n        \"oss_key_id\": os.environ.get(\"OSS_ACCESS_KEY_ID\"),\n        \"oss_key_secret\": os.environ.get(\"OSS_ACCESS_KEY_SECRET\"),\n        \"oss_endpoint\": os.environ.get(\"OSS_ENDPOINT\"),\n    }\n    return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_symlink_test_move.assert_not_os_path_exists": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_symlink_test_move.assert_not_os_path_exists", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_connection.py", "file_name": "test_connection.py", "file_type": "text/x-python", "category": "test", "start_line": 108, "end_line": 142, "span_ids": ["test_copy", "test_symlink", "test_hardlink", "test_move"], "tokens": 249}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    platform.system() == \"Windows\",\n    reason=\"sftp symlink is not supported on Windows\",\n)\ndef test_symlink(tmp_dir, ssh_connection):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    ssh_connection.symlink(\"foo\", \"link\")\n    assert System.is_symlink(\"link\")\n\n\n@pytest.mark.skipif(\n    platform.system() == \"Windows\",\n    reason=\"hardlink is temporarily not supported on Windows\",\n)\ndef test_hardlink(tmp_dir, ssh_connection):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    ssh_connection.hardlink(\"foo\", \"link\")\n    assert System.is_hardlink(\"link\")\n\n\n@pytest.mark.skipif(\n    platform.system() == \"Windows\",\n    reason=\"copy is temporarily not supported on Windows\",\n)\ndef test_copy(tmp_dir, ssh_connection):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    ssh_connection.copy(\"foo\", \"link\")\n    assert filecmp.cmp(\"foo\", \"link\")\n\n\ndef test_move(tmp_dir, ssh_connection):\n    tmp_dir.gen(\"foo\", \"foo content\")\n    ssh_connection.move(\"foo\", \"copy\")\n    assert os.path.exists(\"copy\")\n    assert not os.path.exists(\"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_escapes_filepaths_for_md5_calculation_test_escapes_filepaths_for_copy.ssh_connection_execute_as": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_escapes_filepaths_for_md5_calculation_test_escapes_filepaths_for_copy.ssh_connection_execute_as", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_connection.py", "file_name": "test_connection.py", "file_type": "text/x-python", "category": "test", "start_line": 145, "end_line": 169, "span_ids": ["test_escapes_filepaths_for_md5_calculation", "test_escapes_filepaths_for_copy"], "tokens": 240}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"uname,md5command\", [(\"Linux\", \"md5sum\"), (\"Darwin\", \"md5\")]\n)\ndef test_escapes_filepaths_for_md5_calculation(\n    ssh_connection, uname, md5command, mocker\n):\n    fake_md5 = \"x\" * 32\n    uname_mock = mocker.PropertyMock(return_value=uname)\n    mocker.patch.object(SSHConnection, \"uname\", new_callable=uname_mock)\n    ssh_connection.execute = mocker.Mock(return_value=fake_md5)\n    ssh_connection.md5(SRC_PATH_WITH_SPECIAL_CHARACTERS)\n    ssh_connection.execute.assert_called_with(\n        f\"{md5command} {ESCAPED_SRC_PATH_WITH_SPECIAL_CHARACTERS}\"\n    )\n\n\ndef test_escapes_filepaths_for_copy(ssh_connection, mocker):\n    ssh_connection.execute = mocker.Mock()\n    ssh_connection.copy(\n        SRC_PATH_WITH_SPECIAL_CHARACTERS, DEST_PATH_WITH_SPECIAL_CHARACTERS\n    )\n    ssh_connection.execute.assert_called_with(\n        f\"cp {ESCAPED_SRC_PATH_WITH_SPECIAL_CHARACTERS} \"\n        + f\"{ESCAPED_DEST_PATH_WITH_SPECIAL_CHARACTERS}\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_escapes_filepaths_for_reflink_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/ssh/test_connection.py_test_escapes_filepaths_for_reflink_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/ssh/test_connection.py", "file_name": "test_connection.py", "file_type": "text/x-python", "category": "test", "start_line": 172, "end_line": 200, "span_ids": ["test_escapes_filepaths_for_reflink", "test_escapes_filepaths_for_hardlink"], "tokens": 252}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"uname,cp_command\", [(\"Linux\", \"cp --reflink\"), (\"Darwin\", \"cp -c\")]\n)\ndef test_escapes_filepaths_for_reflink(\n    ssh_connection, uname, cp_command, mocker\n):\n    uname_mock = mocker.PropertyMock(return_value=uname)\n    mocker.patch.object(SSHConnection, \"uname\", new_callable=uname_mock)\n    ssh_connection.execute = mocker.Mock()\n    ssh_connection.reflink(\n        SRC_PATH_WITH_SPECIAL_CHARACTERS, DEST_PATH_WITH_SPECIAL_CHARACTERS\n    )\n    ssh_connection.execute.assert_called_with(\n        f\"{cp_command} \"\n        + f\"{ESCAPED_SRC_PATH_WITH_SPECIAL_CHARACTERS} \"\n        + f\"{ESCAPED_DEST_PATH_WITH_SPECIAL_CHARACTERS}\"\n    )\n\n\ndef test_escapes_filepaths_for_hardlink(ssh_connection, mocker):\n    ssh_connection.execute = mocker.Mock()\n    ssh_connection.hardlink(\n        SRC_PATH_WITH_SPECIAL_CHARACTERS, DEST_PATH_WITH_SPECIAL_CHARACTERS\n    )\n    ssh_connection.execute.assert_called_with(\n        f\"ln {ESCAPED_SRC_PATH_WITH_SPECIAL_CHARACTERS} \"\n        + f\"{ESCAPED_DEST_PATH_WITH_SPECIAL_CHARACTERS}\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_shared_stage_cache_test_shared_stage_cache.assert__mode_cache_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_shared_stage_cache_test_shared_stage_cache.assert__mode_cache_file_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 165, "end_line": 208, "span_ids": ["test_shared_stage_cache"], "tokens": 372}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_shared_stage_cache(tmp_dir, dvc, run_copy):\n    import stat\n\n    from dvc.cache import Cache\n\n    tmp_dir.gen(\"foo\", \"foo\")\n\n    with dvc.config.edit() as config:\n        config[\"cache\"][\"shared\"] = \"group\"\n\n    dvc.cache = Cache(dvc)\n\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    parent_cache_dir = os.path.join(dvc.stage_cache.cache_dir, \"88\",)\n    cache_dir = os.path.join(\n        parent_cache_dir,\n        \"883395068439203a9de3d1e1649a16e9027bfd1ab5dab4f438d321c4a928b328\",\n    )\n    cache_file = os.path.join(\n        cache_dir,\n        \"e42b7ebb9bc5ac4bccab769c8d1338914dad25d7ffecc8671dbd4581bad4aa15\",\n    )\n\n    # sanity check\n    assert os.path.isdir(cache_dir)\n    assert os.listdir(cache_dir) == [os.path.basename(cache_file)]\n    assert os.path.isfile(cache_file)\n\n    def _mode(path):\n        return stat.S_IMODE(os.stat(path).st_mode)\n\n    if os.name == \"nt\":\n        dir_mode = 0o777\n        file_mode = 0o666\n    else:\n        dir_mode = 0o775\n        file_mode = 0o664\n\n    assert _mode(dvc.cache.local.cache_dir) == dir_mode\n    assert _mode(dvc.stage_cache.cache_dir) == dir_mode\n    assert _mode(parent_cache_dir) == dir_mode\n    assert _mode(cache_dir) == dir_mode\n    assert _mode(cache_file) == file_mode", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_from_dataclasses_import_a_test_context_dict_ignores_keys_except_str.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_from_dataclasses_import_a_test_context_dict_ignores_keys_except_str.None_3", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 47, "span_ids": ["imports", "test_context", "test_context_dict_ignores_keys_except_str"], "tokens": 268}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dataclasses import asdict\nfrom math import pi\nfrom unittest.mock import mock_open\n\nimport pytest\n\nfrom dvc.parsing import DEFAULT_PARAMS_FILE\nfrom dvc.parsing.context import (\n    Context,\n    CtxDict,\n    CtxList,\n    KeyNotInContext,\n    MergeError,\n    ParamsLoadError,\n    Value,\n    recurse_not_a_node,\n)\nfrom dvc.tree.local import LocalTree\nfrom dvc.utils import relpath\nfrom dvc.utils.serialize import dump_yaml, dumps_yaml\n\n\ndef test_context():\n    context = Context({\"foo\": \"bar\"})\n    assert context[\"foo\"] == Value(\"bar\")\n\n    context = Context(foo=\"bar\")\n    assert context[\"foo\"] == Value(\"bar\")\n\n    context[\"foobar\"] = \"foobar\"\n    assert context[\"foobar\"] == Value(\"foobar\")\n\n    del context[\"foobar\"]\n    assert \"foobar\" not in context\n    assert \"foo\" in context\n\n    with pytest.raises(KeyError):\n        _ = context[\"foobar\"]\n\n\ndef test_context_dict_ignores_keys_except_str():\n    c = Context({\"one\": 1, 3: 3})\n    assert \"one\" in c\n    assert 3 not in c\n\n    c[3] = 3\n    assert 3 not in c", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_context_list_test_context_list.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_context_list_test_context_list.None_4", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 38, "end_line": 52, "span_ids": ["test_context_list"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_context_list():\n    lst = [\"foo\", \"bar\", \"baz\"]\n    context = Context(lst=lst)\n\n    assert context[\"lst\"] == CtxList(lst)\n    assert context[\"lst\"][0] == Value(\"foo\")\n    del context[\"lst\"][-1]\n\n    assert \"baz\" not in context\n\n    with pytest.raises(IndexError):\n        _ = context[\"lst\"][3]\n\n    context[\"lst\"].insert(0, \"baz\")\n    assert context[\"lst\"] == CtxList([\"baz\"] + lst[:2])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_context_setitem_getitem_test_context_setitem_getitem.with_pytest_raises_TypeEr.context_set_1_2_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_context_setitem_getitem_test_context_setitem_getitem.with_pytest_raises_TypeEr.context_set_1_2_3", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 55, "end_line": 91, "span_ids": ["test_context_setitem_getitem"], "tokens": 327}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_context_setitem_getitem():\n    context = Context()\n    lst = [1, 2, \"three\", True, pi, b\"bytes\", None]\n    context[\"list\"] = lst\n\n    assert isinstance(context[\"list\"], CtxList)\n    assert context[\"list\"] == CtxList(lst)\n    for i, val in enumerate(lst):\n        assert context[\"list\"][i] == Value(val)\n\n    d = {\n        \"foo\": \"foo\",\n        \"bar\": \"bar\",\n        \"list\": [\n            {\"foo0\": \"foo0\", \"bar0\": \"bar0\"},\n            {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n        ],\n    }\n    context[\"data\"] = d\n\n    assert isinstance(context[\"data\"], CtxDict)\n    assert context[\"data\"] == CtxDict(d)\n    assert context[\"data\"][\"foo\"] == Value(\"foo\")\n    assert context[\"data\"][\"bar\"] == Value(\"bar\")\n\n    assert isinstance(context[\"data\"][\"list\"], CtxList)\n    assert context[\"data\"][\"list\"] == CtxList(d[\"list\"])\n\n    for i, val in enumerate(d[\"list\"]):\n        c = context[\"data\"][\"list\"][i]\n        assert isinstance(c, CtxDict)\n        assert c == CtxDict(val)\n        assert c[f\"foo{i}\"] == Value(f\"foo{i}\")\n        assert c[f\"bar{i}\"] == Value(f\"bar{i}\")\n\n    with pytest.raises(TypeError):\n        context[\"set\"] = {1, 2, 3}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_loop_context_test_repr.assert_str_context_st": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_loop_context_test_repr.assert_str_context_st", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 94, "end_line": 115, "span_ids": ["test_repr", "test_loop_context"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_loop_context():\n    context = Context({\"foo\": \"foo\", \"bar\": \"bar\", \"lst\": [1, 2, 3]})\n\n    assert list(context) == [\"foo\", \"bar\", \"lst\"]\n    assert len(context) == 3\n\n    assert list(context[\"lst\"]) == [Value(i) for i in [1, 2, 3]]\n    assert len(context[\"lst\"]) == 3\n\n    assert list(context.items()) == [\n        (\"foo\", Value(\"foo\")),\n        (\"bar\", Value(\"bar\")),\n        (\"lst\", CtxList([1, 2, 3])),\n    ]\n\n\ndef test_repr():\n    data = {\"foo\": \"foo\", \"bar\": \"bar\", \"lst\": [1, 2, 3]}\n    context = Context(data)\n\n    assert repr(context) == repr(data)\n    assert str(context) == str(data)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_select_test_select.for_i___in_enumerate_d_.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_select_test_select.for_i___in_enumerate_d_.None_1", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 129, "end_line": 156, "span_ids": ["test_select"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_select():\n    context = Context(foo=\"foo\", bar=\"bar\", lst=[1, 2, 3])\n\n    assert context.select(\"foo\") == Value(\"foo\")\n    assert context.select(\"bar\") == Value(\"bar\")\n    assert context.select(\"lst\") == CtxList([1, 2, 3])\n    assert context.select(\"lst.0\") == Value(1)\n\n    with pytest.raises(KeyNotInContext):\n        context.select(\"baz\")\n\n    d = {\n        \"lst\": [\n            {\"foo0\": \"foo0\", \"bar0\": \"bar0\"},\n            {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n        ]\n    }\n    context = Context(d)\n    assert context.select(\"lst\") == CtxList(d[\"lst\"])\n    assert context.select(\"lst.0\") == CtxDict(d[\"lst\"][0])\n    assert context.select(\"lst.1\") == CtxDict(d[\"lst\"][1])\n\n    with pytest.raises(KeyNotInContext):\n        context.select(\"lst.2\")\n\n    for i, _ in enumerate(d[\"lst\"]):\n        assert context.select(f\"lst.{i}.foo{i}\") == Value(f\"foo{i}\")\n        assert context.select(f\"lst.{i}.bar{i}\") == Value(f\"bar{i}\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_merge_list_test_overwrite_with_setitem.assert_context_d_Va": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_merge_list_test_overwrite_with_setitem.assert_context_d_Va", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 197, "end_line": 215, "span_ids": ["test_overwrite_with_setitem", "test_merge_list"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_merge_list():\n    c1 = Context(lst=[1, 2, 3])\n    with pytest.raises(MergeError):\n        # cannot overwrite by default\n        c1.merge_update({\"lst\": [10, 11, 12]})\n\n    # lists are never merged\n    c1.merge_update({\"lst\": [10, 11, 12]}, overwrite=True)\n    node = c1.select(\"lst\")\n    assert node == [10, 11, 12]\n    assert isinstance(node, CtxList)\n    assert node[0] == Value(10)\n\n\ndef test_overwrite_with_setitem():\n    context = Context(foo=\"foo\", d={\"bar\": \"bar\", \"baz\": \"baz\"})\n    context[\"d\"] = \"overwrite\"\n    assert \"d\" in context\n    assert context[\"d\"] == Value(\"overwrite\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_load_from_test_load_from.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_load_from_test_load_from.None_5", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 219, "end_line": 257, "span_ids": ["test_load_from"], "tokens": 328}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_from(mocker):\n    d = {\"x\": {\"y\": {\"z\": 5}, \"lst\": [1, 2, 3]}, \"foo\": \"foo\"}\n    tree = mocker.Mock(\n        open=mock_open(read_data=dumps_yaml(d)),\n        **{\"exists.return_value\": True, \"isdir.return_value\": False},\n    )\n    file = \"params.yaml\"\n    c = Context.load_from(tree, file)\n\n    assert asdict(c[\"x\"].meta) == {\n        \"source\": file,\n        \"dpaths\": [\"x\"],\n        \"local\": False,\n    }\n    assert asdict(c[\"foo\"].meta) == {\n        \"source\": file,\n        \"local\": False,\n        \"dpaths\": [\"foo\"],\n    }\n    assert asdict(c[\"x\"][\"y\"].meta) == {\n        \"source\": file,\n        \"dpaths\": [\"x\", \"y\"],\n        \"local\": False,\n    }\n    assert asdict(c[\"x\"][\"y\"][\"z\"].meta) == {\n        \"source\": file,\n        \"dpaths\": [\"x\", \"y\", \"z\"],\n        \"local\": False,\n    }\n    assert asdict(c[\"x\"][\"lst\"].meta) == {\n        \"source\": file,\n        \"dpaths\": [\"x\", \"lst\"],\n        \"local\": False,\n    }\n    assert asdict(c[\"x\"][\"lst\"][0].meta) == {\n        \"source\": file,\n        \"dpaths\": [\"x\", \"lst\", \"0\"],\n        \"local\": False,\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_path_info.py_test_path_info_as_posix_test_path_info_as_posix.assert_PathInfo_path_as_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_path_info.py_test_path_info_as_posix_test_path_info_as_posix.assert_PathInfo_path_as_", "embedding": null, "metadata": {"file_path": "tests/unit/test_path_info.py", "file_name": "test_path_info.py", "file_type": "text/x-python", "category": "test", "start_line": 62, "end_line": 88, "span_ids": ["test_path_info_as_posix"], "tokens": 267}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"path, as_posix, osname\",\n    [\n        (\"/some/abs/path\", \"/some/abs/path\", \"posix\"),\n        (\"some/rel/path\", \"some/rel/path\", \"posix\"),\n        (\"../some/rel/path\", \"../some/rel/path\", \"posix\"),\n        (\"windows\\\\relpath\", \"windows/relpath\", \"nt\"),\n        (\"..\\\\windows\\\\rel\\\\path\", \"../windows/rel/path\", \"nt\"),\n        # These ones are to test that no matter how layered this relpath is,\n        # we don't accidentally round it over. E.g. how\n        #\n        #  import os\n        #  os.chdir(\"/\")\n        #  os.path.relpath(\"../../path\")\n        #\n        # results in \"path\".\n        (\"\\\\\".join([\"..\"] * TEST_DEPTH), \"/\".join([\"..\"] * TEST_DEPTH), \"nt\"),\n        (\n            \"/\".join([\"..\"] * TEST_DEPTH),\n            \"/\".join([\"..\"] * TEST_DEPTH),\n            \"posix\",\n        ),\n    ],\n)\ndef test_path_info_as_posix(mocker, path, as_posix, osname):\n    mocker.patch(\"os.name\", osname)\n    assert PathInfo(path).as_posix() == as_posix", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_path_info.py_test_url_replace_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_path_info.py_test_url_replace_path_", "embedding": null, "metadata": {"file_path": "tests/unit/test_path_info.py", "file_name": "test_path_info.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 120, "span_ids": ["test_relative_to_different_subpath", "test_url_replace_path"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_url_replace_path():\n    url = \"https://user@test.com/original/path;p=par?q=quer#frag\"\n\n    u = HTTPURLInfo(url)\n    new_u = u.replace(\"/new/path\")\n\n    assert u.path == \"/original/path\"\n    assert new_u.path == \"/new/path\"\n\n    assert u.scheme == new_u.scheme\n    assert u.host == new_u.host\n    assert u.user == new_u.user\n    assert u.params == new_u.params\n    assert u.query == new_u.query\n    assert u.fragment == new_u.fragment\n\n\n@pytest.mark.parametrize(\n    \"p1, p2\",\n    [\n        (\"/foo/bar\", \"/baz\"),\n        (\"/baz\", \"/foo/bar\"),\n        (\"/foo/bar\", \"../baz\"),\n        (\"../baz\", \"/foo/bar\"),\n    ],\n)\ndef test_relative_to_different_subpath(p1, p2):\n    expected = PathInfo(os.path.relpath(p1, p2))\n    assert PathInfo(p1).relative_to(PathInfo(p2)) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_RemoteCacheRequiredError_MergeError.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_RemoteCacheRequiredError_MergeError.pass", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 308, "end_line": 340, "span_ids": ["NoOutputOrStageError", "RemoteCacheRequiredError.__init__", "NoOutputOrStageError.__init__", "MergeError", "RemoteCacheRequiredError", "IsADirectoryError"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class RemoteCacheRequiredError(DvcException):\n    def __init__(self, path_info):\n        super().__init__(\n            (\n                \"Current operation was unsuccessful because '{}' requires \"\n                \"existing cache on '{}' remote. See {} for information on how \"\n                \"to set up remote cache.\"\n            ).format(\n                path_info,\n                path_info.scheme,\n                format_link(\"https://man.dvc.org/config#cache\"),\n            )\n        )\n\n\nclass IsADirectoryError(DvcException):  # noqa,pylint:disable=redefined-builtin\n    \"\"\"Raised when a file operation is requested on a directory.\"\"\"\n\n\nclass NoOutputOrStageError(DvcException):\n    \"\"\"\n    Raised when the target is neither an output nor a stage name in dvc.yaml\n    \"\"\"\n\n    def __init__(self, target, file):\n        super().__init__(\n            f\"'{target}' \"\n            f\"does not exist as an output or a stage name in '{file}'\"\n        )\n\n\nclass MergeError(DvcException):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_CacheLinkError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_CacheLinkError_", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 343, "end_line": 356, "span_ids": ["CacheLinkError", "CacheLinkError.__init__"], "tokens": 106}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CacheLinkError(DvcException):\n    SUPPORT_LINK = \"See {} for more information.\".format(\n        format_link(\n            \"https://dvc.org/doc/user-guide/troubleshooting#cache-types\"\n        )\n    )\n\n    def __init__(self, path_infos):\n        msg = \"No possible cache link types for '{}'. {}\".format(\n            \", \".join([str(path) for path in path_infos]), self.SUPPORT_LINK,\n        )\n        super().__init__(msg)\n        self.path_infos = path_infos", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo._get_repo_dirs_Repo._get_repo_dirs.return.root_dir_dvc_dir_tmp_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo._get_repo_dirs_Repo._get_repo_dirs.return.root_dir_dvc_dir_tmp_di", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 96, "end_line": 129, "span_ids": ["Repo._get_repo_dirs"], "tokens": 255}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    def _get_repo_dirs(\n        self,\n        root_dir: str = None,\n        scm: Base = None,\n        rev: str = None,\n        uninitialized: bool = False,\n    ):\n        assert bool(scm) == bool(rev)\n\n        from dvc.scm import SCM\n        from dvc.scm.git import Git\n        from dvc.utils.fs import makedirs\n\n        dvc_dir = None\n        tmp_dir = None\n        try:\n            tree = scm.get_tree(rev) if isinstance(scm, Git) and rev else None\n            root_dir = self.find_root(root_dir, tree)\n            dvc_dir = os.path.join(root_dir, self.DVC_DIR)\n            tmp_dir = os.path.join(dvc_dir, \"tmp\")\n            makedirs(tmp_dir, exist_ok=True)\n        except NotDvcRepoError:\n            if not uninitialized:\n                raise\n\n            try:\n                scm = SCM(root_dir or os.curdir)\n            except (SCMError, InvalidGitRepositoryError):\n                scm = SCM(os.curdir, no_scm=True)\n\n            assert isinstance(scm, Base)\n            root_dir = scm.root_dir\n\n        return root_dir, dvc_dir, tmp_dir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.__init___Repo.__repr__.return.f_self___class_____name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.__init___Repo.__repr__.return.f_self___class_____name_", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 124, "end_line": 214, "span_ids": ["Repo.__repr__", "Repo.tree_4", "Repo.tree", "Repo.scm", "Repo.experiments", "Repo.__init__"], "tokens": 668}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    def __init__(\n        self,\n        root_dir=None,\n        scm=None,\n        rev=None,\n        subrepos=False,\n        uninitialized=False,\n        config=None,\n    ):\n        from dvc.cache import Cache\n        from dvc.data_cloud import DataCloud\n        from dvc.lock import LockNoop, make_lock\n        from dvc.repo.metrics import Metrics\n        from dvc.repo.params import Params\n        from dvc.repo.plots import Plots\n        from dvc.repo.stage import StageLoad\n        from dvc.stage.cache import StageCache\n        from dvc.state import State, StateNoop\n        from dvc.tree.local import LocalTree\n\n        self.root_dir, self.dvc_dir, self.tmp_dir = self._get_repo_dirs(\n            root_dir=root_dir, scm=scm, rev=rev, uninitialized=uninitialized\n        )\n\n        tree_kwargs = {\"use_dvcignore\": True, \"dvcignore_root\": self.root_dir}\n        if scm:\n            self.tree = scm.get_tree(rev, **tree_kwargs)\n        else:\n            self.tree = LocalTree(self, {\"url\": self.root_dir}, **tree_kwargs)\n\n        self.config = Config(self.dvc_dir, tree=self.tree, config=config)\n        self._scm = scm\n\n        # used by RepoTree to determine if it should traverse subrepos\n        self.subrepos = subrepos\n\n        self.cache = Cache(self)\n        self.cloud = DataCloud(self)\n        self.stage = StageLoad(self)\n\n        if scm or not self.dvc_dir:\n            self.lock = LockNoop()\n            self.state = StateNoop()\n        else:\n            self.lock = make_lock(\n                os.path.join(self.tmp_dir, \"lock\"),\n                tmp_dir=self.tmp_dir,\n                hardlink_lock=self.config[\"core\"].get(\"hardlink_lock\", False),\n                friendly=True,\n            )\n\n            # NOTE: storing state and link_state in the repository itself to\n            # avoid any possible state corruption in 'shared cache dir'\n            # scenario.\n            self.state = State(self)\n            self.stage_cache = StageCache(self)\n\n            self._ignore()\n\n        self.metrics = Metrics(self)\n        self.plots = Plots(self)\n        self.params = Params(self)\n        self.stage_collection_error_handler = None\n        self._lock_depth = 0\n\n    @cached_property\n    def scm(self):\n        from dvc.scm import SCM\n\n        no_scm = self.config[\"core\"].get(\"no_scm\", False)\n        return self._scm if self._scm else SCM(self.root_dir, no_scm=no_scm)\n\n    @cached_property\n    def experiments(self):\n        from dvc.repo.experiments import Experiments\n\n        return Experiments(self)\n\n    @property\n    def tree(self) -> \"BaseTree\":\n        return self._tree\n\n    @tree.setter\n    def tree(self, tree: \"BaseTree\"):\n        self._tree = tree\n        # Our graph cache is no longer valid, as it was based on the previous\n        # tree.\n        self._reset()\n\n    def __repr__(self):\n        return f\"{self.__class__.__name__}: '{self.root_dir}'\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.find_root_Repo.find_root.raise_NotDvcRepoError_mes": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.find_root_Repo.find_root.raise_NotDvcRepoError_mes", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 219, "end_line": 243, "span_ids": ["Repo.find_root"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    @classmethod\n    def find_root(cls, root=None, tree=None) -> str:\n        root_dir = os.path.realpath(root or os.curdir)\n\n        if tree:\n            if tree.isdir(os.path.join(root_dir, cls.DVC_DIR)):\n                return root_dir\n            raise NotDvcRepoError(f\"'{root}' does not contain DVC directory\")\n\n        if not os.path.isdir(root_dir):\n            raise NotDvcRepoError(f\"directory '{root}' does not exist\")\n\n        while True:\n            dvc_dir = os.path.join(root_dir, cls.DVC_DIR)\n            if os.path.isdir(dvc_dir):\n                return root_dir\n            if os.path.ismount(root_dir):\n                break\n            root_dir = os.path.dirname(root_dir)\n\n        message = (\n            \"you are not inside of a DVC repository \"\n            \"(checked up to mount point '{}')\"\n        ).format(root_dir)\n        raise NotDvcRepoError(message)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py__process_stages__process_stages.return.link_failures": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py__process_stages__process_stages.return.link_failures", "embedding": null, "metadata": {"file_path": "dvc/repo/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 106, "end_line": 131, "span_ids": ["_process_stages"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _process_stages(repo, stages, no_commit, pbar):\n    link_failures = []\n\n    with Tqdm(\n        total=len(stages),\n        desc=\"Processing\",\n        unit=\"file\",\n        disable=len(stages) == 1,\n    ) as pbar_stages:\n        for stage in stages:\n            try:\n                stage.save()\n            except OutputDoesNotExistError:\n                pbar.n -= 1\n                raise\n\n            try:\n                if not no_commit:\n                    stage.commit()\n            except CacheLinkError:\n                link_failures.append(stage)\n\n            Dvcfile(repo, stage.path).dump(stage)\n            pbar_stages.update()\n\n    return link_failures", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.dumpd_Stage.commit.if_link_failures_.raise_CacheLinkError_link": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.dumpd_Stage.commit.if_link_failures_.raise_CacheLinkError_link", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 397, "end_line": 460, "span_ids": ["Stage.compute_md5", "Stage.save_deps", "Stage.ignore_outs", "Stage.changed_entries", "Stage.dumpd", "Stage._changed_entries", "Stage._changed_stage_entry", "Stage.save", "Stage.save_outs", "Stage.commit"], "tokens": 428}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    def dumpd(self):\n        return get_dump(self)\n\n    def compute_md5(self):\n        # `dvc add`ed files don't need stage md5\n        if self.is_data_source and not (self.is_import or self.is_repo_import):\n            m = None\n        else:\n            m = compute_md5(self)\n        logger.debug(f\"Computed {self} md5: '{m}'\")\n        return m\n\n    def save(self, allow_missing=False):\n        self.save_deps()\n        self.save_outs(allow_missing=allow_missing)\n        self.md5 = self.compute_md5()\n\n        self.repo.stage_cache.save(self)\n\n    def save_deps(self):\n        for dep in self.deps:\n            dep.save()\n\n    def save_outs(self, allow_missing=False):\n        for out in self.outs:\n            try:\n                out.save()\n            except OutputDoesNotExistError:\n                if not (allow_missing or out.checkpoint):\n                    raise\n\n    def ignore_outs(self):\n        for out in self.outs:\n            out.ignore()\n\n    @staticmethod\n    def _changed_entries(entries):\n        return [str(entry) for entry in entries if entry.workspace_status()]\n\n    def _changed_stage_entry(self):\n        return f\"'md5' of {self} changed.\"\n\n    def changed_entries(self):\n        changed_deps = self._changed_entries(self.deps)\n        changed_outs = self._changed_entries(self.outs)\n        return (\n            changed_deps,\n            changed_outs,\n            self._changed_stage_entry() if self.changed_stage() else None,\n        )\n\n    @rwlocked(write=[\"outs\"])\n    def commit(self, allow_missing=False):\n        link_failures = []\n        for out in self.outs:\n            try:\n                out.commit()\n            except OutputDoesNotExistError:\n                if not (allow_missing or out.checkpoint):\n                    raise\n            except CacheLinkError:\n                link_failures.append(out.path_info)\n        if link_failures:\n            raise CacheLinkError(link_failures)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_get_baseline_test_get_baseline.None_6": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_get_baseline_test_get_baseline.None_6", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 196, "end_line": 221, "span_ids": ["test_get_baseline"], "tokens": 304}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_baseline(tmp_dir, scm, dvc, exp_stage):\n    from dvc.repo.experiments.base import EXPS_STASH\n\n    init_rev = scm.get_rev()\n    assert dvc.experiments.get_baseline(init_rev) is None\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp_rev = first(results)\n    assert dvc.experiments.get_baseline(exp_rev) == init_rev\n\n    dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"], queue=True)\n    assert dvc.experiments.get_baseline(f\"{EXPS_STASH}@{{0}}\") == init_rev\n\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"promote exp\")\n    promote_rev = scm.get_rev()\n    assert dvc.experiments.get_baseline(promote_rev) is None\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=4\"])\n    exp_rev = first(results)\n    assert dvc.experiments.get_baseline(exp_rev) == promote_rev\n\n    dvc.experiments.run(exp_stage.addressing, params=[\"foo=5\"], queue=True)\n    assert dvc.experiments.get_baseline(f\"{EXPS_STASH}@{{0}}\") == promote_rev\n    print(\"stash 1\")\n    assert dvc.experiments.get_baseline(f\"{EXPS_STASH}@{{1}}\") == init_rev", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink_TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink.test.with_patch_object_.self_assertTrue_os_path_e": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink_TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink.test.with_patch_object_.self_assertTrue_os_path_e", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 424, "end_line": 446, "span_ids": ["TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink.test", "TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink(TestDvc):\n    def test(self):\n        def is_symlink_true_below_dvc_root(path):\n            if path == os.path.dirname(self.dvc.root_dir):\n                return True\n            return False\n\n        with patch.object(\n            System, \"is_symlink\", side_effect=is_symlink_true_below_dvc_root\n        ):\n\n            ret = main([\"add\", self.DATA])\n            self.assertEqual(0, ret)\n\n            stage_file_path_on_data_below_symlink = (\n                os.path.basename(self.DATA) + DVC_FILE_SUFFIX\n            )\n            self.assertFalse(\n                os.path.exists(stage_file_path_on_data_below_symlink)\n            )\n\n            stage_file_path = self.DATA + DVC_FILE_SUFFIX\n            self.assertTrue(os.path.exists(stage_file_path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_symlink_file_test_add_symlink_file.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_symlink_file_test_add_symlink_file.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 765, "end_line": 788, "span_ids": ["test_add_symlink_file"], "tokens": 305}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_symlink_file(tmp_dir, dvc):\n    tmp_dir.gen({\"dir\": {\"bar\": \"bar\"}})\n\n    (tmp_dir / \"dir\" / \"foo\").symlink_to(os.path.join(\".\", \"bar\"))\n\n    dvc.add(os.path.join(\"dir\", \"foo\"))\n\n    assert not (tmp_dir / \"foo.dvc\").exists()\n    assert (tmp_dir / \"dir\" / \"foo.dvc\").exists()\n    assert not (tmp_dir / \"dir\" / \"foo\").is_symlink()\n    assert not (tmp_dir / \"dir\" / \"bar\").is_symlink()\n    assert (tmp_dir / \"dir\" / \"foo\").read_text() == \"bar\"\n    assert (tmp_dir / \"dir\" / \"bar\").read_text() == \"bar\"\n\n    assert (tmp_dir / \".dvc\" / \"cache\").read_text() == {\n        \"37\": {\"b51d194a7513e45b56f6524f2d51f2\": \"bar\"}\n    }\n    assert not (\n        tmp_dir / \".dvc\" / \"cache\" / \"37\" / \"b51d194a7513e45b56f6524f2d51f2\"\n    ).is_symlink()\n\n    # Test that subsequent add succeeds\n    # See https://github.com/iterative/dvc/issues/4654\n    dvc.add(os.path.join(\"dir\", \"foo\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_symlink_dir_test_add_symlink_dir.with_pytest_raises_DvcExc.dvc_add_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_symlink_dir_test_add_symlink_dir.with_pytest_raises_DvcExc.dvc_add_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 791, "end_line": 806, "span_ids": ["test_add_symlink_dir"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"external\", [True, False])\ndef test_add_symlink_dir(make_tmp_dir, tmp_dir, dvc, external):\n    if external:\n        data_dir = make_tmp_dir(\"data\")\n        data_dir.gen({\"foo\": \"foo\"})\n        target = os.fspath(data_dir)\n    else:\n        tmp_dir.gen({\"data\": {\"foo\": \"foo\"}})\n        target = os.path.join(\".\", \"data\")\n\n    tmp_dir.gen({\"data\": {\"foo\": \"foo\"}})\n\n    (tmp_dir / \"dir\").symlink_to(target)\n\n    with pytest.raises(DvcException):\n        dvc.add(\"dir\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_file_in_symlink_dir_test_add_file_in_symlink_dir.with_pytest_raises_DvcExc.dvc_add_os_path_join_dir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_file_in_symlink_dir_test_add_file_in_symlink_dir.with_pytest_raises_DvcExc.dvc_add_os_path_join_dir", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 809, "end_line": 822, "span_ids": ["test_add_file_in_symlink_dir"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"external\", [True, False])\ndef test_add_file_in_symlink_dir(make_tmp_dir, tmp_dir, dvc, external):\n    if external:\n        data_dir = make_tmp_dir(\"data\")\n        data_dir.gen({\"dir\": {\"foo\": \"foo\"}})\n        target = os.fspath(data_dir / \"dir\")\n    else:\n        tmp_dir.gen({\"data\": {\"foo\": \"foo\"}})\n        target = os.path.join(\".\", \"data\")\n\n    (tmp_dir / \"dir\").symlink_to(target)\n\n    with pytest.raises(DvcException):\n        dvc.add(os.path.join(\"dir\", \"foo\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_logging_test_get_repo_file.assert_tmp_dir_file_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_logging_test_get_repo_file.assert_tmp_dir_file_i", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["test_get_repo_file", "imports"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nimport mock\nimport pytest\n\nfrom dvc.cache import Cache\nfrom dvc.exceptions import ConfirmRemoveError, PathMissingError\nfrom dvc.external_repo import IsADVCRepoError\nfrom dvc.main import main\nfrom dvc.repo import Repo\nfrom dvc.repo.get import GetDVCFileError\nfrom dvc.system import System\nfrom dvc.utils.fs import makedirs\nfrom tests.unit.tree.test_repo import make_subrepo\n\n\ndef test_get_repo_file(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file\")\n\n    Repo.get(os.fspath(erepo_dir), \"file\", \"file_imported\")\n\n    assert os.path.isfile(\"file_imported\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_file_replace_without_confirmation_test_get_repo_file_replace_without_confirmation.assert_tmp_dir_file_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_file_replace_without_confirmation_test_get_repo_file_replace_without_confirmation.assert_tmp_dir_file_i", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 28, "end_line": 41, "span_ids": ["test_get_repo_file_replace_without_confirmation"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_repo_file_replace_without_confirmation(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file\")\n        erepo_dir.dvc_gen(\n            \"file2\", \"something different\", commit=\"create file2\"\n        )\n\n    Repo.get(os.fspath(erepo_dir), \"file\", \"file_imported\")\n    # getting another file with a name that already exists in Repo.\n    with pytest.raises(ConfirmRemoveError):\n        Repo.get(os.fspath(erepo_dir), \"file2\", \"file_imported\")\n\n    assert os.path.isfile(\"file_imported\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_file_replace_yes_test_get_repo_file_replace_yes.assert_tmp_dir_file_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_file_replace_yes_test_get_repo_file_replace_yes.assert_tmp_dir_file_i", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 44, "end_line": 57, "span_ids": ["test_get_repo_file_replace_yes"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_repo_file_replace_yes(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file\")\n        erepo_dir.dvc_gen(\n            \"file2\", \"something different\", commit=\"create file2\"\n        )\n\n    Repo.get(os.fspath(erepo_dir), \"file\", \"file_imported\")\n    # getting another file with a name that already exists in Repo.\n    with mock.patch(\"dvc.prompt.confirm\", return_value=True):\n        Repo.get(os.fspath(erepo_dir), \"file2\", \"file_imported\")\n\n    assert os.path.isfile(\"file_imported\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"something different\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_file_replace_no_test_get_repo_file_replace_no.assert_tmp_dir_file_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_file_replace_no_test_get_repo_file_replace_no.assert_tmp_dir_file_i", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 60, "end_line": 74, "span_ids": ["test_get_repo_file_replace_no"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_repo_file_replace_no(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"file\", \"contents\", commit=\"create file\")\n        erepo_dir.dvc_gen(\n            \"file2\", \"something different\", commit=\"create file2\"\n        )\n\n    Repo.get(os.fspath(erepo_dir), \"file\", \"file_imported\")\n    # getting another file with a name that already exists in Repo.\n    with mock.patch(\"dvc.prompt.confirm\", return_value=False):\n        with pytest.raises(ConfirmRemoveError):\n            Repo.get(os.fspath(erepo_dir), \"file2\", \"file_imported\")\n\n    assert os.path.isfile(\"file_imported\")\n    assert (tmp_dir / \"file_imported\").read_text() == \"contents\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_dir_test_get_git_file.assert_tmp_dir_dst_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_get.py_test_get_repo_dir_test_get_git_file.assert_tmp_dir_dst_re", "embedding": null, "metadata": {"file_path": "tests/func/test_get.py", "file_name": "test_get.py", "file_type": "text/x-python", "category": "test", "start_line": 77, "end_line": 97, "span_ids": ["test_get_git_file", "test_get_repo_dir"], "tokens": 183}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_repo_dir(tmp_dir, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen({\"dir\": {\"file\": \"contents\"}}, commit=\"create dir\")\n\n    Repo.get(os.fspath(erepo_dir), \"dir\", \"dir_imported\")\n\n    assert (tmp_dir / \"dir_imported\").read_text() == {\"file\": \"contents\"}\n\n\n@pytest.mark.parametrize(\n    \"erepo\", [pytest.lazy_fixture(\"git_dir\"), pytest.lazy_fixture(\"erepo_dir\")]\n)\ndef test_get_git_file(tmp_dir, erepo):\n    src = \"some_file\"\n    dst = \"some_file_imported\"\n\n    erepo.scm_gen({src: \"hello\"}, commit=\"add a regular file\")\n\n    Repo.get(os.fspath(erepo), src, dst)\n\n    assert (tmp_dir / dst).read_text() == \"hello\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/gs.py_GCP_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/gs.py_GCP_", "embedding": null, "metadata": {"file_path": "tests/remotes/gs.py", "file_name": "gs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 25, "end_line": 110, "span_ids": ["GCP.exists", "GCP.is_dir", "gs", "GCP.mkdir", "GCP.write_text", "GCP.get_url", "GCP._get_storagepath", "GCP.config", "GCP.should_test", "GCP._bucket", "GCP.read_bytes", "GCP.read_text", "GCP.is_file", "GCP.write_bytes", "GCP", "GCP._gc", "GCP._blob"], "tokens": 488}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GCP(Base, CloudURLInfo):\n    @staticmethod\n    def should_test():\n        do_test = env2bool(\"DVC_TEST_GCP\", undefined=None)\n        if do_test is not None:\n            return do_test\n\n        if not os.path.exists(TEST_GCP_CREDS_FILE):\n            return False\n\n        return True\n\n    @cached_property\n    def config(self):\n        return {\n            \"url\": self.url,\n            \"credentialpath\": TEST_GCP_CREDS_FILE,\n        }\n\n    @staticmethod\n    def _get_storagepath():\n        return TEST_GCP_REPO_BUCKET + \"/\" + str(uuid.uuid4())\n\n    @staticmethod\n    def get_url():\n        return \"gs://\" + GCP._get_storagepath()\n\n    @property\n    def _gc(self):\n        from google.cloud.storage import Client\n\n        return Client.from_service_account_json(TEST_GCP_CREDS_FILE)\n\n    @property\n    def _bucket(self):\n        return self._gc.bucket(self.bucket)\n\n    @property\n    def _blob(self):\n        return self._bucket.blob(self.path)\n\n    def is_file(self):\n        if self.path.endswith(\"/\"):\n            return False\n\n        return self._blob.exists()\n\n    def is_dir(self):\n        dir_path = self / \"\"\n        return bool(list(self._bucket.list_blobs(prefix=dir_path.path)))\n\n    def exists(self):\n        return self.is_file() or self.is_dir()\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert mode == 0o777\n        assert parents\n        assert not exist_ok\n\n    def write_bytes(self, contents):\n        assert isinstance(contents, bytes)\n        self._blob.upload_from_string(contents)\n\n    def write_text(self, contents, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        self.write_bytes(contents.encode(encoding))\n\n    def read_bytes(self):\n        return self._blob.download_as_string()\n\n    def read_text(self, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        return self.read_bytes().decode(encoding)\n\n\n@pytest.fixture\ndef gs(test_config):\n    test_config.requires(\"gs\")\n    if not GCP.should_test():\n        pytest.skip(\"no gs\")\n    yield GCP(GCP.get_url())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp.py_from_dvc_cli_import_parse_test_import.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp.py_from_dvc_cli_import_parse_test_import.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_imp.py", "file_name": "test_imp.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 39, "span_ids": ["imports", "test_import"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.imp import CmdImport\n\n\ndef test_import(mocker):\n    cli_args = parse_args(\n        [\n            \"import\",\n            \"repo_url\",\n            \"src\",\n            \"--out\",\n            \"out\",\n            \"--file\",\n            \"file\",\n            \"--rev\",\n            \"version\",\n            \"--desc\",\n            \"description\",\n            \"--jobs\",\n            \"3\",\n        ]\n    )\n    assert cli_args.func == CmdImport\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"imp\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        \"repo_url\",\n        path=\"src\",\n        out=\"out\",\n        fname=\"file\",\n        rev=\"version\",\n        no_exec=False,\n        desc=\"description\",\n        jobs=3,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp.py_test_import_no_exec_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp.py_test_import_no_exec_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_imp.py", "file_name": "test_imp.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 75, "span_ids": ["test_import_no_exec"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_no_exec(mocker):\n    cli_args = parse_args(\n        [\n            \"import\",\n            \"repo_url\",\n            \"src\",\n            \"--out\",\n            \"out\",\n            \"--file\",\n            \"file\",\n            \"--rev\",\n            \"version\",\n            \"--no-exec\",\n            \"--desc\",\n            \"description\",\n        ]\n    )\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"imp\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        \"repo_url\",\n        path=\"src\",\n        out=\"out\",\n        fname=\"file\",\n        rev=\"version\",\n        no_exec=True,\n        desc=\"description\",\n        jobs=None,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_is_tracked_unicode_test_is_tracked_unicode.assert_not_scm_is_tracked": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_is_tracked_unicode_test_is_tracked_unicode.assert_not_scm_is_tracked", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 93, "end_line": 97, "span_ids": ["test_is_tracked_unicode"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_is_tracked_unicode(tmp_dir, scm):\n    tmp_dir.scm_gen(\"\u1e6d\u1e5d\u1e01\u1e09\u1e35\u1e17\u1e0b\", \"tracked\", commit=\"add unicode\")\n    tmp_dir.gen(\"\u1e73\u1e4b\u1e6d\u1e5d\u1e01\u1e09\u1e35\u1e17\u1e0b\", \"untracked\")\n    assert scm.is_tracked(\"\u1e6d\u1e5d\u1e01\u1e09\u1e35\u1e17\u1e0b\")\n    assert not scm.is_tracked(\"\u1e73\u1e4b\u1e6d\u1e5d\u1e01\u1e09\u1e35\u1e17\u1e0b\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_external_repo.py_test_subrepo_is_constructed_properly_test_subrepo_is_constructed_properly.with_external_repo_.if_root_is_dvc_.assert_repo_config_remot": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_external_repo.py_test_subrepo_is_constructed_properly_test_subrepo_is_constructed_properly.with_external_repo_.if_root_is_dvc_.assert_repo_config_remot", "embedding": null, "metadata": {"file_path": "tests/unit/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 38, "end_line": 79, "span_ids": ["test_subrepo_is_constructed_properly"], "tokens": 365}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"root_is_dvc\", [False, True])\ndef test_subrepo_is_constructed_properly(\n    tmp_dir, scm, mocker, make_tmp_dir, root_is_dvc\n):\n    if root_is_dvc:\n        make_subrepo(tmp_dir, scm)\n\n    subrepo = tmp_dir / \"subrepo\"\n    make_subrepo(subrepo, scm)\n    local_cache = subrepo.dvc.cache.local.cache_dir\n\n    tmp_dir.scm_gen(\"bar\", \"bar\", commit=\"add bar\")\n    subrepo.dvc_gen(\"foo\", \"foo\", commit=\"add foo\")\n\n    cache_dir = make_tmp_dir(\"temp-cache\")\n    with external_repo(\n        str(tmp_dir), cache_dir=str(cache_dir), cache_types=[\"symlink\"]\n    ) as repo:\n        spy = mocker.spy(repo, \"make_repo\")\n\n        list(repo.repo_tree.walk(repo.root_dir))  # drain\n        assert spy.call_count == 1\n        subrepo = spy.return_value\n\n        assert repo.url == str(tmp_dir)\n        assert repo._cache_config[\"cache\"][\"dir\"] == str(cache_dir)\n        assert repo.cache.local.cache_dir == str(cache_dir)\n        assert subrepo.cache.local.cache_dir == str(cache_dir)\n\n        assert repo._cache_config[\"cache\"][\"type\"] == [\"symlink\"]\n        assert repo.cache.local.cache_types == [\"symlink\"]\n        assert subrepo.cache.local.cache_types == [\"symlink\"]\n\n        assert (\n            subrepo.config[\"remote\"][\"auto-generated-upstream\"][\"url\"]\n            == local_cache\n        )\n        if root_is_dvc:\n            main_cache = tmp_dir.dvc.cache.local.cache_dir\n            assert repo.config[\"remote\"][\"auto-generated-upstream\"][\n                \"url\"\n            ] == str(main_cache)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_external_repo.py_test_fetch_external_repo_jobs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_external_repo.py_test_fetch_external_repo_jobs_", "embedding": null, "metadata": {"file_path": "tests/unit/test_external_repo.py", "file_name": "test_external_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 82, "end_line": 102, "span_ids": ["test_fetch_external_repo_jobs"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fetch_external_repo_jobs(tmp_dir, scm, mocker, dvc, local_remote):\n    tmp_dir.dvc_gen(\n        {\n            \"dir1\": {\n                \"file1\": \"file1\",\n                \"file2\": \"file2\",\n                \"file3\": \"file3\",\n                \"file4\": \"file4\",\n            },\n        },\n        commit=\"init\",\n    )\n\n    dvc.push()\n\n    with external_repo(str(tmp_dir)) as repo:\n        spy = mocker.spy(repo.cloud, \"pull\")\n        repo.fetch_external([\"dir1\"], jobs=3)\n        run_jobs = tuple(spy.call_args_list[0])[1].get(\"jobs\")\n        assert run_jobs == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_from_math_import_inf_pi_test_resolve_primitive_values.assert_context_resolve_te": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_from_math_import_inf_pi_test_resolve_primitive_values.assert_context_resolve_te", "embedding": null, "metadata": {"file_path": "tests/unit/test_interpolate.py", "file_name": "test_interpolate.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 22, "span_ids": ["imports", "test_resolve_primitive_values"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from math import inf, pi\n\nimport pytest\n\nfrom dvc.parsing.context import Context, recurse_not_a_node\n\n\n@pytest.mark.parametrize(\n    \"template, var\",\n    [\n        (\"${value}\", \"value\"),\n        (\"${{item}}\", \"item\"),\n        (\"${ item }\", \"item\"),\n        (\"${{ value }}\", \"value\"),\n    ],\n)\n@pytest.mark.parametrize(\n    \"data\", [True, 12, pi, None, False, 0, \"0\", \"123\", \"Foobar\", \"\", inf, 3e4]\n)\ndef test_resolve_primitive_values(data, template, var):\n    context = Context({var: data})\n    assert context.resolve(template) == data", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_escape_test_escape.assert_context_resolve_te": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_escape_test_escape.assert_context_resolve_te", "embedding": null, "metadata": {"file_path": "tests/unit/test_interpolate.py", "file_name": "test_interpolate.py", "file_type": "text/x-python", "category": "test", "start_line": 25, "end_line": 44, "span_ids": ["test_escape"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"template, expected\",\n    [\n        (r\"\\${value}\", \"${value}\"),\n        (r\"\\${{value}}\", \"${{value}}\"),\n        (r\"\\${ value }\", \"${ value }\"),\n        (r\"\\${{ value }}\", \"${{ value }}\"),\n        (r\"\\${{ value }} days\", \"${{ value }} days\"),\n        (r\"\\${ value } days\", \"${ value } days\"),\n        (r\"Month of \\${value}\", \"Month of ${value}\"),\n        (r\"May the \\${value} be with you\", \"May the ${value} be with you\"),\n        (\n            r\"Great shot kid, that was \\${value} in a ${value}\",\n            \"Great shot kid, that was ${value} in a value\",\n        ),\n    ],\n)\ndef test_escape(template, expected, mocker):\n    context = Context({\"value\": \"value\"})\n    assert context.resolve(template) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_resolve_str_test_resolve_primitives_dict_access.assert_context_resolve_N": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_resolve_str_test_resolve_primitives_dict_access.assert_context_resolve_N", "embedding": null, "metadata": {"file_path": "tests/unit/test_interpolate.py", "file_name": "test_interpolate.py", "file_type": "text/x-python", "category": "test", "start_line": 47, "end_line": 69, "span_ids": ["test_resolve_str", "test_resolve_primitives_dict_access"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_resolve_str():\n    template = \"My name is ${last}, ${first} ${last}\"\n    expected = \"My name is Bond, James Bond\"\n    context = Context({\"first\": \"James\", \"last\": \"Bond\"})\n    assert context.resolve(template) == expected\n\n\ndef test_resolve_primitives_dict_access():\n    data = {\n        \"dict\": {\n            \"num\": 5,\n            \"string\": \"foo\",\n            \"nested\": {\"float\": pi, \"string\": \"bar\"},\n        }\n    }\n    context = Context(data)\n\n    assert context.resolve(\"${dict.num}\") == 5\n    assert context.resolve(\"${dict.string}\") == \"foo\"\n    assert context.resolve(\"${dict.nested.float}\") == pi\n    assert context.resolve(\"${dict.nested.string}\") == \"bar\"\n\n    assert context.resolve(\"Number ${dict.num}\") == \"Number 5\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py__Manages_cache_of_a_DVC__get_cache.return.get_cloud_cache_tree_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py__Manages_cache_of_a_DVC__get_cache.return.get_cloud_cache_tree_", "embedding": null, "metadata": {"file_path": "dvc/cache/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 28, "span_ids": ["_get_cache", "get_cloud_cache", "docstring"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages cache of a DVC repo.\"\"\"\nfrom collections import defaultdict\n\nfrom ..scheme import Schemes\n\n\ndef get_cloud_cache(tree):\n    from .base import CloudCache\n    from .local import LocalCache\n    from .ssh import SSHCache\n\n    if tree.scheme == Schemes.LOCAL:\n        return LocalCache(tree)\n\n    if tree.scheme == Schemes.SSH:\n        return SSHCache(tree)\n\n    return CloudCache(tree)\n\n\ndef _get_cache(repo, settings):\n    from ..tree import get_cloud_tree\n\n    if not settings:\n        return None\n\n    tree = get_cloud_tree(repo, **settings)\n    return get_cloud_cache(tree)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py_Cache_Cache.by_scheme.yield_from_self__cache_it": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/__init__.py_Cache_Cache.by_scheme.yield_from_self__cache_it", "embedding": null, "metadata": {"file_path": "dvc/cache/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 31, "end_line": 80, "span_ids": ["Cache.__init__", "Cache.__getattr__", "Cache", "Cache.by_scheme"], "tokens": 308}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Cache:\n    \"\"\"Class that manages cache locations of a DVC repo.\n\n    Args:\n        repo (dvc.repo.Repo): repo instance that this cache belongs to.\n    \"\"\"\n\n    CACHE_DIR = \"cache\"\n    CLOUD_SCHEMES = [\n        Schemes.S3,\n        Schemes.GS,\n        Schemes.SSH,\n        Schemes.HDFS,\n        Schemes.WEBHDFS,\n    ]\n\n    def __init__(self, repo):\n        self.repo = repo\n        self.config = config = repo.config[\"cache\"]\n        self._cache = {}\n\n        local = config.get(\"local\")\n\n        if local:\n            settings = {\"name\": local}\n        elif \"dir\" not in config:\n            settings = None\n        else:\n            from ..config import LOCAL_COMMON\n\n            settings = {\"url\": config[\"dir\"]}\n            for opt in LOCAL_COMMON.keys():\n                if opt in config:\n                    settings[str(opt)] = config.get(opt)\n\n        self._cache[Schemes.LOCAL] = _get_cache(repo, settings)\n\n        for scheme in self.CLOUD_SCHEMES:\n            remote = self.config.get(scheme)\n            settings = {\"name\": remote} if remote else None\n            self._cache[scheme] = _get_cache(repo, settings)\n\n    def __getattr__(self, name):\n        try:\n            return self._cache[name]\n        except KeyError as exc:\n            raise AttributeError from exc\n\n    def by_scheme(self):\n        yield from self._cache.items()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_itertools_use_state.with_tree_state_.return.call_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_itertools_use_state.with_tree_state_.return.call_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 40, "span_ids": ["imports", "DirCacheError.__init__", "DirCacheError", "use_state"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import itertools\nimport json\nimport logging\nfrom concurrent.futures import ThreadPoolExecutor\nfrom copy import copy\nfrom typing import Optional\n\nfrom funcy import decorator\nfrom shortuuid import uuid\n\nimport dvc.prompt as prompt\nfrom dvc.dir_info import DirInfo\nfrom dvc.exceptions import (\n    CacheLinkError,\n    CheckoutError,\n    ConfirmRemoveError,\n    DvcException,\n)\nfrom dvc.progress import Tqdm\nfrom dvc.remote.slow_link_detection import (  # type: ignore[attr-defined]\n    slow_link_guard,\n)\n\nfrom ..tree.base import RemoteActionNotImplemented\n\nlogger = logging.getLogger(__name__)\n\n\nclass DirCacheError(DvcException):\n    def __init__(self, hash_):\n        super().__init__(\n            f\"Failed to load dir cache for hash value: '{hash_}'.\"\n        )\n\n\n@decorator\ndef use_state(call):\n    tree = call._args[0].tree  # pylint: disable=protected-access\n    with tree.state:\n        return call()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.load_dir_cache_CloudCache.load_dir_cache.return.DirInfo_from_list_d_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.load_dir_cache_CloudCache.load_dir_cache.return.DirInfo_from_list_d_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 74, "end_line": 90, "span_ids": ["CloudCache.load_dir_cache"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def load_dir_cache(self, hash_info):\n        path_info = self.tree.hash_to_path_info(hash_info.value)\n\n        try:\n            with self.tree.open(path_info, \"r\") as fobj:\n                d = json.load(fobj)\n        except (ValueError, FileNotFoundError) as exc:\n            raise DirCacheError(hash_info) from exc\n\n        if not isinstance(d, list):\n            logger.error(\n                \"dir cache file format error '%s' [skipping the file]\",\n                path_info,\n            )\n            d = []\n\n        return DirInfo.from_list(d)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._changed_dir_cache_CloudCache.safe_remove.self_tree_remove_path_inf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._changed_dir_cache_CloudCache.safe_remove.self_tree_remove_path_inf", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 377, "end_line": 420, "span_ids": ["CloudCache.changed_cache", "CloudCache._changed_dir_cache", "CloudCache.safe_remove", "CloudCache.already_cached"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _changed_dir_cache(self, hash_info, path_info=None, filter_info=None):\n        if self.changed_cache_file(hash_info):\n            return True\n\n        dir_info = self.get_dir_cache(hash_info)\n        for entry_info, entry_hash in dir_info.items(path_info):\n            if path_info and filter_info:\n                if not entry_info.isin_or_eq(filter_info):\n                    continue\n\n            if self.changed_cache_file(entry_hash):\n                return True\n\n        return False\n\n    def changed_cache(self, hash_info, path_info=None, filter_info=None):\n        if hash_info.isdir:\n            return self._changed_dir_cache(\n                hash_info, path_info=path_info, filter_info=filter_info\n            )\n        return self.changed_cache_file(hash_info)\n\n    def already_cached(self, path_info):\n        current = self.tree.get_hash(path_info)\n\n        if not current:\n            return False\n\n        return not self.changed_cache(current)\n\n    def safe_remove(self, path_info, force=False):\n        if not self.tree.exists(path_info):\n            return\n\n        if not force and not self.already_cached(path_info):\n            msg = (\n                \"file '{}' is going to be removed.\"\n                \" Are you sure you want to proceed?\".format(str(path_info))\n            )\n\n            if not prompt.confirm(msg):\n                raise ConfirmRemoveError(str(path_info))\n\n        self.tree.remove(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._checkout_CloudCache.set_dir_info.hash_info.nfiles.hash_info_dir_info_nfiles": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._checkout_CloudCache.set_dir_info.hash_info.nfiles.hash_info_dir_info_nfiles", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 564, "end_line": 640, "span_ids": ["CloudCache.get_hash", "CloudCache.set_dir_info", "CloudCache._get_dir_size", "CloudCache.merge", "CloudCache.get_files_number", "CloudCache._checkout"], "tokens": 482}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _checkout(\n        self,\n        path_info,\n        hash_info,\n        force=False,\n        progress_callback=None,\n        relink=False,\n        filter_info=None,\n    ):\n        if not hash_info.isdir:\n            return self._checkout_file(\n                path_info, hash_info, force, progress_callback, relink\n            )\n\n        return self._checkout_dir(\n            path_info, hash_info, force, progress_callback, relink, filter_info\n        )\n\n    def get_files_number(self, path_info, hash_info, filter_info):\n        from funcy.py3 import ilen\n\n        if not hash_info:\n            return 0\n\n        if not hash_info.isdir:\n            return 1\n\n        if not filter_info:\n            return self.get_dir_cache(hash_info).nfiles\n\n        return ilen(\n            filter_info.isin_or_eq(path_info / relpath)\n            for relpath, _ in self.get_dir_cache(hash_info).items()\n        )\n\n    def _get_dir_size(self, dir_info):\n        try:\n            return sum(\n                self.tree.getsize(self.tree.hash_to_path_info(hi.value))\n                for _, hi in dir_info.items()\n            )\n        except FileNotFoundError:\n            return None\n\n    def merge(self, ancestor_info, our_info, their_info):\n        assert our_info\n        assert their_info\n\n        if ancestor_info:\n            ancestor = self.get_dir_cache(ancestor_info)\n        else:\n            ancestor = DirInfo()\n\n        our = self.get_dir_cache(our_info)\n        their = self.get_dir_cache(their_info)\n\n        merged = our.merge(ancestor, their)\n        hash_info = self.save_dir_info(merged)\n        hash_info.size = self._get_dir_size(merged)\n        return hash_info\n\n    @use_state\n    def get_hash(self, tree, path_info):\n        hash_info = tree.get_hash(path_info)\n        if not hash_info.isdir:\n            assert hash_info.name == self.tree.PARAM_CHECKSUM\n            return hash_info\n\n        hi = self.save_dir_info(hash_info.dir_info, hash_info)\n        hi.size = hash_info.size\n        return hi\n\n    def set_dir_info(self, hash_info):\n        assert hash_info.isdir\n\n        hash_info.dir_info = self.get_dir_cache(hash_info)\n        hash_info.nfiles = hash_info.dir_info.nfiles", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._list_paths_CloudCache._list_paths.if_progress_callback_.else_.yield_from_self_tree_walk": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._list_paths_CloudCache._list_paths.if_progress_callback_.else_.yield_from_self_tree_walk", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 642, "end_line": 657, "span_ids": ["CloudCache._list_paths"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _list_paths(self, prefix=None, progress_callback=None):\n        if prefix:\n            if len(prefix) > 2:\n                path_info = self.tree.path_info / prefix[:2] / prefix[2:]\n            else:\n                path_info = self.tree.path_info / prefix[:2]\n            prefix = True\n        else:\n            path_info = self.tree.path_info\n            prefix = False\n        if progress_callback:\n            for file_info in self.tree.walk_files(path_info, prefix=prefix):\n                progress_callback()\n                yield file_info.path\n        else:\n            yield from self.tree.walk_files(path_info, prefix=prefix)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._path_to_hash_CloudCache._max_estimation_size.return.max_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._path_to_hash_CloudCache._max_estimation_size.return.max_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 659, "end_line": 700, "span_ids": ["CloudCache._path_to_hash", "CloudCache._max_estimation_size", "CloudCache.list_hashes", "CloudCache._hashes_with_limit"], "tokens": 317}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _path_to_hash(self, path):\n        parts = self.tree.PATH_CLS(path).parts[-2:]\n\n        if not (len(parts) == 2 and parts[0] and len(parts[0]) == 2):\n            raise ValueError(f\"Bad cache file path '{path}'\")\n\n        return \"\".join(parts)\n\n    def list_hashes(self, prefix=None, progress_callback=None):\n        \"\"\"Iterate over hashes in this tree.\n\n        If `prefix` is specified, only hashes which begin with `prefix`\n        will be returned.\n        \"\"\"\n        for path in self._list_paths(prefix, progress_callback):\n            try:\n                yield self._path_to_hash(path)\n            except ValueError:\n                logger.debug(\n                    \"'%s' doesn't look like a cache file, skipping\", path\n                )\n\n    def _hashes_with_limit(self, limit, prefix=None, progress_callback=None):\n        count = 0\n        for hash_ in self.list_hashes(prefix, progress_callback):\n            yield hash_\n            count += 1\n            if count > limit:\n                logger.debug(\n                    \"`list_hashes()` returned max '{}' hashes, \"\n                    \"skipping remaining results\".format(limit)\n                )\n                return\n\n    def _max_estimation_size(self, hashes):\n        # Max remote size allowed for us to use traverse method\n        return max(\n            self.tree.TRAVERSE_THRESHOLD_SIZE,\n            len(hashes)\n            / self.tree.TRAVERSE_WEIGHT_MULTIPLIER\n            * self.tree.LIST_OBJECT_PAGE_SIZE,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._estimate_remote_size_CloudCache._estimate_remote_size.return.remote_size_remote_hashe": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._estimate_remote_size_CloudCache._estimate_remote_size.return.remote_size_remote_hashe", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 702, "end_line": 735, "span_ids": ["CloudCache._estimate_remote_size"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _estimate_remote_size(self, hashes=None, name=None):\n        \"\"\"Estimate tree size based on number of entries beginning with\n        \"00...\" prefix.\n        \"\"\"\n        prefix = \"0\" * self.tree.TRAVERSE_PREFIX_LEN\n        total_prefixes = pow(16, self.tree.TRAVERSE_PREFIX_LEN)\n        if hashes:\n            max_hashes = self._max_estimation_size(hashes)\n        else:\n            max_hashes = None\n\n        with Tqdm(\n            desc=\"Estimating size of \"\n            + (f\"cache in '{name}'\" if name else \"remote cache\"),\n            unit=\"file\",\n        ) as pbar:\n\n            def update(n=1):\n                pbar.update(n * total_prefixes)\n\n            if max_hashes:\n                hashes = self._hashes_with_limit(\n                    max_hashes / total_prefixes, prefix, update\n                )\n            else:\n                hashes = self.list_hashes(prefix, update)\n\n            remote_hashes = set(hashes)\n            if remote_hashes:\n                remote_size = total_prefixes * len(remote_hashes)\n            else:\n                remote_size = total_prefixes\n            logger.debug(f\"Estimated remote size: {remote_size} files\")\n        return remote_size, remote_hashes", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.list_hashes_traverse_CloudCache.list_hashes_traverse.with_Tqdm_.with_ThreadPoolExecutor_.yield_from_itertools_chai": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.list_hashes_traverse_CloudCache.list_hashes_traverse.with_Tqdm_.with_ThreadPoolExecutor_.yield_from_itertools_chai", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 737, "end_line": 794, "span_ids": ["CloudCache.list_hashes_traverse"], "tokens": 522}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def list_hashes_traverse(\n        self, remote_size, remote_hashes, jobs=None, name=None\n    ):\n        \"\"\"Iterate over all hashes found in this tree.\n        Hashes are fetched in parallel according to prefix, except in\n        cases where the remote size is very small.\n\n        All hashes from the remote (including any from the size\n        estimation step passed via the `remote_hashes` argument) will be\n        returned.\n\n        NOTE: For large remotes the list of hashes will be very\n        big(e.g. 100M entries, md5 for each is 32 bytes, so ~3200Mb list)\n        and we don't really need all of it at the same time, so it makes\n        sense to use a generator to gradually iterate over it, without\n        keeping all of it in memory.\n        \"\"\"\n        num_pages = remote_size / self.tree.LIST_OBJECT_PAGE_SIZE\n        if num_pages < 256 / self.tree.JOBS:\n            # Fetching prefixes in parallel requires at least 255 more\n            # requests, for small enough remotes it will be faster to fetch\n            # entire cache without splitting it into prefixes.\n            #\n            # NOTE: this ends up re-fetching hashes that were already\n            # fetched during remote size estimation\n            traverse_prefixes = [None]\n            initial = 0\n        else:\n            yield from remote_hashes\n            initial = len(remote_hashes)\n            traverse_prefixes = [f\"{i:02x}\" for i in range(1, 256)]\n            if self.tree.TRAVERSE_PREFIX_LEN > 2:\n                traverse_prefixes += [\n                    \"{0:0{1}x}\".format(i, self.tree.TRAVERSE_PREFIX_LEN)\n                    for i in range(\n                        1, pow(16, self.tree.TRAVERSE_PREFIX_LEN - 2)\n                    )\n                ]\n        with Tqdm(\n            desc=\"Querying \"\n            + (f\"cache in '{name}'\" if name else \"remote cache\"),\n            total=remote_size,\n            initial=initial,\n            unit=\"file\",\n        ) as pbar:\n\n            def list_with_update(prefix):\n                return list(\n                    self.list_hashes(\n                        prefix=prefix, progress_callback=pbar.update\n                    )\n                )\n\n            with ThreadPoolExecutor(\n                max_workers=jobs or self.tree.JOBS\n            ) as executor:\n                in_remote = executor.map(list_with_update, traverse_prefixes,)\n                yield from itertools.chain.from_iterable(in_remote)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.all_CloudCache.all.return.self_list_hashes_traverse": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.all_CloudCache.all.return.self_list_hashes_traverse", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 796, "end_line": 814, "span_ids": ["CloudCache.all"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def all(self, jobs=None, name=None):\n        \"\"\"Iterate over all hashes in this tree.\n\n        Hashes will be fetched in parallel threads according to prefix\n        (except for small remotes) and a progress bar will be displayed.\n        \"\"\"\n        logger.debug(\n            \"Fetching all hashes from '{}'\".format(\n                name if name else \"remote cache\"\n            )\n        )\n\n        if not self.tree.CAN_TRAVERSE:\n            return self.list_hashes()\n\n        remote_size, remote_hashes = self._estimate_remote_size(name=name)\n        return self.list_hashes_traverse(\n            remote_size, remote_hashes, jobs, name\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._remove_unpacked_dir_CloudCache.gc.return.removed": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache._remove_unpacked_dir_CloudCache.gc.return.removed", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 816, "end_line": 837, "span_ids": ["CloudCache._remove_unpacked_dir", "CloudCache.gc"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def _remove_unpacked_dir(self, hash_):\n        pass\n\n    def gc(self, used, jobs=None):\n        removed = False\n        # hashes must be sorted to ensure we always remove .dir files first\n        for hash_ in sorted(\n            self.all(jobs, str(self.tree.path_info)),\n            key=self.tree.is_dir_hash,\n            reverse=True,\n        ):\n            if hash_ in used:\n                continue\n            path_info = self.tree.hash_to_path_info(hash_)\n            if self.tree.is_dir_hash(hash_):\n                # backward compatibility\n                # pylint: disable=protected-access\n                self._remove_unpacked_dir(hash_)\n            self.tree.remove(path_info)\n            removed = True\n\n        return removed", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.list_hashes_exists_CloudCache.list_hashes_exists.with_Tqdm_.with_ThreadPoolExecutor_.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.list_hashes_exists_CloudCache.list_hashes_exists.with_Tqdm_.with_ThreadPoolExecutor_.return.ret", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 839, "end_line": 864, "span_ids": ["CloudCache.list_hashes_exists"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def list_hashes_exists(self, hashes, jobs=None, name=None):\n        \"\"\"Return list of the specified hashes which exist in this tree.\n        Hashes will be queried individually.\n        \"\"\"\n        logger.debug(\n            \"Querying {} hashes via object_exists\".format(len(hashes))\n        )\n        with Tqdm(\n            desc=\"Querying \"\n            + (\"cache in \" + name if name else \"remote cache\"),\n            total=len(hashes),\n            unit=\"file\",\n        ) as pbar:\n\n            def exists_with_progress(path_info):\n                ret = self.tree.exists(path_info)\n                pbar.update_msg(str(path_info))\n                return ret\n\n            with ThreadPoolExecutor(\n                max_workers=jobs or self.tree.JOBS\n            ) as executor:\n                path_infos = map(self.tree.hash_to_path_info, hashes)\n                in_remote = executor.map(exists_with_progress, path_infos)\n                ret = list(itertools.compress(hashes, in_remote))\n                return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.hashes_exist_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/base.py_CloudCache.hashes_exist_", "embedding": null, "metadata": {"file_path": "dvc/cache/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 866, "end_line": 938, "span_ids": ["CloudCache.hashes_exist"], "tokens": 716}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CloudCache:\n\n    def hashes_exist(self, hashes, jobs=None, name=None):\n        \"\"\"Check if the given hashes are stored in the remote.\n\n        There are two ways of performing this check:\n\n        - Traverse method: Get a list of all the files in the remote\n            (traversing the cache directory) and compare it with\n            the given hashes. Cache entries will be retrieved in parallel\n            threads according to prefix (i.e. entries starting with, \"00...\",\n            \"01...\", and so on) and a progress bar will be displayed.\n\n        - Exists method: For each given hash, run the `exists`\n            method and filter the hashes that aren't on the remote.\n            This is done in parallel threads.\n            It also shows a progress bar when performing the check.\n\n        The reason for such an odd logic is that most of the remotes\n        take much shorter time to just retrieve everything they have under\n        a certain prefix (e.g. s3, gs, ssh, hdfs). Other remotes that can\n        check if particular file exists much quicker, use their own\n        implementation of hashes_exist (see ssh, local).\n\n        Which method to use will be automatically determined after estimating\n        the size of the remote cache, and comparing the estimated size with\n        len(hashes). To estimate the size of the remote cache, we fetch\n        a small subset of cache entries (i.e. entries starting with \"00...\").\n        Based on the number of entries in that subset, the size of the full\n        cache can be estimated, since the cache is evenly distributed according\n        to hash.\n\n        Returns:\n            A list with hashes that were found in the remote\n        \"\"\"\n        # Remotes which do not use traverse prefix should override\n        # hashes_exist() (see ssh, local)\n        assert self.tree.TRAVERSE_PREFIX_LEN >= 2\n\n        hashes = set(hashes)\n        if len(hashes) == 1 or not self.tree.CAN_TRAVERSE:\n            remote_hashes = self.list_hashes_exists(hashes, jobs, name)\n            return remote_hashes\n\n        # Max remote size allowed for us to use traverse method\n        remote_size, remote_hashes = self._estimate_remote_size(hashes, name)\n\n        traverse_pages = remote_size / self.tree.LIST_OBJECT_PAGE_SIZE\n        # For sufficiently large remotes, traverse must be weighted to account\n        # for performance overhead from large lists/sets.\n        # From testing with S3, for remotes with 1M+ files, object_exists is\n        # faster until len(hashes) is at least 10k~100k\n        if remote_size > self.tree.TRAVERSE_THRESHOLD_SIZE:\n            traverse_weight = (\n                traverse_pages * self.tree.TRAVERSE_WEIGHT_MULTIPLIER\n            )\n        else:\n            traverse_weight = traverse_pages\n        if len(hashes) < traverse_weight:\n            logger.debug(\n                \"Large remote ('{}' hashes < '{}' traverse weight), \"\n                \"using object_exists for remaining hashes\".format(\n                    len(hashes), traverse_weight\n                )\n            )\n            return list(hashes & remote_hashes) + self.list_hashes_exists(\n                hashes - remote_hashes, jobs, name\n            )\n\n        logger.debug(\"Querying '{}' hashes via traverse\".format(len(hashes)))\n        remote_hashes = set(\n            self.list_hashes_traverse(remote_size, remote_hashes, jobs, name)\n        )\n        return list(hashes & set(remote_hashes))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/local.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/local.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/cache/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 92, "span_ids": ["LocalCache.cache_dir", "LocalCache.already_cached", "LocalCache._remove_unpacked_dir", "LocalCache.__init__", "LocalCache._verify_link", "imports", "LocalCache", "LocalCache.hash_to_path", "LocalCache.cache_path", "LocalCache.hashes_exist", "LocalCache._list_paths", "LocalCache.cache_dir_1"], "tokens": 638}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nfrom funcy import cached_property\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.progress import Tqdm\n\nfrom ..tree.local import LocalTree\nfrom ..utils.fs import walk_files\nfrom .base import CloudCache\n\nlogger = logging.getLogger(__name__)\n\n\nclass LocalCache(CloudCache):\n    DEFAULT_CACHE_TYPES = [\"reflink\", \"copy\"]\n    CACHE_MODE = LocalTree.CACHE_MODE\n    UNPACKED_DIR_SUFFIX = \".unpacked\"\n\n    def __init__(self, tree):\n        super().__init__(tree)\n        self.cache_dir = tree.config.get(\"url\")\n\n    @property\n    def cache_dir(self):\n        return self.tree.path_info.fspath if self.tree.path_info else None\n\n    @cache_dir.setter\n    def cache_dir(self, value):\n        self.tree.path_info = PathInfo(value) if value else None\n\n    @cached_property\n    def cache_path(self):\n        return os.path.abspath(self.cache_dir)\n\n    def hash_to_path(self, hash_):\n        # NOTE: `self.cache_path` is already normalized so we can simply use\n        # `os.sep` instead of `os.path.join`. This results in this helper\n        # being ~5.5 times faster.\n        return f\"{self.cache_path}{os.sep}{hash_[0:2]}{os.sep}{hash_[2:]}\"\n\n    def hashes_exist(\n        self, hashes, jobs=None, name=None\n    ):  # pylint: disable=unused-argument\n        return [\n            hash_\n            for hash_ in Tqdm(\n                hashes,\n                unit=\"file\",\n                desc=\"Querying \"\n                + (\"cache in \" + name if name else \"local cache\"),\n            )\n            if not self.changed_cache_file(\n                HashInfo(self.tree.PARAM_CHECKSUM, hash_)\n            )\n        ]\n\n    def already_cached(self, path_info):\n        assert path_info.scheme in [\"\", \"local\"]\n\n        return super().already_cached(path_info)\n\n    def _verify_link(self, path_info, link_type):\n        if link_type == \"hardlink\" and self.tree.getsize(path_info) == 0:\n            return\n\n        super()._verify_link(path_info, link_type)\n\n    def _list_paths(self, prefix=None, progress_callback=None):\n        assert self.tree.path_info is not None\n        if prefix:\n            path_info = self.tree.path_info / prefix[:2]\n            if not self.tree.exists(path_info):\n                return\n        else:\n            path_info = self.tree.path_info\n        # NOTE: use utils.fs walk_files since tree.walk_files will not follow\n        # symlinks\n        if progress_callback:\n            for path in walk_files(path_info):\n                progress_callback()\n                yield path\n        else:\n            yield from walk_files(path_info)\n\n    def _remove_unpacked_dir(self, hash_):\n        info = self.tree.hash_to_path_info(hash_)\n        path_info = info.with_name(info.name + self.UNPACKED_DIR_SUFFIX)\n        self.tree.remove(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/ssh.py_errno_SSHCache.batch_exists.with_self_tree_ssh_path_i.return.results": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/ssh.py_errno_SSHCache.batch_exists.with_self_tree_ssh_path_i.return.results", "embedding": null, "metadata": {"file_path": "dvc/cache/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 42, "span_ids": ["imports", "SSHCache.batch_exists", "SSHCache"], "tokens": 252}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport itertools\nimport logging\nimport posixpath\nfrom concurrent.futures import ThreadPoolExecutor\n\nfrom dvc.progress import Tqdm\nfrom dvc.utils import to_chunks\n\nfrom .base import CloudCache\n\nlogger = logging.getLogger(__name__)\n\n\nclass SSHCache(CloudCache):\n    def batch_exists(self, path_infos, callback):\n        def _exists(chunk_and_channel):\n            chunk, channel = chunk_and_channel\n            ret = []\n            for path in chunk:\n                try:\n                    channel.stat(path)\n                    ret.append(True)\n                except OSError as exc:\n                    if exc.errno != errno.ENOENT:\n                        raise\n                    ret.append(False)\n                callback(path)\n            return ret\n\n        with self.tree.ssh(path_infos[0]) as ssh:\n            channels = ssh.open_max_sftp_channels()\n            max_workers = len(channels)\n\n            with ThreadPoolExecutor(max_workers=max_workers) as executor:\n                paths = [path_info.path for path_info in path_infos]\n                chunks = to_chunks(paths, num_chunks=max_workers)\n                chunks_and_channels = zip(chunks, channels)\n                outcome = executor.map(_exists, chunks_and_channels)\n                results = list(itertools.chain.from_iterable(outcome))\n\n            return results", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/ssh.py_SSHCache.hashes_exist_SSHCache.hashes_exist.with_Tqdm_.with_ThreadPoolExecutor_.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/ssh.py_SSHCache.hashes_exist_SSHCache.hashes_exist.with_Tqdm_.with_ThreadPoolExecutor_.return.ret", "embedding": null, "metadata": {"file_path": "dvc/cache/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 44, "end_line": 74, "span_ids": ["SSHCache.hashes_exist"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHCache(CloudCache):\n\n    def hashes_exist(self, hashes, jobs=None, name=None):\n        \"\"\"This is older implementation used in remote/base.py\n        We are reusing it in RemoteSSH, because SSH's batch_exists proved to be\n        faster than current approach (relying on exists(path_info)) applied in\n        remote/base.\n        \"\"\"\n        if not self.tree.CAN_TRAVERSE:\n            return list(set(hashes) & set(self.all()))\n\n        # possibly prompt for credentials before \"Querying\" progress output\n        self.tree.ensure_credentials()\n\n        with Tqdm(\n            desc=\"Querying \"\n            + (\"cache in \" + name if name else \"remote cache\"),\n            total=len(hashes),\n            unit=\"file\",\n        ) as pbar:\n\n            def exists_with_progress(chunks):\n                return self.batch_exists(chunks, callback=pbar.update_msg)\n\n            with ThreadPoolExecutor(\n                max_workers=jobs or self.tree.JOBS\n            ) as executor:\n                path_infos = [self.tree.hash_to_path_info(x) for x in hashes]\n                chunks = to_chunks(path_infos, num_chunks=self.tree.JOBS)\n                results = executor.map(exists_with_progress, chunks)\n                in_remote = itertools.chain.from_iterable(results)\n                ret = list(itertools.compress(hashes, in_remote))\n                return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/ssh.py_SSHCache._list_paths_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/cache/ssh.py_SSHCache._list_paths_", "embedding": null, "metadata": {"file_path": "dvc/cache/ssh.py", "file_name": "ssh.py", "file_type": "text/x-python", "category": "implementation", "start_line": 76, "end_line": 91, "span_ids": ["SSHCache._list_paths"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class SSHCache(CloudCache):\n\n    def _list_paths(self, prefix=None, progress_callback=None):\n        if prefix:\n            root = posixpath.join(self.tree.path_info.path, prefix[:2])\n        else:\n            root = self.tree.path_info.path\n        with self.tree.ssh(self.tree.path_info) as ssh:\n            if prefix and not ssh.exists(root):\n                return\n            # If we simply return an iterator then with above closes instantly\n            if progress_callback:\n                for path in ssh.walk_files(root):\n                    progress_callback()\n                    yield path\n            else:\n                yield from ssh.walk_files(root)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py_argparse__transform.return.nx_relabel_nodes_G__rela": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py_argparse__transform.return.nx_relabel_nodes_G__rela", "embedding": null, "metadata": {"file_path": "dvc/command/dag.py", "file_name": "dag.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 60, "span_ids": ["_show_dot", "_collect_targets", "_show_ascii", "imports", "_transform"], "tokens": 325}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.stage import Stage\n\nlogger = logging.getLogger(__name__)\n\n\ndef _show_ascii(G):\n    from dvc.dagascii import draw\n    from dvc.repo.graph import get_pipelines\n\n    pipelines = get_pipelines(G)\n\n    ret = []\n    for pipeline in pipelines:\n        ret.append(draw(pipeline.nodes, pipeline.edges))\n\n    return \"\\n\".join(ret)\n\n\ndef _show_dot(G):\n    import io\n\n    from networkx.drawing.nx_pydot import write_dot\n\n    dot_file = io.StringIO()\n    write_dot(G, dot_file)\n    return dot_file.getvalue()\n\n\ndef _collect_targets(repo, target, outs):\n    if not target:\n        return []\n\n    pairs = repo.stage.collect_granular(target)\n    if not outs:\n        return [stage.addressing for stage, _ in pairs]\n\n    targets = []\n    for stage, info in pairs:\n        if not info:\n            targets.extend([str(out) for out in stage.outs])\n            continue\n\n        for out in repo.outs_trie.itervalues(prefix=info.parts):  # noqa: B301\n            targets.extend(str(out))\n\n    return targets\n\n\ndef _transform(repo, outs):\n    import networkx as nx\n\n    def _relabel(node) -> str:\n        return node.addressing if isinstance(node, Stage) else str(node)\n\n    G = repo.outs_graph if outs else repo.graph\n    return nx.relabel_nodes(G, _relabel, copy=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py__filter__filter.return.H": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py__filter__filter.return.H", "embedding": null, "metadata": {"file_path": "dvc/command/dag.py", "file_name": "dag.py", "file_type": "text/x-python", "category": "implementation", "start_line": 63, "end_line": 84, "span_ids": ["_filter"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _filter(G, targets, full):\n    import networkx as nx\n\n    if not targets:\n        return G\n\n    H = G.copy()\n    if not full:\n        descendants = set()\n        for target in targets:\n            descendants.update(nx.descendants(G, target))\n            descendants.add(target)\n        H.remove_nodes_from(set(G.nodes()) - descendants)\n\n    undirected = H.to_undirected()\n    connected = set()\n    for target in targets:\n        connected.update(nx.node_connected_component(undirected, target))\n\n    H.remove_nodes_from(set(H.nodes()) - connected)\n\n    return H", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py__build_CmdDAG.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/dag.py__build_CmdDAG.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/dag.py", "file_name": "dag.py", "file_type": "text/x-python", "category": "implementation", "start_line": 87, "end_line": 109, "span_ids": ["CmdDAG", "CmdDAG.run", "_build"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _build(repo, target=None, full=False, outs=False):\n    targets = _collect_targets(repo, target, outs)\n    G = _transform(repo, outs)\n    return _filter(G, targets, full)\n\n\nclass CmdDAG(CmdBase):\n    def run(self):\n        G = _build(\n            self.repo,\n            target=self.args.target,\n            full=self.args.full,\n            outs=self.args.outs,\n        )\n\n        if self.args.dot:\n            logger.info(_show_dot(G))\n        else:\n            from dvc.utils.pager import pager\n\n            pager(_show_ascii(G))\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsGC_CmdExperimentsGC.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsGC_CmdExperimentsGC.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 468, "end_line": 515, "span_ids": ["CmdExperimentsGC.run", "CmdExperimentsGC"], "tokens": 335}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsGC(CmdRepro):\n    def run(self):\n        _raise_error_if_all_disabled(\n            all_branches=self.args.all_branches,\n            all_tags=self.args.all_tags,\n            all_commits=self.args.all_commits,\n            workspace=self.args.workspace,\n        )\n\n        msg = \"This will remove all experiments except those derived from \"\n\n        msg += \"the workspace\"\n        if self.args.all_commits:\n            msg += \" and all git commits\"\n        elif self.args.all_branches and self.args.all_tags:\n            msg += \" and all git branches and tags\"\n        elif self.args.all_branches:\n            msg += \" and all git branches\"\n        elif self.args.all_tags:\n            msg += \" and all git tags\"\n        msg += \" of the current repo.\"\n        if self.args.queued:\n            msg += \" Run queued experiments will be preserved.\"\n        if self.args.queued:\n            msg += \" Run queued experiments will be removed.\"\n\n        logger.warning(msg)\n\n        msg = \"Are you sure you want to proceed?\"\n        if not self.args.force and not prompt.confirm(msg):\n            return 1\n\n        removed = self.repo.experiments.gc(\n            all_branches=self.args.all_branches,\n            all_tags=self.args.all_tags,\n            all_commits=self.args.all_commits,\n            workspace=self.args.workspace,\n            queued=self.args.queued,\n        )\n\n        if removed:\n            logger.info(\n                f\"Removed {removed} experiments. To remove unused cache files \"\n                \"use 'dvc gc'.\"\n            )\n        else:\n            logger.info(\"No experiments to remove.\")\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__add_run_common_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py__add_run_common_", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1065, "end_line": 1115, "span_ids": ["_add_run_common"], "tokens": 300}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _add_run_common(parser):\n    \"\"\"Add common args for 'exp run' and 'exp resume'.\"\"\"\n    # inherit arguments from `dvc repro`\n    add_repro_arguments(parser)\n    parser.add_argument(\n        \"-n\",\n        \"--name\",\n        default=None,\n        help=(\n            \"Human-readable experiment name. If not specified, a name will \"\n            \"be auto-generated.\"\n        ),\n        metavar=\"<name>\",\n    )\n    parser.add_argument(\n        \"--params\",\n        action=\"append\",\n        default=[],\n        help=\"Use the specified param values when reproducing pipelines.\",\n        metavar=\"[<filename>:]<params_list>\",\n    )\n    parser.add_argument(\n        \"--queue\",\n        action=\"store_true\",\n        default=False,\n        help=\"Stage this experiment in the run queue for future execution.\",\n    )\n    parser.add_argument(\n        \"--run-all\",\n        action=\"store_true\",\n        default=False,\n        help=\"Execute all experiments in the run queue.\",\n    )\n    parser.add_argument(\n        \"-j\",\n        \"--jobs\",\n        type=int,\n        help=\"Run the specified number of experiments at a time in parallel.\",\n        metavar=\"<number>\",\n    )\n    parser.add_argument(\n        \"--temp\",\n        action=\"store_true\",\n        dest=\"tmp_dir\",\n        help=(\n            \"Run this experiment in a separate temporary directory instead of \"\n            \"your workspace. Only applies when running a single experiment \"\n            \"without --queue.\"\n        ),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._load_paths_Config._load_paths.return.Config__map_dirs_conf_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._load_paths_Config._load_paths.return.Config__map_dirs_conf_re", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 382, "end_line": 397, "span_ids": ["Config._load_paths"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Config(dict):\n\n    @staticmethod\n    def _load_paths(conf, filename):\n        abs_conf_dir = os.path.abspath(os.path.dirname(filename))\n\n        def resolve(path):\n            if os.path.isabs(path) or re.match(r\"\\w+://\", path):\n                return path\n\n            # on windows convert slashes to backslashes\n            # to have path compatible with abs_conf_dir\n            if os.path.sep == \"\\\\\" and \"/\" in path:\n                path = path.replace(\"/\", \"\\\\\")\n\n            return RelPath(os.path.join(abs_conf_dir, path))\n\n        return Config._map_dirs(conf, resolve)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._to_relpath_Config._save_paths.return.Config__map_dirs_conf_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._to_relpath_Config._save_paths.return.Config__map_dirs_conf_re", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 399, "end_line": 414, "span_ids": ["Config._to_relpath", "Config._save_paths"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Config(dict):\n\n    @staticmethod\n    def _to_relpath(conf_dir, path):\n        if re.match(r\"\\w+://\", path):\n            return path\n\n        if isinstance(path, RelPath) or not os.path.isabs(path):\n            path = relpath(path, conf_dir)\n\n        return PathInfo(path).as_posix()\n\n    @staticmethod\n    def _save_paths(conf, filename):\n        conf_dir = os.path.dirname(filename)\n        rel = partial(Config._to_relpath, conf_dir)\n\n        return Config._map_dirs(conf, rel)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py_DataCloud._init_remote_DataCloud.push.return.remote_push_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py_DataCloud._init_remote_DataCloud.push.return.remote_push_", "embedding": null, "metadata": {"file_path": "dvc/data_cloud.py", "file_name": "data_cloud.py", "file_type": "text/x-python", "category": "implementation", "start_line": 47, "end_line": 70, "span_ids": ["DataCloud.push", "DataCloud._init_remote"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DataCloud:\n\n    def _init_remote(self, name):\n        return get_remote(self.repo, name=name)\n\n    def push(\n        self, cache, jobs=None, remote=None, show_checksums=False,\n    ):\n        \"\"\"Push data items in a cloud-agnostic way.\n\n        Args:\n            cache (NamedCache): named checksums to push to the cloud.\n            jobs (int): number of jobs that can be running simultaneously.\n            remote (dvc.remote.base.BaseRemote): optional remote to push to.\n                By default remote from core.remote config option is used.\n            show_checksums (bool): show checksums instead of file names in\n                information messages.\n        \"\"\"\n        remote = self.get_remote(remote, \"push\")\n\n        return remote.push(\n            self.repo.cache.local,\n            cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py_DataCloud.pull_DataCloud.pull.return.remote_pull_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/data_cloud.py_DataCloud.pull_DataCloud.pull.return.remote_pull_", "embedding": null, "metadata": {"file_path": "dvc/data_cloud.py", "file_name": "data_cloud.py", "file_type": "text/x-python", "category": "implementation", "start_line": 72, "end_line": 92, "span_ids": ["DataCloud.pull"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DataCloud:\n\n    def pull(\n        self, cache, jobs=None, remote=None, show_checksums=False,\n    ):\n        \"\"\"Pull data items in a cloud-agnostic way.\n\n        Args:\n            cache (NamedCache): named checksums to pull from the cloud.\n            jobs (int): number of jobs that can be running simultaneously.\n            remote (dvc.remote.base.BaseRemote): optional remote to pull from.\n                By default remote from core.remote config option is used.\n            show_checksums (bool): show checksums instead of file names in\n                information messages.\n        \"\"\"\n        remote = self.get_remote(remote, \"pull\")\n\n        return remote.pull(\n            self.repo.cache.local,\n            cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/base.py_from_typing_import_Type_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/base.py_from_typing_import_Type_", "embedding": null, "metadata": {"file_path": "dvc/dependency/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 34, "span_ids": ["DependencyDoesNotExistError", "DependencyDoesNotExistError.__init__", "DependencyIsNotFileOrDirError", "imports", "DependencyIsStageFileError.__init__", "BaseDependency.update", "BaseDependency", "DependencyIsStageFileError", "DependencyIsNotFileOrDirError.__init__"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from typing import Type\n\nfrom dvc.exceptions import DvcException\n\n\nclass DependencyDoesNotExistError(DvcException):\n    def __init__(self, path):\n        msg = f\"dependency '{path}' does not exist\"\n        super().__init__(msg)\n\n\nclass DependencyIsNotFileOrDirError(DvcException):\n    def __init__(self, path):\n        msg = f\"dependency '{path}' is not a file or directory\"\n        super().__init__(msg)\n\n\nclass DependencyIsStageFileError(DvcException):\n    def __init__(self, path):\n        super().__init__(f\"Stage file '{path}' cannot be a dependency.\")\n\n\nclass BaseDependency:\n    IS_DEPENDENCY = True\n\n    DoesNotExistError = DependencyDoesNotExistError  # type: Type[DvcException]\n    IsNotFileOrDirError = (\n        DependencyIsNotFileOrDirError\n    )  # type: Type[DvcException]\n    IsStageFileError = DependencyIsStageFileError  # type: Type[DvcException]\n\n    def update(self, rev=None):\n        pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/webhdfs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dependency/webhdfs.py__", "embedding": null, "metadata": {"file_path": "dvc/dependency/webhdfs.py", "file_name": "webhdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 7, "span_ids": ["WebHDFSDependency", "imports"], "tokens": 39}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.dependency.base import BaseDependency\nfrom dvc.output.webhdfs import WebHDFSOutput\n\n\nclass WebHDFSDependency(BaseDependency, WebHDFSOutput):\n    pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dir_info.py_posixpath__merge.return.patch_our_diff_their_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dir_info.py_posixpath__merge.return.patch_our_diff_their_di", "embedding": null, "metadata": {"file_path": "dvc/dir_info.py", "file_name": "dir_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 44, "span_ids": ["_merge", "imports", "_diff"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import posixpath\nfrom operator import itemgetter\n\nfrom pygtrie import Trie\n\nfrom .hash_info import HashInfo\n\n\ndef _diff(ancestor, other, allow_removed=False):\n    from dictdiffer import diff\n\n    from dvc.exceptions import MergeError\n\n    allowed = [\"add\"]\n    if allow_removed:\n        allowed.append(\"remove\")\n\n    result = list(diff(ancestor, other))\n    for typ, _, _ in result:\n        if typ not in allowed:\n            raise MergeError(\n                \"unable to auto-merge directories with diff that contains \"\n                f\"'{typ}'ed files\"\n            )\n    return result\n\n\ndef _merge(ancestor, our, their):\n    import copy\n\n    from dictdiffer import patch\n\n    our_diff = _diff(ancestor, our)\n    if not our_diff:\n        return copy.deepcopy(their)\n\n    their_diff = _diff(ancestor, their)\n    if not their_diff:\n        return copy.deepcopy(our)\n\n    # make sure there are no conflicting files\n    _diff(our, their, allow_removed=True)\n\n    return patch(our_diff + their_diff, ancestor)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dir_info.py_DirInfo_DirInfo.from_list.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dir_info.py_DirInfo_DirInfo.from_list.return.ret", "embedding": null, "metadata": {"file_path": "dvc/dir_info.py", "file_name": "dir_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 47, "end_line": 82, "span_ids": ["DirInfo", "DirInfo.size", "DirInfo.nfiles", "DirInfo.from_list", "DirInfo.items", "DirInfo.__init__"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DirInfo:\n    PARAM_RELPATH = \"relpath\"\n\n    def __init__(self):\n        self.trie = Trie()\n\n    @property\n    def size(self):\n        try:\n            return sum(\n                hash_info.size\n                for _, hash_info in self.trie.iteritems()  # noqa: B301\n            )\n        except TypeError:\n            return None\n\n    @property\n    def nfiles(self):\n        return len(self.trie)\n\n    def items(self, path_info=None):\n        for key, hash_info in self.trie.iteritems():  # noqa: B301\n            path = posixpath.sep.join(key)\n            if path_info is not None:\n                path = path_info / path\n            yield path, hash_info\n\n    @classmethod\n    def from_list(cls, lst):\n        ret = DirInfo()\n        for _entry in lst:\n            entry = _entry.copy()\n            relpath = entry.pop(cls.PARAM_RELPATH)\n            parts = tuple(relpath.split(posixpath.sep))\n            ret.trie[parts] = HashInfo.from_dict(entry)\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dir_info.py_DirInfo.to_list_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dir_info.py_DirInfo.to_list_", "embedding": null, "metadata": {"file_path": "dvc/dir_info.py", "file_name": "dir_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 84, "end_line": 103, "span_ids": ["DirInfo.to_list", "DirInfo.merge"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DirInfo:\n\n    def to_list(self):\n        # Sorting the list by path to ensure reproducibility\n        return sorted(\n            (\n                {\n                    # NOTE: not using hash_info.to_dict() because we don't want\n                    # size/nfiles fields at this point.\n                    hash_info.name: hash_info.value,\n                    self.PARAM_RELPATH: posixpath.sep.join(parts),\n                }\n                for parts, hash_info in self.trie.iteritems()  # noqa: B301\n            ),\n            key=itemgetter(self.PARAM_RELPATH),\n        )\n\n    def merge(self, ancestor, their):\n        merged = DirInfo()\n        merged.trie = _merge(ancestor.trie, self.trie, their.trie)\n        return merged", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_PipelineFile_PipelineFile._check_if_parametrized.if_stage_raw_data_paramet.raise_ParametrizedDumpErr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_PipelineFile_PipelineFile._check_if_parametrized.if_stage_raw_data_paramet.raise_ParametrizedDumpErr", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 176, "end_line": 207, "span_ids": ["PipelineFile._check_if_parametrized", "PipelineFile._dump_lockfile", "PipelineFile._lockfile", "PipelineFile", "PipelineFile.dump"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PipelineFile(FileMixin):\n    \"\"\"Abstraction for pipelines file, .yaml + .lock combined.\"\"\"\n\n    from dvc.schema import COMPILED_MULTI_STAGE_SCHEMA as SCHEMA\n\n    @property\n    def _lockfile(self):\n        return Lockfile(self.repo, os.path.splitext(self.path)[0] + \".lock\")\n\n    def dump(\n        self, stage, update_pipeline=True, update_lock=True, **kwargs\n    ):  # pylint: disable=arguments-differ\n        \"\"\"Dumps given stage appropriately in the dvcfile.\"\"\"\n        from dvc.stage import PipelineStage\n\n        assert isinstance(stage, PipelineStage)\n        if self.verify:\n            check_dvc_filename(self.path)\n\n        if update_pipeline and not stage.is_data_source:\n            self._dump_pipeline_file(stage)\n\n        if update_lock:\n            self._dump_lockfile(stage)\n\n    def _dump_lockfile(self, stage):\n        self._lockfile.dump(stage)\n\n    @staticmethod\n    def _check_if_parametrized(stage):\n        if stage.raw_data.parametrized:\n            raise ParametrizedDumpError(f\"cannot dump a parametrized {stage}\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_PipelineFile.stage_PipelineFile.merge.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/dvcfile.py_PipelineFile.stage_PipelineFile.merge.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/dvcfile.py", "file_name": "dvcfile.py", "file_type": "text/x-python", "category": "implementation", "start_line": 234, "end_line": 275, "span_ids": ["PipelineFile.stage", "PipelineFile.stages", "PipelineFile.remove_stage", "PipelineFile.merge", "PipelineFile.remove"], "tokens": 254}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class PipelineFile(FileMixin):\n\n    @property\n    def stage(self):\n        raise DvcException(\n            \"PipelineFile has multiple stages. Please specify it's name.\"\n        )\n\n    @property\n    def stages(self):\n        data, _ = self._load()\n        lockfile_data = self._lockfile.load()\n        return StageLoader(self, data, lockfile_data)\n\n    def remove(self, force=False):\n        if not force:\n            logger.warning(\"Cannot remove pipeline file.\")\n            return\n\n        super().remove()\n        self._lockfile.remove()\n\n    def remove_stage(self, stage):\n        self._lockfile.remove_stage(stage)\n        if not self.exists():\n            return\n\n        with open(self.path, \"r\") as f:\n            d = parse_yaml_for_update(f.read(), self.path)\n\n        self.validate(d, self.path)\n        if stage.name not in d.get(\"stages\", {}):\n            return\n\n        logger.debug(\"Removing '%s' from '%s'\", stage.name, self.path)\n        del d[\"stages\"][stage.name]\n\n        if d[\"stages\"]:\n            dump_yaml(self.path, d)\n        else:\n            super().remove()\n\n    def merge(self, ancestor, other):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/hash_info.py_from_collections_import_O_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/hash_info.py_from_collections_import_O_", "embedding": null, "metadata": {"file_path": "dvc/hash_info.py", "file_name": "hash_info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 53, "span_ids": ["HashInfo.to_dict", "HashInfo.isdir", "imports", "HashInfo.from_dict", "HashInfo", "HashInfo.__bool__"], "tokens": 321}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import OrderedDict\nfrom dataclasses import dataclass, field\nfrom typing import Dict, Optional\n\nHASH_DIR_SUFFIX = \".dir\"\n\nDirInfo = Dict[str, str]\n\n\n@dataclass\nclass HashInfo:\n    PARAM_SIZE = \"size\"\n    PARAM_NFILES = \"nfiles\"\n\n    name: Optional[str]\n    value: Optional[str]\n    dir_info: Optional[DirInfo] = field(default=None, compare=False)\n    size: Optional[int] = field(default=None, compare=False)\n    nfiles: Optional[int] = field(default=None, compare=False)\n\n    def __bool__(self):\n        return bool(self.value)\n\n    @classmethod\n    def from_dict(cls, d):\n        _d = d.copy() if d else {}\n        size = _d.pop(cls.PARAM_SIZE, None)\n        nfiles = _d.pop(cls.PARAM_NFILES, None)\n\n        if not _d:\n            return cls(None, None)\n\n        ((name, value),) = _d.items()\n        return cls(name, value, size=size, nfiles=nfiles)\n\n    def to_dict(self):\n        ret = OrderedDict()\n        if not self:\n            return ret\n\n        ret[self.name] = self.value\n        if self.size is not None:\n            ret[self.PARAM_SIZE] = self.size\n        if self.nfiles is not None:\n            ret[self.PARAM_NFILES] = self.nfiles\n        return ret\n\n    @property\n    def isdir(self):\n        if not self:\n            return False\n        return self.value.endswith(HASH_DIR_SUFFIX)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py__get_caches__get_remotes.return._join_schemes_or_No": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/info.py__get_caches__get_remotes.return._join_schemes_or_No", "embedding": null, "metadata": {"file_path": "dvc/info.py", "file_name": "info.py", "file_type": "text/x-python", "category": "implementation", "start_line": 70, "end_line": 87, "span_ids": ["_get_caches", "_get_remotes"], "tokens": 104}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_caches(cache):\n    caches = (\n        cache_type\n        for cache_type, cache_instance in cache.by_scheme()\n        if cache_instance\n    )\n\n    # Caches will be always non-empty including the local cache\n    return \", \".join(caches)\n\n\ndef _get_remotes(config):\n    schemes = (\n        get_tree_cls(get_tree_config(config, name=remote)).scheme\n        for remote in config[\"remote\"]\n    )\n\n    return \", \".join(schemes) or \"None\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/main.py__Main_entry_point_for_d_debug.try_.except_Exception_.raise": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/main.py__Main_entry_point_for_d_debug.try_.except_Exception_.raise", "embedding": null, "metadata": {"file_path": "dvc/main.py", "file_name": "main.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["profile", "debug", "docstring"], "tokens": 293}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Main entry point for dvc CLI.\"\"\"\n\nimport errno\nimport logging\nfrom contextlib import contextmanager\n\nfrom dvc import analytics\nfrom dvc.cli import parse_args\nfrom dvc.config import ConfigError\nfrom dvc.exceptions import DvcException, DvcParserError, NotDvcRepoError\nfrom dvc.external_repo import clean_repos\nfrom dvc.logger import FOOTER, disable_other_loggers\nfrom dvc.tree.pool import close_pools\nfrom dvc.utils import error_link\n\n# Workaround for CPython bug. See [1] and [2] for more info.\n# [1] https://github.com/aws/aws-cli/blob/1.16.277/awscli/clidriver.py#L55\n# [2] https://bugs.python.org/issue29288\n\n\"\".encode(\"idna\")\n\nlogger = logging.getLogger(\"dvc\")\n\n\n@contextmanager\ndef profile(enable, dump):\n    if not enable:\n        yield\n        return\n\n    import cProfile\n\n    prof = cProfile.Profile()\n    prof.enable()\n\n    yield\n\n    prof.disable()\n    if not dump:\n        prof.print_stats(sort=\"cumtime\")\n        return\n    prof.dump_stats(dump)\n\n\n@contextmanager\ndef debug(enable):\n    try:\n        yield\n        return\n    except Exception:\n        if enable:\n            import pdb  # noqa: T100\n\n            pdb.post_mortem()\n        raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.dumpd_BaseOutput.dumpd.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.dumpd_BaseOutput.dumpd.return.ret", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 309, "end_line": 344, "span_ids": ["BaseOutput.dumpd"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    def dumpd(self):\n        ret = copy(self.hash_info.to_dict())\n        ret[self.PARAM_PATH] = self.def_path\n\n        if self.IS_DEPENDENCY:\n            return ret\n\n        if self.desc:\n            ret[self.PARAM_DESC] = self.desc\n\n        if not self.use_cache:\n            ret[self.PARAM_CACHE] = self.use_cache\n\n        if isinstance(self.metric, dict):\n            if (\n                self.PARAM_METRIC_XPATH in self.metric\n                and not self.metric[self.PARAM_METRIC_XPATH]\n            ):\n                del self.metric[self.PARAM_METRIC_XPATH]\n\n        if self.metric:\n            ret[self.PARAM_METRIC] = self.metric\n\n        if self.plot:\n            ret[self.PARAM_PLOT] = self.plot\n\n        if self.persist:\n            ret[self.PARAM_PERSIST] = self.persist\n\n        if self.checkpoint:\n            ret[self.PARAM_CHECKPOINT] = self.checkpoint\n\n        if self.isexec:\n            ret[self.PARAM_ISEXEC] = self.isexec\n\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/webhdfs.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/webhdfs.py__", "embedding": null, "metadata": {"file_path": "dvc/output/webhdfs.py", "file_name": "webhdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 8, "span_ids": ["imports", "WebHDFSOutput"], "tokens": 40}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.output.base import BaseOutput\n\nfrom ..tree.webhdfs import WebHDFSTree\n\n\nclass WebHDFSOutput(BaseOutput):\n    TREE_CLS = WebHDFSTree", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_MergeError_MergeError.__init__.super___init___": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_MergeError_MergeError.__init__.super___init___", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 36, "end_line": 51, "span_ids": ["MergeError.__init__", "MergeError"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class MergeError(ContextError):\n    def __init__(self, key, new, into):\n        self.key = key\n        if not isinstance(into[key], Node) or not isinstance(new, Node):\n            super().__init__(\n                f\"cannot merge '{key}' as it already exists in {into}\"\n            )\n            return\n\n        preexisting = into[key].meta.source\n        new_src = new.meta.source\n        path = new.meta.path()\n        super().__init__(\n            f\"cannot redefine '{path}' from '{new_src}'\"\n            f\" as it already exists in '{preexisting}'\"\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Meta_Meta.path.return._join_self_dpaths_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Meta_Meta.path.return._join_self_dpaths_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 75, "end_line": 92, "span_ids": ["Meta.__str__", "Meta.path", "Meta.update_path", "Meta"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@dataclass\nclass Meta:\n    source: Optional[str] = None\n    dpaths: List[str] = field(default_factory=list)\n    local: bool = True\n\n    @staticmethod\n    def update_path(meta: \"Meta\", path: Union[str, int]):\n        dpaths = meta.dpaths[:] + [str(path)]\n        return replace(meta, dpaths=dpaths)\n\n    def __str__(self):\n        string = self.source or \"<local>\"\n        string += \":\" + self.path()\n        return string\n\n    def path(self):\n        return \".\".join(self.dpaths)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py__default_meta_PRIMITIVES._int_float_str_bytes_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py__default_meta_PRIMITIVES._int_float_str_bytes_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 117, "end_line": 152, "span_ids": ["Value.__repr__", "Node.value", "Value.value", "Value.__str__", "Node", "_default_meta", "impl:5", "Value.get_sources", "Value", "Node.get_sources"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _default_meta():\n    return Meta(source=None)\n\n\nclass Node:\n    def get_sources(self):\n        raise NotImplementedError\n\n    @property\n    @abstractmethod\n    def value(self):\n        pass\n\n\n@dataclass\nclass Value(Node):\n    _value: Any\n    meta: Meta = field(\n        compare=False, default_factory=_default_meta, repr=False\n    )\n\n    def __repr__(self):\n        return repr(self._value)\n\n    def __str__(self) -> str:\n        return str(self._value)\n\n    def get_sources(self):\n        return {self.meta.source: self.meta.path()}\n\n    @property\n    def value(self):\n        return self._value\n\n\nPRIMITIVES = (int, float, str, bytes, bool)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Container_Container._convert_with_meta.if_value_is_None_or_isins.else_.raise_TypeError_msg_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Container_Container._convert_with_meta.if_value_is_None_or_isins.else_.raise_TypeError_msg_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 133, "end_line": 161, "span_ids": ["Container.__init__", "Container._convert", "Container._convert_with_meta", "Container"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Container(Node, ABC):\n    meta: Meta\n    data: Union[list, dict]\n    _key_transform = staticmethod(identity)\n\n    def __init__(self, meta=None) -> None:\n        self.meta = meta or _default_meta()\n\n    def _convert(self, key, value):\n        meta = Meta.update_path(self.meta, key)\n        return self._convert_with_meta(value, meta)\n\n    @staticmethod\n    def _convert_with_meta(value, meta: Meta = None):\n        if value is None or isinstance(value, PRIMITIVES):\n            assert meta\n            return Value(value, meta=meta)\n        elif isinstance(value, Node):\n            return value\n        elif isinstance(value, (list, dict)):\n            assert meta\n            container = CtxDict if isinstance(value, dict) else CtxList\n            return container(value, meta=meta)\n        else:\n            msg = (\n                \"Unsupported value of type \"\n                f\"'{type(value).__name__}' in '{meta}'\"\n            )\n            raise TypeError(msg)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Container.__repr___Container.__eq__.return.container_o_self": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Container.__repr___Container.__eq__.return.container_o_self", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 163, "end_line": 185, "span_ids": ["Container.__getitem__", "Container.__setitem__", "Container.__len__", "Container.__delitem__", "Container.__eq__", "Container.__repr__", "Container.__iter__"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Container(Node, ABC):\n\n    def __repr__(self):\n        return repr(self.data)\n\n    def __getitem__(self, key):\n        return self.data[key]\n\n    def __setitem__(self, key, value):\n        self.data[key] = self._convert(key, value)\n\n    def __delitem__(self, key):\n        del self.data[key]\n\n    def __len__(self):\n        return len(self.data)\n\n    def __iter__(self):\n        return iter(self.data)\n\n    def __eq__(self, o):\n        container = type(self)\n        if isinstance(o, container):\n            return o.data == self.data\n        return container(o) == self", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Container.select_Container.get_sources.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Container.select_Container.get_sources.return._", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 187, "end_line": 209, "span_ids": ["Container.get_sources", "Container.select"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Container(Node, ABC):\n\n    def select(self, key: str):\n        index, *rems = key.split(sep=\".\", maxsplit=1)\n        index = index.strip()\n        index = self._key_transform(index)\n        try:\n            d = self[index]\n        except LookupError as exc:\n            raise ValueError(\n                f\"Could not find '{index}' in {self.data}\"\n            ) from exc\n\n        if not rems:\n            return d\n\n        rem = rems[0]\n        if not isinstance(d, Container):\n            raise ValueError(\n                f\"{index} is a primitive value, cannot get '{rem}'\"\n            )\n        return d.select(rem)\n\n    def get_sources(self):\n        return {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.select_Context.select.return.node_value_if_unwrap_else": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.select_Context.select.return.node_value_if_unwrap_else", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 324, "end_line": 346, "span_ids": ["Context.select"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def select(\n        self, key: str, unwrap=False\n    ):  # pylint: disable=arguments-differ\n        \"\"\"Select the item using key, similar to `__getitem__`\n           but can track the usage of the data on interpolation\n           as well and can get from nested data structure by using\n           \".\" separated key (eg: \"key1.key2.key3\")\n\n        Args:\n            key: key to select value from\n            unwrap: Convert CtxList/CtxDict/Value items to it's original data\n                    Defaults to False. Note that the default is different from\n                    `resolve`.\n        \"\"\"\n        normalized = normalize_key(key)\n        try:\n            node = super().select(normalized)\n        except ValueError as exc:\n            raise KeyNotInContext(key) from exc\n\n        assert isinstance(node, Node)\n        self._track_data(node)\n        return node.value if unwrap else node", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py_str_interpolate_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py_str_interpolate_", "embedding": null, "metadata": {"file_path": "dvc/parsing/interpolate.py", "file_name": "interpolate.py", "file_type": "text/x-python", "category": "implementation", "start_line": 144, "end_line": 171, "span_ids": ["is_exact_string", "str_interpolate"], "tokens": 228}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def str_interpolate(\n    template: str,\n    matches: \"List[Match]\",\n    context: \"Context\",\n    skip_checks: bool = False,\n):\n    from .context import PRIMITIVES\n\n    index, buf = 0, \"\"\n    for match in matches:\n        start, end = match.span(0)\n        expr = get_expression(match, skip_checks=skip_checks)\n        value = context.select(expr, unwrap=True)\n        if value is not None and not isinstance(value, PRIMITIVES):\n            raise ParseError(\n                f\"Cannot interpolate data of type '{type(value).__name__}'\"\n            )\n        buf += template[index:start] + to_str(value)\n        index = end\n    buf += template[index:]\n    # regex already backtracks and avoids any `${` starting with\n    # backslashes(`\\`). We just need to replace those by `${`.\n    return buf.replace(r\"\\${\", BRACE_OPEN)\n\n\ndef is_exact_string(src: str, matches: \"List[Match]\"):\n    return len(matches) == 1 and src == matches[0].group(0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_errno_STATUS_MAP._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_errno_STATUS_MAP._", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 28, "span_ids": ["imports"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport hashlib\nimport logging\nfrom concurrent.futures import ThreadPoolExecutor, as_completed\nfrom functools import partial, wraps\n\nfrom funcy import concat\n\nfrom dvc.exceptions import DownloadError, UploadError\nfrom dvc.hash_info import HashInfo\n\nfrom ..progress import Tqdm\nfrom .index import RemoteIndex, RemoteIndexNoop\n\nlogger = logging.getLogger(__name__)\n\nSTATUS_OK = 1\nSTATUS_MISSING = 2\nSTATUS_NEW = 3\nSTATUS_DELETED = 4\n\nSTATUS_MAP = {\n    # (local_exists, remote_exists)\n    (True, True): STATUS_OK,\n    (False, False): STATUS_MISSING,\n    (True, False): STATUS_NEW,\n    (False, True): STATUS_DELETED,\n}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py__log_exceptions_index_locked.return.wrapper": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py__log_exceptions_index_locked.return.wrapper", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 31, "end_line": 58, "span_ids": ["index_locked", "_log_exceptions"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _log_exceptions(func, operation):\n    @wraps(func)\n    def wrapper(from_info, to_info, *args, **kwargs):\n        try:\n            func(from_info, to_info, *args, **kwargs)\n            return 0\n        except Exception as exc:  # pylint: disable=broad-except\n            # NOTE: this means we ran out of file descriptors and there is no\n            # reason to try to proceed, as we will hit this error anyways.\n            # pylint: disable=no-member\n            if isinstance(exc, OSError) and exc.errno == errno.EMFILE:\n                raise\n\n            logger.exception(\n                \"failed to %s '%s' to '%s'\", operation, from_info, to_info\n            )\n            return 1\n\n    return wrapper\n\n\ndef index_locked(f):\n    @wraps(f)\n    def wrapper(obj, *args, **kwargs):\n        with obj.index:\n            return f(obj, *args, **kwargs)\n\n    return wrapper", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote_Remote.gc.return.removed": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote_Remote.gc.return.removed", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 61, "end_line": 100, "span_ids": ["Remote.gc", "Remote.__init__", "Remote", "Remote.__repr__"], "tokens": 237}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n    \"\"\"Cloud remote class.\n\n    Provides methods for indexing and garbage collecting trees which contain\n    DVC remotes.\n    \"\"\"\n\n    INDEX_CLS = RemoteIndex\n\n    def __init__(self, tree):\n        from dvc.cache import get_cloud_cache\n\n        self.tree = tree\n        self.repo = tree.repo\n        self.cache = get_cloud_cache(self.tree)\n\n        config = tree.config\n        url = config.get(\"url\")\n        if url:\n            index_name = hashlib.sha256(url.encode(\"utf-8\")).hexdigest()\n            self.index = self.INDEX_CLS(\n                self.repo, index_name, dir_suffix=self.tree.CHECKSUM_DIR_SUFFIX\n            )\n        else:\n            self.index = RemoteIndexNoop()\n\n    def __repr__(self):\n        return \"{class_name}: '{path_info}'\".format(\n            class_name=type(self).__name__,\n            path_info=self.tree.path_info or \"No path\",\n        )\n\n    @index_locked\n    def gc(self, *args, **kwargs):\n        removed = self.cache.gc(*args, **kwargs)\n\n        if removed:\n            self.index.clear()\n\n        return removed", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote.status_Remote.hashes_exist.return.indexed_hashes_self_cac": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote.status_Remote.hashes_exist.return.indexed_hashes_self_cac", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 102, "end_line": 132, "span_ids": ["Remote.status", "Remote.hashes_exist"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    @index_locked\n    def status(\n        self,\n        cache,\n        named_cache,\n        jobs=None,\n        show_checksums=False,\n        download=False,\n        log_missing=True,\n    ):\n        # Return flattened dict containing all status info\n        dir_status, file_status, _ = self._status(\n            cache,\n            named_cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n            download=download,\n            log_missing=log_missing,\n        )\n        return dict(dir_status, **file_status)\n\n    def hashes_exist(self, hashes, **kwargs):\n        hashes = set(hashes)\n        indexed_hashes = set(self.index.intersection(hashes))\n        hashes -= indexed_hashes\n        indexed_hashes = list(indexed_hashes)\n        logger.debug(\"Matched '{}' indexed hashes\".format(len(indexed_hashes)))\n        if not hashes:\n            return indexed_hashes\n\n        return indexed_hashes + self.cache.hashes_exist(list(hashes), **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._status_Remote._status.return.self__make_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._status_Remote._status.return.self__make_status_", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 134, "end_line": 186, "span_ids": ["Remote._status"], "tokens": 400}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    def _status(\n        self,\n        cache,\n        named_cache,\n        jobs=None,\n        show_checksums=False,\n        download=False,\n        log_missing=True,\n    ):\n        \"\"\"Return a tuple of (dir_status_info, file_status_info, dir_contents).\n\n        dir_status_info contains status for .dir files, file_status_info\n        contains status for all other files, and dir_contents is a dict of\n        {dir_hash: set(file_hash, ...)} which can be used to map\n        a .dir file to its file contents.\n        \"\"\"\n        logger.debug(f\"Preparing to collect status from {self.tree.path_info}\")\n        md5s = set(named_cache.scheme_keys(cache.tree.scheme))\n\n        logger.debug(\"Collecting information from local cache...\")\n        local_exists = frozenset(\n            cache.hashes_exist(md5s, jobs=jobs, name=cache.cache_dir)\n        )\n\n        # This is a performance optimization. We can safely assume that,\n        # if the resources that we want to fetch are already cached,\n        # there's no need to check the remote storage for the existence of\n        # those files.\n        if download and local_exists == md5s:\n            remote_exists = local_exists\n        else:\n            logger.debug(\"Collecting information from remote cache...\")\n            remote_exists = set()\n            dir_md5s = set(named_cache.dir_keys(cache.tree.scheme))\n            if dir_md5s:\n                remote_exists.update(\n                    self._indexed_dir_hashes(cache, named_cache, dir_md5s)\n                )\n                md5s.difference_update(remote_exists)\n            if md5s:\n                remote_exists.update(\n                    self.hashes_exist(\n                        md5s, jobs=jobs, name=str(self.tree.path_info)\n                    )\n                )\n        return self._make_status(\n            cache,\n            named_cache,\n            show_checksums,\n            local_exists,\n            remote_exists,\n            log_missing,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._make_status_Remote._make_status.return.dir_status_file_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._make_status_Remote._make_status.return.dir_status_file_status_", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 188, "end_line": 221, "span_ids": ["Remote._make_status"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    def _make_status(\n        self,\n        cache,\n        named_cache,\n        show_checksums,\n        local_exists,\n        remote_exists,\n        log_missing,\n    ):\n        def make_names(hash_, names):\n            return {\"name\": hash_ if show_checksums else \" \".join(names)}\n\n        dir_status = {}\n        file_status = {}\n        dir_contents = {}\n        for hash_, item in named_cache[cache.tree.scheme].items():\n            if item.children:\n                dir_status[hash_] = make_names(hash_, item.names)\n                dir_contents[hash_] = set()\n                for child_hash, child in item.children.items():\n                    file_status[child_hash] = make_names(\n                        child_hash, child.names\n                    )\n                    dir_contents[hash_].add(child_hash)\n            else:\n                file_status[hash_] = make_names(hash_, item.names)\n\n        self._fill_statuses(dir_status, local_exists, remote_exists)\n        self._fill_statuses(file_status, local_exists, remote_exists)\n\n        if log_missing:\n            self._log_missing_caches(dict(dir_status, **file_status))\n\n        return dir_status, file_status, dir_contents", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._indexed_dir_hashes_Remote._indexed_dir_hashes.for_dir_hash_in_dir_exist.yield_from_file_hashes": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._indexed_dir_hashes_Remote._indexed_dir_hashes.for_dir_hash_in_dir_exist.yield_from_file_hashes", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 223, "end_line": 258, "span_ids": ["Remote._indexed_dir_hashes"], "tokens": 297}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    def _indexed_dir_hashes(self, cache, named_cache, dir_md5s):\n        # Validate our index by verifying all indexed .dir hashes\n        # still exist on the remote\n        indexed_dirs = set(self.index.dir_hashes())\n        indexed_dir_exists = set()\n        if indexed_dirs:\n            indexed_dir_exists.update(\n                self.cache.list_hashes_exists(indexed_dirs)\n            )\n            missing_dirs = indexed_dirs.difference(indexed_dir_exists)\n            if missing_dirs:\n                logger.debug(\n                    \"Remote cache missing indexed .dir hashes '{}', \"\n                    \"clearing remote index\".format(\", \".join(missing_dirs))\n                )\n                self.index.clear()\n\n        # Check if non-indexed (new) dir hashes exist on remote\n        dir_exists = dir_md5s.intersection(indexed_dir_exists)\n        dir_exists.update(self.cache.list_hashes_exists(dir_md5s - dir_exists))\n\n        # If .dir hash exists on the remote, assume directory contents\n        # still exists on the remote\n        for dir_hash in dir_exists:\n            file_hashes = list(\n                named_cache.child_keys(cache.tree.scheme, dir_hash)\n            )\n            if dir_hash not in self.index:\n                logger.debug(\n                    \"Indexing new .dir '{}' with '{}' nested files\".format(\n                        dir_hash, len(file_hashes)\n                    )\n                )\n                self.index.update([dir_hash], file_hashes)\n            yield dir_hash\n            yield from file_hashes", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._fill_statuses_Remote._get_plans.return._from_infos_to_infos_na": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._fill_statuses_Remote._get_plans.return._from_infos_to_infos_na", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 260, "end_line": 294, "span_ids": ["Remote._fill_statuses", "Remote._get_plans"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    @staticmethod\n    def _fill_statuses(hash_info_dir, local_exists, remote_exists):\n        # Using sets because they are way faster for lookups\n        local = set(local_exists)\n        remote = set(remote_exists)\n\n        for md5, info in hash_info_dir.items():\n            status = STATUS_MAP[(md5 in local, md5 in remote)]\n            info[\"status\"] = status\n\n    def _get_plans(self, cache_obj, download, status_info, status):\n        cache = []\n        path_infos = []\n        names = []\n        hashes = []\n        missing = []\n        for md5, info in Tqdm(\n            status_info.items(), desc=\"Analysing status\", unit=\"file\"\n        ):\n            if info[\"status\"] == status:\n                cache.append(cache_obj.tree.hash_to_path_info(md5))\n                path_infos.append(self.tree.hash_to_path_info(md5))\n                names.append(info[\"name\"])\n                hashes.append(md5)\n            elif info[\"status\"] == STATUS_MISSING:\n                missing.append(md5)\n\n        if download:\n            to_infos = cache\n            from_infos = path_infos\n        else:\n            to_infos = path_infos\n            from_infos = cache\n\n        return (from_infos, to_infos, names, hashes), missing", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._process_Remote._process.return.len_dir_plans_0_len_f": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._process_Remote._process.return.len_dir_plans_0_len_f", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 296, "end_line": 414, "span_ids": ["Remote._process"], "tokens": 804}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    def _process(\n        self,\n        cache,\n        named_cache,\n        jobs=None,\n        show_checksums=False,\n        download=False,\n    ):\n        logger.debug(\n            \"Preparing to {} '{}'\".format(\n                \"download data from\" if download else \"upload data to\",\n                self.tree.path_info,\n            )\n        )\n\n        if download:\n            func = partial(\n                _log_exceptions(self.tree.download, \"download\"),\n                dir_mode=cache.tree.dir_mode,\n                file_mode=cache.tree.file_mode,\n            )\n            status = STATUS_DELETED\n            desc = \"Downloading\"\n        else:\n            func = _log_exceptions(self.tree.upload, \"upload\")\n            status = STATUS_NEW\n            desc = \"Uploading\"\n\n        if jobs is None:\n            jobs = self.tree.JOBS\n\n        dir_status, file_status, dir_contents = self._status(\n            cache,\n            named_cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n            download=download,\n        )\n\n        dir_plans, _ = self._get_plans(cache, download, dir_status, status)\n        file_plans, missing_files = self._get_plans(\n            cache, download, file_status, status\n        )\n\n        total = len(dir_plans[0]) + len(file_plans[0])\n        if total == 0:\n            return 0\n\n        with Tqdm(total=total, unit=\"file\", desc=desc) as pbar:\n            func = pbar.wrap_fn(func)\n            with ThreadPoolExecutor(max_workers=jobs) as executor:\n                if download:\n                    from_infos, to_infos, names, _ = (\n                        d + f for d, f in zip(dir_plans, file_plans)\n                    )\n                    fails = sum(\n                        executor.map(func, from_infos, to_infos, names)\n                    )\n                else:\n                    # for uploads, push files first, and any .dir files last\n\n                    file_futures = {}\n                    for from_info, to_info, name, hash_ in zip(*file_plans):\n                        file_futures[hash_] = executor.submit(\n                            func, from_info, to_info, name\n                        )\n                    dir_futures = {}\n                    for from_info, to_info, name, dir_hash in zip(*dir_plans):\n                        # if for some reason a file contained in this dir is\n                        # missing both locally and in the remote, we want to\n                        # push whatever file content we have, but should not\n                        # push .dir file\n                        for file_hash in missing_files:\n                            if file_hash in dir_contents[dir_hash]:\n                                logger.debug(\n                                    \"directory '%s' contains missing files,\"\n                                    \"skipping .dir file upload\",\n                                    name,\n                                )\n                                break\n                        else:\n                            wait_futures = {\n                                future\n                                for file_hash, future in file_futures.items()\n                                if file_hash in dir_contents[dir_hash]\n                            }\n                            dir_futures[dir_hash] = executor.submit(\n                                self._dir_upload,\n                                func,\n                                wait_futures,\n                                from_info,\n                                to_info,\n                                name,\n                            )\n                    fails = sum(\n                        future.result()\n                        for future in concat(\n                            file_futures.values(), dir_futures.values()\n                        )\n                    )\n\n        if fails:\n            if download:\n                self.index.clear()\n                raise DownloadError(fails)\n            raise UploadError(fails)\n\n        if not download:\n            # index successfully pushed dirs\n            for dir_hash, future in dir_futures.items():\n                if future.result() == 0:\n                    file_hashes = dir_contents[dir_hash]\n                    logger.debug(\n                        \"Indexing pushed dir '{}' with \"\n                        \"'{}' nested files\".format(dir_hash, len(file_hashes))\n                    )\n                    self.index.update([dir_hash], file_hashes)\n\n        return len(dir_plans[0]) + len(file_plans[0])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._dir_upload_Remote.push.return.self__process_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._dir_upload_Remote.push.return.self__process_", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 416, "end_line": 438, "span_ids": ["Remote.push", "Remote._dir_upload"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    @staticmethod\n    def _dir_upload(func, futures, from_info, to_info, name):\n        for future in as_completed(futures):\n            if future.result():\n                # do not upload this .dir file if any file in this\n                # directory failed to upload\n                logger.debug(\n                    \"failed to upload full contents of '{}', \"\n                    \"aborting .dir file upload\".format(name)\n                )\n                logger.error(f\"failed to upload '{from_info}' to '{to_info}'\")\n                return 1\n        return func(from_info, to_info, name)\n\n    @index_locked\n    def push(self, cache, named_cache, jobs=None, show_checksums=False):\n        return self._process(\n            cache,\n            named_cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n            download=False,\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote.pull_Remote.pull.return.ret": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote.pull_Remote.pull.return.ret", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 440, "end_line": 464, "span_ids": ["Remote.pull"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    @index_locked\n    def pull(self, cache, named_cache, jobs=None, show_checksums=False):\n        ret = self._process(\n            cache,\n            named_cache,\n            jobs=jobs,\n            show_checksums=show_checksums,\n            download=True,\n        )\n\n        if not self.tree.verify:\n            with cache.tree.state:\n                for checksum in named_cache.scheme_keys(\"local\"):\n                    cache_file = cache.tree.hash_to_path_info(checksum)\n                    if cache.tree.exists(cache_file):\n                        # We can safely save here, as existing corrupted files\n                        # will be removed upon status, while files corrupted\n                        # during download will not be moved from tmp_file\n                        # (see `BaseTree.download()`)\n                        hash_info = HashInfo(\n                            cache.tree.PARAM_CHECKSUM, checksum\n                        )\n                        cache.tree.state.save(cache_file, hash_info)\n\n        return ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._log_missing_caches_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/base.py_Remote._log_missing_caches_", "embedding": null, "metadata": {"file_path": "dvc/remote/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 466, "end_line": 483, "span_ids": ["Remote._log_missing_caches"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Remote:\n\n    @staticmethod\n    def _log_missing_caches(hash_info_dict):\n        missing_caches = [\n            (md5, info)\n            for md5, info in hash_info_dict.items()\n            if info[\"status\"] == STATUS_MISSING\n        ]\n        if missing_caches:\n            missing_desc = \"\\n\".join(\n                \"name: {}, md5: {}\".format(info[\"name\"], md5)\n                for md5, info in missing_caches\n            )\n            msg = (\n                \"Some of the cache files do not exist neither locally \"\n                \"nor on remote. Missing cache files:\\n{}\".format(missing_desc)\n            )\n            logger.warning(msg)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/slow_link_detection.py__type_ignore_this.message._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/remote/slow_link_detection.py__type_ignore_this.message._", "embedding": null, "metadata": {"file_path": "dvc/remote/slow_link_detection.py", "file_name": "slow_link_detection.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 23, "span_ids": ["docstring"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# type: ignore\nimport logging\nimport sys\nimport time\nfrom functools import wraps\n\nimport colorama\n\nlogger = logging.getLogger(__name__)\nthis = sys.modules[__name__]\n\nthis.timeout_seconds = 10.0\nthis.already_displayed = False\nthis.message = (\n    \"You can cut execution time considerably by using a different \"\n    \"`cache.type` configuration.\\n\"\n    \"See {blue}https://dvc.org/doc/commands-reference/config#cache{reset} \"\n    \"for more information.\\n\"\n    \"To disable this message, run:\\n\"\n    \"`dvc config cache.slow_link_warning false`\".format(\n        blue=colorama.Fore.BLUE, reset=colorama.Fore.RESET\n    )\n)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo_Repo.get_url.staticmethod__get_url_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo_Repo.get_url.staticmethod__get_url_", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 65, "end_line": 94, "span_ids": ["Repo"], "tokens": 266}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n    DVC_DIR = \".dvc\"\n\n    from dvc.repo.add import add\n    from dvc.repo.brancher import brancher\n    from dvc.repo.checkout import checkout\n    from dvc.repo.commit import commit\n    from dvc.repo.destroy import destroy\n    from dvc.repo.diff import diff\n    from dvc.repo.fetch import fetch\n    from dvc.repo.freeze import freeze, unfreeze\n    from dvc.repo.gc import gc\n    from dvc.repo.get import get as _get\n    from dvc.repo.get_url import get_url as _get_url\n    from dvc.repo.imp import imp\n    from dvc.repo.imp_url import imp_url\n    from dvc.repo.install import install\n    from dvc.repo.ls import ls as _ls\n    from dvc.repo.move import move\n    from dvc.repo.pull import pull\n    from dvc.repo.push import push\n    from dvc.repo.remove import remove\n    from dvc.repo.reproduce import reproduce\n    from dvc.repo.run import run\n    from dvc.repo.status import status\n    from dvc.repo.update import update\n\n    ls = staticmethod(_ls)\n    get = staticmethod(_get)\n    get_url = staticmethod(_get_url)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.check_modified_graph_Repo.check_modified_graph.if_not_getattr_self__sk.build_graph_self_stages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.check_modified_graph_Repo.check_modified_graph.if_not_getattr_self__sk.build_graph_self_stages_", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 292, "end_line": 307, "span_ids": ["Repo.check_modified_graph"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    def check_modified_graph(self, new_stages):\n        \"\"\"Generate graph including the new stage to check for errors\"\"\"\n        # Building graph might be costly for the ones with many DVC-files,\n        # so we provide this undocumented hack to skip it. See [1] for\n        # more details. The hack can be used as:\n        #\n        #     repo = Repo(...)\n        #     repo._skip_graph_checks = True\n        #     repo.add(...)\n        #\n        # A user should care about not duplicating outs and not adding cycles,\n        # otherwise DVC might have an undefined behaviour.\n        #\n        # [1] https://github.com/iterative/dvc/issues/2671\n        if not getattr(self, \"_skip_graph_checks\", False):\n            build_graph(self.stages + new_stages)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._update_params_Experiments._update_params.self_scm_add_list_params_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._update_params_Experiments._update_params.self_scm_add_list_params_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 308, "end_line": 327, "span_ids": ["Experiments._update_params"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _update_params(self, params: dict):\n        \"\"\"Update experiment params files with the specified values.\"\"\"\n        from benedict import benedict\n\n        from dvc.utils.serialize import MODIFIERS\n\n        logger.debug(\"Using experiment params '%s'\", params)\n\n        for params_fname in params:\n            path = PathInfo(params_fname)\n            suffix = path.suffix.lower()\n            modify_data = MODIFIERS[suffix]\n            with modify_data(path, tree=self.repo.tree) as data:\n                benedict(data).merge(params[params_fname], overwrite=True)\n\n        # Force params file changes to be staged in git\n        # Otherwise in certain situations the changes to params file may be\n        # ignored when we `git stash` them since mtime is used to determine\n        # whether the file is dirty\n        self.scm.add(list(params.keys()))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._resume_checkpoint_Experiments._get_last_checkpoint.raise_DvcException_No_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._resume_checkpoint_Experiments._get_last_checkpoint.raise_DvcException_No_ex", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 389, "end_line": 452, "span_ids": ["Experiments._resume_checkpoint", "Experiments._get_last_checkpoint"], "tokens": 437}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _resume_checkpoint(\n        self, *args, checkpoint_resume: Optional[str] = None, **kwargs,\n    ):\n        \"\"\"Resume an existing (checkpoint) experiment.\n\n        Experiment will be reproduced and checked out into the user's\n        workspace.\n        \"\"\"\n        assert checkpoint_resume\n\n        if checkpoint_resume == self.LAST_CHECKPOINT:\n            # Continue from most recently committed checkpoint\n            resume_rev = self._get_last_checkpoint()\n        else:\n            resume_rev = self.scm.resolve_rev(checkpoint_resume)\n\n        allow_multiple = \"params\" in kwargs\n        branch: Optional[str] = self.get_branch_by_rev(\n            resume_rev, allow_multiple=allow_multiple\n        )\n        if not branch:\n            raise DvcException(\n                \"Could not find checkpoint experiment \"\n                f\"'{checkpoint_resume}'\"\n            )\n\n        last_applied = self.scm.get_ref(EXEC_APPLY)\n        if resume_rev != last_applied:\n            if last_applied is None:\n                msg = \"Current workspace does not contain an experiment. \"\n            else:\n                msg = (\n                    f\"Checkpoint '{checkpoint_resume[:7]}' does not match the \"\n                    \"most recently applied experiment in your workspace \"\n                    f\"('{last_applied[:7]}').\"\n                )\n\n            raise DvcException(\n                f\"{msg}\\n\"\n                \"To resume this experiment run:\\n\\n\"\n                f\"\\tdvc exp apply {checkpoint_resume[:7]}\\n\\n\"\n                \"And then retry this 'dvc exp res' command.\"\n            )\n\n        baseline_rev = self._get_baseline(branch)\n        logger.debug(\n            \"Resume from checkpoint '%s' with baseline '%s'\",\n            checkpoint_resume,\n            baseline_rev,\n        )\n\n        return self._stash_exp(\n            *args,\n            resume_rev=resume_rev,\n            baseline_rev=baseline_rev,\n            branch=branch,\n            **kwargs,\n        )\n\n    def _get_last_checkpoint(self):\n        rev = self.scm.get_ref(EXEC_CHECKPOINT)\n        if rev:\n            return rev\n        raise DvcException(\"No existing checkpoint experiment to continue\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/gc.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/gc.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/gc.py", "file_name": "gc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 49, "span_ids": ["gc", "imports"], "tokens": 285}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom typing import Optional\n\nfrom dvc.repo import locked\n\nfrom .utils import exp_refs\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\ndef gc(\n    repo,\n    all_branches: Optional[bool] = False,\n    all_tags: Optional[bool] = False,\n    all_commits: Optional[bool] = False,\n    workspace: Optional[bool] = False,\n    queued: Optional[bool] = False,\n):\n    keep_revs = set(\n        repo.brancher(\n            all_branches=all_branches,\n            all_tags=all_tags,\n            all_commits=all_commits,\n            sha_only=True,\n        )\n    )\n    if workspace:\n        keep_revs.add(repo.scm.get_rev())\n\n    if not keep_revs:\n        return 0\n\n    removed = 0\n    for ref_info in exp_refs(repo.scm):\n        if ref_info.baseline_sha not in keep_revs:\n            repo.scm.remove_ref(str(ref_info))\n            removed += 1\n\n    delete_stashes = []\n    for _, entry in repo.experiments.stash_revs.items():\n        if not queued or entry.baseline_rev not in keep_revs:\n            delete_stashes.append(entry.index)\n    for index in sorted(delete_stashes, reverse=True):\n        repo.experiments.stash.drop(index)\n    removed += len(delete_stashes)\n\n    return removed", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/gc.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/gc.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/gc.py", "file_name": "gc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 90, "span_ids": ["gc", "imports", "_raise_error_if_all_disabled"], "tokens": 527}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.cache import NamedCache\nfrom dvc.exceptions import InvalidArgumentError\n\nfrom ..scheme import Schemes\nfrom . import locked\n\nlogger = logging.getLogger(__name__)\n\n\ndef _raise_error_if_all_disabled(**kwargs):\n    if not any(kwargs.values()):\n        raise InvalidArgumentError(\n            \"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags` \"\n            \"`--all-experiments` or `--all-commits` needs to be set.\"\n        )\n\n\n@locked\ndef gc(\n    self,\n    all_branches=False,\n    cloud=False,\n    remote=None,\n    with_deps=False,\n    all_tags=False,\n    all_commits=False,\n    all_experiments=False,\n    force=False,\n    jobs=None,\n    repos=None,\n    workspace=False,\n):\n\n    # require `workspace` to be true to come into effect.\n    # assume `workspace` to be enabled if any of `all_tags`, `all_commits`,\n    # `all_experiments` or `all_branches` are enabled.\n    _raise_error_if_all_disabled(\n        workspace=workspace,\n        all_tags=all_tags,\n        all_commits=all_commits,\n        all_branches=all_branches,\n        all_experiments=all_experiments,\n    )\n\n    from contextlib import ExitStack\n\n    from dvc.repo import Repo\n\n    if not repos:\n        repos = []\n    all_repos = [Repo(path) for path in repos]\n\n    with ExitStack() as stack:\n        for repo in all_repos:\n            stack.enter_context(repo.lock)\n            stack.enter_context(repo.state)\n\n        used = NamedCache()\n        for repo in all_repos + [self]:\n            used.update(\n                repo.used_cache(\n                    all_branches=all_branches,\n                    with_deps=with_deps,\n                    all_tags=all_tags,\n                    all_commits=all_commits,\n                    all_experiments=all_experiments,\n                    remote=remote,\n                    force=force,\n                    jobs=jobs,\n                )\n            )\n\n    for scheme, cache in self.cache.by_scheme():\n        if not cache:\n            continue\n\n        removed = cache.gc(set(used.scheme_keys(scheme)), jobs=jobs)\n        if not removed:\n            logger.info(f\"No unused '{scheme}' cache to remove.\")\n\n    if not cloud:\n        return\n\n    remote = self.cloud.get_remote(remote, \"gc -c\")\n    removed = remote.gc(set(used.scheme_keys(Schemes.LOCAL)), jobs=jobs)\n    if not removed:\n        logger.info(\"No unused cache to remove from remote.\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/graph.py_build_graph_build_graph.return.G": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/graph.py_build_graph_build_graph.return.G", "embedding": null, "metadata": {"file_path": "dvc/repo/graph.py", "file_name": "graph.py", "file_type": "text/x-python", "category": "implementation", "start_line": 31, "end_line": 101, "span_ids": ["build_graph"], "tokens": 488}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def build_graph(stages, outs_trie=None):\n    \"\"\"Generate a graph by using the given stages on the given directory\n\n    The nodes of the graph are the stage's path relative to the root.\n\n    Edges are created when the output of one stage is used as a\n    dependency in other stage.\n\n    The direction of the edges goes from the stage to its dependency:\n\n    For example, running the following:\n\n        $ dvc run -o A \"echo A > A\"\n        $ dvc run -d A -o B \"echo B > B\"\n        $ dvc run -d B -o C \"echo C > C\"\n\n    Will create the following graph:\n\n           ancestors <--\n                       |\n            C.dvc -> B.dvc -> A.dvc\n            |          |\n            |          --> descendants\n            |\n            ------- pipeline ------>\n                       |\n                       v\n          (weakly connected components)\n\n    Args:\n        stages (list): used to build a graph from\n\n    Raises:\n        OutputDuplicationError: two outputs with the same path\n        StagePathAsOutputError: stage inside an output directory\n        OverlappingOutputPathsError: output inside output directory\n        CyclicGraphError: resulting graph has cycles\n    \"\"\"\n    import networkx as nx\n\n    from dvc.exceptions import StagePathAsOutputError\n\n    from ..path_info import PathInfo\n    from .trie import build_outs_trie\n\n    G = nx.DiGraph()\n\n    # Use trie to efficiently find overlapping outs and deps\n    outs_trie = outs_trie or build_outs_trie(stages)\n\n    for stage in stages:\n        out = outs_trie.shortest_prefix(PathInfo(stage.path).parts).value\n        if out:\n            raise StagePathAsOutputError(stage, str(out))\n\n    # Building graph\n    G.add_nodes_from(stages)\n    for stage in stages:\n        for dep in stage.deps:\n            if dep.path_info is None:\n                continue\n\n            dep_key = dep.path_info.parts\n            overlapping = [n.value for n in outs_trie.prefixes(dep_key)]\n            if outs_trie.has_subtrie(dep_key):\n                overlapping.extend(outs_trie.values(prefix=dep_key))\n\n            G.add_edges_from((stage, out.stage) for out in overlapping)\n    check_acyclic(G)\n\n    return G", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/graph.py__NOTE_using_stage_graph_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/graph.py__NOTE_using_stage_graph_", "embedding": null, "metadata": {"file_path": "dvc/repo/graph.py", "file_name": "graph.py", "file_type": "text/x-python", "category": "implementation", "start_line": 128, "end_line": 150, "span_ids": ["build_outs_graph", "build_graph"], "tokens": 189}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# NOTE: using stage graph instead of just list of stages to make sure that it\n# has already passed all the sanity checks like cycles/overlapping outputs and\n# so on.\ndef build_outs_graph(graph, outs_trie):\n    import networkx as nx\n\n    G = nx.DiGraph()\n\n    G.add_nodes_from(outs_trie.values())\n    for stage in graph.nodes():\n        for dep in stage.deps:\n            if dep.path_info is None:\n                # RepoDependency don't have a path_info\n                continue\n            dep_key = dep.path_info.parts\n            overlapping = [n.value for n in outs_trie.prefixes(dep_key)]\n            if outs_trie.has_subtrie(dep_key):\n                overlapping.extend(outs_trie.values(prefix=dep_key))\n\n            for from_out in stage.outs:\n                G.add_edges_from((from_out, out) for out in overlapping)\n    return G", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots.render_Plots.render.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots.render_Plots.render.return.result", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 71, "end_line": 96, "span_ids": ["Plots.render"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Plots:\n\n    @staticmethod\n    def render(data, revs=None, props=None, templates=None):\n        \"\"\"Renders plots\"\"\"\n        props = props or {}\n\n        # Merge data by plot file and apply overriding props\n        plots = _prepare_plots(data, revs, props)\n\n        result = {}\n        for datafile, desc in plots.items():\n            try:\n                result[datafile] = _render(\n                    datafile, desc[\"data\"], desc[\"props\"], templates\n                )\n            except PlotParsingError as e:\n                logger.debug(\n                    \"failed to read '%s' on '%s'\",\n                    e.path,\n                    e.revision,\n                    exc_info=True,\n                )\n\n        if not any(result.values()):\n            raise NoMetricsParsedError(\"plots\")\n\n        return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots.show_Plots._unset.for_prop_in_props_.out_plot_pop_prop_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots.show_Plots._unset.for_prop_in_props_.out_plot_pop_prop_", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 99, "end_line": 132, "span_ids": ["Plots.show", "Plots._unset", "Plots.diff"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Plots:\n\n    def show(self, targets=None, revs=None, props=None, templates=None):\n\n        data = self.collect(targets, revs)\n\n        # If any mentioned plot doesn't have any data then that's an error\n        targets = [targets] if isinstance(targets, str) else targets or []\n        for target in targets:\n            rpath = relpath(target, self.repo.root_dir)\n            if not any(\"data\" in d[rpath] for d in data.values()):\n                raise MetricDoesNotExistError([target])\n\n        # No data at all is a special error with a special message\n        if not data:\n            raise NoMetricsFoundError(\"plots\", \"--plots/--plots-no-cache\")\n\n        if templates is None:\n            templates = self.templates\n        return self.render(data, revs, props, templates)\n\n    def diff(self, *args, **kwargs):\n        from .diff import diff\n\n        return diff(self.repo, *args, **kwargs)\n\n    @staticmethod\n    def _unset(out, props):\n        missing = list(set(props) - set(out.plot.keys()))\n        if missing:\n            raise PropsNotFoundError(\n                f\"display properties {missing} not found in plot '{out}'\"\n            )\n\n        for prop in props:\n            out.plot.pop(prop)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots.modify_Plots.templates.return.PlotTemplates_self_repo_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/__init__.py_Plots.modify_Plots.templates.return.PlotTemplates_self_repo_d", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 134, "end_line": 168, "span_ids": ["Plots.modify", "Plots.templates"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Plots:\n\n    def modify(self, path, props=None, unset=None):\n        from dvc.dvcfile import Dvcfile\n\n        props = props or {}\n        template = props.get(\"template\")\n        if template:\n            self.templates.get_template(template)\n\n        (out,) = self.repo.find_outs_by_path(path)\n        if not out.plot and unset is not None:\n            raise NotAPlotError(out)\n\n        # This out will become a plot unless it is one already\n        if not isinstance(out.plot, dict):\n            out.plot = {}\n\n        if unset:\n            self._unset(out, unset)\n\n        out.plot.update(props)\n\n        # Empty dict will move it to non-plots\n        if not out.plot:\n            out.plot = True\n\n        out.verify_metric()\n\n        dvcfile = Dvcfile(self.repo, out.stage.path)\n        dvcfile.dump(out.stage, update_lock=False)\n\n    @cached_property\n    def templates(self):\n        from .template import PlotTemplates\n\n        return PlotTemplates(self.repo.dvc_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_NormalizedConfusionTemplate_NormalizedConfusionTemplate.DEFAULT_CONTENT._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_NormalizedConfusionTemplate_NormalizedConfusionTemplate.DEFAULT_CONTENT._", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 217, "end_line": 300, "span_ids": ["NormalizedConfusionTemplate"], "tokens": 556}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class NormalizedConfusionTemplate(Template):\n    DEFAULT_NAME = \"confusion_normalized\"\n    DEFAULT_CONTENT = {\n        \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.json\",\n        \"data\": {\"values\": Template.anchor(\"data\")},\n        \"title\": Template.anchor(\"title\"),\n        \"facet\": {\"field\": \"rev\", \"type\": \"nominal\"},\n        \"spec\": {\n            \"transform\": [\n                {\n                    \"aggregate\": [{\"op\": \"count\", \"as\": \"xy_count\"}],\n                    \"groupby\": [Template.anchor(\"y\"), Template.anchor(\"x\")],\n                },\n                {\n                    \"impute\": \"xy_count\",\n                    \"groupby\": [\"rev\", Template.anchor(\"y\")],\n                    \"key\": Template.anchor(\"x\"),\n                    \"value\": 0,\n                },\n                {\n                    \"impute\": \"xy_count\",\n                    \"groupby\": [\"rev\", Template.anchor(\"x\")],\n                    \"key\": Template.anchor(\"y\"),\n                    \"value\": 0,\n                },\n                {\n                    \"joinaggregate\": [\n                        {\"op\": \"sum\", \"field\": \"xy_count\", \"as\": \"sum_y\"}\n                    ],\n                    \"groupby\": [Template.anchor(\"y\")],\n                },\n                {\n                    \"calculate\": \"datum.xy_count / datum.sum_y\",\n                    \"as\": \"percent_of_y\",\n                },\n            ],\n            \"encoding\": {\n                \"x\": {\n                    \"field\": Template.anchor(\"x\"),\n                    \"type\": \"nominal\",\n                    \"sort\": \"ascending\",\n                    \"title\": Template.anchor(\"x_label\"),\n                },\n                \"y\": {\n                    \"field\": Template.anchor(\"y\"),\n                    \"type\": \"nominal\",\n                    \"sort\": \"ascending\",\n                    \"title\": Template.anchor(\"y_label\"),\n                },\n            },\n            \"layer\": [\n                {\n                    \"mark\": \"rect\",\n                    \"width\": 300,\n                    \"height\": 300,\n                    \"encoding\": {\n                        \"color\": {\n                            \"field\": \"percent_of_y\",\n                            \"type\": \"quantitative\",\n                            \"title\": \"\",\n                            \"scale\": {\"domain\": [0, 1]},\n                        }\n                    },\n                },\n                {\n                    \"mark\": \"text\",\n                    \"encoding\": {\n                        \"text\": {\n                            \"field\": \"percent_of_y\",\n                            \"type\": \"quantitative\",\n                            \"format\": \".2f\",\n                        },\n                        \"color\": {\n                            \"condition\": {\n                                \"test\": \"datum.percent_of_y > 0.5\",\n                                \"value\": \"white\",\n                            },\n                            \"value\": \"black\",\n                        },\n                    },\n                },\n            ],\n        },\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py__reproduce_stages__reproduce_stages.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py__reproduce_stages__reproduce_stages.return.result", "embedding": null, "metadata": {"file_path": "dvc/repo/reproduce.py", "file_name": "reproduce.py", "file_type": "text/x-python", "category": "implementation", "start_line": 123, "end_line": 200, "span_ids": ["_reproduce_stages"], "tokens": 599}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _reproduce_stages(\n    G, stages, downstream=False, single_item=False, on_unchanged=None, **kwargs\n):\n    r\"\"\"Derive the evaluation of the given node for the given graph.\n\n    When you _reproduce a stage_, you want to _evaluate the descendants_\n    to know if it make sense to _recompute_ it. A post-ordered search\n    will give us an order list of the nodes we want.\n\n    For example, let's say that we have the following pipeline:\n\n                               E\n                              / \\\n                             D   F\n                            / \\   \\\n                           B   C   G\n                            \\ /\n                             A\n\n    The derived evaluation of D would be: [A, B, C, D]\n\n    In case that `downstream` option is specified, the desired effect\n    is to derive the evaluation starting from the given stage up to the\n    ancestors. However, the `networkx.ancestors` returns a set, without\n    any guarantee of any order, so we are going to reverse the graph and\n    use a reverse post-ordered search using the given stage as a starting\n    point.\n\n                   E                                   A\n                  / \\                                 / \\\n                 D   F                               B   C   G\n                / \\   \\        --- reverse -->        \\ /   /\n               B   C   G                               D   F\n                \\ /                                     \\ /\n                 A                                       E\n\n    The derived evaluation of _downstream_ B would be: [B, D, E]\n    \"\"\"\n    steps = _get_steps(G, stages, downstream, single_item)\n\n    force_downstream = kwargs.pop(\"force_downstream\", False)\n    result = []\n    unchanged = []\n    # `ret` is used to add a cosmetic newline.\n    ret = []\n    checkpoint_func = kwargs.pop(\"checkpoint_func\", None)\n    for stage in steps:\n        if ret:\n            logger.info(\"\")\n\n        if checkpoint_func:\n            kwargs[\"checkpoint_func\"] = partial(\n                _repro_callback, checkpoint_func, unchanged\n            )\n\n        try:\n            ret = _reproduce_stage(stage, **kwargs)\n\n            if len(ret) == 0:\n                unchanged.extend([stage])\n            elif force_downstream:\n                # NOTE: we are walking our pipeline from the top to the\n                # bottom. If one stage is changed, it will be reproduced,\n                # which tells us that we should force reproducing all of\n                # the other stages down below, even if their direct\n                # dependencies didn't change.\n                kwargs[\"force\"] = True\n\n            if ret:\n                result.extend(ret)\n        except CheckpointKilledError:\n            raise\n        except Exception as exc:\n            raise ReproductionError(stage.relpath) from exc\n\n    if on_unchanged is not None:\n        on_unchanged(unchanged)\n    return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/trie.py_from_funcy_import_first_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/trie.py_from_funcy_import_first_", "embedding": null, "metadata": {"file_path": "dvc/repo/trie.py", "file_name": "trie.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 43, "span_ids": ["imports", "build_outs_trie"], "tokens": 291}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from funcy import first\nfrom pygtrie import Trie\n\nfrom dvc.exceptions import OutputDuplicationError, OverlappingOutputPathsError\n\n\ndef build_outs_trie(stages):\n    outs = Trie()\n\n    for stage in filter(bool, stages):  # bug? not using it later\n        for out in stage.outs:\n            out_key = out.path_info.parts\n\n            # Check for dup outs\n            if out_key in outs:\n                dup_stages = [stage, outs[out_key].stage]\n                raise OutputDuplicationError(str(out), dup_stages)\n\n            # Check for overlapping outs\n            if outs.has_subtrie(out_key):\n                parent = out\n                overlapping = first(outs.values(prefix=out_key))\n            else:\n                parent = outs.shortest_prefix(out_key).value\n                overlapping = out\n            if parent and overlapping:\n                msg = (\n                    \"The output paths:\\n'{}'('{}')\\n'{}'('{}')\\n\"\n                    \"overlap and are thus in the same tracked directory.\\n\"\n                    \"To keep reproducibility, outputs should be in separate \"\n                    \"tracked directories or tracked individually.\"\n                ).format(\n                    str(parent),\n                    parent.stage.addressing,\n                    str(overlapping),\n                    overlapping.stage.addressing,\n                )\n                raise OverlappingOutputPathsError(parent, overlapping, msg)\n\n            outs[out_key] = out\n\n    return outs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage_Stage.is_checkpoint.return.any_out_checkpoint_for_ou": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage_Stage.is_checkpoint.return.any_out_checkpoint_for_ou", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 112, "end_line": 246, "span_ids": ["Stage.__str__", "Stage.__repr__", "Stage.__init__", "Stage.is_checkpoint", "Stage.__hash__", "Stage.is_callback", "Stage.addressing", "Stage.is_data_source", "Stage.path", "Stage.dvcfile_3", "Stage", "Stage.relpath", "Stage.path_1", "Stage.is_repo_import", "Stage.path_in_repo", "Stage.__eq__", "Stage.dvcfile", "Stage.is_import"], "tokens": 846}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n    # rwlocked() confuses pylint\n\n    def __init__(\n        self,\n        repo,\n        path=None,\n        cmd=None,\n        wdir=os.curdir,\n        deps=None,\n        outs=None,\n        md5=None,\n        locked=False,  # backward compatibility\n        frozen=False,\n        always_changed=False,\n        stage_text=None,\n        dvcfile=None,\n        desc=None,\n        meta=None,\n    ):\n        if deps is None:\n            deps = []\n        if outs is None:\n            outs = []\n\n        self.repo = repo\n        self._path = path\n        self.cmd = cmd\n        self.wdir = wdir\n        self.outs = outs\n        self.deps = deps\n        self.md5 = md5\n        self.frozen = locked or frozen\n        self.always_changed = always_changed\n        self._stage_text = stage_text\n        self._dvcfile = dvcfile\n        self.desc = desc\n        self.meta = meta\n        self.raw_data = RawData()\n\n    @property\n    def path(self) -> str:\n        return self._path\n\n    @path.setter\n    def path(self, path: str):\n        self._path = path\n        self.__dict__.pop(\"path_in_repo\", None)\n        self.__dict__.pop(\"relpath\", None)\n\n    @property\n    def dvcfile(self):\n        if self.path and self._dvcfile and self.path == self._dvcfile.path:\n            return self._dvcfile\n\n        if not self.path:\n            raise DvcException(\n                \"Stage does not have any path set \"\n                \"and is detached from dvcfile.\"\n            )\n\n        from dvc.dvcfile import Dvcfile\n\n        self._dvcfile = Dvcfile(self.repo, self.path)\n        return self._dvcfile\n\n    @dvcfile.setter\n    def dvcfile(self, dvcfile):\n        self._dvcfile = dvcfile\n\n    def __repr__(self):\n        return f\"Stage: '{self.addressing}'\"\n\n    def __str__(self):\n        return f\"stage: '{self.addressing}'\"\n\n    @property\n    def addressing(self) -> str:\n        \"\"\"\n        Useful for alternative presentations where we don't need\n        `Stage:` prefix.\n        \"\"\"\n        return self.relpath if self.path else \"No path\"\n\n    def __hash__(self):\n        return hash(self.path_in_repo)\n\n    def __eq__(self, other):\n        return (\n            self.__class__ == other.__class__\n            and self.repo is other.repo\n            and self.path_in_repo == other.path_in_repo\n        )\n\n    @cached_property\n    def path_in_repo(self):\n        return relpath(self.path, self.repo.root_dir)\n\n    @cached_property\n    def relpath(self):\n        return relpath(self.path)\n\n    @property\n    def is_data_source(self):\n        \"\"\"Whether the DVC-file was created with `dvc add` or `dvc import`\"\"\"\n        return self.cmd is None\n\n    @property\n    def is_callback(self):\n        \"\"\"\n        A callback stage is always considered as changed,\n        so it runs on every `dvc repro` call.\n        \"\"\"\n        return not self.is_data_source and len(self.deps) == 0\n\n    @property\n    def is_import(self):\n        \"\"\"Whether the DVC-file was created with `dvc import`.\"\"\"\n        return not self.cmd and len(self.deps) == 1 and len(self.outs) == 1\n\n    @property\n    def is_repo_import(self):\n        if not self.is_import:\n            return False\n\n        return isinstance(self.deps[0], dependency.RepoDependency)\n\n    @property\n    def is_checkpoint(self):\n        \"\"\"\n        A stage containing checkpoint outs is always considered as changed\n        since the checkpoint out is a circular dependency.\n        \"\"\"\n        return any(out.checkpoint for out in self.outs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.changed_deps_Stage.remove.if_purge_.self_dvcfile_remove_stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.changed_deps_Stage.remove.if_purge_.self_dvcfile_remove_stage", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 254, "end_line": 342, "span_ids": ["Stage.changed_deps", "Stage.remove_outs", "Stage.changed_stage", "Stage.unprotect_outs", "Stage.remove", "Stage.changed_outs", "Stage.changed", "Stage.ignore_remove_outs", "Stage._changed_deps"], "tokens": 564}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    def changed_deps(self):\n        if self.frozen:\n            return False\n\n        if self.is_callback:\n            logger.debug(\n                \"%s has a command but no dependencies\", self.addressing\n            )\n            return True\n\n        if self.always_changed or self.is_checkpoint:\n            return True\n\n        return self._changed_deps()\n\n    def _changed_deps(self):\n        for dep in self.deps:\n            status = dep.status()\n            if status:\n                logger.debug(\n                    \"Dependency '{dep}' of {stage} changed because it is \"\n                    \"'{status}'.\".format(\n                        dep=dep, stage=self, status=status[str(dep)]\n                    )\n                )\n                return True\n        return False\n\n    def changed_outs(self):\n        for out in self.outs:\n            status = out.status()\n            if status:\n                logger.debug(\n                    \"Output '{out}' of {stage} changed because it is \"\n                    \"'{status}'\".format(\n                        out=out, stage=self, status=status[str(out)]\n                    )\n                )\n                return True\n\n        return False\n\n    def changed_stage(self):\n        changed = self.md5 != self.compute_md5()\n        if changed:\n            logger.debug(self._changed_stage_entry())\n        return changed\n\n    @rwlocked(read=[\"deps\", \"outs\"])\n    def changed(self):\n        is_changed = (\n            # Short-circuit order: stage md5 is fast,\n            # deps are expected to change\n            self.changed_stage()\n            or self.changed_deps()\n            or self.changed_outs()\n        )\n        if is_changed:\n            logger.debug(\"%s changed.\", self)\n        return is_changed\n\n    @rwlocked(write=[\"outs\"])\n    def remove_outs(self, ignore_remove=False, force=False):\n        \"\"\"Used mainly for `dvc remove --outs` and :func:`Stage.reproduce`.\"\"\"\n        for out in self.outs:\n            if (out.persist or out.checkpoint) and not force:\n                out.unprotect()\n                continue\n\n            logger.debug(f\"Removing output '{out}' of {self}.\")\n            out.remove(ignore_remove=ignore_remove)\n\n    def unprotect_outs(self):\n        for out in self.outs:\n            out.unprotect()\n\n    def ignore_remove_outs(self):\n        for out in self.outs:\n            out.ignore_remove()\n\n    @rwlocked(write=[\"outs\"])\n    def remove(self, force=False, remove_outs=True, purge=True):\n        if remove_outs:\n            self.remove_outs(ignore_remove=True, force=force)\n        else:\n            self.unprotect_outs()\n            self.ignore_remove_outs()\n        if purge:\n            self.dvcfile.remove_stage(self)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_logging_logger.logging_getLogger___name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_logging_logger.logging_getLogger___name_", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 18, "span_ids": ["imports"], "tokens": 130}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom collections.abc import Mapping\nfrom copy import deepcopy\nfrom itertools import chain\n\nfrom funcy import cached_property, get_in, lcat, once, project\n\nfrom dvc import dependency, output\nfrom dvc.hash_info import HashInfo\nfrom dvc.parsing import FOREACH_KWD, JOIN, DataResolver, EntryNotFound\nfrom dvc.path_info import PathInfo\n\nfrom . import PipelineStage, Stage, loads_from\nfrom .exceptions import StageNameUnspecified, StageNotFound\nfrom .params import StageParams\nfrom .utils import fill_stage_dependencies, resolve_paths\n\nlogger = logging.getLogger(__name__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader.fill_from_lock_StageLoader.fill_from_lock.for_key_item_in_items_.item.hash_info.HashInfo_from_dict_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader.fill_from_lock_StageLoader.fill_from_lock.for_key_item_in_items_.item.hash_info.HashInfo_from_dict_info_", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 40, "end_line": 65, "span_ids": ["StageLoader.fill_from_lock"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoader(Mapping):\n\n    @staticmethod\n    def fill_from_lock(stage, lock_data=None):\n        \"\"\"Fill values for params, checksums for outs and deps from lock.\"\"\"\n        if not lock_data:\n            return\n\n        assert isinstance(lock_data, dict)\n        items = chain(\n            ((StageParams.PARAM_DEPS, dep) for dep in stage.deps),\n            ((StageParams.PARAM_OUTS, out) for out in stage.outs),\n        )\n\n        checksums = {\n            key: {item[\"path\"]: item for item in lock_data.get(key, {})}\n            for key in [StageParams.PARAM_DEPS, StageParams.PARAM_OUTS]\n        }\n        for key, item in items:\n            path = item.def_path\n            if isinstance(item, dependency.ParamsDependency):\n                item.fill_values(get_in(lock_data, [stage.PARAM_PARAMS, path]))\n                continue\n            info = get_in(checksums, [key, path], {})\n            info = info.copy()\n            info.pop(\"path\", None)\n            item.isexec = info.pop(\"isexec\", None)\n            item.hash_info = HashInfo.from_dict(info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py__checkpoint_run__checkpoint_run.while_True_.if_done_wait_1_.return": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py__checkpoint_run__checkpoint_run.while_True_.if_done_wait_1_.return", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 151, "end_line": 168, "span_ids": ["_checkpoint_run"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _checkpoint_run(stage, callback_func, done, proc, killed):\n    \"\"\"Run callback_func whenever checkpoint signal file is present.\"\"\"\n    signal_path = os.path.join(stage.repo.tmp_dir, CHECKPOINT_SIGNAL_FILE)\n    while True:\n        if os.path.exists(signal_path):\n            try:\n                _run_callback(stage, callback_func)\n            except Exception:  # pylint: disable=broad-except\n                logger.exception(\n                    \"Error generating checkpoint, %s will be aborted\", stage\n                )\n                _kill(proc)\n                killed.set()\n            finally:\n                logger.debug(\"Remove checkpoint signal file\")\n                os.remove(signal_path)\n        if done.wait(1):\n            return", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py__kill_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py__kill_", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 171, "end_line": 190, "span_ids": ["_run_callback", "_kill_nt", "_kill"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _kill(proc):\n    if os.name == \"nt\":\n        return _kill_nt(proc)\n    proc.terminate()\n    proc.wait()\n\n\ndef _kill_nt(proc):\n    # windows stages are spawned with shell=True, proc is the shell process and\n    # not the actual stage process - we have to kill the entire tree\n    subprocess.call([\"taskkill\", \"/F\", \"/T\", \"/PID\", str(proc.pid)])\n\n\n@relock_repo\ndef _run_callback(stage, callback_func):\n    stage.save(allow_missing=True)\n    stage.commit(allow_missing=True)\n    logger.debug(\"Running checkpoint callback for stage '%s'\", stage)\n    callback_func()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_from_collections_import_O_sort_by_path.partial_sorted_key_attrg": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_from_collections_import_O_sort_by_path.partial_sorted_key_attrg", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 35, "span_ids": ["imports"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import OrderedDict\nfrom functools import partial\nfrom operator import attrgetter\nfrom typing import TYPE_CHECKING, List, no_type_check\n\nfrom funcy import post_processing\n\nfrom dvc.dependency import ParamsDependency\nfrom dvc.output import BaseOutput\nfrom dvc.utils.collections import apply_diff\nfrom dvc.utils.serialize import parse_yaml_for_update\n\nfrom .params import StageParams\nfrom .utils import resolve_wdir, split_params_deps\n\nif TYPE_CHECKING:\n    from dvc.stage import PipelineStage, Stage\n\nPARAM_PARAMS = ParamsDependency.PARAM_PARAMS\nPARAM_PATH = ParamsDependency.PARAM_PATH\n\nPARAM_DEPS = StageParams.PARAM_DEPS\nPARAM_OUTS = StageParams.PARAM_OUTS\n\nPARAM_CACHE = BaseOutput.PARAM_CACHE\nPARAM_METRIC = BaseOutput.PARAM_METRIC\nPARAM_PLOT = BaseOutput.PARAM_PLOT\nPARAM_PERSIST = BaseOutput.PARAM_PERSIST\nPARAM_CHECKPOINT = BaseOutput.PARAM_CHECKPOINT\nPARAM_DESC = BaseOutput.PARAM_DESC\n\nDEFAULT_PARAMS_FILE = ParamsDependency.DEFAULT_PARAMS_FILE\n\n\nsort_by_path = partial(sorted, key=attrgetter(\"def_path\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py__get_flags__serialize_outs.return.outs_metrics_plots": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py__get_flags__serialize_outs.return.outs_metrics_plots", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 38, "end_line": 70, "span_ids": ["_serialize_outs", "_get_flags", "_serialize_out"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@post_processing(OrderedDict)\ndef _get_flags(out):\n    if out.desc:\n        yield PARAM_DESC, out.desc\n    if not out.use_cache:\n        yield PARAM_CACHE, False\n    if out.checkpoint:\n        yield PARAM_CHECKPOINT, True\n    if out.persist:\n        yield PARAM_PERSIST, True\n    if out.plot and isinstance(out.plot, dict):\n        # notice `out.plot` is not sorted\n        # `out.plot` is in the same order as is in the file when read\n        # and, should be dumped as-is without any sorting\n        yield from out.plot.items()\n\n\ndef _serialize_out(out):\n    flags = _get_flags(out)\n    return out.def_path if not flags else {out.def_path: flags}\n\n\n@no_type_check\ndef _serialize_outs(outputs: List[BaseOutput]):\n    outs, metrics, plots = [], [], []\n    for out in sort_by_path(outputs):\n        bucket = outs\n        if out.plot:\n            bucket = plots\n        elif out.metric:\n            bucket = metrics\n        bucket.append(_serialize_out(out))\n    return outs, metrics, plots", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.get_State.get.return.HashInfo_md5_value_si": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/state.py_State.get_State.get.return.HashInfo_md5_value_si", "embedding": null, "metadata": {"file_path": "dvc/state.py", "file_name": "state.py", "file_type": "text/x-python", "category": "implementation", "start_line": 426, "end_line": 458, "span_ids": ["State.get"], "tokens": 276}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class State(StateBase):\n\n    def get(self, path_info):\n        \"\"\"Gets the hash for the specified path info. Hash will be\n        retrieved from the state database if available.\n\n        Args:\n            path_info (dict): path info to get the hash for.\n\n        Returns:\n            HashInfo or None: hash for the specified path info or None if it\n            doesn't exist in the state database.\n        \"\"\"\n        assert isinstance(path_info, str) or path_info.scheme == \"local\"\n        path = os.fspath(path_info)\n\n        # NOTE: use os.path.exists instead of LocalTree.exists\n        # because it uses lexists() and will return True for broken\n        # symlinks that we cannot stat() in get_mtime_and_size\n        if not os.path.exists(path):\n            return None\n\n        actual_mtime, actual_size = get_mtime_and_size(path, self.tree)\n        actual_inode = get_inode(path)\n\n        existing_record = self.get_state_record_for_inode(actual_inode)\n        if not existing_record:\n            return None\n\n        mtime, size, value, _ = existing_record\n        if self._file_metadata_changed(actual_mtime, mtime, actual_size, size):\n            return None\n\n        self._update_state_record_timestamp_for_inode(actual_inode)\n        return HashInfo(\"md5\", value, size=int(actual_size))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/__init__.py_posixpath_get_tree_config.return._resolve_remote_refs_conf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/__init__.py_posixpath_get_tree_config.return._resolve_remote_refs_conf", "embedding": null, "metadata": {"file_path": "dvc/tree/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 48, "span_ids": ["get_tree_config", "imports", "get_tree_cls"], "tokens": 292}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import posixpath\nfrom urllib.parse import urlparse\n\nfrom .azure import AzureTree\nfrom .gdrive import GDriveTree\nfrom .gs import GSTree\nfrom .hdfs import HDFSTree\nfrom .http import HTTPTree\nfrom .https import HTTPSTree\nfrom .local import LocalTree\nfrom .oss import OSSTree\nfrom .s3 import S3Tree\nfrom .ssh import SSHTree\nfrom .webdav import WebDAVTree\nfrom .webdavs import WebDAVSTree\nfrom .webhdfs import WebHDFSTree\n\nTREES = [\n    AzureTree,\n    GDriveTree,\n    GSTree,\n    HDFSTree,\n    HTTPTree,\n    HTTPSTree,\n    S3Tree,\n    SSHTree,\n    OSSTree,\n    WebDAVTree,\n    WebDAVSTree,\n    WebHDFSTree\n    # NOTE: LocalTree is the default\n]\n\n\ndef get_tree_cls(remote_conf):\n    for tree_cls in TREES:\n        if tree_cls.supported(remote_conf):\n            return tree_cls\n    return LocalTree\n\n\ndef get_tree_config(config, **kwargs):\n    name = kwargs.get(\"name\")\n    if name:\n        remote_conf = config[\"remote\"][name.lower()]\n    else:\n        remote_conf = kwargs\n    return _resolve_remote_refs(config, remote_conf)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_logging_use_state.with_tree_state_.return.call_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_logging_use_state.with_tree_state_.return.call_", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 45, "span_ids": ["RemoteMissingDepsError", "imports", "use_state", "RemoteCmdError", "RemoteActionNotImplemented", "RemoteCmdError.__init__", "RemoteActionNotImplemented.__init__"], "tokens": 314}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom concurrent.futures import ThreadPoolExecutor, as_completed\nfrom functools import partial\nfrom multiprocessing import cpu_count\nfrom typing import Any, ClassVar, Dict, Optional\nfrom urllib.parse import urlparse\n\nfrom funcy import cached_property, decorator\n\nfrom dvc.dir_info import DirInfo\nfrom dvc.exceptions import DvcException, DvcIgnoreInCollectedDirError\nfrom dvc.ignore import DvcIgnore\nfrom dvc.path_info import URLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.state import StateNoop\nfrom dvc.utils import tmp_fname\nfrom dvc.utils.fs import makedirs, move\nfrom dvc.utils.http import open_url\n\nlogger = logging.getLogger(__name__)\n\n\nclass RemoteCmdError(DvcException):\n    def __init__(self, remote, cmd, ret, err):\n        super().__init__(\n            \"{remote} command '{cmd}' finished with non-zero return code\"\n            \" {ret}': {err}\".format(remote=remote, cmd=cmd, ret=ret, err=err)\n        )\n\n\nclass RemoteActionNotImplemented(DvcException):\n    def __init__(self, action, scheme):\n        m = f\"{action} is not supported for {scheme} remotes\"\n        super().__init__(m)\n\n\nclass RemoteMissingDepsError(DvcException):\n    pass\n\n\n@decorator\ndef use_state(call):\n    tree = call._args[0]  # pylint: disable=protected-access\n    with tree.state:\n        return call()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._collect_dir_BaseTree._collect_dir.return.dir_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._collect_dir_BaseTree._collect_dir.return.dir_info", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 306, "end_line": 334, "span_ids": ["BaseTree._collect_dir"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    def _collect_dir(self, path_info, **kwargs):\n\n        file_infos = set()\n\n        for fname in self.walk_files(path_info, **kwargs):\n            if DvcIgnore.DVCIGNORE_FILE == fname.name:\n                raise DvcIgnoreInCollectedDirError(fname.parent)\n\n            file_infos.add(fname)\n\n        hash_infos = {fi: self.state.get(fi) for fi in file_infos}\n        not_in_state = {fi for fi, hi in hash_infos.items() if hi is None}\n\n        new_hash_infos = self._calculate_hashes(not_in_state)\n        hash_infos.update(new_hash_infos)\n\n        dir_info = DirInfo()\n        for fi, hi in hash_infos.items():\n            # NOTE: this is lossy transformation:\n            #   \"hey\\there\" -> \"hey/there\"\n            #   \"hey/there\" -> \"hey/there\"\n            # The latter is fine filename on Windows, which\n            # will transform to dir/file on back transform.\n            #\n            # Yes, this is a BUG, as long as we permit \"/\" in\n            # filenames on Windows and \"\\\" on Unix\n            dir_info.trie[fi.relative_to(path_info).parts] = hi\n\n        return dir_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._download_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/base.py_BaseTree._download_file_", "embedding": null, "metadata": {"file_path": "dvc/tree/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 446, "end_line": 461, "span_ids": ["BaseTree._download_file"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseTree:\n\n    def _download_file(\n        self, from_info, to_info, name, no_progress_bar, file_mode, dir_mode\n    ):\n        makedirs(to_info.parent, exist_ok=True, mode=dir_mode)\n\n        logger.debug(\"Downloading '%s' to '%s'\", from_info, to_info)\n        name = name or to_info.name\n\n        tmp_file = tmp_fname(to_info)\n\n        self._download(  # noqa, pylint: disable=no-member\n            from_info, tmp_file, name=name, no_progress_bar=no_progress_bar\n        )\n\n        move(tmp_file, to_info, mode=file_mode)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.exists_DvcTree._add_dir.for_key_in_out_dir_cache_.trie_base_key_None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/dvc.py_DvcTree.exists_DvcTree._add_dir.for_key_in_out_dir_cache_.trie_base_key_None", "embedding": null, "metadata": {"file_path": "dvc/tree/dvc.py", "file_name": "dvc.py", "file_type": "text/x-python", "category": "implementation", "start_line": 109, "end_line": 167, "span_ids": ["DvcTree.exists", "DvcTree.isfile", "DvcTree.isdir", "DvcTree._fetch_dir", "DvcTree.check_isdir", "DvcTree._add_dir"], "tokens": 397}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcTree(BaseTree):\n\n    def exists(self, path):  # pylint: disable=arguments-differ\n        try:\n            self.metadata(path)\n            return True\n        except FileNotFoundError:\n            return False\n\n    def isdir(self, path):  # pylint: disable=arguments-differ\n        try:\n            meta = self.metadata(path)\n            return meta.isdir\n        except FileNotFoundError:\n            return False\n\n    def check_isdir(self, path_info, outs):\n        if len(outs) != 1:\n            return True\n\n        out = outs[0]\n        if not out.is_dir_checksum:\n            return out.path_info != path_info\n        if out.path_info == path_info:\n            return True\n\n        try:\n            self._get_granular_hash(path_info, out)\n            return False\n        except FileNotFoundError:\n            return True\n\n    def isfile(self, path):  # pylint: disable=arguments-differ\n        try:\n            meta = self.metadata(path)\n            return meta.isfile\n        except FileNotFoundError:\n            return False\n\n    def _fetch_dir(\n        self, out, filter_info=None, download_callback=None, **kwargs\n    ):\n        # pull dir cache if needed\n        out.get_dir_cache(**kwargs)\n\n        # pull dir contents if needed\n        if self.fetch and out.changed_cache(filter_info=filter_info):\n            used_cache = out.get_used_cache(filter_info=filter_info)\n            downloaded = self.repo.cloud.pull(used_cache, **kwargs)\n            if download_callback:\n                download_callback(downloaded)\n\n    def _add_dir(self, top, trie, out, **kwargs):\n        if not self.fetch and not self.stream:\n            return\n\n        self._fetch_dir(out, filter_info=top, **kwargs)\n\n        base = out.path_info.parts\n        for key in out.dir_cache.trie.iterkeys():  # noqa: B301\n            trie[base + key] = None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._group_HDFSTree.get_file_hash.return.hash_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._group_HDFSTree.get_file_hash.return.hash_info", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 210, "end_line": 230, "span_ids": ["HDFSTree._group", "HDFSTree.get_file_hash"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    @staticmethod\n    def _group(regex, s, gname):\n        match = re.match(regex, s)\n        assert match is not None\n        return match.group(gname)\n\n    def get_file_hash(self, path_info):\n        # NOTE: pyarrow doesn't support checksum, so we need to use hadoop\n        regex = r\".*\\t.*\\t(?P<checksum>.*)\"\n        stdout = self.hadoop_fs(\n            f\"checksum {path_info.url}\", user=path_info.user\n        )\n        hash_info = HashInfo(\n            self.PARAM_CHECKSUM, self._group(regex, stdout, \"checksum\"),\n        )\n\n        with self.hdfs(path_info) as hdfs:\n            file_info = hdfs.get_file_info(path_info.path)\n            hash_info.size = file_info.size\n\n        return hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.is_hardlink_LocalTree.chmod.try_.except_OSError_as_exc_.if_actual_mode_.raise": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree.is_hardlink_LocalTree.chmod.try_.except_OSError_as_exc_.if_actual_mode_.raise", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 227, "end_line": 254, "span_ids": ["LocalTree.chmod", "LocalTree.is_hardlink", "LocalTree.reflink"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    @staticmethod\n    def is_hardlink(path_info):\n        return System.is_hardlink(path_info)\n\n    def reflink(self, from_info, to_info):\n        tmp_info = to_info.parent / tmp_fname(to_info.name)\n        System.reflink(from_info, tmp_info)\n        # NOTE: reflink has its own separate inode, so you can set permissions\n        # that are different from the source.\n        os.chmod(tmp_info, self.file_mode)\n        os.rename(tmp_info, to_info)\n\n    def chmod(self, path_info, mode):\n        try:\n            os.chmod(path_info, mode)\n        except OSError as exc:\n            # There is nothing we need to do in case of a read-only file system\n            if exc.errno == errno.EROFS:\n                return\n\n            # In shared cache scenario, we might not own the cache file, so we\n            # need to check if cache file is already protected.\n            if exc.errno not in [errno.EPERM, errno.EACCES]:\n                raise\n\n            actual = stat.S_IMODE(os.stat(path_info).st_mode)\n            if actual != mode:\n                raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree._unprotect_file_LocalTree._unprotect_file.os_chmod_path_self_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree._unprotect_file_LocalTree._unprotect_file.os_chmod_path_self_file_", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 256, "end_line": 277, "span_ids": ["LocalTree._unprotect_file"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    def _unprotect_file(self, path):\n        if System.is_symlink(path) or System.is_hardlink(path):\n            logger.debug(\"Unprotecting '%s'\", path)\n            tmp = os.path.join(os.path.dirname(path), \".\" + uuid())\n\n            # The operations order is important here - if some application\n            # would access the file during the process of copyfile then it\n            # would get only the part of file. So, at first, the file should be\n            # copied with the temporary name, and then original file should be\n            # replaced by new.\n            copyfile(path, tmp, name=\"Unprotecting '{}'\".format(relpath(path)))\n            remove(path)\n            os.rename(tmp, path)\n\n        else:\n            logger.debug(\n                \"Skipping copying for '%s', since it is not \"\n                \"a symlink or a hardlink.\",\n                path,\n            )\n\n        os.chmod(path, self.file_mode)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree._unprotect_dir_LocalTree.getsize.return.os_path_getsize_path_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree._unprotect_dir_LocalTree.getsize.return.os_path_getsize_path_info", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 279, "end_line": 315, "span_ids": ["LocalTree.is_protected", "LocalTree.get_file_hash", "LocalTree.protect", "LocalTree.unprotect", "LocalTree._unprotect_dir", "LocalTree.getsize"], "tokens": 241}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    def _unprotect_dir(self, path):\n        for fname in self.walk_files(path):\n            self._unprotect_file(fname)\n\n    def unprotect(self, path_info):\n        if not os.path.exists(path_info):\n            raise DvcException(\n                f\"can't unprotect non-existing data '{path_info}'\"\n            )\n\n        if os.path.isdir(path_info):\n            self._unprotect_dir(path_info)\n        else:\n            self._unprotect_file(path_info)\n\n    def protect(self, path_info):\n        self.chmod(path_info, self.CACHE_MODE)\n\n    def is_protected(self, path_info):\n        try:\n            mode = os.stat(path_info).st_mode\n        except FileNotFoundError:\n            return False\n\n        return stat.S_IMODE(mode) == self.CACHE_MODE\n\n    def get_file_hash(self, path_info):\n        hash_info = HashInfo(self.PARAM_CHECKSUM, file_md5(path_info)[0],)\n\n        if hash_info:\n            hash_info.size = os.path.getsize(path_info)\n\n        return hash_info\n\n    @staticmethod\n    def getsize(path_info):\n        return os.path.getsize(path_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree._upload_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/local.py_LocalTree._upload_", "embedding": null, "metadata": {"file_path": "dvc/tree/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 323, "end_line": 355, "span_ids": ["LocalTree._download", "LocalTree._reset", "LocalTree._upload"], "tokens": 197}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LocalTree(BaseTree):\n\n    def _upload(\n        self,\n        from_file,\n        to_info,\n        name=None,\n        no_progress_bar=False,\n        file_mode=None,\n        **_kwargs,\n    ):\n        makedirs(to_info.parent, exist_ok=True)\n\n        tmp_file = tmp_fname(to_info)\n        copyfile(\n            from_file, tmp_file, name=name, no_progress_bar=no_progress_bar\n        )\n\n        if file_mode is not None:\n            self.chmod(tmp_file, file_mode)\n        else:\n            self.protect(tmp_file)\n        os.replace(tmp_file, to_info)\n\n    @staticmethod\n    def _download(\n        from_info, to_file, name=None, no_progress_bar=False, **_kwargs\n    ):\n        copyfile(\n            from_info, to_file, no_progress_bar=no_progress_bar, name=name\n        )\n\n    def _reset(self):\n        return self.__dict__.pop(\"dvcignore\", None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_logging_RepoFactory.Union_Callable_str_Re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/repo.py_logging_RepoFactory.Union_Callable_str_Re", "embedding": null, "metadata": {"file_path": "dvc/tree/repo.py", "file_name": "repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 27, "span_ids": ["imports"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport stat\nimport threading\nfrom contextlib import suppress\nfrom itertools import takewhile\nfrom typing import TYPE_CHECKING, Callable, Optional, Tuple, Type, Union\n\nfrom funcy import lfilter, wrap_with\n\nfrom dvc.dvcfile import is_valid_filename\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PathInfo\nfrom dvc.utils import file_md5, is_exec\nfrom dvc.utils.collections import PathStringTrie\nfrom dvc.utils.fs import copy_fobj_to_file, makedirs\n\nfrom ._metadata import Metadata\nfrom .base import BaseTree\nfrom .dvc import DvcTree\n\nif TYPE_CHECKING:\n    from dvc.repo import Repo\n\nlogger = logging.getLogger(__name__)\n\nRepoFactory = Union[Callable[[str], \"Repo\"], Type[\"Repo\"]]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_logging_update_pbar.return.update": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_logging_update_pbar.return.update", "embedding": null, "metadata": {"file_path": "dvc/tree/webhdfs.py", "file_name": "webhdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 28, "span_ids": ["imports", "update_pbar"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport threading\nfrom contextlib import contextmanager\nfrom urllib.parse import urlparse\n\nfrom funcy import cached_property, wrap_prop\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import CloudURLInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scheme import Schemes\n\nfrom .base import BaseTree\n\nlogger = logging.getLogger(__name__)\n\n\ndef update_pbar(pbar, total):\n    \"\"\"Update pbar to accept the two arguments passed by hdfs\"\"\"\n\n    def update(_, bytes_transfered):\n        if bytes_transfered == -1:\n            pbar.update_to(total)\n            return\n        pbar.update_to(bytes_transfered)\n\n    return update", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_WebHDFSTree_WebHDFSTree.__init__.self.alias.config_get_webhdfs_alias": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_WebHDFSTree_WebHDFSTree.__init__.self.alias.config_get_webhdfs_alias", "embedding": null, "metadata": {"file_path": "dvc/tree/webhdfs.py", "file_name": "webhdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 31, "end_line": 58, "span_ids": ["WebHDFSTree.__init__", "WebHDFSTree"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebHDFSTree(BaseTree):\n    scheme = Schemes.WEBHDFS\n    PATH_CLS = CloudURLInfo\n    REQUIRES = {\"hdfs\": \"hdfs\"}\n    PARAM_CHECKSUM = \"checksum\"\n\n    def __init__(self, repo, config):\n        super().__init__(repo, config)\n\n        self.path_info = None\n        url = config.get(\"url\")\n        if not url:\n            return\n\n        parsed = urlparse(url)\n        user = parsed.username or config.get(\"user\")\n\n        self.path_info = self.PATH_CLS.from_parts(\n            scheme=\"webhdfs\",\n            host=parsed.hostname,\n            user=user,\n            port=parsed.port,\n            path=parsed.path,\n        )\n\n        self.hdfscli_config = config.get(\"hdfscli_config\")\n        self.token = config.get(\"webhdfs_token\")\n        self.alias = config.get(\"webhdfs_alias\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_WebHDFSTree.hdfs_client_WebHDFSTree.hdfs_client.return.client": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_WebHDFSTree.hdfs_client_WebHDFSTree.hdfs_client.return.client", "embedding": null, "metadata": {"file_path": "dvc/tree/webhdfs.py", "file_name": "webhdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 60, "end_line": 91, "span_ids": ["WebHDFSTree.hdfs_client"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebHDFSTree(BaseTree):\n\n    @wrap_prop(threading.Lock())\n    @cached_property\n    def hdfs_client(self):\n        import hdfs\n\n        logger.debug(\"URL: %s\", self.path_info)\n        logger.debug(\"HDFSConfig: %s\", self.hdfscli_config)\n\n        try:\n            return hdfs.config.Config(self.hdfscli_config).get_client(\n                self.alias\n            )\n        except hdfs.util.HdfsError as exc:\n            exc_msg = str(exc)\n            errors = (\n                \"No alias specified\",\n                \"Invalid configuration file\",\n                f\"Alias {self.alias} not found\",\n            )\n            if not any(err in exc_msg for err in errors):\n                raise\n\n            http_url = f\"http://{self.path_info.host}:{self.path_info.port}\"\n\n            if self.token is not None:\n                client = hdfs.TokenClient(http_url, token=self.token, root=\"/\")\n            else:\n                client = hdfs.InsecureClient(\n                    http_url, user=self.path_info.user, root=\"/\"\n                )\n\n        return client", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_WebHDFSTree.open_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/webhdfs.py_WebHDFSTree.open_", "embedding": null, "metadata": {"file_path": "dvc/tree/webhdfs.py", "file_name": "webhdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 93, "end_line": 165, "span_ids": ["WebHDFSTree.walk_files", "WebHDFSTree.open", "WebHDFSTree.get_file_hash", "WebHDFSTree.move", "WebHDFSTree._upload", "WebHDFSTree.copy", "WebHDFSTree.remove", "WebHDFSTree.exists", "WebHDFSTree._download"], "tokens": 568}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebHDFSTree(BaseTree):\n\n    @contextmanager\n    def open(self, path_info, mode=\"r\", encoding=None):\n        assert mode in {\"r\", \"rt\", \"rb\"}\n\n        with self.hdfs_client.read(\n            path_info.path, encoding=encoding\n        ) as reader:\n            yield reader.read()\n\n    def walk_files(self, path_info, **kwargs):\n        if not self.exists(path_info):\n            return\n\n        root = path_info.path\n        for path, _, files in self.hdfs_client.walk(root):\n            for file_ in files:\n                path = os.path.join(path, file_)\n                yield path_info.replace(path=path)\n\n    def remove(self, path_info):\n        if path_info.scheme != self.scheme:\n            raise NotImplementedError\n\n        self.hdfs_client.delete(path_info.path)\n\n    def exists(self, path_info, use_dvcignore=True):\n        assert not isinstance(path_info, list)\n        assert path_info.scheme == \"webhdfs\"\n\n        status = self.hdfs_client.status(path_info.path, strict=False)\n        return status is not None\n\n    def get_file_hash(self, path_info):\n        checksum = self.hdfs_client.checksum(path_info.path)\n        hash_info = HashInfo(self.PARAM_CHECKSUM, checksum[\"bytes\"])\n\n        hash_info.size = self.hdfs_client.status(path_info.path)[\"length\"]\n        return hash_info\n\n    def copy(self, from_info, to_info, **_kwargs):\n        with self.hdfs_client.read(from_info.path) as reader:\n            content = reader.read()\n        self.hdfs_client.write(to_info.path, data=content)\n\n    def move(self, from_info, to_info, mode=None):\n        self.hdfs_client.makedirs(to_info.parent.path)\n        self.hdfs_client.rename(from_info.path, to_info.path)\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        total = os.path.getsize(from_file)\n        with Tqdm(\n            desc=name, total=total, disable=no_progress_bar, bytes=True\n        ) as pbar:\n            self.hdfs_client.upload(\n                to_info.path,\n                from_file,\n                overwrite=True,\n                progress=update_pbar(pbar, total),\n            )\n\n    def _download(\n        self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs\n    ):\n        total = self.hdfs_client.status(from_info.path)[\"length\"]\n        with Tqdm(\n            desc=name, total=total, disable=no_progress_bar, bytes=True\n        ) as pbar:\n            self.hdfs_client.download(\n                from_info.path, to_file, progress=update_pbar(pbar, total)\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/types.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/types.py__", "embedding": null, "metadata": {"file_path": "dvc/types.py", "file_name": "types.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 13, "span_ids": ["imports"], "tokens": 78}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from typing import TYPE_CHECKING, Optional, Union\n\nfrom dvc.path_info import PathInfo, URLInfo\n\nif TYPE_CHECKING:\n    from os import PathLike\n\nStrPath = Union[str, \"PathLike[str]\"]\nDvcPath = Union[PathInfo, URLInfo]\nAnyPath = Union[str, DvcPath, StrPath]\n\nOptStr = Optional[str]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_tmp_fname_colorize.return._style_color_message_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_tmp_fname_colorize.return._style_color_message_", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 230, "end_line": 262, "span_ids": ["current_timestamp", "tmp_fname", "colorize"], "tokens": 198}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def tmp_fname(fname):\n    \"\"\" Temporary name for a partial download \"\"\"\n    return os.fspath(fname) + \".\" + uuid() + \".tmp\"\n\n\ndef current_timestamp():\n    return int(nanotime.timestamp(time.time()))\n\n\ndef colorize(message, color=None, style=None):\n    \"\"\"Returns a message in a specified color.\"\"\"\n    if not color:\n        return message\n\n    styles = {\n        \"dim\": colorama.Style.DIM,\n        \"bold\": colorama.Style.BRIGHT,\n    }\n\n    colors = {\n        \"green\": colorama.Fore.GREEN,\n        \"yellow\": colorama.Fore.YELLOW,\n        \"blue\": colorama.Fore.BLUE,\n        \"red\": colorama.Fore.RED,\n        \"magenta\": colorama.Fore.MAGENTA,\n    }\n\n    return \"{style}{color}{message}{reset}\".format(\n        style=styles.get(style, \"\"),\n        color=colors.get(color, \"\"),\n        message=message,\n        reset=colorama.Style.RESET_ALL,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_install_requires_ssh_gssapi._paramiko_invoke_gssapi_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_install_requires_ssh_gssapi._paramiko_invoke_gssapi_", "embedding": null, "metadata": {"file_path": "setup.py", "file_name": "setup.py", "file_type": "text/x-python", "category": "implementation", "start_line": 48, "end_line": 110, "span_ids": ["impl:15", "impl:17"], "tokens": 786}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "install_requires = [\n    \"ply>=3.9\",  # See https://github.com/pyinstaller/pyinstaller/issues/1945\n    \"colorama>=0.3.9\",\n    \"configobj>=5.0.6\",\n    \"gitpython>3\",\n    \"dulwich>=0.20.15\",\n    \"pygit2>=1.4.0\",\n    \"setuptools>=34.0.0\",\n    \"nanotime>=0.5.2\",\n    \"pyasn1>=0.4.1\",\n    \"voluptuous>=0.11.7\",\n    \"jsonpath-ng>=1.5.1\",\n    \"requests>=2.22.0\",\n    \"grandalf==0.6\",\n    \"distro>=1.3.0\",\n    \"appdirs>=1.4.3\",\n    \"ruamel.yaml>=0.16.1\",\n    \"toml>=0.10.1\",\n    \"funcy>=1.14\",\n    \"pathspec>=0.6.0\",\n    \"shortuuid>=0.5.0\",\n    \"tqdm>=4.45.0,<5\",\n    \"packaging>=19.0\",\n    \"zc.lockfile>=1.2.1\",\n    \"flufl.lock>=3.2,<4\",\n    \"win-unicode-console>=0.5; sys_platform == 'win32'\",\n    \"pywin32>=225; sys_platform == 'win32'\",\n    \"networkx>=2.1\",\n    \"pydot>=1.2.4\",\n    \"speedcopy>=2.0.1; python_version < '3.8' and sys_platform == 'win32'\",\n    \"dataclasses==0.7; python_version < '3.7'\",\n    \"flatten_dict>=0.3.0,<1\",\n    \"tabulate>=0.8.7\",\n    \"pygtrie==2.3.2\",\n    \"dpath>=2.0.1,<3\",\n    \"shtab>=1.3.2,<2\",\n    \"rich>=3.0.5\",\n    \"dictdiffer>=0.8.1\",\n    \"python-benedict>=0.21.1\",\n    \"pyparsing==2.4.7\",\n    \"typing_extensions>=3.7.4\",\n]\n\n\n# Extra dependencies for remote integrations\n\ngs = [\"google-cloud-storage==1.19.0\"]\ngdrive = [\"pydrive2>=1.6.3\", \"six >= 1.13.0\"]\ns3 = [\"boto3>=1.9.201\"]\nazure = [\"azure-storage-blob>=12.0\", \"knack\"]\n# https://github.com/Legrandin/pycryptodome/issues/465\noss = [\"oss2==2.6.1\", \"pycryptodome<3.9.9\"]\nssh = [\"paramiko[invoke]>=2.7.0\"]\n\n# Remove the env marker if/when pyarrow is available for Python3.9\nhdfs = [\"pyarrow>=2.0.0;  python_version < '3.9'\"]\nwebhdfs = [\"hdfs==2.5.8\"]\nwebdav = [\"webdavclient3>=3.14.5\"]\n# gssapi should not be included in all_remotes, because it doesn't have wheels\n# for linux and mac, so it will fail to compile if user doesn't have all the\n# requirements, including kerberos itself. Once all the wheels are available,\n# we can start shipping it by default.\nssh_gssapi = [\"paramiko[invoke,gssapi]>=2.7.0\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_all_remotes_tests_requirements._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_all_remotes_tests_requirements._", "embedding": null, "metadata": {"file_path": "setup.py", "file_name": "setup.py", "file_type": "text/x-python", "category": "implementation", "start_line": 110, "end_line": 152, "span_ids": ["impl:17"], "tokens": 446}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "all_remotes = gs + s3 + azure + ssh + oss + gdrive + hdfs + webhdfs + webdav\n\n# Extra dependecies to run tests\ntests_requirements = [\n    \"wheel>=0.31.1\",\n    # Test requirements:\n    \"pytest>=6.0.1\",\n    \"pytest-cov\",\n    \"pytest-docker>=0.7.2\",\n    \"pytest-timeout>=1.3.3\",\n    \"pytest-cov>=2.6.1\",\n    \"pytest-xdist>=1.26.1\",\n    \"pytest-mock==1.11.2\",\n    \"pytest-lazy-fixture\",\n    \"pytest-tap\",\n    \"flaky>=3.5.3\",\n    \"mock>=3.0.0\",\n    \"xmltodict>=0.11.0\",\n    \"awscli>=1.16.297\",\n    \"google-compute-engine==2.8.13\",\n    \"Pygments\",  # required by collective.checkdocs,\n    \"collective.checkdocs\",\n    \"psutil\",\n    \"pydocstyle<4.0\",\n    \"jaraco.windows==3.9.2\",\n    \"mock-ssh-server>=0.8.2\",\n    \"moto==1.3.16.dev122\",\n    # moto's indirect dependency that is causing problems with flufl.lock's\n    # dependency (atpublic). See https://github.com/iterative/dvc/pull/4853\n    \"aws-sam-translator<1.29.0\",\n    # for moto's indirect dependency.\n    # See https://github.com/iterative/dvc/pull/4879\n    \"urllib3<1.26.0\",\n    \"rangehttpserver==1.2.0\",\n    \"beautifulsoup4==4.4.0\",\n    \"pylint==2.5.3\",\n    \"pylint-pytest>=0.3.0\",\n    \"pylint-plugin-utils\",\n    \"wget\",\n    \"filelock\",\n    \"mypy\",\n    \"wsgidav\",\n]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_setup__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/setup.py_setup__", "embedding": null, "metadata": {"file_path": "setup.py", "file_name": "setup.py", "file_type": "text/x-python", "category": "implementation", "start_line": 160, "end_line": 201, "span_ids": ["impl:41"], "tokens": 351}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "setup(\n    name=\"dvc\",\n    version=version,\n    description=\"Git for data scientists - manage your code and data together\",\n    long_description=open(\"README.rst\", \"r\", encoding=\"UTF-8\").read(),\n    author=\"Dmitry Petrov\",\n    author_email=\"dmitry@dvc.org\",\n    download_url=\"https://github.com/iterative/dvc\",\n    license=\"Apache License 2.0\",\n    install_requires=install_requires,\n    extras_require={\n        \"all\": all_remotes,\n        \"gs\": gs,\n        \"gdrive\": gdrive,\n        \"s3\": s3,\n        \"azure\": azure,\n        \"oss\": oss,\n        \"ssh\": ssh,\n        \"ssh_gssapi\": ssh_gssapi,\n        \"hdfs\": hdfs,\n        \"webhdfs\": webhdfs,\n        \"webdav\": webdav,\n        \"tests\": tests_requirements,\n    },\n    keywords=\"data-science data-version-control machine-learning git\"\n    \" developer-tools reproducibility collaboration ai\",\n    python_requires=\">=3.6\",\n    classifiers=[\n        \"Development Status :: 4 - Beta\",\n        \"Programming Language :: Python :: 3\",\n        \"Programming Language :: Python :: 3.6\",\n        \"Programming Language :: Python :: 3.7\",\n        \"Programming Language :: Python :: 3.8\",\n    ],\n    packages=find_packages(exclude=[\"tests\"]),\n    include_package_data=True,\n    url=\"http://dvc.org\",\n    entry_points={\"console_scripts\": [\"dvc = dvc.main:main\"]},\n    cmdclass={\"build_py\": build_py},\n    zip_safe=False,\n)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_os__get_opt.return.f_action_remote_name": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_os__get_opt.return.f_action_remote_name", "embedding": null, "metadata": {"file_path": "tests/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["reset_loglevel", "imports", "_close_pools", "_get_opt"], "tokens": 336}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom contextlib import suppress\n\nimport pytest\n\nfrom .dir_helpers import *  # noqa, pylint: disable=wildcard-import\nfrom .remotes import *  # noqa, pylint: disable=wildcard-import\n\n# Prevent updater and analytics from running their processes\nos.environ[\"DVC_TEST\"] = \"true\"\n# Ensure progress output even when not outputting to raw sys.stderr console\nos.environ[\"DVC_IGNORE_ISATTY\"] = \"true\"\n\nREMOTES = {\n    # remote: enabled_by_default?\n    \"azure\": False,\n    \"gdrive\": False,\n    \"gs\": False,\n    \"hdfs\": False,\n    \"http\": True,\n    \"oss\": False,\n    \"s3\": True,\n    \"ssh\": True,\n    \"webdav\": True,\n}\n\n\n@pytest.fixture(autouse=True)\ndef reset_loglevel(request, caplog):\n    \"\"\"\n    Use it to ensure log level at the start of each test\n    regardless of dvc.logger.setup(), Repo configs or whatever.\n    \"\"\"\n    ini_opt = None\n    with suppress(ValueError):\n        ini_opt = request.config.getini(\"log_level\")\n\n    level = request.config.getoption(\"--log-level\") or ini_opt\n    if level:\n        with caplog.at_level(level.upper(), logger=\"dvc\"):\n            yield\n    else:\n        yield\n\n\n@pytest.fixture(scope=\"session\", autouse=True)\ndef _close_pools():\n    from dvc.tree.pool import close_pools\n\n    yield\n    close_pools()\n\n\ndef _get_opt(remote_name, action):\n    return f\"--{action}-{remote_name}\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_pytest_addoption_pytest_addoption.for_remote_name_in_REMOTE.for_action_in_enable_.parser_addoption_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_pytest_addoption_pytest_addoption.for_remote_name_in_REMOTE.for_action_in_enable_.parser_addoption_", "embedding": null, "metadata": {"file_path": "tests/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 58, "end_line": 82, "span_ids": ["pytest_addoption"], "tokens": 228}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def pytest_addoption(parser):\n    \"\"\"Adds remote-related flags to selectively disable/enable for tests\n    Eg: If some remotes, eg: ssh is enabled to be tested for by default\n    (see above `REMOTES`), then, `--disable-ssh` flag is added. If remotes\n    like `hdfs` are disabled by default, `--enable-hdfs` is added to make them\n    run.\n\n    You can also make everything run-by-default with `--all` flag, which takes\n    precedence on all previous `--enable-*`/`--disable-*` flags.\n    \"\"\"\n    parser.addoption(\n        \"--all\",\n        action=\"store_true\",\n        default=False,\n        help=\"Test all of the remotes, unless other flags also supplied\",\n    )\n    for remote_name in REMOTES:\n        for action in (\"enable\", \"disable\"):\n            opt = _get_opt(remote_name, action)\n            parser.addoption(\n                opt,\n                action=\"store_true\",\n                default=None,\n                help=f\"{action} tests for {remote_name}\",\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_DVCTestConfig_test_config.return.request_config_dvc_config": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_DVCTestConfig_test_config.return.request_config_dvc_config", "embedding": null, "metadata": {"file_path": "tests/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 85, "end_line": 110, "span_ids": ["DVCTestConfig.requires", "DVCTestConfig.__init__", "pytest_runtest_setup", "test_config", "DVCTestConfig.apply_marker", "DVCTestConfig"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DVCTestConfig:\n    def __init__(self):\n        self.enabled_remotes = set()\n\n    def requires(self, remote_name):\n        if remote_name not in REMOTES or remote_name in self.enabled_remotes:\n            return\n\n        pytest.skip(f\"{remote_name} tests not enabled through CLI\")\n\n    def apply_marker(self, marker):\n        self.requires(marker.name)\n\n\ndef pytest_runtest_setup(item):\n    # Apply test markers to skip tests selectively\n    # NOTE: this only works on individual tests,\n    # for fixture, use `test_config` fixture and\n    # run `test_config.requires(remote_name)`.\n    for marker in item.iter_markers():\n        item.config.dvc_config.apply_marker(marker)\n\n\n@pytest.fixture(scope=\"session\")\ndef test_config(request):\n    return request.config.dvc_config", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_pytest_configure_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/conftest.py_pytest_configure_", "embedding": null, "metadata": {"file_path": "tests/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 113, "end_line": 141, "span_ids": ["pytest_configure"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def pytest_configure(config):\n    config.dvc_config = DVCTestConfig()\n\n    for remote_name in REMOTES:\n        config.addinivalue_line(\n            \"markers\", f\"{remote_name}: mark test as requiring {remote_name}\"\n        )\n\n    enabled_remotes = config.dvc_config.enabled_remotes\n    if config.getoption(\"--all\"):\n        enabled_remotes.update(REMOTES)\n    else:\n        default_enabled = {k for k, v in REMOTES.items() if v}\n        enabled_remotes.update(default_enabled)\n\n    for remote_name in REMOTES:\n        enabled_opt = _get_opt(remote_name, \"enable\")\n        disabled_opt = _get_opt(remote_name, \"disable\")\n\n        enabled = config.getoption(enabled_opt)\n        disabled = config.getoption(disabled_opt)\n        if disabled and enabled:\n            continue  # default behavior if both flags are supplied\n\n        if disabled:\n            enabled_remotes.discard(remote_name)\n        if enabled:\n            enabled_remotes.add(remote_name)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/conftest.py_from_textwrap_import_dede_CHECKPOINT_SCRIPT.CHECKPOINT_SCRIPT_FORMAT_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/conftest.py_from_textwrap_import_dede_CHECKPOINT_SCRIPT.CHECKPOINT_SCRIPT_FORMAT_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 41, "span_ids": ["imports"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from textwrap import dedent\n\nimport pytest\n\nfrom tests.func.test_repro_multistage import COPY_SCRIPT\n\nCHECKPOINT_SCRIPT_FORMAT = dedent(\n    \"\"\"\\\n    import os\n    import sys\n    import shutil\n    from time import sleep\n\n    from dvc.api import make_checkpoint\n\n    checkpoint_file = {}\n    checkpoint_iterations = int({})\n    if os.path.exists(checkpoint_file):\n        with open(checkpoint_file) as fobj:\n            try:\n                value = int(fobj.read())\n            except ValueError:\n                value = 0\n    else:\n        with open(checkpoint_file, \"w\"):\n            pass\n        value = 0\n\n    shutil.copyfile({}, {})\n\n    if os.getenv(\"DVC_CHECKPOINT\"):\n        for _ in range(checkpoint_iterations):\n            value += 1\n            with open(checkpoint_file, \"w\") as fobj:\n                fobj.write(str(value))\n            make_checkpoint()\n\"\"\"\n)\nCHECKPOINT_SCRIPT = CHECKPOINT_SCRIPT_FORMAT.format(\n    \"sys.argv[1]\", \"sys.argv[2]\", \"sys.argv[3]\", \"sys.argv[4]\"\n)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/conftest.py_exp_stage_exp_stage.return.stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/conftest.py_exp_stage_exp_stage.return.stage", "embedding": null, "metadata": {"file_path": "tests/func/experiments/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 44, "end_line": 66, "span_ids": ["exp_stage"], "tokens": 135}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef exp_stage(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        name=\"copy-file\",\n        deps=[\"copy.py\"],\n    )\n    scm.add(\n        [\n            \"dvc.yaml\",\n            \"dvc.lock\",\n            \"copy.py\",\n            \"params.yaml\",\n            \"metrics.yaml\",\n            \".gitignore\",\n        ]\n    )\n    scm.commit(\"init\")\n    return stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/conftest.py_checkpoint_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/conftest.py_checkpoint_stage_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 69, "end_line": 85, "span_ids": ["checkpoint_stage"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef checkpoint_stage(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"checkpoint.py\", CHECKPOINT_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n    stage = dvc.run(\n        cmd=\"python checkpoint.py foo 5 params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        checkpoints=[\"foo\"],\n        deps=[\"checkpoint.py\"],\n        no_exec=True,\n        name=\"checkpoint-file\",\n    )\n    scm.add([\"dvc.yaml\", \"checkpoint.py\", \"params.yaml\", \".gitignore\"])\n    scm.commit(\"init\")\n    return stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_test_resume_branch_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_test_resume_branch_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_checkpoints.py", "file_name": "test_checkpoints.py", "file_type": "text/x-python", "category": "test", "start_line": 153, "end_line": 212, "span_ids": ["test_resume_branch"], "tokens": 457}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_resume_branch(tmp_dir, scm, dvc, checkpoint_stage, workspace):\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    branch_rev = first(results)\n    if not workspace:\n        dvc.experiments.apply(branch_rev)\n\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing,\n        checkpoint_resume=branch_rev,\n        tmp_dir=not workspace,\n    )\n    checkpoint_a = first(results)\n    if not workspace:\n        dvc.experiments.apply(checkpoint_a, force=True)\n\n    with pytest.raises(DvcException):\n        results = dvc.experiments.run(\n            checkpoint_stage.addressing,\n            checkpoint_resume=branch_rev,\n            params=[\"foo=100\"],\n            tmp_dir=not workspace,\n        )\n\n    dvc.experiments.apply(branch_rev, force=True)\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing,\n        checkpoint_resume=branch_rev,\n        params=[\"foo=100\"],\n        tmp_dir=not workspace,\n    )\n    checkpoint_b = first(results)\n\n    for rev in dvc.brancher([checkpoint_a]):\n        if rev == \"workspace\":\n            continue\n        tree = dvc.repo_tree\n        with tree.open(tmp_dir / \"foo\") as fobj:\n            assert fobj.read().strip() == \"10\"\n        with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n            assert fobj.read().strip() == \"foo: 2\"\n\n    for rev in dvc.brancher([checkpoint_b]):\n        if rev == \"workspace\":\n            continue\n        tree = dvc.repo_tree\n        with tree.open(tmp_dir / \"foo\") as fobj:\n            assert fobj.read().strip() == \"10\"\n        with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n            assert fobj.read().strip() == \"foo: 100\"\n\n    with pytest.raises(MultipleBranchError):\n        dvc.experiments.get_branch_by_rev(branch_rev)\n\n    assert branch_rev == dvc.experiments.scm.gitpython.repo.git.merge_base(\n        checkpoint_a, checkpoint_b\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_file_permissions_test_file_permissions.assert_stat_S_IMODE_os_st": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_file_permissions_test_file_permissions.assert_stat_S_IMODE_os_st", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 24, "end_line": 33, "span_ids": ["test_file_permissions"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(os.name == \"nt\", reason=\"Not supported for Windows.\")\ndef test_file_permissions(tmp_dir, scm, dvc, exp_stage, mocker):\n    mode = 0o755\n    os.chmod(tmp_dir / \"copy.py\", mode)\n    scm.add([\"copy.py\"])\n    scm.commit(\"set exec\")\n\n    tmp_dir.gen(\"params.yaml\", \"foo: 2\")\n    dvc.experiments.run(exp_stage.addressing)\n    assert stat.S_IMODE(os.stat(tmp_dir / \"copy.py\").st_mode) == mode", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_failed_exp_test_failed_exp.with_caplog_at_level_logg.assert_Failed_to_reprodu": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_failed_exp_test_failed_exp.with_caplog_at_level_logg.assert_Failed_to_reprodu", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 88, "end_line": 99, "span_ids": ["test_failed_exp"], "tokens": 107}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_failed_exp(tmp_dir, scm, dvc, exp_stage, mocker, caplog):\n    from dvc.exceptions import ReproductionError\n\n    tmp_dir.gen(\"params.yaml\", \"foo: 2\")\n\n    mocker.patch(\n        \"concurrent.futures.Future.exception\",\n        return_value=ReproductionError(exp_stage.relpath),\n    )\n    with caplog.at_level(logging.ERROR):\n        dvc.experiments.run(exp_stage.addressing, tmp_dir=True)\n        assert \"Failed to reproduce experiment\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_pytest_test_workspace.assert_removed_expecte": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_pytest_test_workspace.assert_removed_expecte", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["imports", "test_workspace"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\nfrom funcy import first\n\nfrom tests.func.test_repro_multistage import COPY_SCRIPT\n\n\n@pytest.mark.parametrize(\"queued, expected\", [(True, 0), (False, 1)])\ndef test_workspace(tmp_dir, scm, dvc, queued, expected):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        name=\"foo\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v1\")\n\n    dvc.experiments.run(stage.addressing, params=[\"foo=2\"])\n    dvc.experiments.run(stage.addressing, params=[\"foo=3\"], queue=True)\n\n    removed = dvc.experiments.gc(workspace=True, queued=queued)\n    assert removed == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_test_all_commits_test_all_commits.assert_removed_expecte": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_test_all_commits_test_all_commits.assert_removed_expecte", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 28, "end_line": 54, "span_ids": ["test_all_commits"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"queued, expected\", [(True, 0), (False, 2)])\ndef test_all_commits(tmp_dir, scm, dvc, queued, expected):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        name=\"foo\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v1\")\n\n    results = dvc.experiments.run(stage.addressing, params=[\"foo=2\"])\n    exp_rev = first(results)\n    dvc.experiments.run(stage.addressing, params=[\"foo=3\"], queue=True)\n\n    dvc.experiments.apply(exp_rev, force=True)\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v2\")\n\n    dvc.experiments.run(stage.addressing, params=[\"foo=4\"])\n    dvc.experiments.run(stage.addressing, params=[\"foo=5\"], queue=True)\n\n    removed = dvc.experiments.gc(all_commits=True, queued=queued)\n    assert removed == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_test_all_branches_test_all_branches.assert_removed_expecte": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_test_all_branches_test_all_branches.assert_removed_expecte", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 57, "end_line": 90, "span_ids": ["test_all_branches"], "tokens": 336}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"queued, expected\", [(True, 2), (False, 3)])\ndef test_all_branches(tmp_dir, scm, dvc, queued, expected):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        name=\"foo\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v1\")\n\n    results = dvc.experiments.run(stage.addressing, params=[\"foo=2\"])\n    exp_rev = first(results)\n    dvc.experiments.run(stage.addressing, params=[\"foo=3\"], queue=True)\n\n    dvc.experiments.apply(exp_rev, force=True)\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v2\")\n\n    scm.branch(\"branch\")\n\n    results = dvc.experiments.run(stage.addressing, params=[\"foo=4\"])\n    dvc.experiments.run(stage.addressing, params=[\"foo=5\"], queue=True)\n    exp_rev = first(results)\n\n    dvc.experiments.apply(exp_rev, force=True)\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v3\")\n\n    removed = dvc.experiments.gc(all_branches=True, queued=queued)\n    assert removed == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_test_all_tags_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_gc.py_test_all_tags_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 93, "end_line": 121, "span_ids": ["test_all_tags"], "tokens": 283}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"queued, expected\", [(True, 2), (False, 3)])\ndef test_all_tags(tmp_dir, scm, dvc, queued, expected):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        name=\"foo\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v1\")\n\n    results = dvc.experiments.run(stage.addressing, params=[\"foo=2\"])\n    exp_rev = first(results)\n    dvc.experiments.run(stage.addressing, params=[\"foo=3\"], queue=True)\n\n    dvc.experiments.apply(exp_rev, force=True)\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v2\")\n    scm.tag(\"tag-v2\")\n\n    dvc.experiments.run(stage.addressing, params=[\"foo=4\"])\n    dvc.experiments.run(stage.addressing, params=[\"foo=5\"], queue=True)\n\n    removed = dvc.experiments.gc(all_tags=True, queued=queued)\n    assert removed == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_queued_test_show_queued.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_queued_test_show_queued.None_5", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 54, "end_line": 81, "span_ids": ["test_show_queued"], "tokens": 271}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_queued(tmp_dir, scm, dvc, exp_stage):\n    from dvc.repo.experiments.base import EXPS_STASH\n\n    baseline_rev = scm.get_rev()\n\n    dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"], queue=True)\n    exp_rev = dvc.experiments.scm.resolve_rev(f\"{EXPS_STASH}@{{0}}\")\n\n    results = dvc.experiments.show()[baseline_rev]\n    assert len(results) == 2\n    exp = results[exp_rev]\n    assert exp[\"queued\"]\n    assert exp[\"params\"][\"params.yaml\"] == {\"foo\": 2}\n\n    # test that only queued experiments for the current baseline are returned\n    tmp_dir.gen(\"foo\", \"foo\")\n    scm.add([\"foo\"])\n    scm.commit(\"new commit\")\n    new_rev = scm.get_rev()\n\n    dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"], queue=True)\n    exp_rev = dvc.experiments.scm.resolve_rev(f\"{EXPS_STASH}@{{0}}\")\n\n    results = dvc.experiments.show()[new_rev]\n    assert len(results) == 2\n    exp = results[exp_rev]\n    assert exp[\"queued\"]\n    assert exp[\"params\"][\"params.yaml\"] == {\"foo\": 3}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_filtered_files_in_dir_test_add_filtered_files_in_dir.for_stage_in_stages_.assert_stage_outs_0_def_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_filtered_files_in_dir_test_add_filtered_files_in_dir.for_stage_in_stages_.assert_stage_outs_0_def_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 193, "end_line": 261, "span_ids": ["test_add_filtered_files_in_dir"], "tokens": 591}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"target, expected_def_paths, expected_rel_paths\",\n    [\n        (\n            os.path.join(\"dir\", \"subdir\", \"subdata*\"),\n            [\"subdata\", \"subdata123\"],\n            [\n                os.path.join(\"dir\", \"subdir\", \"subdata\") + \".dvc\",\n                os.path.join(\"dir\", \"subdir\", \"subdata123\") + \".dvc\",\n            ],\n        ),\n        (\n            os.path.join(\"dir\", \"subdir\", \"?subdata\"),\n            [\"esubdata\", \"isubdata\"],\n            [\n                os.path.join(\"dir\", \"subdir\", \"esubdata\") + \".dvc\",\n                os.path.join(\"dir\", \"subdir\", \"isubdata\") + \".dvc\",\n            ],\n        ),\n        (\n            os.path.join(\"dir\", \"subdir\", \"[aiou]subdata\"),\n            [\"isubdata\"],\n            [os.path.join(\"dir\", \"subdir\", \"isubdata\") + \".dvc\"],\n        ),\n        (\n            os.path.join(\"dir\", \"**\", \"subdata*\"),\n            [\"subdata\", \"subdata123\", \"subdata4\", \"subdata5\"],\n            [\n                os.path.join(\"dir\", \"subdir\", \"subdata\") + \".dvc\",\n                os.path.join(\"dir\", \"subdir\", \"subdata123\") + \".dvc\",\n                os.path.join(\"dir\", \"anotherdir\", \"subdata4\") + \".dvc\",\n                os.path.join(\"dir\", \"subdata5\") + \".dvc\",\n            ],\n        ),\n    ],\n)\ndef test_add_filtered_files_in_dir(\n    tmp_dir, dvc, target, expected_def_paths, expected_rel_paths\n):\n    tmp_dir.gen(\n        {\n            \"dir\": {\n                \"subdir\": {\n                    \"subdata\": \"subdata content\",\n                    \"esubdata\": \"extra subdata content\",\n                    \"isubdata\": \"i subdata content\",\n                    \"subdata123\": \"subdata content 123\",\n                },\n                \"anotherdir\": {\n                    \"subdata4\": \"subdata 4 content\",\n                    \"esubdata\": \"extra 2 subdata content\",\n                },\n                \"subdata5\": \"subdata 5 content\",\n            }\n        }\n    )\n\n    stages = dvc.add(target, glob=True)\n\n    assert len(stages) == len(expected_def_paths)\n    for stage in stages:\n        assert stage is not None\n        assert len(stage.deps) == 0\n        assert len(stage.outs) == 1\n        assert stage.relpath in expected_rel_paths\n\n        # Current dir should not be taken into account\n        assert stage.wdir == os.path.dirname(stage.path)\n        assert stage.outs[0].def_path in expected_def_paths", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestCacheLoadBadDirCache_TestCacheLoadBadDirCache.test.self_assertEqual_dir_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_TestCacheLoadBadDirCache_TestCacheLoadBadDirCache.test.self_assertEqual_dir_info", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 45, "end_line": 68, "span_ids": ["TestCacheLoadBadDirCache._do_test", "TestCacheLoadBadDirCache.test", "TestCacheLoadBadDirCache"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCacheLoadBadDirCache(TestDvc):\n    def _do_test(self, ret):\n        self.assertTrue(isinstance(ret, list))\n        self.assertEqual(len(ret), 0)\n\n    def test(self):\n        dir_hash = \"123.dir\"\n        fname = os.fspath(\n            self.dvc.cache.local.tree.hash_to_path_info(dir_hash)\n        )\n        self.create(fname, \"<clearly>not,json\")\n        with pytest.raises(DirCacheError):\n            self.dvc.cache.local.load_dir_cache(HashInfo(\"md5\", dir_hash))\n\n        dir_hash = \"234.dir\"\n        fname = os.fspath(\n            self.dvc.cache.local.tree.hash_to_path_info(dir_hash)\n        )\n        self.create(fname, '{\"a\": \"b\"}')\n        dir_info = self.dvc.cache.local.load_dir_cache(\n            HashInfo(\"md5\", dir_hash)\n        )\n        self.assertTrue(isinstance(dir_info, DirInfo))\n        self.assertEqual(dir_info.nfiles, 0)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_dump_preserves_desc_test_dvcfile_dump_preserves_desc.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_dump_preserves_desc_test_dvcfile_dump_preserves_desc.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 326, "end_line": 344, "span_ids": ["test_dvcfile_dump_preserves_desc"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dvcfile_dump_preserves_desc(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage_desc = \"test stage description\"\n    out_desc = \"test out description\"\n\n    stage = run_copy(\"foo\", \"bar\", name=\"run_copy\", desc=stage_desc)\n    dvcfile = stage.dvcfile\n\n    data = dvcfile._load()[0]\n    data[\"stages\"][\"run_copy\"][\"outs\"][0] = {\"bar\": {\"desc\": out_desc}}\n    dump_yaml(dvcfile.path, data)\n\n    assert stage.desc == stage_desc\n    stage.outs[0].desc = out_desc\n    dvcfile.dump(stage)\n    loaded = dvcfile._load()[0]\n    assert loaded == data\n    assert loaded[\"stages\"][\"run_copy\"][\"desc\"] == stage_desc\n    assert loaded[\"stages\"][\"run_copy\"][\"outs\"][0][\"bar\"][\"desc\"] == out_desc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_dump_preserves_comments_test_dvcfile_dump_preserves_comments.assert_dvcfile__load_1_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_dump_preserves_comments_test_dvcfile_dump_preserves_comments.assert_dvcfile__load_1_", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 347, "end_line": 363, "span_ids": ["test_dvcfile_dump_preserves_comments"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dvcfile_dump_preserves_comments(tmp_dir, dvc):\n    text = textwrap.dedent(\n        \"\"\"\\\n        stages:\n          generate-foo:\n            cmd: echo foo > foo\n            # This copies 'foo' text to 'foo' file.\n            outs:\n            - foo\"\"\"\n    )\n    tmp_dir.gen(\"dvc.yaml\", text)\n    stage = dvc.stage.load_one(name=\"generate-foo\")\n    stage.outs[0].use_cache = False\n    dvcfile = stage.dvcfile\n\n    dvcfile.dump(stage)\n    assert dvcfile._load()[1] == (text + \":\\n\\tcache: false\\n\".expandtabs())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_try_dumping_parametrized_stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_dvcfile.py_test_dvcfile_try_dumping_parametrized_stage_", "embedding": null, "metadata": {"file_path": "tests/func/test_dvcfile.py", "file_name": "test_dvcfile.py", "file_type": "text/x-python", "category": "test", "start_line": 366, "end_line": 386, "span_ids": ["test_dvcfile_try_dumping_parametrized_stage"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"data, name\",\n    [\n        ({\"build-us\": {\"cmd\": \"echo ${foo}\"}}, \"build-us\"),\n        (\n            {\"build\": {\"foreach\": [\"us\", \"gb\"], \"do\": {\"cmd\": \"echo ${foo}\"}}},\n            \"build@us\",\n        ),\n    ],\n)\ndef test_dvcfile_try_dumping_parametrized_stage(tmp_dir, dvc, data, name):\n    dump_yaml(\"dvc.yaml\", {\"stages\": data, \"vars\": [{\"foo\": \"foobar\"}]})\n\n    stage = dvc.stage.load_one(name=name)\n    dvcfile = stage.dvcfile\n\n    with pytest.raises(ParametrizedDumpError) as exc:\n        dvcfile.dump(stage)\n\n    assert str(exc.value) == f\"cannot dump a parametrized stage: '{name}'\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_dvc_formatting_retained__format_dvc_line.if_cache_in_line_or_m.else_.return.line": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro.py_test_dvc_formatting_retained__format_dvc_line.if_cache_in_line_or_m.else_.return.line", "embedding": null, "metadata": {"file_path": "tests/func/test_repro.py", "file_name": "test_repro.py", "file_type": "text/x-python", "category": "test", "start_line": 1169, "end_line": 1207, "span_ids": ["_format_dvc_line", "test_dvc_formatting_retained"], "tokens": 370}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_dvc_formatting_retained(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo content\")\n    stage = run_copy(\n        \"foo\", \"foo_copy\", fname=\"foo_copy.dvc\", single_stage=True\n    )\n    stage_path = tmp_dir / stage.relpath\n\n    # Add comments and custom formatting to DVC-file\n    lines = list(map(_format_dvc_line, stage_path.read_text().splitlines()))\n    lines.insert(0, \"# Starting comment\")\n    stage_text = \"\".join(line + \"\\n\" for line in lines)\n    stage_path.write_text(stage_text)\n\n    # Rewrite data source and repro\n    (tmp_dir / \"foo\").write_text(\"new foo\")\n    dvc.reproduce(\"foo_copy.dvc\", force=True)\n\n    def _hide_md5(text):\n        return re.sub(r\"\\b[a-f0-9]{32}\\b\", \"<md5>\", text)\n\n    def _hide_size(text):\n        return re.sub(r\"size: [0-9]*\\b\", \"size: <size>\", text)\n\n    def _mask(text):\n        return _hide_size(_hide_md5(text))\n\n    assert _mask(stage_text) == _mask(stage_path.read_text())\n\n\ndef _format_dvc_line(line):\n    # Add line comment for all cache and md5 keys\n    if \"cache:\" in line or \"md5:\" in line:\n        return line + \" # line comment\"\n    # Format command as one word per line\n    elif line.startswith(\"cmd: \"):\n        pre, command = line.split(None, 1)\n        return pre + \" >\\n\" + \"\\n\".join(\"  \" + s for s in command.split())\n    else:\n        return line", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_desc_is_preserved_test_desc_is_preserved.assert_new_data_outs_0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage.py_test_desc_is_preserved_test_desc_is_preserved.assert_new_data_outs_0", "embedding": null, "metadata": {"file_path": "tests/func/test_stage.py", "file_name": "test_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 184, "end_line": 200, "span_ids": ["test_desc_is_preserved"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_desc_is_preserved(tmp_dir, dvc):\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo content\")\n\n    data = load_yaml(stage.path)\n    stage_desc = \"test stage description\"\n    out_desc = \"test out description\"\n    data[\"desc\"] = stage_desc\n    data[\"outs\"][0][\"desc\"] = out_desc\n    dump_yaml(stage.path, data)\n\n    dvcfile = SingleStageFile(dvc, stage.path)\n    new_stage = dvcfile.stage\n    dvcfile.dump(new_stage)\n\n    new_data = load_yaml(stage.path)\n    assert new_data[\"desc\"] == stage_desc\n    assert new_data[\"outs\"][0][\"desc\"] == out_desc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_repotree_walk_fetch_test_repotree_walk_fetch.for___hi_in_out_dir_cach.assert_os_path_exists_dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_tree.py_test_repotree_walk_fetch_test_repotree_walk_fetch.for___hi_in_out_dir_cach.assert_os_path_exists_dvc", "embedding": null, "metadata": {"file_path": "tests/func/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 190, "end_line": 203, "span_ids": ["test_repotree_walk_fetch"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repotree_walk_fetch(tmp_dir, dvc, scm, local_remote):\n    out = tmp_dir.dvc_gen({\"dir\": {\"foo\": \"foo\"}}, commit=\"init\")[0].outs[0]\n    dvc.push()\n    remove(dvc.cache.local.cache_dir)\n    remove(tmp_dir / \"dir\")\n\n    tree = RepoTree(dvc, fetch=True)\n    for _, _, _ in tree.walk(\"dir\"):\n        pass\n\n    assert os.path.exists(out.cache_path)\n    for _, hi in out.dir_cache.items():\n        assert hi.name == out.tree.PARAM_CHECKSUM\n        assert os.path.exists(dvc.cache.local.tree.hash_to_path_info(hi.value))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_hdfs_server_hdfs.yield_HDFS_url_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_hdfs_server_hdfs.yield_HDFS_url_", "embedding": null, "metadata": {"file_path": "tests/remotes/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 133, "end_line": 160, "span_ids": ["hdfs_server", "hdfs"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture(scope=\"session\")\ndef hdfs_server(hadoop, docker_compose, docker_services):\n    import pyarrow.fs\n\n    port = docker_services.port_for(\"hdfs\", 8020)\n    web_port = docker_services.port_for(\"hdfs\", 50070)\n\n    def _check():\n        try:\n            # NOTE: just connecting or even opening something is not enough,\n            # we need to make sure that we are able to write something.\n            conn = pyarrow.fs.HadoopFileSystem(\"hdfs://127.0.0.1\", port)\n            with conn.open_output_stream(str(uuid.uuid4())) as fobj:\n                fobj.write(b\"test\")\n            return True\n        except (pyarrow.ArrowException, OSError):\n            return False\n\n    docker_services.wait_until_responsive(timeout=30.0, pause=5, check=_check)\n\n    return {\"hdfs\": port, \"webhdfs\": web_port}\n\n\n@pytest.fixture\ndef hdfs(hdfs_server):\n    port = hdfs_server[\"hdfs\"]\n    url = f\"hdfs://127.0.0.1:{port}/{uuid.uuid4()}\"\n    yield HDFS(url)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_WebHDFS_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_WebHDFS_", "embedding": null, "metadata": {"file_path": "tests/remotes/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 152, "end_line": 209, "span_ids": ["WebHDFS.read_bytes", "WebHDFS.is_dir", "WebHDFS.exists", "WebHDFS._webhdfs", "WebHDFS.write_text", "WebHDFS", "WebHDFS.read_text", "WebHDFS.mkdir", "WebHDFS.write_bytes", "WebHDFS.is_file", "webhdfs"], "tokens": 452}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class WebHDFS(Base, URLInfo):  # pylint: disable=abstract-method\n    @contextmanager\n    def _webhdfs(self):\n        from hdfs import InsecureClient\n\n        client = InsecureClient(f\"http://{self.host}:{self.port}\", self.user)\n        yield client\n\n    def is_file(self):\n        with self._webhdfs() as _hdfs:\n            return _hdfs.status(self.path)[\"type\"] == \"FILE\"\n\n    def is_dir(self):\n        with self._webhdfs() as _hdfs:\n            return _hdfs.status(self.path)[\"type\"] == \"DIRECTORY\"\n\n    def exists(self):\n        with self._webhdfs() as _hdfs:\n            return _hdfs.status(self.path, strict=False) is not None\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert mode == 0o777\n        assert parents\n        assert not exist_ok\n\n        with self._webhdfs() as _hdfs:\n            # NOTE: hdfs.makekdirs always creates parents\n            _hdfs.makedirs(self.path, permission=mode)\n\n    def write_bytes(self, contents):\n        with self._webhdfs() as _hdfs:\n            with _hdfs.write(self.path, overwrite=True) as writer:\n                writer.write(contents)\n\n    def write_text(self, contents, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        self.write_bytes(contents.encode(encoding))\n\n    def read_bytes(self):\n        with self._webhdfs() as _hdfs:\n            with _hdfs.read(self.path) as reader:\n                return reader.read()\n\n    def read_text(self, encoding=None, errors=None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        assert errors is None\n        return self.read_bytes().decode(encoding)\n\n\n@pytest.fixture\ndef webhdfs(hdfs_server):\n    port = hdfs_server[\"webhdfs\"]\n    url = f\"webhdfs://127.0.0.1:{port}/{uuid.uuid4()}\"\n    yield WebHDFS(url)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/webdav.py__pylint_disable_abstract_Webdav.write_text.Path_self_path_write_tex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/webdav.py__pylint_disable_abstract_Webdav.write_text.Path_self_path_write_tex", "embedding": null, "metadata": {"file_path": "tests/remotes/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 32, "span_ids": ["Webdav.mkdir", "Webdav", "Webdav.get_url", "docstring", "Webdav.write_bytes", "Webdav.write_text"], "tokens": 230}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# pylint:disable=abstract-method\nimport os\nfrom pathlib import Path\nfrom wsgiref.simple_server import make_server\n\nimport pytest\nfrom funcy import first\nfrom wsgidav.wsgidav_app import WsgiDAVApp\n\nfrom dvc.path_info import WebDAVURLInfo\nfrom dvc.utils.fs import makedirs\nfrom tests.utils.httpd import run_server_on_thread\n\nfrom .base import Base\n\nAUTH = {\"user1\": {\"password\": \"password1\"}}\n\n\nclass Webdav(Base, WebDAVURLInfo):\n    @staticmethod\n    def get_url(port):  # pylint: disable=arguments-differ\n        return f\"webdav://localhost:{port}\"\n\n    def mkdir(self, mode=0o777, parents=False, exist_ok=False):\n        assert parents\n        makedirs(self.path, exist_ok=exist_ok)\n\n    def write_bytes(self, contents):\n        Path(self.path).write_bytes(contents)\n\n    def write_text(self, contents, encoding=None, errors=None):\n        Path(self.path).write_text(contents, encoding=encoding, errors=errors)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/webdav.py_webdav_server_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/webdav.py_webdav_server_", "embedding": null, "metadata": {"file_path": "tests/remotes/webdav.py", "file_name": "webdav.py", "file_type": "text/x-python", "category": "implementation", "start_line": 35, "end_line": 63, "span_ids": ["webdav", "webdav_server"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef webdav_server(test_config, tmp_path_factory):\n    test_config.requires(\"webdav\")\n\n    host, port = \"localhost\", 0\n    directory = os.fspath(tmp_path_factory.mktemp(\"http\"))\n    dirmap = {\"/\": directory}\n\n    app = WsgiDAVApp(\n        {\n            \"host\": host,\n            \"port\": port,\n            \"provider_mapping\": dirmap,\n            \"simple_dc\": {\"user_mapping\": {\"*\": AUTH}},\n        }\n    )\n    server = make_server(host, port, app)\n    with run_server_on_thread(server) as httpd:\n        yield httpd\n\n\n@pytest.fixture\ndef webdav(webdav_server):\n    url = Webdav.get_url(webdav_server.server_port)\n    ret = Webdav(url)\n    user, secrets = first(AUTH.items())\n    ret.config = {\"url\": url, \"user\": user, **secrets}\n    yield ret", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_add.py_from_dvc_cli_import_parse_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_add.py_from_dvc_cli_import_parse_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["test_add", "imports"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cli import parse_args\nfrom dvc.command.add import CmdAdd\n\n\ndef test_add(mocker, dvc):\n    cli_args = parse_args(\n        [\n            \"add\",\n            \"--recursive\",\n            \"--no-commit\",\n            \"--external\",\n            \"--glob\",\n            \"--file\",\n            \"file\",\n            \"--desc\",\n            \"stage description\",\n            \"data\",\n        ]\n    )\n    assert cli_args.func == CmdAdd\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"add\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        [\"data\"],\n        recursive=True,\n        no_commit=True,\n        glob=True,\n        fname=\"file\",\n        external=True,\n        desc=\"stage description\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_repo_repo.return.dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_repo_repo.return.dvc", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_dag.py", "file_name": "test_dag.py", "file_type": "text/x-python", "category": "test", "start_line": 25, "end_line": 45, "span_ids": ["repo"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef repo(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"a\", \"a\")\n    tmp_dir.dvc_gen(\"b\", \"b\")\n\n    dvc.run(\n        no_exec=True, deps=[\"a\", \"c\"], outs=[\"d\", \"e\"], cmd=\"cmd1\", name=\"1\"\n    )\n    dvc.run(\n        no_exec=True, deps=[\"b\", \"c\"], outs=[\"f\", \"g\"], cmd=\"cmd2\", name=\"2\"\n    )\n    dvc.run(\n        no_exec=True,\n        deps=[\"a\", \"b\", \"c\"],\n        outs=[\"h\", \"i\"],\n        cmd=\"cmd3\",\n        name=\"3\",\n    )\n    dvc.run(no_exec=True, deps=[\"a\", \"h\"], outs=[\"j\"], cmd=\"cmd4\", name=\"4\")\n\n    return dvc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py__NOTE_granular_or_not__test_build_full_outs.assert_set_G_edges_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py__NOTE_granular_or_not__test_build_full_outs.assert_set_G_edges_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_dag.py", "file_name": "test_dag.py", "file_type": "text/x-python", "category": "test", "start_line": 83, "end_line": 100, "span_ids": ["test_build_full", "test_build_full_outs"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# NOTE: granular or not, full outs DAG should be the same\n@pytest.mark.parametrize(\"granular\", [True, False])\ndef test_build_full_outs(repo, granular):\n    target = \"h\" if granular else \"3\"\n    G = _build(repo, target=target, outs=True, full=True)\n    assert set(G.nodes()) == {\"j\", \"i\", \"d\", \"b\", \"g\", \"f\", \"e\", \"a\", \"h\"}\n    assert set(G.edges()) == {\n        (\"d\", \"a\"),\n        (\"e\", \"a\"),\n        (\"f\", \"b\"),\n        (\"g\", \"b\"),\n        (\"h\", \"a\"),\n        (\"h\", \"b\"),\n        (\"i\", \"a\"),\n        (\"i\", \"b\"),\n        (\"j\", \"a\"),\n        (\"j\", \"h\"),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_test_show_ascii_test_show_ascii.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_dag.py_test_show_ascii_test_show_ascii.assert_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_dag.py", "file_name": "test_dag.py", "file_type": "text/x-python", "category": "test", "start_line": 103, "end_line": 122, "span_ids": ["test_show_ascii"], "tokens": 279}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_ascii(repo):\n    assert [\n        line.rstrip() for line in _show_ascii(repo.graph).splitlines()\n    ] == [\n        \"                        +----------------+                          +----------------+\",  # noqa: E501\n        \"                        | stage: 'a.dvc' |                          | stage: 'b.dvc' |\",  # noqa: E501\n        \"                       *+----------------+****                      +----------------+\",  # noqa: E501\n        \"                  *****           *           *****                  ***           ***\",  # noqa: E501\n        \"              ****                *                *****           **                 **\",  # noqa: E501\n        \"           ***                     *                    ***      **                     **\",  # noqa: E501\n        \"+------------+                     **                   +------------+              +------------+\",  # noqa: E501\n        \"| stage: '1' |                       **                 | stage: '3' |              | stage: '2' |\",  # noqa: E501\n        \"+------------+                         ***              +------------+              +------------+\",  # noqa: E501\n        \"                                          **           ***\",\n        \"                                            **       **\",\n        \"                                              **   **\",\n        \"                                          +------------+\",\n        \"                                          | stage: '4' |\",\n        \"                                          +------------+\",\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_run_test_experiments_run.cmd_repo_experiments_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_run_test_experiments_run.cmd_repo_experiments_run_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 86, "end_line": 106, "span_ids": ["test_experiments_run"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"args, resume\", [([\"exp\", \"run\"], None), ([\"exp\", \"resume\"], \":last\")]\n)\ndef test_experiments_run(dvc, scm, mocker, args, resume):\n    default_arguments = {\n        \"params\": [],\n        \"name\": None,\n        \"queue\": False,\n        \"run_all\": False,\n        \"jobs\": None,\n        \"checkpoint_resume\": resume,\n        \"tmp_dir\": False,\n    }\n\n    default_arguments.update(repro_arguments)\n\n    cmd = CmdExperimentsRun(parse_args(args))\n    mocker.patch.object(cmd.repo, \"reproduce\")\n    mocker.patch.object(cmd.repo.experiments, \"run\")\n    cmd.run()\n    cmd.repo.experiments.run.assert_called_with(**default_arguments)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp_url.py_test_failed_import_url_test_failed_import_url.with_caplog_at_level_logg.assert_expected_error_in_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp_url.py_test_failed_import_url_test_failed_import_url.with_caplog_at_level_logg.assert_expected_error_in_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_imp_url.py", "file_name": "test_imp_url.py", "file_type": "text/x-python", "category": "test", "start_line": 24, "end_line": 37, "span_ids": ["test_failed_import_url"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_failed_import_url(mocker, caplog):\n    cli_args = parse_args([\"import-url\", \"http://somesite.com/file_name\"])\n    assert cli_args.func == CmdImportUrl\n\n    cmd = cli_args.func(cli_args)\n    mocker.patch.object(cmd.repo, \"imp_url\", side_effect=DvcException(\"error\"))\n    with caplog.at_level(logging.ERROR, logger=\"dvc\"):\n        assert cmd.run() == 1\n        expected_error = (\n            \"failed to import http://somesite.com/file_name. \"\n            \"You could also try downloading it manually, and \"\n            \"adding it with `dvc add`.\"\n        )\n        assert expected_error in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp_url.py_test_import_url_no_exec_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_imp_url.py_test_import_url_no_exec_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_imp_url.py", "file_name": "test_imp_url.py", "file_type": "text/x-python", "category": "test", "start_line": 40, "end_line": 62, "span_ids": ["test_import_url_no_exec"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_url_no_exec(mocker):\n    cli_args = parse_args(\n        [\n            \"import-url\",\n            \"--no-exec\",\n            \"src\",\n            \"out\",\n            \"--file\",\n            \"file\",\n            \"--desc\",\n            \"description\",\n        ]\n    )\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch.object(cmd.repo, \"imp_url\", autospec=True)\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        \"src\", out=\"out\", fname=\"file\", no_exec=True, desc=\"description\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_http_method_test_http_method.assert_isinstance_tree__a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_http_method_test_http_method.assert_isinstance_tree__a", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 108, "end_line": 127, "span_ids": ["test_http_method"], "tokens": 131}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_http_method(dvc):\n    from requests.auth import HTTPBasicAuth\n\n    user = \"username\"\n    password = \"password\"\n    auth = HTTPBasicAuth(user, password)\n    config = {\n        \"url\": \"http://example.com/\",\n        \"path_info\": \"file.html\",\n        \"auth\": \"basic\",\n        \"user\": user,\n        \"password\": password,\n        \"method\": \"PUT\",\n    }\n\n    tree = HTTPTree(dvc, config)\n\n    assert tree._auth_method() == auth\n    assert tree.method == \"PUT\"\n    assert isinstance(tree._auth_method(), HTTPBasicAuth)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_exists_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_http.py_test_exists_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 130, "end_line": 156, "span_ids": ["test_exists"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_exists(mocker):\n    import io\n\n    import requests\n\n    from dvc.path_info import URLInfo\n\n    res = requests.Response()\n    # need to add `raw`, as `exists()` fallbacks to a streaming GET requests\n    # on HEAD request failure.\n    res.raw = io.StringIO(\"foo\")\n\n    tree = HTTPTree(None, {})\n    mocker.patch.object(tree, \"request\", return_value=res)\n\n    url = URLInfo(\"https://example.org/file.txt\")\n\n    res.status_code = 200\n    assert tree.exists(url) is True\n\n    res.status_code = 404\n    assert tree.exists(url) is False\n\n    res.status_code = 403\n    with pytest.raises(HTTPError):\n        tree.exists(url)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_webdav.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_webdav.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_webdav.py", "file_name": "test_webdav.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 46, "span_ids": ["test_password", "test_userurl", "test_init", "imports", "test_user"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.tree.webdav import WebDAVTree\n\n# Test configuration\nurl = \"webdavs://example.com/public.php/webdav\"\nuser = \"username\"\nuserurl = f\"webdavs://{user}@example.com/public.php/webdav\"\npassword = \"password\"\n\n\n# Test minimum requiered configuration (url)\ndef test_init(dvc):\n    config = {\"url\": url}\n    tree = WebDAVTree(dvc, config)\n\n    assert tree.path_info == url\n\n\n# Test username from configuration\n@pytest.mark.parametrize(\n    \"config\", [{\"url\": url, \"user\": user}, {\"url\": userurl}]\n)\ndef test_user(dvc, config):\n    tree = WebDAVTree(dvc, config)\n\n    assert tree.user == user\n\n\n# Test username extraction from url\ndef test_userurl(dvc):\n    config = {\"url\": userurl}\n    tree = WebDAVTree(dvc, config)\n\n    assert tree.path_info == userurl\n    assert tree.user == user\n    assert tree.path_info.user == user\n\n\n# test password from config\ndef test_password(dvc):\n    config = {\"url\": url, \"user\": user, \"password\": password}\n    tree = WebDAVTree(dvc, config)\n\n    assert tree.password == password", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_webhdfs.py_from_dvc_tree_webhdfs_imp_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/remote/test_webhdfs.py_from_dvc_tree_webhdfs_imp_", "embedding": null, "metadata": {"file_path": "tests/unit/remote/test_webhdfs.py", "file_name": "test_webhdfs.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["test_init", "imports"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.tree.webhdfs import WebHDFSTree\n\nuser = \"test\"\nwebhdfs_token = \"token\"\nwebhdfs_alias = \"alias-name\"\nhdfscli_config = \"path/to/cli/config\"\n\n\ndef test_init(dvc):\n    url = \"webhdfs://test@127.0.0.1:50070\"\n    config = {\n        \"url\": url,\n        \"webhdfs_token\": webhdfs_token,\n        \"webhdfs_alias\": webhdfs_alias,\n        \"hdfscli_config\": hdfscli_config,\n        \"user\": user,\n    }\n\n    tree = WebHDFSTree(dvc, config)\n    assert tree.path_info == url\n    assert tree.token == webhdfs_token\n    assert tree.alias == webhdfs_alias\n    assert tree.path_info.user == user\n    assert tree.hdfscli_config == hdfscli_config", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_select_unwrap_test_select_unwrap.assert_node_1_2_3_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_select_unwrap_test_select_unwrap.assert_node_1_2_3_", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 159, "end_line": 172, "span_ids": ["test_select_unwrap"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_select_unwrap():\n    context = Context({\"dct\": {\"foo\": \"bar\"}}, lst=[1, 2, 3], foo=\"foo\")\n\n    assert context.select(\"dct.foo\", unwrap=True) == \"bar\"\n    assert context.select(\"lst.0\", unwrap=True) == 1\n    assert context.select(\"foo\", unwrap=True) == \"foo\"\n\n    node = context.select(\"dct\", unwrap=True)\n    assert isinstance(node, dict) and recurse_not_a_node(node)\n    assert node == {\"foo\": \"bar\"}\n\n    node = context.select(\"lst\", unwrap=True)\n    assert isinstance(node, list) and recurse_not_a_node(node)\n    assert node == [1, 2, 3]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_merge_dict_test_merge_dict.assert_node_layers_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_merge_dict_test_merge_dict.assert_node_layers_", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 175, "end_line": 194, "span_ids": ["test_merge_dict"], "tokens": 195}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_merge_dict():\n    d1 = {\"Train\": {\"us\": {\"lr\": 10}}}\n    d2 = {\"Train\": {\"us\": {\"layers\": 100}}}\n\n    c1 = Context(d1)\n    c2 = Context(d2)\n\n    c1.merge_update(c2)\n    assert c1.select(\"Train.us\") == CtxDict(lr=10, layers=100)\n\n    with pytest.raises(MergeError):\n        # cannot overwrite by default\n        c1.merge_update({\"Train\": {\"us\": {\"lr\": 15}}})\n\n    c1.merge_update({\"Train\": {\"us\": {\"lr\": 15}}}, overwrite=True)\n    node = c1.select(\"Train.us\")\n    assert node == {\"lr\": 15, \"layers\": 100}\n    assert isinstance(node, CtxDict)\n    assert node[\"lr\"] == Value(15)\n    assert node[\"layers\"] == Value(100)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_node_value_test_node_value.assert_context_foo_val": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_node_value_test_node_value.assert_context_foo_val", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 378, "end_line": 402, "span_ids": ["test_node_value"], "tokens": 242}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_node_value():\n    d = {\"dct\": {\"foo\": \"bar\"}, \"lst\": [1, 2, 3], \"foo\": \"foo\"}\n    context = Context(d)\n    assert isinstance(context, (Context, CtxDict))\n    assert isinstance(context[\"dct\"], CtxDict)\n    assert isinstance(context[\"lst\"], CtxList)\n    assert isinstance(context[\"foo\"], Value)\n    assert isinstance(context[\"dct\"][\"foo\"], Value)\n    assert isinstance(context[\"lst\"][0], Value)\n\n    assert context.value == d\n    assert recurse_not_a_node(context.value)\n    assert isinstance(context.value[\"dct\"], dict)\n    assert isinstance(context.value[\"lst\"], list)\n    assert isinstance(context.value[\"foo\"], str)\n    assert isinstance(context.value[\"dct\"][\"foo\"], str)\n    assert isinstance(context.value[\"lst\"][0], int)\n\n    assert isinstance(context[\"dct\"].value, dict)\n    assert context[\"dct\"][\"foo\"].value == \"bar\"\n\n    assert isinstance(context[\"lst\"].value, list)\n    assert context[\"lst\"][1].value == 2\n\n    assert context[\"foo\"].value == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_resolve_resolves_dict_keys_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_resolve_resolves_dict_keys_", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 410, "end_line": 445, "span_ids": ["test_resolve_resolves_dict_keys", "test_resolve_resolves_boolean_value", "test_load_from_raises_if_file_is_directory", "test_load_from_raises_if_file_not_exist"], "tokens": 273}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_resolve_resolves_dict_keys():\n    d = {\"dct\": {\"foo\": \"foobar\", \"persist\": True}}\n\n    context = Context(d)\n    assert context.resolve({\"${dct.foo}\": {\"persist\": \"${dct.persist}\"}}) == {\n        \"foobar\": {\"persist\": True}\n    }\n\n\ndef test_resolve_resolves_boolean_value():\n    d = {\"enabled\": True, \"disabled\": False}\n    context = Context(d)\n\n    assert context.resolve_str(\"${enabled}\") is True\n    assert context.resolve_str(\"${disabled}\") is False\n\n    assert context.resolve_str(\"--flag ${enabled}\") == \"--flag true\"\n    assert context.resolve_str(\"--flag ${disabled}\") == \"--flag false\"\n\n\ndef test_load_from_raises_if_file_not_exist(tmp_dir, dvc):\n    with pytest.raises(ParamsLoadError) as exc_info:\n        Context.load_from(dvc.tree, tmp_dir / DEFAULT_PARAMS_FILE)\n\n    assert str(exc_info.value) == \"'params.yaml' does not exist\"\n\n\ndef test_load_from_raises_if_file_is_directory(tmp_dir, dvc):\n    data_dir = tmp_dir / \"data\"\n    data_dir.mkdir()\n\n    with pytest.raises(ParamsLoadError) as exc_info:\n        Context.load_from(dvc.tree, data_dir)\n\n    assert str(exc_info.value) == \"'data' is a directory\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_from_operator_import_item_test_list.assert_dir_info_to_list_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_from_operator_import_item_test_list.assert_dir_info_to_list_", "embedding": null, "metadata": {"file_path": "tests/unit/test_dir_info.py", "file_name": "test_dir_info.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 58, "span_ids": ["imports", "test_list"], "tokens": 565}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from operator import itemgetter\n\nimport pytest\nfrom pygtrie import Trie\n\nfrom dvc.dir_info import DirInfo, _merge\nfrom dvc.hash_info import HashInfo\nfrom dvc.path_info import PosixPathInfo, WindowsPathInfo\n\n\n@pytest.mark.parametrize(\n    \"lst, trie_dict\",\n    [\n        ([], {}),\n        (\n            [\n                {\"md5\": \"def\", \"relpath\": \"zzz\"},\n                {\"md5\": \"123\", \"relpath\": \"foo\"},\n                {\"md5\": \"abc\", \"relpath\": \"aaa\"},\n                {\"md5\": \"456\", \"relpath\": \"bar\"},\n            ],\n            {\n                (\"zzz\",): HashInfo(\"md5\", \"def\"),\n                (\"foo\",): HashInfo(\"md5\", \"123\"),\n                (\"bar\",): HashInfo(\"md5\", \"456\"),\n                (\"aaa\",): HashInfo(\"md5\", \"abc\"),\n            },\n        ),\n        (\n            [\n                {\"md5\": \"123\", \"relpath\": \"dir/b\"},\n                {\"md5\": \"456\", \"relpath\": \"dir/z\"},\n                {\"md5\": \"789\", \"relpath\": \"dir/a\"},\n                {\"md5\": \"abc\", \"relpath\": \"b\"},\n                {\"md5\": \"def\", \"relpath\": \"a\"},\n                {\"md5\": \"ghi\", \"relpath\": \"z\"},\n                {\"md5\": \"jkl\", \"relpath\": \"dir/subdir/b\"},\n                {\"md5\": \"mno\", \"relpath\": \"dir/subdir/z\"},\n                {\"md5\": \"pqr\", \"relpath\": \"dir/subdir/a\"},\n            ],\n            {\n                (\"dir\", \"b\"): HashInfo(\"md5\", \"123\"),\n                (\"dir\", \"z\"): HashInfo(\"md5\", \"456\"),\n                (\"dir\", \"a\"): HashInfo(\"md5\", \"789\"),\n                (\"b\",): HashInfo(\"md5\", \"abc\"),\n                (\"a\",): HashInfo(\"md5\", \"def\"),\n                (\"z\",): HashInfo(\"md5\", \"ghi\"),\n                (\"dir\", \"subdir\", \"b\"): HashInfo(\"md5\", \"jkl\"),\n                (\"dir\", \"subdir\", \"z\"): HashInfo(\"md5\", \"mno\"),\n                (\"dir\", \"subdir\", \"a\"): HashInfo(\"md5\", \"pqr\"),\n            },\n        ),\n    ],\n)\ndef test_list(lst, trie_dict):\n    dir_info = DirInfo.from_list(lst)\n    assert dir_info.trie == Trie(trie_dict)\n    assert dir_info.to_list() == sorted(lst, key=itemgetter(\"relpath\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_size_test_size.assert_dir_info_size_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_size_test_size.assert_dir_info_size_s", "embedding": null, "metadata": {"file_path": "tests/unit/test_dir_info.py", "file_name": "test_dir_info.py", "file_type": "text/x-python", "category": "test", "start_line": 61, "end_line": 88, "span_ids": ["test_size"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"trie_dict, size\",\n    [\n        ({}, 0),\n        (\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\", size=1),\n                (\"b\",): HashInfo(\"md5\", \"def\", size=2),\n                (\"c\",): HashInfo(\"md5\", \"ghi\", size=3),\n                (\"dir\", \"foo\"): HashInfo(\"md5\", \"jkl\", size=4),\n                (\"dir\", \"bar\"): HashInfo(\"md5\", \"mno\", size=5),\n                (\"dir\", \"baz\"): HashInfo(\"md5\", \"pqr\", size=6),\n            },\n            21,\n        ),\n        (\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\", size=1),\n                (\"b\",): HashInfo(\"md5\", \"def\", size=None),\n            },\n            None,\n        ),\n    ],\n)\ndef test_size(trie_dict, size):\n    dir_info = DirInfo()\n    dir_info.trie = Trie(trie_dict)\n    assert dir_info.size == size", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_nfiles_test_nfiles.assert_dir_info_nfiles_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_nfiles_test_nfiles.assert_dir_info_nfiles_", "embedding": null, "metadata": {"file_path": "tests/unit/test_dir_info.py", "file_name": "test_dir_info.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 118, "span_ids": ["test_nfiles"], "tokens": 237}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"trie_dict, nfiles\",\n    [\n        ({}, 0),\n        (\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\", size=1),\n                (\"b\",): HashInfo(\"md5\", \"def\", size=2),\n                (\"c\",): HashInfo(\"md5\", \"ghi\", size=3),\n                (\"dir\", \"foo\"): HashInfo(\"md5\", \"jkl\", size=4),\n                (\"dir\", \"bar\"): HashInfo(\"md5\", \"mno\", size=5),\n                (\"dir\", \"baz\"): HashInfo(\"md5\", \"pqr\", size=6),\n            },\n            6,\n        ),\n        (\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\", size=1),\n                (\"b\",): HashInfo(\"md5\", \"def\", size=None),\n            },\n            2,\n        ),\n    ],\n)\ndef test_nfiles(trie_dict, nfiles):\n    dir_info = DirInfo()\n    dir_info.trie = Trie(trie_dict)\n    assert dir_info.nfiles == nfiles", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_items_test_items.assert_list_dir_info_item": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_items_test_items.assert_list_dir_info_item", "embedding": null, "metadata": {"file_path": "tests/unit/test_dir_info.py", "file_name": "test_dir_info.py", "file_type": "text/x-python", "category": "test", "start_line": 121, "end_line": 154, "span_ids": ["test_items"], "tokens": 359}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"trie_dict, items\",\n    [\n        ({}, []),\n        (\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\"),\n                (\"b\",): HashInfo(\"md5\", \"def\"),\n                (\"c\",): HashInfo(\"md5\", \"ghi\"),\n                (\"dir\", \"foo\"): HashInfo(\"md5\", \"jkl\"),\n                (\"dir\", \"bar\"): HashInfo(\"md5\", \"mno\"),\n                (\"dir\", \"baz\"): HashInfo(\"md5\", \"pqr\"),\n                (\"dir\", \"subdir\", \"1\"): HashInfo(\"md5\", \"stu\"),\n                (\"dir\", \"subdir\", \"2\"): HashInfo(\"md5\", \"vwx\"),\n                (\"dir\", \"subdir\", \"3\"): HashInfo(\"md5\", \"yz\"),\n            },\n            [\n                (\"a\", HashInfo(\"md5\", \"abc\")),\n                (\"b\", HashInfo(\"md5\", \"def\")),\n                (\"c\", HashInfo(\"md5\", \"ghi\")),\n                (\"dir/foo\", HashInfo(\"md5\", \"jkl\")),\n                (\"dir/bar\", HashInfo(\"md5\", \"mno\")),\n                (\"dir/baz\", HashInfo(\"md5\", \"pqr\")),\n                (\"dir/subdir/1\", HashInfo(\"md5\", \"stu\")),\n                (\"dir/subdir/2\", HashInfo(\"md5\", \"vwx\")),\n                (\"dir/subdir/3\", HashInfo(\"md5\", \"yz\")),\n            ],\n        ),\n    ],\n)\ndef test_items(trie_dict, items):\n    dir_info = DirInfo()\n    dir_info.trie = Trie(trie_dict)\n    assert list(dir_info.items()) == items", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_items_with_path_test_items_with_path.assert_list_dir_info_item": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_items_with_path_test_items_with_path.assert_list_dir_info_item", "embedding": null, "metadata": {"file_path": "tests/unit/test_dir_info.py", "file_name": "test_dir_info.py", "file_type": "text/x-python", "category": "test", "start_line": 157, "end_line": 202, "span_ids": ["test_items_with_path"], "tokens": 375}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"path_info, trie_dict, items\",\n    [\n        (PosixPathInfo(), {}, []),\n        (WindowsPathInfo(), {}, []),\n        (\n            PosixPathInfo(\"/some/path\"),\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\"),\n                (\"dir\", \"foo\"): HashInfo(\"md5\", \"jkl\"),\n                (\"dir\", \"sub\", \"1\"): HashInfo(\"md5\", \"stu\"),\n            },\n            [\n                (PosixPathInfo(\"/some/path/a\"), HashInfo(\"md5\", \"abc\")),\n                (PosixPathInfo(\"/some/path/dir/foo\"), HashInfo(\"md5\", \"jkl\")),\n                (\n                    PosixPathInfo(\"/some/path/dir/sub/1\"),\n                    HashInfo(\"md5\", \"stu\"),\n                ),\n            ],\n        ),\n        (\n            WindowsPathInfo(\"C:\\\\some\\\\path\"),\n            {\n                (\"a\",): HashInfo(\"md5\", \"abc\"),\n                (\"dir\", \"foo\"): HashInfo(\"md5\", \"jkl\"),\n                (\"dir\", \"sub\", \"1\"): HashInfo(\"md5\", \"stu\"),\n            },\n            [\n                (WindowsPathInfo(\"C:\\\\some\\\\path\\\\a\"), HashInfo(\"md5\", \"abc\")),\n                (\n                    WindowsPathInfo(\"C:\\\\some\\\\path\\\\dir\\\\foo\"),\n                    HashInfo(\"md5\", \"jkl\"),\n                ),\n                (\n                    WindowsPathInfo(\"C:\\\\some\\\\path\\\\dir\\\\sub\\\\1\"),\n                    HashInfo(\"md5\", \"stu\"),\n                ),\n            ],\n        ),\n    ],\n)\ndef test_items_with_path(path_info, trie_dict, items):\n    dir_info = DirInfo()\n    dir_info.trie = Trie(trie_dict)\n    assert list(dir_info.items(path_info)) == items", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_merge_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_dir_info.py_test_merge_", "embedding": null, "metadata": {"file_path": "tests/unit/test_dir_info.py", "file_name": "test_dir_info.py", "file_type": "text/x-python", "category": "test", "start_line": 205, "end_line": 274, "span_ids": ["test_merge"], "tokens": 566}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"ancestor_dict, our_dict, their_dict, merged_dict\",\n    [\n        ({}, {}, {}, {}),\n        (\n            {(\"foo\",): HashInfo(\"md5\", \"123\")},\n            {\n                (\"foo\",): HashInfo(\"md5\", \"123\"),\n                (\"bar\",): HashInfo(\"md5\", \"345\"),\n            },\n            {\n                (\"foo\",): HashInfo(\"md5\", \"123\"),\n                (\"baz\",): HashInfo(\"md5\", \"678\"),\n            },\n            {\n                (\"foo\",): HashInfo(\"md5\", \"123\"),\n                (\"bar\",): HashInfo(\"md5\", \"345\"),\n                (\"baz\",): HashInfo(\"md5\", \"678\"),\n            },\n        ),\n        (\n            {\n                (\"common\",): HashInfo(\"md5\", \"123\"),\n                (\"subdir\", \"foo\"): HashInfo(\"md5\", \"345\"),\n            },\n            {\n                (\"common\",): HashInfo(\"md5\", \"123\"),\n                (\"subdir\", \"foo\"): HashInfo(\"md5\", \"345\"),\n                (\"subdir\", \"bar\"): HashInfo(\"md5\", \"678\"),\n            },\n            {\n                (\"common\",): HashInfo(\"md5\", \"123\"),\n                (\"subdir\", \"foo\"): HashInfo(\"md5\", \"345\"),\n                (\"subdir\", \"baz\"): HashInfo(\"md5\", \"91011\"),\n            },\n            {\n                (\"common\",): HashInfo(\"md5\", \"123\"),\n                (\"subdir\", \"foo\"): HashInfo(\"md5\", \"345\"),\n                (\"subdir\", \"bar\"): HashInfo(\"md5\", \"678\"),\n                (\"subdir\", \"baz\"): HashInfo(\"md5\", \"91011\"),\n            },\n        ),\n        (\n            {},\n            {(\"foo\",): HashInfo(\"md5\", \"123\")},\n            {(\"bar\",): HashInfo(\"md5\", \"456\")},\n            {\n                (\"foo\",): HashInfo(\"md5\", \"123\"),\n                (\"bar\",): HashInfo(\"md5\", \"456\"),\n            },\n        ),\n        (\n            {},\n            {},\n            {(\"bar\",): HashInfo(\"md5\", \"123\")},\n            {(\"bar\",): HashInfo(\"md5\", \"123\")},\n        ),\n        (\n            {},\n            {(\"bar\",): HashInfo(\"md5\", \"123\")},\n            {},\n            {(\"bar\",): HashInfo(\"md5\", \"123\")},\n        ),\n    ],\n)\ndef test_merge(ancestor_dict, our_dict, their_dict, merged_dict):\n    actual = _merge(Trie(ancestor_dict), Trie(our_dict), Trie(their_dict))\n    expected = Trie(merged_dict)\n    assert actual == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_info_in_subdir_test_remotes_empty.assert_Remotes_None_in": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_info_in_subdir_test_remotes_empty.assert_Remotes_None_in", "embedding": null, "metadata": {"file_path": "tests/unit/test_info.py", "file_name": "test_info.py", "file_type": "text/x-python", "category": "test", "start_line": 35, "end_line": 73, "span_ids": ["test_remotes_empty", "test_caches", "test_info_in_broken_git_repo", "test_info_in_subdir"], "tokens": 310}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_info_in_subdir(tmp_dir, scm, caplog):\n    dvc_subdir = tmp_dir / \"subdir\"\n    dvc_subdir.mkdir()\n\n    with dvc_subdir.chdir():\n        dvc_subdir.init(scm=False, dvc=True)\n        with dvc_subdir.dvc.config.edit() as conf:\n            del conf[\"core\"][\"no_scm\"]\n\n        dvc_info = get_dvc_info()\n\n    assert \"Repo: dvc (subdir), git\" in dvc_info\n\n\ndef test_info_in_broken_git_repo(tmp_dir, dvc, scm, caplog):\n    shutil.rmtree(dvc.scm.dir)\n    dvc_info = get_dvc_info()\n\n    assert \"Repo: dvc, git (broken)\" in dvc_info\n\n\ndef test_caches(tmp_dir, dvc, caplog):\n    tmp_dir.add_remote(\n        name=\"sshcache\", url=\"ssh://example.com/path\", default=False\n    )\n    with tmp_dir.dvc.config.edit() as conf:\n        conf[\"cache\"][\"ssh\"] = \"sshcache\"\n\n    dvc_info = get_dvc_info()\n\n    # Order of cache types is runtime dependent\n    assert re.search(\"Caches: (local, ssh|ssh, local)\", dvc_info)\n\n\ndef test_remotes_empty(tmp_dir, dvc, caplog):\n    # No remotes are configured\n    dvc_info = get_dvc_info()\n\n    assert \"Remotes: None\" in dvc_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_remotes_test_fs_info_in_repo.assert_re_search_r_Worksp": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_info.py_test_remotes_test_fs_info_in_repo.assert_re_search_r_Worksp", "embedding": null, "metadata": {"file_path": "tests/unit/test_info.py", "file_name": "test_info.py", "file_type": "text/x-python", "category": "test", "start_line": 76, "end_line": 94, "span_ids": ["test_remotes", "test_fs_info_in_repo"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remotes(tmp_dir, dvc, caplog):\n    tmp_dir.add_remote(name=\"server\", url=\"ssh://localhost\", default=False)\n    tmp_dir.add_remote(\n        name=\"r1\", url=\"azure://example.com/path\", default=False\n    )\n    tmp_dir.add_remote(name=\"r2\", url=\"remote://server/path\", default=False)\n\n    dvc_info = get_dvc_info()\n\n    assert re.search(\"Remotes: (ssh, azure|azure, ssh)\", dvc_info)\n\n\n@pytest.mark.skipif(psutil is None, reason=\"No psutil.\")\ndef test_fs_info_in_repo(tmp_dir, dvc, caplog):\n    os.mkdir(dvc.cache.local.cache_dir)\n    dvc_info = get_dvc_info()\n\n    assert re.search(r\"Cache directory: .* on .*\", dvc_info)\n    assert re.search(r\"Workspace directory: .* on .*\", dvc_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_resolve_primitives_list_access_test_resolve_primitives_list_access.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_resolve_primitives_list_access_test_resolve_primitives_list_access.None_4", "embedding": null, "metadata": {"file_path": "tests/unit/test_interpolate.py", "file_name": "test_interpolate.py", "file_type": "text/x-python", "category": "test", "start_line": 73, "end_line": 90, "span_ids": ["test_resolve_primitives_list_access"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_resolve_primitives_list_access():\n    context = Context(\n        {\n            \"dict\": [\n                {\"f\": \"f\"},\n                {\"fo\": \"fo\"},\n                {\"foo\": \"foo\"},\n                {\"foo\": [\"f\", \"o\", \"o\"]},\n            ]\n        }\n    )\n\n    assert context.resolve(\"${dict[0].f}\") == \"f\"\n    assert context.resolve(\"${dict[1].fo}\") == \"fo\"\n    assert context.resolve(\"${dict[2].foo}\") == \"foo\"\n    assert context.resolve(\"${dict[3].foo[0]}\") == \"f\"\n\n    assert context.resolve(\"${ dict.1.fo}${dict.3.foo.1}bar\") == \"foobar\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_resolve_collection_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_interpolate.py_test_resolve_collection_", "embedding": null, "metadata": {"file_path": "tests/unit/test_interpolate.py", "file_name": "test_interpolate.py", "file_type": "text/x-python", "category": "test", "start_line": 92, "end_line": 111, "span_ids": ["test_resolve_unicode", "test_resolve_collection"], "tokens": 214}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_resolve_collection():\n    from tests.func.parsing import (\n        CONTEXT_DATA,\n        RESOLVED_DVC_YAML_DATA,\n        TEMPLATED_DVC_YAML_DATA,\n    )\n\n    context = Context(CONTEXT_DATA)\n    resolved = context.resolve(TEMPLATED_DVC_YAML_DATA)\n    assert resolved == RESOLVED_DVC_YAML_DATA\n    assert recurse_not_a_node(resolved)\n\n\ndef test_resolve_unicode():\n    context = Context({\"\u0928\u0947\u092a\u093e\u0932\u0940\": {\"\u091a\u093f\u092f\u093e\": [\"\u091a\u093f\", \"\u092f\u093e\"]}})\n    assert context.resolve_str(\"${\u0928\u0947\u092a\u093e\u0932\u0940.\u091a\u093f\u092f\u093e[0]}${\u0928\u0947\u092a\u093e\u0932\u0940.\u091a\u093f\u092f\u093e[1]}\") == \"\u091a\u093f\u092f\u093e\"\n    assert (\n        context.resolve_str(\"${\u0928\u0947\u092a\u093e\u0932\u0940[\u091a\u093f\u092f\u093e][0]}${\u0928\u0947\u092a\u093e\u0932\u0940[\u091a\u093f\u092f\u093e][1]}\") == \"\u091a\u093f\u092f\u093e\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_dirty_file_test_get_hash_dirty_dir.assert_actual_dir_info_nf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo.py_test_get_hash_dirty_file_test_get_hash_dirty_dir.assert_actual_dir_info_nf", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 545, "end_line": 563, "span_ids": ["test_get_hash_dirty_file", "test_get_hash_dirty_dir"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_hash_dirty_file(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"file\", \"file\")\n    (tmp_dir / \"file\").write_text(\"something\")\n\n    tree = RepoTree(dvc)\n    actual = tree.get_hash(PathInfo(tmp_dir) / \"file\")\n    expected = HashInfo(\"md5\", \"8c7dd922ad47494fc02c388e12c00eac\")\n    assert actual == expected\n\n\ndef test_get_hash_dirty_dir(tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"dir\": {\"foo\": \"foo\", \"bar\": \"bar\"}})\n    (tmp_dir / \"dir\" / \"baz\").write_text(\"baz\")\n\n    tree = RepoTree(dvc)\n    actual = tree.get_hash(PathInfo(tmp_dir) / \"dir\")\n    expected = HashInfo(\"md5\", \"ba75a2162ca9c29acecb7957105a0bc2.dir\")\n    assert actual == expected\n    assert actual.dir_info.nfiles == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_pytest_repo_tree.yield_RepoTree_dvc_fetch": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_repo_metadata.py_pytest_repo_tree.yield_RepoTree_dvc_fetch", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_repo_metadata.py", "file_name": "test_repo_metadata.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["imports", "repo_tree"], "tokens": 297}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.path_info import PathInfo\nfrom dvc.tree.repo import RepoTree\nfrom tests.unit.tree.test_repo import make_subrepo\n\n\n@pytest.fixture\ndef repo_tree(tmp_dir, dvc, scm):\n    fs_structure = {\n        \"models\": {  # mixed dvc + git directory\n            \"train.py\": \"train dot py\",\n            \"test.py\": \"test dot py\",\n        },\n        \"README.md\": \"my little project\",  # file\n        \"src\": {  # repo-only directory\n            \"utils\": {\n                \"__init__.py\": \"\",\n                \"serve_model.py\": \"# this will serve a model `soon`\",\n            }\n        },\n    }\n    dvc_structure = {\n        \"data\": {  # dvc only directory\n            \"raw\": {\n                \"raw-1.csv\": \"one, dot, csv\",\n                \"raw-2.csv\": \"two, dot, csv\",\n            },\n            \"processed\": {\n                \"processed-1.csv\": \"1, dot, csv\",\n                \"processed-2.csv\": \"2, dot, csv\",\n            },\n        },\n        \"models/transform.pickle\": \"model model\",  # file\n    }\n\n    tmp_dir.scm_gen(fs_structure, commit=\"repo init\")\n    tmp_dir.dvc_gen(dvc_structure, commit=\"use dvc\")\n\n    yield RepoTree(dvc, fetch=True, subrepos=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_tree.py_os_test_get_cloud_tree.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_tree.py_os_test_get_cloud_tree.None_2", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 24, "span_ids": ["imports", "test_get_cloud_tree"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport stat\n\nimport pytest\n\nfrom dvc.config import ConfigError\nfrom dvc.path_info import CloudURLInfo, PathInfo\nfrom dvc.tree import LocalTree, get_cloud_tree\n\n\ndef test_get_cloud_tree(tmp_dir, dvc):\n    tmp_dir.add_remote(name=\"base\", url=\"s3://bucket/path\", default=False)\n    tmp_dir.add_remote(name=\"first\", url=\"remote://base/first\", default=False)\n    tmp_dir.add_remote(\n        name=\"second\", url=\"remote://first/second\", default=False\n    )\n\n    base = CloudURLInfo(\"s3://bucket/path\")\n    first = base / \"first\"\n    second = first / \"second\"\n\n    assert get_cloud_tree(dvc, name=\"base\").path_info == base\n    assert get_cloud_tree(dvc, name=\"first\").path_info == first\n    assert get_cloud_tree(dvc, name=\"second\").path_info == second", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_tree.py_test_get_cloud_tree_validate_test_get_cloud_tree_validate.with_pytest_raises_Config.get_cloud_tree_dvc_name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_tree.py_test_get_cloud_tree_validate_test_get_cloud_tree_validate.with_pytest_raises_Config.get_cloud_tree_dvc_name_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 51, "span_ids": ["test_get_cloud_tree_validate"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_cloud_tree_validate(tmp_dir, dvc):\n    tmp_dir.add_remote(\n        name=\"base\", url=\"ssh://example.com/path\", default=False\n    )\n    tmp_dir.add_remote(\n        name=\"first\",\n        config={\"url\": \"remote://base/first\", \"type\": \"symlink\"},\n        default=False,\n    )\n    tmp_dir.add_remote(\n        name=\"second\",\n        config={\"url\": \"remote://first/second\", \"oss_key_id\": \"mykey\"},\n        default=False,\n    )\n\n    assert get_cloud_tree(dvc, name=\"base\").config == {\n        \"url\": \"ssh://example.com/path\"\n    }\n    assert get_cloud_tree(dvc, name=\"first\").config == {\n        \"url\": \"ssh://example.com/path/first\",\n        \"type\": [\"symlink\"],\n    }\n\n    with pytest.raises(ConfigError):\n        get_cloud_tree(dvc, name=\"second\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_tree.py_test_upload_file_mode_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_tree.py_test_upload_file_mode_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_tree.py", "file_name": "test_tree.py", "file_type": "text/x-python", "category": "test", "start_line": 54, "end_line": 67, "span_ids": ["test_upload_file_mode"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(os.name == \"nt\", reason=\"Not supported for Windows.\")\n@pytest.mark.parametrize(\n    \"mode, expected\", [(None, LocalTree.CACHE_MODE), (0o777, 0o777)],\n)\ndef test_upload_file_mode(tmp_dir, mode, expected):\n    tmp_dir.gen(\"src\", \"foo\")\n    src = PathInfo(tmp_dir / \"src\")\n    dest = PathInfo(tmp_dir / \"dest\")\n    tree = LocalTree(None, {\"url\": os.fspath(tmp_dir)})\n    tree.upload(src, dest, file_mode=mode)\n    assert (tmp_dir / \"dest\").exists()\n    assert (tmp_dir / \"dest\").read_text() == \"foo\"\n    assert stat.S_IMODE(os.stat(dest).st_mode) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_run_server_on_thread_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/utils/httpd.py_run_server_on_thread_", "embedding": null, "metadata": {"file_path": "tests/utils/httpd.py", "file_name": "httpd.py", "file_type": "text/x-python", "category": "implementation", "start_line": 93, "end_line": 125, "span_ids": ["StaticFileServer.__exit__", "StaticFileServer.__init__", "StaticFileServer.__enter__", "run_server_on_thread", "StaticFileServer"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@contextmanager\ndef run_server_on_thread(server):\n    thread = threading.Thread(target=server.serve_forever)\n    thread.daemon = True\n    thread.start()\n\n    yield server\n\n    server.socket.close()\n    server.shutdown()\n    server.server_close()\n\n\nclass StaticFileServer:\n    _lock = threading.Lock()\n\n    def __init__(self, directory):\n        from functools import partial\n\n        addr = (\"localhost\", 0)\n        req = partial(TestRequestHandler, directory=directory)\n        server = HTTPServer(addr, req)\n        self.runner = run_server_on_thread(server)\n\n    # pylint: disable=no-member\n    def __enter__(self):\n        self._lock.acquire()\n        return self.runner.__enter__()\n\n    def __exit__(self, *args):\n        self.runner.__exit__(*args)\n        self._lock.release()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_logging__format_preamble.return.f_failed_to_parse_msg_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_logging__format_preamble.return.f_failed_to_parse_msg_i", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 56, "span_ids": ["imports", "ResolveError", "_format_preamble", "EntryNotFound"], "tokens": 298}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom collections.abc import Mapping, Sequence\nfrom copy import deepcopy\nfrom typing import TYPE_CHECKING, Any, Dict, NamedTuple, Union\n\nfrom funcy import cached_property, collecting, first, isa, join, reraise\n\nfrom dvc.dependency.param import ParamsDependency\nfrom dvc.exceptions import DvcException\nfrom dvc.parsing.interpolate import ParseError\nfrom dvc.path_info import PathInfo\nfrom dvc.utils import relpath\n\nfrom .context import (\n    Context,\n    ContextError,\n    KeyNotInContext,\n    MergeError,\n    Node,\n    VarsAlreadyLoaded,\n)\nfrom .interpolate import (\n    check_recursive_parse_errors,\n    is_interpolated_string,\n    recurse,\n    to_str,\n)\n\nif TYPE_CHECKING:\n    from dvc.repo import Repo\n\nlogger = logging.getLogger(__name__)\n\nSTAGES_KWD = \"stages\"\nVARS_KWD = \"vars\"\nWDIR_KWD = \"wdir\"\nDEFAULT_PARAMS_FILE = ParamsDependency.DEFAULT_PARAMS_FILE\nPARAMS_KWD = \"params\"\nFOREACH_KWD = \"foreach\"\nDO_KWD = \"do\"\n\nDEFAULT_SENTINEL = object()\n\nJOIN = \"@\"\n\n\nclass ResolveError(DvcException):\n    pass\n\n\nclass EntryNotFound(DvcException):\n    pass\n\n\ndef _format_preamble(msg, path, spacing=\" \"):\n    return f\"failed to parse {msg} in '{path}':{spacing}\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.find_dvc_dir_Repo._ignore.self_scm_ignore_list_flis": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.find_dvc_dir_Repo._ignore.self_scm_ignore_list_flis", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 241, "end_line": 265, "span_ids": ["Repo.find_dvc_dir", "Repo._ignore", "Repo.init", "Repo.unprotect"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    @classmethod\n    def find_dvc_dir(cls, root=None):\n        root_dir = cls.find_root(root)\n        return os.path.join(root_dir, cls.DVC_DIR)\n\n    @staticmethod\n    def init(root_dir=os.curdir, no_scm=False, force=False, subdir=False):\n        from dvc.repo.init import init\n\n        init(root_dir=root_dir, no_scm=no_scm, force=force, subdir=subdir)\n        return Repo(root_dir)\n\n    def unprotect(self, target):\n        return self.cache.local.tree.unprotect(PathInfo(target))\n\n    def _ignore(self):\n        flist = [\n            self.config.files[\"local\"],\n            self.tmp_dir,\n        ]\n\n        if path_isin(self.cache.local.cache_dir, self.root_dir):\n            flist += [self.cache.local.cache_dir]\n\n        self.scm.ignore_list(flist)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/checkout.py__collect_pairs__collect_pairs.return.pairs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/checkout.py__collect_pairs__collect_pairs.return.pairs", "embedding": null, "metadata": {"file_path": "dvc/repo/checkout.py", "file_name": "checkout.py", "file_type": "text/x-python", "category": "implementation", "start_line": 46, "end_line": 71, "span_ids": ["_collect_pairs"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _collect_pairs(\n    self: \"Repo\", targets, with_deps: bool, recursive: bool\n) -> Set[\"StageInfo\"]:\n    from dvc.stage.exceptions import (\n        StageFileBadNameError,\n        StageFileDoesNotExistError,\n    )\n\n    pairs: Set[\"StageInfo\"] = set()\n    for target in targets:\n        try:\n            pairs.update(\n                self.stage.collect_granular(\n                    target, with_deps=with_deps, recursive=recursive\n                )\n            )\n        except (\n            StageFileDoesNotExistError,\n            StageFileBadNameError,\n            NoOutputOrStageError,\n        ) as exc:\n            if not target:\n                raise\n            raise CheckoutErrorSuggestGit(target) from exc\n\n    return pairs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/graph.py_from_typing_import_TYPE_C_collect_inside_path.return._stage_for_stage_in_stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/graph.py_from_typing_import_TYPE_C_collect_inside_path.return._stage_for_stage_in_stage", "embedding": null, "metadata": {"file_path": "dvc/repo/graph.py", "file_name": "graph.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 52, "span_ids": ["imports", "get_pipelines", "check_acyclic", "collect_inside_path", "get_pipeline", "collect_pipeline"], "tokens": 325}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from typing import TYPE_CHECKING, Iterator, List, Set\n\nfrom dvc.utils.fs import path_isin\n\nif TYPE_CHECKING:\n    from networkx import DiGraph\n\n    from dvc.stage import Stage\n\n\ndef check_acyclic(graph: \"DiGraph\") -> None:\n    import networkx as nx\n\n    from dvc.exceptions import CyclicGraphError\n\n    try:\n        edges = nx.find_cycle(graph, orientation=\"original\")\n    except nx.NetworkXNoCycle:\n        return\n\n    stages: Set[\"Stage\"] = set()\n    for from_node, to_node, _ in edges:\n        stages.add(from_node)\n        stages.add(to_node)\n\n    raise CyclicGraphError(list(stages))\n\n\ndef get_pipeline(pipelines, node):\n    found = [i for i in pipelines if i.has_node(node)]\n    assert len(found) == 1\n    return found[0]\n\n\ndef get_pipelines(G):\n    import networkx as nx\n\n    return [G.subgraph(c).copy() for c in nx.weakly_connected_components(G)]\n\n\ndef collect_pipeline(stage: \"Stage\", graph: \"DiGraph\") -> Iterator[\"Stage\"]:\n    import networkx as nx\n\n    pipeline = get_pipeline(get_pipelines(graph), stage)\n    return nx.dfs_postorder_nodes(pipeline, stage)\n\n\ndef collect_inside_path(path: str, graph: \"DiGraph\") -> List[\"Stage\"]:\n    import networkx as nx\n\n    stages = nx.dfs_postorder_nodes(graph)\n    return [stage for stage in stages if path_isin(stage.path, path)]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_fnmatch__maybe_collect_from_dvc_yaml.return._collect_with_deps_stages": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_fnmatch__maybe_collect_from_dvc_yaml.return._collect_with_deps_stages", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["_maybe_collect_from_dvc_yaml", "impl:4", "_collect_with_deps", "imports", "StageInfo"], "tokens": 369}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import fnmatch\nimport logging\nimport os\nimport typing\nfrom contextlib import suppress\nfrom typing import Iterable, List, NamedTuple, Optional, Set, Tuple\n\nfrom dvc.dvcfile import PIPELINE_FILE, Dvcfile, is_valid_filename\nfrom dvc.exceptions import (\n    DvcException,\n    NoOutputOrStageError,\n    OutputNotFoundError,\n)\nfrom dvc.path_info import PathInfo\nfrom dvc.repo.graph import collect_inside_path, collect_pipeline\nfrom dvc.stage.exceptions import StageFileDoesNotExistError, StageNotFound\nfrom dvc.utils import parse_target, relpath\n\nlogger = logging.getLogger(__name__)\n\nif typing.TYPE_CHECKING:\n    from networkx import DiGraph\n\n    from dvc.repo import Repo\n    from dvc.stage import Stage\n    from dvc.stage.loader import StageLoader\n    from dvc.types import OptStr\n\n\nclass StageInfo(NamedTuple):\n    stage: \"Stage\"\n    filter_info: Optional[PathInfo] = None\n\n\nStageList = List[\"Stage\"]\nStageIter = Iterable[\"Stage\"]\nStageSet = Set[\"Stage\"]\n\n\ndef _collect_with_deps(stages: StageList, graph: \"DiGraph\") -> StageSet:\n    res: StageSet = set()\n    for stage in stages:\n        res.update(collect_pipeline(stage, graph=graph))\n    return res\n\n\ndef _maybe_collect_from_dvc_yaml(\n    loader: \"StageLoad\", target, with_deps: bool, **load_kwargs,\n) -> StageIter:\n\n    stages: StageList = []\n    if loader.tree.exists(PIPELINE_FILE):\n        with suppress(StageNotFound):\n            stages = loader.load_all(PIPELINE_FILE, target, **load_kwargs)\n    return _collect_with_deps(stages, loader.graph) if with_deps else stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py__collect_specific_target__collect_specific_target.return._file_name": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py__collect_specific_target__collect_specific_target.return._file_name", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 54, "end_line": 81, "span_ids": ["_collect_specific_target"], "tokens": 289}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _collect_specific_target(\n    loader: \"StageLoad\",\n    target: str,\n    with_deps: bool,\n    recursive: bool,\n    accept_group: bool,\n) -> Tuple[StageIter, \"OptStr\", \"OptStr\"]:\n    # Optimization: do not collect the graph for a specific target\n    file, name = parse_target(target)\n\n    # if the target has a file, we can load directly from it.\n    if not file:\n        # but, if there's no file, parsing is ambiguous as it can be a\n        # stage name in `dvc.yaml` file or an output. We prioritize\n        # `dvc.yaml` stage name here. If it exists, then we move on.\n        # else, we assume it's a output name in the `collect_granular()` below\n        msg = \"Checking if stage '%s' is in '%s'\"\n        logger.debug(msg, target, PIPELINE_FILE)\n        if not (recursive and loader.tree.isdir(target)):\n            stages = _maybe_collect_from_dvc_yaml(\n                loader, target, with_deps, accept_group=accept_group,\n            )\n            if stages:\n                return stages, file, name\n    elif not with_deps and is_valid_filename(file):\n        stages = loader.load_all(file, name, accept_group=accept_group)\n        return stages, file, name\n    return [], file, name", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad_StageLoad._get_keys.return._name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad_StageLoad._get_keys.return._name_", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 84, "end_line": 143, "span_ids": ["StageLoad.from_target", "StageLoad.__init__", "StageLoad._get_group_keys", "StageLoad.get_target", "StageLoad._get_filepath", "StageLoad", "StageLoad._get_keys"], "tokens": 410}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoad:\n    def __init__(self, repo: \"Repo\") -> None:\n        self.repo = repo\n\n    def from_target(\n        self, target: str, accept_group: bool = False, glob: bool = False,\n    ) -> StageList:\n        \"\"\"\n        Returns a list of stage from the provided target.\n        (see load method below for further details)\n        \"\"\"\n        path, name = parse_target(target, isa_glob=glob)\n        return self.load_all(\n            path=path, name=name, accept_group=accept_group, glob=glob,\n        )\n\n    def get_target(self, target: str) -> \"Stage\":\n        \"\"\"\n        Returns a stage from the provided target.\n        (see load_one method for further details)\n        \"\"\"\n        path, name = parse_target(target)\n        return self.load_one(path=path, name=name)\n\n    @staticmethod\n    def _get_filepath(path: str = None, name: str = None) -> str:\n        if path:\n            return path\n\n        path = PIPELINE_FILE\n        logger.debug(\"Assuming '%s' to be a stage inside '%s'\", name, path)\n        return path\n\n    @staticmethod\n    def _get_group_keys(stages: \"StageLoader\", group: str) -> Iterable[str]:\n        from dvc.parsing import JOIN\n\n        for key in stages:\n            assert isinstance(key, str)\n            if key.startswith(f\"{group}{JOIN}\"):\n                yield key\n\n    def _get_keys(\n        self,\n        stages: \"StageLoader\",\n        name: str = None,\n        accept_group: bool = False,\n        glob: bool = False,\n    ) -> Iterable[str]:\n\n        assert not (accept_group and glob)\n\n        if not name:\n            return stages.keys()\n\n        if accept_group and stages.is_foreach_generated(name):\n            return self._get_group_keys(stages, name)\n        elif glob:\n            return fnmatch.filter(stages.keys(), name)\n        return [name]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.load_all_StageLoad.load_all.return._stages_key_for_key_in_k": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.load_all_StageLoad.load_all.return._stages_key_for_key_in_k", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 145, "end_line": 175, "span_ids": ["StageLoad.load_all"], "tokens": 276}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoad:\n\n    def load_all(\n        self,\n        path: str = None,\n        name: str = None,\n        accept_group: bool = False,\n        glob: bool = False,\n    ) -> StageList:\n        \"\"\"Load a list of stages from a file.\n\n        Args:\n            path: if not provided, default `dvc.yaml` is assumed.\n            name: required for `dvc.yaml` files, ignored for `.dvc` files.\n            accept_group: if true, all of the the stages generated from `name`\n                foreach are returned.\n            glob: if true, `name` is considered as a glob, which is\n                used to filter list of stages from the given `path`.\n        \"\"\"\n        from dvc.stage.loader import SingleStageLoader, StageLoader\n\n        path = self._get_filepath(path, name)\n        dvcfile = Dvcfile(self.repo, path)\n        # `dvcfile.stages` is not cached\n        stages = dvcfile.stages  # type: ignore\n\n        if isinstance(stages, SingleStageLoader):\n            stage = stages[name]\n            return [stage]\n\n        assert isinstance(stages, StageLoader)\n        keys = self._get_keys(stages, name, accept_group, glob)\n        return [stages[key] for key in keys]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.load_one_StageLoad.graph.return.self_repo_graph": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.load_one_StageLoad.graph.return.self_repo_graph", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 177, "end_line": 205, "span_ids": ["StageLoad.load_one", "StageLoad.load_file", "StageLoad.graph", "StageLoad.load_glob", "StageLoad.tree"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoad:\n\n    def load_one(self, path: str = None, name: str = None) -> \"Stage\":\n        \"\"\"Load a single stage from a file.\n\n        Args:\n            path: if not provided, default `dvc.yaml` is assumed.\n            name: required for `dvc.yaml` files, ignored for `.dvc` files.\n        \"\"\"\n        path = self._get_filepath(path, name)\n        dvcfile = Dvcfile(self.repo, path)\n\n        stages = dvcfile.stages  # type: ignore\n\n        return stages[name]\n\n    def load_file(self, path: str = None) -> StageList:\n        \"\"\"Load all of the stages from a file.\"\"\"\n        return self.load_all(path)\n\n    def load_glob(self, path: str, expr: str = None):\n        \"\"\"Load stages from `path`, filtered with `expr` provided.\"\"\"\n        return self.load_all(path, expr, glob=True)\n\n    @property\n    def tree(self):\n        return self.repo.tree\n\n    @property\n    def graph(self) -> \"DiGraph\":\n        return self.repo.graph", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.collect_StageLoad.collect.return._collect_with_deps_stages": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.collect_StageLoad.collect.return._collect_with_deps_stages", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 207, "end_line": 257, "span_ids": ["StageLoad.collect"], "tokens": 520}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoad:\n\n    def collect(\n        self,\n        target: str = None,\n        with_deps: bool = False,\n        recursive: bool = False,\n        graph: \"DiGraph\" = None,\n        accept_group: bool = False,\n        glob: bool = False,\n    ) -> StageIter:\n        \"\"\"Collect list of stages from the provided target.\n\n        Args:\n            target: if not provided, all of the stages in the graph are\n                returned.\n                Target can be:\n                - a stage name in the `dvc.yaml` file.\n                - a path to `dvc.yaml` or `.dvc` file.\n                - in case of a stage to a dvc.yaml file in a different\n                  directory than current working directory, it can be a path\n                  to dvc.yaml file, followed by a colon `:`, followed by stage\n                  name (eg: `../dvc.yaml:build`).\n                - in case of `recursive`, it can be a path to a directory.\n                - in case of `accept_group`, it can be a group name of\n                    `foreach` generated stage.\n                - in case of `glob`, it can be a wildcard pattern to match\n                  stages. Example: `build*` for stages in `dvc.yaml` file, or\n                  `../dvc.yaml:build*` for stages in dvc.yaml in a different\n                  directory.\n                  Note that, glob only applies for the stage name, not to the\n                  file, so `**/dvc.yaml:build*` is not possible.\n            with_deps: if true, the stages including their dependencies are\n                returned.\n            recursive: if true and if `target` is a directory, all of the\n                stages inside that directory is returned.\n            graph: graph to use. Defaults to `repo.graph`.\n            accept_group: if true, all of the `foreach` generated stages of\n                the specified target is returned.\n            glob: Use `target` as a pattern to match stages in a file.\n        \"\"\"\n        if not target:\n            return list(graph) if graph else self.repo.stages\n\n        if recursive and self.repo.tree.isdir(target):\n            path = os.path.abspath(target)\n            return collect_inside_path(path, graph or self.graph)\n\n        stages = self.from_target(target, accept_group=accept_group, glob=glob)\n        if not with_deps:\n            return stages\n\n        return _collect_with_deps(stages, graph or self.graph)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py__Manages_Git__logger.logging_getLogger___name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py__Manages_Git__logger.logging_getLogger___name_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 26, "span_ids": ["docstring"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Manages Git.\"\"\"\n\nimport logging\nimport os\nimport shlex\nfrom collections import OrderedDict\nfrom contextlib import contextmanager\nfrom functools import partialmethod\nfrom typing import Iterable, List, Optional, Set\n\nfrom funcy import cached_property, first\nfrom pathspec.patterns import GitWildMatchPattern\n\nfrom dvc.exceptions import GitHookAlreadyExistsError\nfrom dvc.scm.base import Base, FileNotInRepoError, RevError\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import path_isin\nfrom dvc.utils.serialize import modify_yaml\n\nfrom .backend.base import NoGitBackendError\nfrom .backend.dulwich import DulwichBackend\nfrom .backend.gitpython import GitPythonBackend\nfrom .backend.pygit2 import Pygit2Backend\nfrom .stash import Stash\n\nlogger = logging.getLogger(__name__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.install_Git.install.with_modify_yaml_config_p.if_entry_not_in_config_r.config_repos_append_en": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.install_Git.install.with_modify_yaml_config_p.if_entry_not_in_config_r.config_repos_append_en", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 331, "end_line": 367, "span_ids": ["Git.install"], "tokens": 251}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    def install(self, use_pre_commit_tool=False):\n        self._install_merge_driver()\n\n        if not use_pre_commit_tool:\n            self._verify_dvc_hooks()\n            self._install_hook(\"post-checkout\")\n            self._install_hook(\"pre-commit\")\n            self._install_hook(\"pre-push\")\n            return\n\n        config_path = os.path.join(self.root_dir, \".pre-commit-config.yaml\")\n        with modify_yaml(config_path) as config:\n            entry = {\n                \"repo\": \"https://github.com/iterative/dvc\",\n                \"rev\": \"master\",\n                \"hooks\": [\n                    {\n                        \"id\": \"dvc-pre-commit\",\n                        \"language_version\": \"python3\",\n                        \"stages\": [\"commit\"],\n                    },\n                    {\n                        \"id\": \"dvc-pre-push\",\n                        \"language_version\": \"python3\",\n                        \"stages\": [\"push\"],\n                    },\n                    {\n                        \"id\": \"dvc-post-checkout\",\n                        \"language_version\": \"python3\",\n                        \"stages\": [\"post-checkout\"],\n                        \"always_run\": True,\n                    },\n                ],\n            }\n\n            if entry not in config[\"repos\"]:\n                config[\"repos\"].append(entry)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.detach_head_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.detach_head_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 371, "end_line": 421, "span_ids": ["Git.stash_workspace", "Git.detach_head"], "tokens": 345}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    @contextmanager\n    def detach_head(self, rev: Optional[str] = None):\n        \"\"\"Context manager for performing detached HEAD SCM operations.\n\n        Detaches and restores HEAD similar to interactive git rebase.\n        Restore is equivalent to 'reset --soft', meaning the caller is\n        is responsible for preserving & restoring working tree state\n        (i.e. via stash) when applicable.\n\n        Yields revision of detached head.\n        \"\"\"\n        if not rev:\n            rev = \"HEAD\"\n        orig_head = self.get_ref(\"HEAD\", follow=False)\n        logger.debug(\"Detaching HEAD at '%s'\", rev)\n        self.checkout(rev, detach=True)\n        try:\n            yield self.get_ref(\"HEAD\")\n        finally:\n            prefix = self.LOCAL_BRANCH_PREFIX\n            if orig_head.startswith(prefix):\n                symbolic = True\n                name = orig_head[len(prefix) :]\n            else:\n                symbolic = False\n                name = orig_head\n            self.set_ref(\n                \"HEAD\",\n                orig_head,\n                symbolic=symbolic,\n                message=f\"dvc: Restore HEAD to '{name}'\",\n            )\n            logger.debug(\"Restore HEAD to '%s'\", name)\n            self.reset()\n\n    @contextmanager\n    def stash_workspace(self, **kwargs):\n        \"\"\"Stash and restore any workspace changes.\n\n        Yields revision of the stash commit. Yields None if there were no\n        changes to stash.\n        \"\"\"\n        logger.debug(\"Stashing workspace\")\n        rev = self.stash.push(**kwargs)\n        try:\n            yield rev\n        finally:\n            if rev:\n                logger.debug(\"Restoring stashed workspace\")\n                self.stash.pop()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.get_ref_BaseGitBackend.get_refs_containing._Iterate_over_all_git_r": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.get_ref_BaseGitBackend.get_refs_containing._Iterate_over_all_git_r", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 153, "end_line": 188, "span_ids": ["BaseGitBackend.remove_ref", "BaseGitBackend.iter_refs", "BaseGitBackend.get_ref", "BaseGitBackend.get_refs_containing", "BaseGitBackend.iter_remote_refs"], "tokens": 281}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def get_ref(\n        self, name: str, follow: Optional[bool] = True\n    ) -> Optional[str]:\n        \"\"\"Return the value of specified ref.\n\n        If follow is false, symbolic refs will not be dereferenced.\n        Returns None if the ref does not exist.\n        \"\"\"\n\n    @abstractmethod\n    def remove_ref(self, name: str, old_ref: Optional[str] = None):\n        \"\"\"Remove the specified git ref.\n\n        If old_ref is specified, ref will only be removed if it currently\n        equals old_ref.\n        \"\"\"\n\n    @abstractmethod\n    def iter_refs(self, base: Optional[str] = None):\n        \"\"\"Iterate over all refs in this git repo.\n\n        If base is specified, only refs which begin with base will be yielded.\n        \"\"\"\n\n    @abstractmethod\n    def iter_remote_refs(self, url: str, base: Optional[str] = None):\n        \"\"\"Iterate over all refs in the specified remote Git repo.\n\n        If base is specified, only refs which begin with base will be yielded.\n        URL can be a named Git remote or URL.\n        \"\"\"\n\n    @abstractmethod\n    def get_refs_containing(self, rev: str, pattern: Optional[str] = None):\n        \"\"\"Iterate over all git refs containing the specfied revision.\"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.push_refspec_BaseGitBackend.push_refspec._Push_refspec_to_a_remo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.push_refspec_BaseGitBackend.push_refspec._Push_refspec_to_a_remo", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 190, "end_line": 214, "span_ids": ["BaseGitBackend.push_refspec"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def push_refspec(\n        self,\n        url: str,\n        src: Optional[str],\n        dest: str,\n        force: bool = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        \"\"\"Push refspec to a remote Git repo.\n\n        Args:\n            url: Git remote name or absolute Git URL.\n            src: Local refspec. If src ends with \"/\" it will be treated as a\n                prefix, and all refs inside src will be pushed using dest\n                as destination refspec prefix. If src is None, dest will be\n                deleted from the remote.\n            dest: Remote refspec.\n            force: If True, remote refs will be overwritten.\n            on_diverged: Callback function which will be called if local ref\n                and remote have diverged and force is False. If the callback\n                returns True the remote ref will be overwritten.\n                Callback will be of the form:\n                    on_diverged(local_refname, remote_sha)\n        \"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.fetch_refspecs_BaseGitBackend.fetch_refspecs._Fetch_refspecs_from_a_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.fetch_refspecs_BaseGitBackend.fetch_refspecs._Fetch_refspecs_from_a_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 216, "end_line": 237, "span_ids": ["BaseGitBackend.fetch_refspecs"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def fetch_refspecs(\n        self,\n        url: str,\n        refspecs: Iterable[str],\n        force: Optional[bool] = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        \"\"\"Fetch refspecs from a remote Git repo.\n\n        Args:\n            url: Remote repo Git URL (Note this must be a Git URL and not\n                a remote name).\n            refspecs: Iterable containing refspecs to fetch.\n                Note that this will not match subkeys.\n            force: If True, local refs will be overwritten.\n            on_diverged: Callback function which will be called if local ref\n                and remote have diverged and force is False. If the callback\n                returns True the local ref will be overwritten.\n                Callback will be of the form:\n                    on_diverged(local_refname, remote_sha)\n        \"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.set_ref_DulwichBackend.set_ref.if_not_self_repo_refs_set.raise_SCMError_f_Failed_t": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.set_ref_DulwichBackend.set_ref.if_not_self_repo_refs_set.raise_SCMError_f_Failed_t", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 227, "end_line": 246, "span_ids": ["DulwichBackend.set_ref"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def set_ref(\n        self,\n        name: str,\n        new_ref: str,\n        old_ref: Optional[str] = None,\n        message: Optional[str] = None,\n        symbolic: Optional[bool] = False,\n    ):\n        name_b = os.fsencode(name)\n        new_ref_b = os.fsencode(new_ref)\n        old_ref_b = os.fsencode(old_ref) if old_ref else None\n        message_b = message.encode(\"utf-8\") if message else None\n        if symbolic:\n            return self.repo.refs.set_symbolic_ref(\n                name_b, new_ref_b, message=message_b\n            )\n        if not self.repo.refs.set_if_equals(\n            name_b, old_ref_b, new_ref_b, message=message_b\n        ):\n            raise SCMError(f\"Failed to set '{name}'\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.fetch_refspecs_DulwichBackend.fetch_refspecs.for_lh_rh___in_fetch_.self_repo_refs_rh_fetc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.fetch_refspecs_DulwichBackend.fetch_refspecs.for_lh_rh___in_fetch_.self_repo_refs_rh_fetc", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 392, "end_line": 463, "span_ids": ["DulwichBackend.fetch_refspecs"], "tokens": 471}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def fetch_refspecs(\n        self,\n        url: str,\n        refspecs: Iterable[str],\n        force: Optional[bool] = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        from dulwich.client import get_transport_and_path\n        from dulwich.objectspec import parse_reftuples\n        from dulwich.porcelain import (\n            DivergedBranches,\n            check_diverged,\n            get_remote_repo,\n        )\n\n        fetch_refs = []\n\n        def determine_wants(remote_refs):\n            fetch_refs.extend(\n                parse_reftuples(\n                    remote_refs,\n                    self.repo.refs,\n                    [os.fsencode(refspec) for refspec in refspecs],\n                    force=force,\n                )\n            )\n            return [\n                remote_refs[lh]\n                for (lh, _, _) in fetch_refs\n                if remote_refs[lh] not in self.repo.object_store\n            ]\n\n        try:\n            _remote, location = get_remote_repo(self.repo, url)\n            client, path = get_transport_and_path(location)\n        except Exception as exc:\n            raise SCMError(\n                f\"'{url}' is not a valid Git remote or URL\"\n            ) from exc\n\n        with Tqdm(\n            desc=\"Fetching git refs\", bar_format=self.BAR_FMT_NOTOTAL\n        ) as pbar:\n\n            def progress(msg_b):\n                msg = msg_b.decode(\"ascii\").strip()\n                pbar.update_msg(msg)\n                pbar.refresh()\n                logger.trace(msg)\n\n            fetch_result = client.fetch(\n                path,\n                self.repo,\n                progress=progress,\n                determine_wants=determine_wants,\n            )\n        for (lh, rh, _) in fetch_refs:\n            try:\n                if rh in self.repo.refs:\n                    check_diverged(\n                        self.repo, self.repo.refs[rh], fetch_result.refs[lh]\n                    )\n            except DivergedBranches:\n                if not force:\n                    overwrite = False\n                    if on_diverged:\n                        overwrite = on_diverged(\n                            os.fsdecode(rh), os.fsdecode(fetch_result.refs[lh])\n                        )\n                    if not overwrite:\n                        continue\n            self.repo.refs[rh] = fetch_result.refs[lh]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py__git_stash_convenience__Stash.list.return.list_iter_self_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py__git_stash_convenience__Stash.list.return.list_iter_self_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/stash.py", "file_name": "stash.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 32, "span_ids": ["Stash.__len__", "Stash.__iter__", "Stash", "Stash.list", "Stash.__getitem__", "docstring", "Stash.__init__"], "tokens": 163}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"git stash convenience wrapper.\"\"\"\n\nimport logging\nimport os\nfrom typing import Optional\n\nfrom dvc.scm.base import SCMError\nfrom dvc.utils.fs import remove\n\nlogger = logging.getLogger(__name__)\n\n\nclass Stash:\n    \"\"\"Wrapper for representing any arbitrary Git stash ref.\"\"\"\n\n    DEFAULT_STASH = \"refs/stash\"\n\n    def __init__(self, scm, ref: Optional[str] = None):\n        self.ref = ref if ref else self.DEFAULT_STASH\n        self.scm = scm\n\n    def __iter__(self):\n        yield from self.scm._stash_iter(self.ref)\n\n    def __len__(self):\n        return len(self.list())\n\n    def __getitem__(self, index):\n        return self.list()[index]\n\n    def list(self):\n        return list(iter(self))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py_Stash.drop_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py_Stash.drop_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/stash.py", "file_name": "stash.py", "file_type": "text/x-python", "category": "implementation", "start_line": 61, "end_line": 80, "span_ids": ["Stash.drop", "Stash.clear"], "tokens": 192}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stash:\n\n    def drop(self, index: int = 0):\n        ref = \"{0}@{{{1}}}\".format(self.ref, index)\n        if index < 0 or index >= len(self):\n            raise SCMError(f\"Invalid stash ref '{ref}'\")\n        logger.debug(\"Dropping '%s'\", ref)\n        self.scm.reflog_delete(ref, updateref=True, rewrite=True)\n\n        # if we removed the last reflog entry, delete the ref and reflog\n        if len(self) == 0:\n            self.scm.remove_ref(self.ref)\n            parts = self.ref.split(\"/\")\n            reflog = os.path.join(self.scm.root_dir, \".git\", \"logs\", *parts)\n            if os.path.exists(reflog):\n                remove(reflog)\n\n    def clear(self):\n        logger.debug(\"Clear stash '%s'\", self.ref)\n        for _ in range(len(self)):\n            self.drop()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_logging_INVALID_STAGENAME_CHARS.set_string_punctuation_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_logging_INVALID_STAGENAME_CHARS.set_string_punctuation_", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 41, "span_ids": ["imports"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport string\nfrom collections import defaultdict\nfrom dataclasses import dataclass\nfrom typing import Optional\n\nfrom funcy import cached_property, project\n\nimport dvc.dependency as dependency\nimport dvc.prompt as prompt\nfrom dvc.exceptions import (\n    CacheLinkError,\n    CheckoutError,\n    DvcException,\n    MergeError,\n)\nfrom dvc.output.base import OutputDoesNotExistError\nfrom dvc.utils import relpath\n\nfrom . import params\nfrom .decorators import rwlocked\nfrom .exceptions import StageUpdateError\nfrom .imports import sync_import, update_import\nfrom .run import run_stage\nfrom .utils import (\n    check_circular_dependency,\n    check_duplicated_arguments,\n    check_missing_outputs,\n    check_no_externals,\n    check_stage_path,\n    compute_md5,\n    fill_stage_dependencies,\n    fill_stage_outputs,\n    get_dump,\n    stage_dump_eq,\n)\n\nlogger = logging.getLogger(__name__)\n# Disallow all punctuation characters except hyphen and underscore\nINVALID_STAGENAME_CHARS = set(string.punctuation) - {\"_\", \"-\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_loads_from_RawData.generated_from.None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_loads_from_RawData.generated_from.None", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 44, "end_line": 69, "span_ids": ["RawData", "loads_from"], "tokens": 130}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def loads_from(cls, repo, path, wdir, data):\n    kw = {\n        \"repo\": repo,\n        \"path\": path,\n        \"wdir\": wdir,\n        **project(\n            data,\n            [\n                Stage.PARAM_CMD,\n                Stage.PARAM_LOCKED,\n                Stage.PARAM_FROZEN,\n                Stage.PARAM_ALWAYS_CHANGED,\n                Stage.PARAM_MD5,\n                Stage.PARAM_DESC,\n                Stage.PARAM_META,\n                \"name\",\n            ],\n        ),\n    }\n    return cls(**kw)\n\n\n@dataclass\nclass RawData:\n    parametrized: bool = False\n    generated_from: Optional[str] = None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.update_Stage.reload.return.self_dvcfile_stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.update_Stage.reload.return.self_dvcfile_stage", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 366, "end_line": 388, "span_ids": ["Stage.can_be_skipped", "Stage.reload", "Stage.update"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    def update(self, rev=None):\n        if not (self.is_repo_import or self.is_import):\n            raise StageUpdateError(self.relpath)\n        update_import(self, rev=rev)\n\n    @property\n    def can_be_skipped(self):\n        if not self.dvcfile.exists():\n            return False\n\n        has_persist_outs = any(out.persist for out in self.outs)\n        if has_persist_outs:\n            logger.warning(\"Build cache is ignored when persisting outputs.\")\n            return False\n\n        if self.is_cached and not self.is_callback and not self.always_changed:\n            logger.info(\"Stage is cached, skipping\")\n            return True\n\n        return False\n\n    def reload(self):\n        return self.dvcfile.stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.is_cached_Stage.is_cached.return.True": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_Stage.is_cached_Stage.is_cached.return.True", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 390, "end_line": 414, "span_ids": ["Stage.is_cached"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stage(params.StageParams):\n    # pylint:disable=no-value-for-parameter\n\n    @property\n    def is_cached(self):\n        \"\"\"Checks if this stage has been already ran and stored\"\"\"\n        old = self.reload()\n        if old.changed_outs():\n            return False\n\n        # NOTE: need to save checksums for deps in order to compare them\n        # with what is written in the old stage.\n        self.save_deps()\n        if not stage_dump_eq(Stage, old.dumpd(), self.dumpd()):\n            return False\n\n        # NOTE: committing to prevent potential data duplication. For example\n        #\n        #    $ dvc config cache.type hardlink\n        #    $ echo foo > foo\n        #    $ dvc add foo\n        #    $ rm -f foo\n        #    $ echo foo > foo\n        #    $ dvc add foo # should replace foo with a link to cache\n        #\n        old.commit()\n\n        return True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader.__getitem___StageLoader.is_foreach_generated.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader.__getitem___StageLoader.is_foreach_generated.return._", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 106, "end_line": 151, "span_ids": ["StageLoader.__len__", "StageLoader.__contains__", "StageLoader.__getitem__", "StageLoader.is_foreach_generated", "StageLoader.__iter__"], "tokens": 336}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoader(Mapping):\n\n    def __getitem__(self, name):\n        if not name:\n            raise StageNameUnspecified(self.dvcfile)\n\n        try:\n            resolved_data = self.resolver.resolve_one(name)\n        except EntryNotFound:\n            raise StageNotFound(self.dvcfile, name)\n\n        if self.lockfile_data and name not in self.lockfile_data:\n            self.lockfile_needs_update()\n            logger.trace(  # type: ignore[attr-defined]\n                \"No lock entry found for '%s:%s'\", self.dvcfile.relpath, name,\n            )\n\n        resolved_stage = resolved_data[name]\n        stage = self.load_stage(\n            self.dvcfile,\n            name,\n            resolved_stage,\n            self.lockfile_data.get(name, {}),\n        )\n\n        stage.tracked_vars = self.resolver.tracked_vars.get(name, {})\n        group, *keys = name.rsplit(JOIN, maxsplit=1)\n        if group and keys and name not in self.stages_data:\n            stage.raw_data.generated_from = group\n\n        stage.raw_data.parametrized = (\n            self.stages_data.get(name, {}) != resolved_stage\n        )\n        return stage\n\n    def __iter__(self):\n        return iter(self.resolver.get_keys())\n\n    def __len__(self):\n        return len(self.resolver.get_keys())\n\n    def __contains__(self, name):\n        return self.resolver.has_key(name)  # noqa: W601\n\n    def is_foreach_generated(self, name: str):\n        return (\n            name in self.stages_data and FOREACH_KWD in self.stages_data[name]\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_to_single_stage_lockfile_to_single_stage_lockfile.return.res": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_to_single_stage_lockfile_to_single_stage_lockfile.return.res", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 144, "end_line": 172, "span_ids": ["to_single_stage_lockfile"], "tokens": 182}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def to_single_stage_lockfile(stage: \"Stage\") -> dict:\n    assert stage.cmd\n\n    def _dumpd(item):\n        ret = [\n            (item.PARAM_PATH, item.def_path),\n            *item.hash_info.to_dict().items(),\n        ]\n\n        if item.isexec:\n            ret.append((item.PARAM_ISEXEC, True))\n\n        return OrderedDict(ret)\n\n    res = OrderedDict([(\"cmd\", stage.cmd)])\n    params, deps = split_params_deps(stage)\n    deps, outs = [\n        [_dumpd(item) for item in sort_by_path(items)]\n        for items in [deps, stage.outs]\n    ]\n    params = _serialize_params_values(params)\n    if deps:\n        res[PARAM_DEPS] = deps\n    if params:\n        res[PARAM_PARAMS] = params\n    if outs:\n        res[PARAM_OUTS] = outs\n\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_to_lockfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/serialize.py_to_lockfile_", "embedding": null, "metadata": {"file_path": "dvc/stage/serialize.py", "file_name": "serialize.py", "file_type": "text/x-python", "category": "implementation", "start_line": 172, "end_line": 192, "span_ids": ["to_single_stage_file", "to_lockfile"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def to_lockfile(stage: \"PipelineStage\") -> dict:\n    assert stage.name\n    return {stage.name: to_single_stage_lockfile(stage)}\n\n\ndef to_single_stage_file(stage: \"Stage\"):\n    state = stage.dumpd()\n\n    # When we load a stage we parse yaml with a fast parser, which strips\n    # off all the comments and formatting. To retain those on update we do\n    # a trick here:\n    # - reparse the same yaml text with a slow but smart ruamel yaml parser\n    # - apply changes to a returned structure\n    # - serialize it\n    text = stage._stage_text  # noqa, pylint: disable=protected-access\n    if text is not None:\n        saved_state = parse_yaml_for_update(text, stage.path)\n        apply_diff(state, saved_state)\n        state = saved_state\n    return state", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_resolve_paths_error_link.return.format_link_f_https_err": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_resolve_paths_error_link.return.format_link_f_https_err", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 362, "end_line": 410, "span_ids": ["error_link", "format_link", "resolve_paths"], "tokens": 353}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def resolve_paths(repo, out):\n    from urllib.parse import urlparse\n\n    from ..dvcfile import DVC_FILE_SUFFIX\n    from ..exceptions import DvcException\n    from ..path_info import PathInfo\n    from ..system import System\n    from .fs import contains_symlink_up_to\n\n    abspath = PathInfo(os.path.abspath(out))\n    dirname = os.path.dirname(abspath)\n    base = os.path.basename(os.path.normpath(out))\n\n    scheme = urlparse(out).scheme\n    if os.name == \"nt\" and scheme == abspath.drive[0].lower():\n        # urlparse interprets windows drive letters as URL scheme\n        scheme = \"\"\n\n    if scheme or not abspath.isin_or_eq(repo.root_dir):\n        wdir = os.getcwd()\n    elif contains_symlink_up_to(dirname, repo.root_dir) or (\n        os.path.isdir(abspath) and System.is_symlink(abspath)\n    ):\n        msg = (\n            \"Cannot add files inside symlinked directories to DVC. \"\n            \"See {} for more information.\"\n        ).format(\n            format_link(\n                \"https://dvc.org/doc/user-guide/troubleshooting#add-symlink\"\n            )\n        )\n        raise DvcException(msg)\n    else:\n        wdir = dirname\n        out = base\n\n    path = os.path.join(wdir, base + DVC_FILE_SUFFIX)\n\n    return (path, wdir, out)\n\n\ndef format_link(link):\n    return \"<{blue}{link}{nc}>\".format(\n        blue=colorama.Fore.CYAN, link=link, nc=colorama.Fore.RESET\n    )\n\n\ndef error_link(name):\n    return format_link(f\"https://error.dvc.org/{name}\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_parse_target_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/utils/__init__.py_parse_target_", "embedding": null, "metadata": {"file_path": "dvc/utils/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 413, "end_line": 479, "span_ids": ["parse_target", "glob_targets", "is_exec"], "tokens": 427}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def parse_target(\n    target: str, default: str = None, isa_glob: bool = False\n) -> Tuple[Optional[str], Optional[str]]:\n    from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK, is_valid_filename\n    from dvc.exceptions import DvcException\n    from dvc.parsing import JOIN\n\n    if not target:\n        return None, None\n\n    default = default or PIPELINE_FILE\n    if isa_glob:\n        path, _, glob = target.rpartition(\":\")\n        return path or default, glob or None\n\n    # look for first \"@\", so as not to assume too much about stage name\n    # eg: it might contain \":\" in a generated stages from dict which might\n    # affect further parsing with the regex.\n    group, _, key = target.partition(JOIN)\n    match = TARGET_REGEX.match(group)\n\n    if not match:\n        return target, None\n\n    path, name = (\n        match.group(\"path\"),\n        match.group(\"name\"),\n    )\n\n    if name and key:\n        name += f\"{JOIN}{key}\"\n\n    if path:\n        if os.path.basename(path) == PIPELINE_LOCK:\n            raise DvcException(\n                \"Did you mean: `{}`?\".format(\n                    target.replace(\".lock\", \".yaml\", 1)\n                )\n            )\n        if not name:\n            ret = (target, None)\n            return ret if is_valid_filename(target) else ret[::-1]\n\n    if not path:\n        logger.trace(  # type: ignore[attr-defined]\n            \"Assuming file to be '%s'\", default\n        )\n\n    return path or default, name\n\n\ndef is_exec(mode):\n    return bool(mode & (stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH))\n\n\ndef glob_targets(targets, glob=True, recursive=True):\n    if not glob:\n        return targets\n\n    from glob import iglob\n\n    return [\n        exp_target\n        for target in targets\n        for exp_target in iglob(target, recursive=recursive)\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_with_cache_link_error_test_add_with_cache_link_error.assert_tmp_dir_dvc_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_with_cache_link_error_test_add_with_cache_link_error.assert_tmp_dir_dvc_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 911, "end_line": 925, "span_ids": ["test_add_with_cache_link_error"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_with_cache_link_error(tmp_dir, dvc, mocker, caplog):\n    tmp_dir.gen(\"foo\", \"foo\")\n\n    mocker.patch.object(\n        dvc.cache.local, \"_do_link\", side_effect=DvcException(\"link failed\")\n    )\n    with caplog.at_level(logging.WARNING, logger=\"dvc\"):\n        dvc.add(\"foo\")\n        assert \"reconfigure cache types\" in caplog.text\n\n    assert not (tmp_dir / \"foo\").exists()\n    assert (tmp_dir / \"foo.dvc\").exists()\n    assert (tmp_dir / \".dvc\" / \"cache\").read_text() == {\n        \"ac\": {\"bd18db4cc2f85cedef654fccc4a4d8\": \"foo\"}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_preserve_meta_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_preserve_meta_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 949, "end_line": 975, "span_ids": ["test_add_preserve_meta"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_add_preserve_meta(tmp_dir, dvc):\n    text = textwrap.dedent(\n        \"\"\"\\\n        # top comment\n        desc: top desc\n        outs:\n        - path: foo # out comment\n          desc: out desc\n        meta: some metadata\n    \"\"\"\n    )\n    tmp_dir.gen(\"foo.dvc\", text)\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert (tmp_dir / \"foo.dvc\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        # top comment\n        desc: top desc\n        outs:\n        - path: foo # out comment\n          desc: out desc\n          md5: acbd18db4cc2f85cedef654fccc4a4d8\n          size: 3\n        meta: some metadata\n    \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_for_external_outputs_test_checkout_for_external_outputs.assert_file_path_read_tex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_for_external_outputs_test_checkout_for_external_outputs.assert_file_path_read_tex", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 756, "end_line": 777, "span_ids": ["test_checkout_for_external_outputs"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace\", [pytest.lazy_fixture(\"s3\")], indirect=True\n)\ndef test_checkout_for_external_outputs(tmp_dir, dvc, workspace):\n    workspace.gen(\"foo\", \"foo\")\n\n    file_path = workspace / \"foo\"\n    dvc.add(\"remote://workspace/foo\")\n\n    remote = dvc.cloud.get_remote(\"workspace\")\n    remote.tree.remove(file_path)\n    assert not file_path.exists()\n\n    stats = dvc.checkout(force=True)\n    assert stats == {**empty_checkout, \"added\": [str(file_path)]}\n    assert file_path.exists()\n\n    workspace.gen(\"foo\", \"foo\\nfoo\")\n\n    stats = dvc.checkout(force=True)\n    assert stats == {**empty_checkout, \"modified\": [str(file_path)]}\n    assert file_path.read_text() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_dir_test_import_url_dir.assert_dvc_status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_dir_test_import_url_dir.assert_dvc_status_", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 146, "end_line": 210, "span_ids": ["test_import_url_dir"], "tokens": 690}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace, stage_md5, dir_md5\",\n    [\n        (\n            pytest.lazy_fixture(\"local_cloud\"),\n            \"dc24e1271084ee317ac3c2656fb8812b\",\n            \"b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\",\n        ),\n        (\n            pytest.lazy_fixture(\"s3\"),\n            \"2aa17f8daa26996b3f7a4cf8888ac9ac\",\n            \"ec602a6ba97b2dd07bd6d2cd89674a60.dir\",\n        ),\n        (\n            pytest.lazy_fixture(\"gs\"),\n            \"dc24e1271084ee317ac3c2656fb8812b\",\n            \"b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\",\n        ),\n        (\n            pytest.lazy_fixture(\"hdfs\"),\n            \"ec0943f83357f702033c98e70b853c8c\",\n            \"e6dcd267966dc628d732874f94ef4280.dir\",\n        ),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            \"dc24e1271084ee317ac3c2656fb8812b\",\n            \"b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\",\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n    ],\n    indirect=[\"workspace\"],\n)\ndef test_import_url_dir(tmp_dir, dvc, workspace, stage_md5, dir_md5):\n    workspace.gen({\"dir\": {\"file\": \"file\", \"subdir\": {\"subfile\": \"subfile\"}}})\n\n    # remove external cache to make sure that we don't need it to import dirs\n    with dvc.config.edit() as conf:\n        del conf[\"cache\"]\n    dvc.cache = Cache(dvc)\n\n    assert not (tmp_dir / \"dir\").exists()  # sanity check\n    dvc.imp_url(\"remote://workspace/dir\")\n    assert set(os.listdir(tmp_dir / \"dir\")) == {\"file\", \"subdir\"}\n    assert (tmp_dir / \"dir\" / \"file\").read_text() == \"file\"\n    assert list(os.listdir(tmp_dir / \"dir\" / \"subdir\")) == [\"subfile\"]\n    assert (tmp_dir / \"dir\" / \"subdir\" / \"subfile\").read_text() == \"subfile\"\n\n    assert (tmp_dir / \"dir.dvc\").read_text() == (\n        f\"md5: {stage_md5}\\n\"\n        \"frozen: true\\n\"\n        \"deps:\\n\"\n        f\"- md5: {dir_md5}\\n\"\n        \"  size: 11\\n\"\n        \"  nfiles: 2\\n\"\n        \"  path: remote://workspace/dir\\n\"\n        \"outs:\\n\"\n        \"- md5: b6dcab6ccd17ca0a8bf4a215a37d14cc.dir\\n\"\n        \"  size: 11\\n\"\n        \"  nfiles: 2\\n\"\n        \"  path: dir\\n\"\n    )\n\n    assert dvc.status() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_preserve_meta_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import_url.py_test_import_url_preserve_meta_", "embedding": null, "metadata": {"file_path": "tests/func/test_import_url.py", "file_name": "test_import_url.py", "file_type": "text/x-python", "category": "test", "start_line": 213, "end_line": 248, "span_ids": ["test_import_url_preserve_meta"], "tokens": 272}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_url_preserve_meta(tmp_dir, dvc):\n    text = textwrap.dedent(\n        \"\"\"\\\n        # top comment\n        desc: top desc\n        deps:\n        - path: foo # dep comment\n        outs:\n        - path: bar # out comment\n          desc: out desc\n        meta: some metadata\n    \"\"\"\n    )\n    tmp_dir.gen(\"bar.dvc\", text)\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    dvc.imp_url(\"foo\", out=\"bar\")\n    assert (tmp_dir / \"bar.dvc\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        # top comment\n        desc: top desc\n        deps:\n        - path: foo # dep comment\n          md5: acbd18db4cc2f85cedef654fccc4a4d8\n          size: 3\n        outs:\n        - path: bar # out comment\n          desc: out desc\n          md5: acbd18db4cc2f85cedef654fccc4a4d8\n          size: 3\n        meta: some metadata\n        md5: be7ade0aa89cc8d56e320867a9de9740\n        frozen: true\n    \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_init.py_test_subdir_init_no_option_test_subdir_init_no_option.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_init.py_test_subdir_init_no_option_test_subdir_init_no_option.assert_", "embedding": null, "metadata": {"file_path": "tests/func/test_init.py", "file_name": "test_init.py", "file_type": "text/x-python", "category": "test", "start_line": 89, "end_line": 103, "span_ids": ["test_subdir_init_no_option"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_subdir_init_no_option(tmp_dir, scm, monkeypatch, caplog):\n    tmp_dir.gen({\"subdir\": {}})\n\n    caplog.clear()\n    with monkeypatch.context() as m:\n        m.chdir(\"subdir\")\n        with caplog.at_level(logging.ERROR, logger=\"dvc\"):\n            assert main([\"init\"]) == 1\n\n    assert (\n        \"{} is not tracked by any supported SCM tool (e.g. Git). \"\n        \"Use `--no-scm` if you don't want to use any SCM or \"\n        \"`--subdir` if initializing inside a subdirectory of a parent SCM \"\n        \"repository.\".format(os.fspath(tmp_dir / \"subdir\"))\n    ) in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_init.py_test_gen_dvcignore_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_init.py_test_gen_dvcignore_", "embedding": null, "metadata": {"file_path": "tests/func/test_init.py", "file_name": "test_init.py", "file_type": "text/x-python", "category": "test", "start_line": 106, "end_line": 128, "span_ids": ["test_gen_dvcignore", "test_init_when_ignored_by_git"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gen_dvcignore(tmp_dir):\n    DvcRepo.init(no_scm=True)\n    text = (\n        \"# Add patterns of files dvc should ignore, which could improve\\n\"\n        \"# the performance. Learn more at\\n\"\n        \"# https://dvc.org/doc/user-guide/dvcignore\\n\"\n    )\n    assert text == (tmp_dir / \".dvcignore\").read_text()\n\n\ndef test_init_when_ignored_by_git(tmp_dir, scm, caplog):\n    # https://github.com/iterative/dvc/issues/3738\n    tmp_dir.gen({\".gitignore\": \".*\"})\n    with caplog.at_level(logging.ERROR, logger=\"dvc\"):\n        assert main([\"init\"]) == 1\n    assert (\n        \"{dvc_dir} is ignored by your SCM tool. \\n\"\n        \"Make sure that it's tracked, \"\n        \"for example, by adding '!.dvc' to .gitignore.\".format(\n            dvc_dir=tmp_dir / DvcRepo.DVC_DIR\n        )\n    ) in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repo.py_from_dvc_cache_import_Cac_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repo.py_from_dvc_cache_import_Cac_", "embedding": null, "metadata": {"file_path": "tests/func/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 53, "span_ids": ["imports", "test_destroy"], "tokens": 355}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.cache import Cache\nfrom dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK\nfrom dvc.system import System\n\n\ndef test_destroy(tmp_dir, dvc, run_copy):\n    dvc.config[\"cache\"][\"type\"] = [\"symlink\"]\n    dvc.cache = Cache(dvc)\n\n    tmp_dir.dvc_gen(\"file\", \"text\")\n    tmp_dir.dvc_gen({\"dir\": {\"file\": \"lorem\", \"subdir/file\": \"ipsum\"}})\n\n    run_copy(\"file\", \"file2\", single_stage=True)\n    run_copy(\"file2\", \"file3\", name=\"copy-file2-file3\")\n    run_copy(\"file3\", \"file4\", name=\"copy-file3-file4\")\n\n    dvc.destroy()\n\n    # Remove all the files related to DVC\n    for path in [\n        \".dvc\",\n        \"file.dvc\",\n        \"file2.dvc\",\n        \"dir.dvc\",\n        PIPELINE_FILE,\n        PIPELINE_LOCK,\n    ]:\n        assert not (tmp_dir / path).exists()\n\n    # Leave the rest of the files\n    for path in [\n        \"file\",\n        \"file2\",\n        \"file3\",\n        \"file4\",\n        \"dir/file\",\n        \"dir/subdir/file\",\n    ]:\n        assert (tmp_dir / path).is_file()\n\n    # Make sure that data was unprotected after `destroy`\n    for path in [\n        \"file\",\n        \"file2\",\n        \"file3\",\n        \"file4\",\n        \"dir\",\n        \"dir/file\",\n        \"dir/subdir\",\n        \"dir/subdir/file\",\n    ]:\n        assert not System.is_symlink(tmp_dir / path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_run_force_preserves_comments_and_meta_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_run_single_stage.py_test_run_force_preserves_comments_and_meta_", "embedding": null, "metadata": {"file_path": "tests/func/test_run_single_stage.py", "file_name": "test_run_single_stage.py", "file_type": "text/x-python", "category": "test", "start_line": 1009, "end_line": 1076, "span_ids": ["test_run_force_preserves_comments_and_meta"], "tokens": 613}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_run_force_preserves_comments_and_meta(tmp_dir, dvc, run_copy):\n    tmp_dir.gen({\"foo\": \"foo\", \"foo1\": \"foo1\"})\n    text = textwrap.dedent(\n        \"\"\"\\\n      desc: top desc\n      cmd: python copy.py foo bar\n      deps:\n      - path: copy.py\n      - path: foo\n      outs:\n      # comment preserved\n      - path: bar\n        desc: out desc\n      meta:\n        name: copy-foo-bar\n    \"\"\"\n    )\n    (tmp_dir / \"bar.dvc\").write_text(text)\n    dvc.reproduce(\"bar.dvc\")\n\n    # CRLF on windows makes the generated file bigger in size\n    code_size = 143 if os.name == \"nt\" else 142\n    assert (tmp_dir / \"bar.dvc\").read_text() == textwrap.dedent(\n        f\"\"\"\\\n        desc: top desc\n        cmd: python copy.py foo bar\n        deps:\n        - path: copy.py\n          md5: 90c27dd80b698fe766f0c3ee0b6b9729\n          size: {code_size}\n        - path: foo\n          md5: acbd18db4cc2f85cedef654fccc4a4d8\n          size: 3\n        outs:\n        # comment preserved\n        - path: bar\n          desc: out desc\n          md5: acbd18db4cc2f85cedef654fccc4a4d8\n          size: 3\n        meta:\n          name: copy-foo-bar\n        md5: be659ce4a33cebb85d4e8e1335d394ad\n    \"\"\"\n    )\n\n    run_copy(\"foo1\", \"bar1\", single_stage=True, force=True, fname=\"bar.dvc\")\n    assert (tmp_dir / \"bar.dvc\").read_text() == textwrap.dedent(\n        f\"\"\"\\\n        desc: top desc\n        cmd: python copy.py foo1 bar1\n        deps:\n        - path: foo1\n          md5: 299a0be4a5a79e6a59fdd251b19d78bb\n          size: 4\n        - path: copy.py\n          md5: 90c27dd80b698fe766f0c3ee0b6b9729\n          size: {code_size}\n        outs:\n        # comment preserved\n        - path: bar1\n          md5: 299a0be4a5a79e6a59fdd251b19d78bb\n          size: 4\n        meta:\n          name: copy-foo-bar\n        md5: 9e725b11cb393e6a7468369fa50328b7\n    \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_TestSCMGitSubmodule_test_ignored.assert_not_scm_is_ignored": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_TestSCMGitSubmodule_test_ignored.assert_not_scm_is_ignored", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 59, "end_line": 96, "span_ids": ["test_ignored", "TestSCMGitSubmodule.test_git_submodule", "TestSCMGitSubmodule.test_commit_in_submodule", "_count_gitignore_entries", "test_ignore", "TestSCMGitSubmodule"], "tokens": 292}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestSCMGitSubmodule(TestGitSubmodule):\n    def test_git_submodule(self):\n        self.assertIsInstance(SCM(os.curdir), Git)\n\n    def test_commit_in_submodule(self):\n        G = Git(self._root_dir)\n        G.add([\"foo\"])\n        G.commit(\"add\")\n        self.assertTrue(\"foo\" in self.git.git.ls_files())\n\n\ndef _count_gitignore_entries(line):\n    lines = get_gitignore_content()\n    return lines.count(line)\n\n\ndef test_ignore(tmp_dir, scm):\n    foo = os.fspath(tmp_dir / \"foo\")\n    target = \"/foo\"\n\n    scm.ignore(foo)\n    assert (tmp_dir / \".gitignore\").is_file()\n    assert _count_gitignore_entries(target) == 1\n\n    scm.ignore(foo)\n    assert (tmp_dir / \".gitignore\").is_file()\n    assert _count_gitignore_entries(target) == 1\n\n    scm.ignore_remove(foo)\n    assert not (tmp_dir / \".gitignore\").exists()\n\n\ndef test_ignored(tmp_dir, scm):\n    tmp_dir.gen({\"dir1\": {\"file1.jpg\": \"cont\", \"file2.txt\": \"cont\"}})\n    tmp_dir.gen({\".gitignore\": \"dir1/*.jpg\"})\n\n    assert scm.is_ignored(tmp_dir / \"dir1\" / \"file1.jpg\")\n    assert not scm.is_ignored(tmp_dir / \"dir1\" / \"file2.txt\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_gitignore_should_end_with_newline_test_gitignore_should_append_newline_to_gitignore.assert_contents_splitline": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_gitignore_should_end_with_newline_test_gitignore_should_append_newline_to_gitignore.assert_contents_splitline", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 138, "end_line": 165, "span_ids": ["test_gitignore_should_end_with_newline", "test_gitignore_should_append_newline_to_gitignore"], "tokens": 218}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gitignore_should_end_with_newline(tmp_dir, scm):\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    foo = os.fspath(tmp_dir / \"foo\")\n    bar = os.fspath(tmp_dir / \"bar\")\n    gitignore = tmp_dir / \".gitignore\"\n\n    scm.ignore(foo)\n    assert gitignore.read_text().endswith(\"\\n\")\n\n    scm.ignore(bar)\n    assert gitignore.read_text().endswith(\"\\n\")\n\n\ndef test_gitignore_should_append_newline_to_gitignore(tmp_dir, scm):\n    tmp_dir.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    bar_path = os.fspath(tmp_dir / \"bar\")\n    gitignore = tmp_dir / \".gitignore\"\n\n    gitignore.write_text(\"/foo\")\n    assert not gitignore.read_text().endswith(\"\\n\")\n\n    scm.ignore(bar_path)\n    contents = gitignore.read_text()\n    assert gitignore.read_text().endswith(\"\\n\")\n\n    assert contents.splitlines() == [\"/foo\", \"/bar\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_detach_head_test_git_stash_workspace.assert_1_tmp_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_detach_head_test_git_stash_workspace.assert_1_tmp_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 168, "end_line": 189, "span_ids": ["test_git_stash_workspace", "test_git_detach_head"], "tokens": 192}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_git_detach_head(tmp_dir, scm):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = scm.get_rev()\n\n    with scm.detach_head() as rev:\n        assert init_rev == rev\n        assert init_rev == (tmp_dir / \".git\" / \"HEAD\").read_text().strip()\n    assert (\n        \"ref: refs/heads/master\"\n        == (tmp_dir / \".git\" / \"HEAD\").read_text().strip()\n    )\n\n\ndef test_git_stash_workspace(tmp_dir, scm):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    tmp_dir.gen(\"file\", \"1\")\n\n    with scm.stash_workspace():\n        assert not scm.is_dirty()\n        assert \"0\" == (tmp_dir / \"file\").read_text()\n    assert scm.is_dirty()\n    assert \"1\" == (tmp_dir / \"file\").read_text()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_push_test_git_stash_push.assert_os_path_exists_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_push_test_git_stash_push.assert_os_path_exists_", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 192, "end_line": 222, "span_ids": ["test_git_stash_push"], "tokens": 283}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"ref, include_untracked\",\n    [\n        (None, True),\n        (None, False),\n        (\"refs/foo/stash\", True),\n        (\"refs/foo/stash\", False),\n    ],\n)\ndef test_git_stash_push(tmp_dir, scm, ref, include_untracked):\n    from dvc.scm.git import Stash\n\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    tmp_dir.gen({\"file\": \"1\", \"untracked\": \"0\"})\n\n    stash = Stash(scm, ref=ref)\n    rev = stash.push(include_untracked=include_untracked)\n    assert rev == scm.get_ref(stash.ref)\n    assert \"0\" == (tmp_dir / \"file\").read_text()\n    assert include_untracked != (tmp_dir / \"untracked\").exists()\n    assert len(stash) == 1\n\n    stash.apply(rev)\n    assert \"1\" == (tmp_dir / \"file\").read_text()\n    assert \"0\" == (tmp_dir / \"untracked\").read_text()\n\n    parts = list(stash.ref.split(\"/\"))\n    assert os.path.exists(os.path.join(os.fspath(tmp_dir), \".git\", *parts))\n    assert os.path.exists(\n        os.path.join(os.fspath(tmp_dir), \".git\", \"logs\", *parts)\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_drop_test_git_stash_drop.assert_len_stash_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_drop_test_git_stash_drop.assert_len_stash_1", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 225, "end_line": 240, "span_ids": ["test_git_stash_drop"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"ref\", [None, \"refs/foo/stash\"])\ndef test_git_stash_drop(tmp_dir, scm, ref):\n    from dvc.scm.git import Stash\n\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    tmp_dir.gen(\"file\", \"1\")\n\n    stash = Stash(scm, ref=ref)\n    stash.push()\n\n    tmp_dir.gen(\"file\", \"2\")\n    expected = stash.push()\n\n    stash.drop(1)\n    assert expected == scm.get_ref(stash.ref)\n    assert len(stash) == 1", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_pop_test_git_stash_pop.assert_2_tmp_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_pop_test_git_stash_pop.assert_2_tmp_dir_", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 243, "end_line": 259, "span_ids": ["test_git_stash_pop"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"ref\", [None, \"refs/foo/stash\"])\ndef test_git_stash_pop(tmp_dir, scm, ref):\n    from dvc.scm.git import Stash\n\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    tmp_dir.gen(\"file\", \"1\")\n\n    stash = Stash(scm, ref=ref)\n    first = stash.push()\n\n    tmp_dir.gen(\"file\", \"2\")\n    second = stash.push()\n\n    assert second == stash.pop()\n    assert len(stash) == 1\n    assert first == scm.get_ref(stash.ref)\n    assert \"2\" == (tmp_dir / \"file\").read_text()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_clear_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_scm.py_test_git_stash_clear_", "embedding": null, "metadata": {"file_path": "tests/func/test_scm.py", "file_name": "test_scm.py", "file_type": "text/x-python", "category": "test", "start_line": 262, "end_line": 283, "span_ids": ["test_git_stash_clear"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"ref\", [None, \"refs/foo/stash\"])\ndef test_git_stash_clear(tmp_dir, scm, ref):\n    from dvc.scm.git import Stash\n\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    tmp_dir.gen(\"file\", \"1\")\n\n    stash = Stash(scm, ref=ref)\n    stash.push()\n\n    tmp_dir.gen(\"file\", \"2\")\n    stash.push()\n\n    stash.clear()\n    assert len(stash) == 0\n\n    parts = list(stash.ref.split(\"/\"))\n    assert not os.path.exists(os.path.join(os.fspath(tmp_dir), \".git\", *parts))\n    assert not os.path.exists(\n        os.path.join(os.fspath(tmp_dir), \".git\", \"logs\", *parts)\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_dir_recursive_test_collect_with_not_existing_output_or_stage_name.with_pytest_raises_StageN.dvc_stage_collect_some_f": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_dir_recursive_test_collect_with_not_existing_output_or_stage_name.with_pytest_raises_StageN.dvc_stage_collect_some_f", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 69, "end_line": 90, "span_ids": ["test_collect_dir_recursive", "test_collect_with_not_existing_output_or_stage_name"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_dir_recursive(tmp_dir, dvc, run_head):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\"}})\n    (stage1,) = dvc.add(\"dir\", recursive=True)\n    with (tmp_dir / \"dir\").chdir():\n        stage2 = run_head(\"foo\", name=\"copy-foo-bar\")\n        stage3 = run_head(\"foo-1\", single_stage=True)\n    assert set(dvc.stage.collect(\"dir\", recursive=True)) == {\n        stage1,\n        stage2,\n        stage3,\n    }\n\n\ndef test_collect_with_not_existing_output_or_stage_name(\n    tmp_dir, dvc, run_copy\n):\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.collect(\"some_file\")\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    with pytest.raises(StageNotFound):\n        dvc.stage.collect(\"some_file\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_stages_test_stages.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_stages_test_stages.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 93, "end_line": 107, "span_ids": ["test_stages"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stages(tmp_dir, dvc):\n    def collect_stages():\n        return {stage.relpath for stage in Repo(os.fspath(tmp_dir)).stages}\n\n    tmp_dir.dvc_gen({\"file\": \"a\", \"dir/file\": \"b\", \"dir/subdir/file\": \"c\"})\n\n    assert collect_stages() == {\n        \"file.dvc\",\n        os.path.join(\"dir\", \"file.dvc\"),\n        os.path.join(\"dir\", \"subdir\", \"file.dvc\"),\n    }\n\n    tmp_dir.gen(\".dvcignore\", \"dir\")\n\n    assert collect_stages() == {\"file.dvc\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_stages_stages.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_stages_stages.return._", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 110, "end_line": 121, "span_ids": ["stages"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture\ndef stages(tmp_dir, run_copy):\n    stage1, stage2 = tmp_dir.dvc_gen({\"foo\": \"foo\", \"lorem\": \"lorem\"})\n    return {\n        \"foo-generate\": stage1,\n        \"lorem-generate\": stage2,\n        \"copy-foo-bar\": run_copy(\"foo\", \"bar\", single_stage=True),\n        \"copy-bar-foobar\": run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\"),\n        \"copy-lorem-ipsum\": run_copy(\n            \"lorem\", \"ipsum\", name=\"copy-lorem-ipsum\"\n        ),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_not_a_group_stage_with_group_flag_test_collect_not_a_group_stage_with_group_flag.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_not_a_group_stage_with_group_flag_test_collect_not_a_group_stage_with_group_flag.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 124, "end_line": 146, "span_ids": ["test_collect_not_a_group_stage_with_group_flag"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_not_a_group_stage_with_group_flag(tmp_dir, dvc, stages):\n    assert set(dvc.stage.collect(\"copy-bar-foobar\", accept_group=True)) == {\n        stages[\"copy-bar-foobar\"]\n    }\n    assert set(\n        dvc.stage.collect(\"copy-bar-foobar\", accept_group=True, with_deps=True)\n    ) == {\n        stages[\"copy-bar-foobar\"],\n        stages[\"copy-foo-bar\"],\n        stages[\"foo-generate\"],\n    }\n    assert set(\n        dvc.stage.collect_granular(\"copy-bar-foobar\", accept_group=True)\n    ) == {(stages[\"copy-bar-foobar\"], None)}\n    assert set(\n        dvc.stage.collect_granular(\n            \"copy-bar-foobar\", accept_group=True, with_deps=True\n        )\n    ) == {\n        (stages[\"copy-bar-foobar\"], None),\n        (stages[\"copy-foo-bar\"], None),\n        (stages[\"foo-generate\"], None),\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_glob_test_collect_granular_with_no_target.assert_list_map_itemgette": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_glob_test_collect_granular_with_no_target.assert_list_map_itemgette", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 189, "end_line": 204, "span_ids": ["test_collect_granular_with_no_target", "test_collect_glob"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_glob(tmp_dir, dvc, stages):\n    assert set(dvc.stage.collect(\"copy*\", glob=True)) == {\n        stages[key] for key in [\"copy-bar-foobar\", \"copy-lorem-ipsum\"]\n    }\n    assert set(\n        dvc.stage.collect(\"copy-lorem*\", glob=True, with_deps=True)\n    ) == {stages[key] for key in [\"copy-lorem-ipsum\", \"lorem-generate\"]}\n\n\ndef test_collect_granular_with_no_target(tmp_dir, dvc, stages):\n    assert set(map(itemgetter(0), dvc.stage.collect_granular())) == set(\n        stages.values()\n    )\n    assert list(map(itemgetter(1), dvc.stage.collect_granular())) == [\n        None\n    ] * len(stages)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_with_target_test_collect_granular_with_target.None_6": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_with_target_test_collect_granular_with_target.None_6", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 207, "end_line": 236, "span_ids": ["test_collect_granular_with_target"], "tokens": 316}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_granular_with_target(tmp_dir, dvc, stages):\n    assert dvc.stage.collect_granular(\"bar.dvc\") == [\n        (stages[\"copy-foo-bar\"], None)\n    ]\n    assert dvc.stage.collect_granular(PIPELINE_FILE) == [\n        (stages[\"copy-bar-foobar\"], None),\n        (stages[\"copy-lorem-ipsum\"], None),\n    ]\n    assert dvc.stage.collect_granular(\":\") == [\n        (stages[\"copy-bar-foobar\"], None),\n        (stages[\"copy-lorem-ipsum\"], None),\n    ]\n    assert dvc.stage.collect_granular(\"copy-bar-foobar\") == [\n        (stages[\"copy-bar-foobar\"], None)\n    ]\n    assert dvc.stage.collect_granular(\":copy-bar-foobar\") == [\n        (stages[\"copy-bar-foobar\"], None)\n    ]\n    assert dvc.stage.collect_granular(\"dvc.yaml:copy-bar-foobar\") == [\n        (stages[\"copy-bar-foobar\"], None)\n    ]\n\n    with (tmp_dir / dvc.DVC_DIR).chdir():\n        assert dvc.stage.collect_granular(\n            relpath(tmp_dir / PIPELINE_FILE) + \":copy-bar-foobar\"\n        ) == [(stages[\"copy-bar-foobar\"], None)]\n\n    assert dvc.stage.collect_granular(\"foobar\") == [\n        (stages[\"copy-bar-foobar\"], PathInfo(tmp_dir / \"foobar\"))\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_with_not_existing_dvcfile_test_collect_granular_with_not_existing_output_or_stage_name.None_1.dvc_stage_collect_granula": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_with_not_existing_dvcfile_test_collect_granular_with_not_existing_output_or_stage_name.None_1.dvc_stage_collect_granula", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 239, "end_line": 259, "span_ids": ["test_collect_granular_with_not_existing_output_or_stage_name", "test_collect_with_not_existing_dvcfile"], "tokens": 173}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"target\",\n    [\n        \"not_existing.dvc\",\n        \"not_existing.dvc:stage_name\",\n        \"not_existing/dvc.yaml\",\n        \"not_existing/dvc.yaml:stage_name\",\n    ],\n)\ndef test_collect_with_not_existing_dvcfile(tmp_dir, dvc, target):\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.collect_granular(target)\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.collect(target)\n\n\ndef test_collect_granular_with_not_existing_output_or_stage_name(tmp_dir, dvc):\n    with pytest.raises(NoOutputOrStageError):\n        dvc.stage.collect_granular(\"some_file\")\n    with pytest.raises(NoOutputOrStageError):\n        dvc.stage.collect_granular(\"some_file\", recursive=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_with_deps_test_collect_granular_with_deps.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_with_deps_test_collect_granular_with_deps.None_2", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 262, "end_line": 284, "span_ids": ["test_collect_granular_with_deps"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_granular_with_deps(tmp_dir, dvc, stages):\n    assert set(\n        map(\n            itemgetter(0),\n            dvc.stage.collect_granular(\"bar.dvc\", with_deps=True),\n        )\n    ) == {stages[\"copy-foo-bar\"], stages[\"foo-generate\"]}\n    assert set(\n        map(\n            itemgetter(0),\n            dvc.stage.collect_granular(\"copy-bar-foobar\", with_deps=True),\n        )\n    ) == {\n        stages[\"copy-bar-foobar\"],\n        stages[\"copy-foo-bar\"],\n        stages[\"foo-generate\"],\n    }\n    assert set(\n        map(\n            itemgetter(0),\n            dvc.stage.collect_granular(PIPELINE_FILE, with_deps=True),\n        )\n    ) == set(stages.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_same_output_name_stage_name_test_collect_granular_same_output_name_stage_name.None_6": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_same_output_name_stage_name_test_collect_granular_same_output_name_stage_name.None_6", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 287, "end_line": 303, "span_ids": ["test_collect_granular_same_output_name_stage_name"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_granular_same_output_name_stage_name(tmp_dir, dvc, run_copy):\n    (stage1,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    (stage2,) = tmp_dir.dvc_gen(\"copy-foo-bar\", \"copy-foo-bar\")\n    stage3 = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    assert dvc.stage.collect_granular(\"copy-foo-bar\") == [(stage3, None)]\n\n    coll = dvc.stage.collect_granular(\"copy-foo-bar\", with_deps=True)\n    assert set(map(itemgetter(0), coll)) == {stage3, stage1}\n    assert list(map(itemgetter(1), coll)) == [None] * 2\n\n    assert dvc.stage.collect_granular(\"./copy-foo-bar\") == [\n        (stage2, PathInfo(tmp_dir / \"copy-foo-bar\"))\n    ]\n    assert dvc.stage.collect_granular(\"./copy-foo-bar\", with_deps=True) == [\n        (stage2, PathInfo(tmp_dir / \"copy-foo-bar\"))\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_priority_on_collision_test_collect_granular_priority_on_collision.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_priority_on_collision_test_collect_granular_priority_on_collision.None_4", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 306, "end_line": 321, "span_ids": ["test_collect_granular_priority_on_collision"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_granular_priority_on_collision(tmp_dir, dvc, run_copy):\n    tmp_dir.gen({\"dir\": {\"foo\": \"foo\"}, \"foo\": \"foo\"})\n    (stage1,) = dvc.add(\"dir\", recursive=True)\n    stage2 = run_copy(\"foo\", \"bar\", name=\"dir\")\n\n    assert dvc.stage.collect_granular(\"dir\") == [(stage2, None)]\n    assert dvc.stage.collect_granular(\"dir\", recursive=True) == [\n        (stage1, None)\n    ]\n\n    remove(tmp_dir / \"dir\")\n\n    assert dvc.stage.collect_granular(\"dir\") == [(stage2, None)]\n    assert dvc.stage.collect_granular(\"dir\", recursive=True) == [\n        (stage2, None)\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_collision_output_dir_stage_name_test_collect_granular_collision_output_dir_stage_name.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_collision_output_dir_stage_name_test_collect_granular_collision_output_dir_stage_name.None_3", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 324, "end_line": 334, "span_ids": ["test_collect_granular_collision_output_dir_stage_name"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_granular_collision_output_dir_stage_name(\n    tmp_dir, dvc, run_copy\n):\n    stage1, *_ = tmp_dir.dvc_gen({\"dir\": {\"foo\": \"foo\"}, \"foo\": \"foo\"})\n    stage3 = run_copy(\"foo\", \"bar\", name=\"dir\")\n\n    assert dvc.stage.collect_granular(\"dir\") == [(stage3, None)]\n    assert not dvc.stage.collect_granular(\"dir\", recursive=True)\n    assert dvc.stage.collect_granular(\"./dir\") == [\n        (stage1, PathInfo(tmp_dir / \"dir\"))\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_not_existing_stage_name_test_collect_granular_not_existing_stage_name.with_pytest_raises_StageN.dvc_stage_collect_granula": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_granular_not_existing_stage_name_test_collect_granular_not_existing_stage_name.with_pytest_raises_StageN.dvc_stage_collect_granula", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 337, "end_line": 346, "span_ids": ["test_collect_granular_not_existing_stage_name"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_granular_not_existing_stage_name(tmp_dir, dvc, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    (stage,) = tmp_dir.dvc_gen(\"copy-foo-bar\", \"copy-foo-bar\")\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    assert dvc.stage.collect_granular(\n        \"copy-foo-bar.dvc:stage_name_not_needed\"\n    ) == [(stage, None)]\n    with pytest.raises(StageNotFound):\n        dvc.stage.collect_granular(\"dvc.yaml:does-not-exist\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stages_test_get_stages.with_pytest_raises_StageN.dvc_stage_load_all_path_P": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stages_test_get_stages.with_pytest_raises_StageN.dvc_stage_load_all_path_P", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 349, "end_line": 368, "span_ids": ["test_get_stages"], "tokens": 224}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_stages(tmp_dir, dvc, run_copy):\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.load_all()\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    stage2 = run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n\n    assert set(dvc.stage.load_all()) == {stage1, stage2}\n    assert set(dvc.stage.load_all(path=PIPELINE_FILE)) == {stage1, stage2}\n    assert set(dvc.stage.load_all(name=\"copy-bar-foobar\")) == {stage2}\n    assert set(\n        dvc.stage.load_all(path=PIPELINE_FILE, name=\"copy-bar-foobar\")\n    ) == {stage2}\n\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.load_all(path=relpath(tmp_dir / \"..\" / PIPELINE_FILE))\n\n    with pytest.raises(StageNotFound):\n        dvc.stage.load_all(path=PIPELINE_FILE, name=\"copy\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stages_old_dvcfile_test_get_stages_old_dvcfile.with_pytest_raises_StageF.dvc_stage_load_all_path_r": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stages_old_dvcfile_test_get_stages_old_dvcfile.with_pytest_raises_StageF.dvc_stage_load_all_path_r", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 371, "end_line": 377, "span_ids": ["test_get_stages_old_dvcfile"], "tokens": 106}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_stages_old_dvcfile(tmp_dir, dvc):\n    (stage1,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert set(dvc.stage.load_all(\"foo.dvc\")) == {stage1}\n    assert set(dvc.stage.load_all(\"foo.dvc\", name=\"foo-generate\")) == {stage1}\n\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.load_all(path=relpath(tmp_dir / \"..\" / \"foo.dvc\"))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stage_test_get_stage.None_3.dvc_stage_load_one_name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stage_test_get_stage.None_3.dvc_stage_load_one_name_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 380, "end_line": 399, "span_ids": ["test_get_stage"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_stage(tmp_dir, dvc, run_copy):\n    tmp_dir.gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n\n    with pytest.raises(StageNameUnspecified):\n        dvc.stage.load_one()\n\n    with pytest.raises(StageNameUnspecified):\n        dvc.stage.load_one(path=PIPELINE_FILE)\n\n    assert (\n        dvc.stage.load_one(path=PIPELINE_FILE, name=\"copy-foo-bar\") == stage1\n    )\n    assert dvc.stage.load_one(name=\"copy-foo-bar\") == stage1\n\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.load_one(path=\"something.yaml\", name=\"name\")\n\n    with pytest.raises(StageNotFound):\n        dvc.stage.load_one(name=\"random_name\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stage_single_stage_dvcfile_test_collect_optimization.dvc_stage_collect_granula": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_get_stage_single_stage_dvcfile_test_collect_optimization.dvc_stage_collect_granula", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 402, "end_line": 422, "span_ids": ["test_get_stage_single_stage_dvcfile", "test_collect_optimization"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_stage_single_stage_dvcfile(tmp_dir, dvc):\n    (stage1,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert dvc.stage.load_one(\"foo.dvc\") == stage1\n    assert dvc.stage.load_one(\"foo.dvc\", name=\"jpt\") == stage1\n    with pytest.raises(StageFileDoesNotExistError):\n        dvc.stage.load_one(path=\"bar.dvc\", name=\"name\")\n\n\ndef test_collect_optimization(tmp_dir, dvc, mocker):\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo text\")\n\n    # Forget cached stages and graph and error out on collection\n    dvc._reset()\n    mocker.patch(\n        \"dvc.repo.Repo.stages\",\n        property(raiser(Exception(\"Should not collect\"))),\n    )\n\n    # Should read stage directly instead of collecting the whole graph\n    dvc.stage.collect(stage.path)\n    dvc.stage.collect_granular(stage.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_test_locked_test_skip_graph_checks.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_test_locked_test_skip_graph_checks.None_2", "embedding": null, "metadata": {"file_path": "tests/unit/repo/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 59, "end_line": 99, "span_ids": ["test_locked", "test_skip_graph_checks"], "tokens": 307}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_locked(mocker):\n    repo = mocker.MagicMock()\n    repo._lock_depth = 0\n    repo.method = locked(repo.method)\n\n    args = ()\n    kwargs = {}\n    repo.method(repo, args, kwargs)\n\n    assert repo.method_calls == [\n        mocker.call._reset(),\n        mocker.call.method(repo, args, kwargs),\n        mocker.call._reset(),\n    ]\n\n\ndef test_skip_graph_checks(tmp_dir, dvc, mocker, run_copy):\n    # See https://github.com/iterative/dvc/issues/2671 for more info\n    mock_build_graph = mocker.patch(\"dvc.repo.build_graph\")\n\n    # sanity check\n    tmp_dir.gen(\"foo\", \"foo text\")\n    dvc.add(\"foo\")\n    run_copy(\"foo\", \"bar\", single_stage=True)\n    assert mock_build_graph.called\n\n    # check that our hack can be enabled\n    mock_build_graph.reset_mock()\n    dvc._skip_graph_checks = True\n    tmp_dir.gen(\"baz\", \"baz text\")\n    dvc.add(\"baz\")\n    run_copy(\"baz\", \"qux\", single_stage=True)\n    assert not mock_build_graph.called\n\n    # check that our hack can be disabled\n    mock_build_graph.reset_mock()\n    dvc._skip_graph_checks = False\n    tmp_dir.gen(\"quux\", \"quux text\")\n    dvc.add(\"quux\")\n    run_copy(\"quux\", \"quuz\", single_stage=True)\n    assert mock_build_graph.called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_no_commits_test_branch_revs.assert_len_expected_0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_no_commits_test_branch_revs.assert_len_expected_0", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 101, "end_line": 126, "span_ids": ["test_no_commits", "test_branch_revs"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_commits(tmp_dir):\n    from dvc.scm.git import Git\n    from tests.dir_helpers import git_init\n\n    git_init(\".\")\n    assert Git().no_commits\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    Git().add([\"foo\"])\n    Git().commit(\"foo\")\n\n    assert not Git().no_commits\n\n\ndef test_branch_revs(tmp_dir, scm):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = scm.get_rev()\n\n    expected = []\n    for i in range(1, 5):\n        tmp_dir.scm_gen({\"file\": f\"{i}\"}, commit=f\"{i}\")\n        expected.append(scm.get_rev())\n\n    for rev in scm.branch_revs(\"master\", init_rev):\n        assert rev == expected.pop()\n    assert len(expected) == 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_set_ref_test_set_ref.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_set_ref_test_set_ref.None_2", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 142, "end_line": 166, "span_ids": ["test_set_ref"], "tokens": 248}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_set_ref(tmp_dir, git):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = tmp_dir.scm.get_rev()\n    tmp_dir.scm_gen({\"file\": \"1\"}, commit=\"commit\")\n    commit_rev = tmp_dir.scm.get_rev()\n\n    git.set_ref(\"refs/foo/bar\", init_rev)\n    assert (\n        init_rev\n        == (tmp_dir / \".git\" / \"refs\" / \"foo\" / \"bar\").read_text().strip()\n    )\n\n    with pytest.raises(SCMError):\n        git.set_ref(\"refs/foo/bar\", commit_rev, old_ref=commit_rev)\n    git.set_ref(\"refs/foo/bar\", commit_rev, old_ref=init_rev)\n    assert (\n        commit_rev\n        == (tmp_dir / \".git\" / \"refs\" / \"foo\" / \"bar\").read_text().strip()\n    )\n\n    git.set_ref(\"refs/foo/baz\", \"refs/heads/master\", symbolic=True)\n    assert (\n        \"ref: refs/heads/master\"\n        == (tmp_dir / \".git\" / \"refs\" / \"foo\" / \"baz\").read_text().strip()\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_remove_ref_test_remove_ref.assert_not_tmp_dir_g": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_remove_ref_test_remove_ref.assert_not_tmp_dir_g", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 187, "end_line": 197, "span_ids": ["test_remove_ref"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_remove_ref(tmp_dir, git):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = tmp_dir.scm.get_rev()\n    tmp_dir.gen(os.path.join(\".git\", \"refs\", \"foo\", \"bar\"), init_rev)\n    tmp_dir.scm_gen({\"file\": \"1\"}, commit=\"commit\")\n    commit_rev = tmp_dir.scm.get_rev()\n\n    with pytest.raises(SCMError):\n        git.remove_ref(\"refs/foo/bar\", old_ref=commit_rev)\n    git.remove_ref(\"refs/foo/bar\", old_ref=init_rev)\n    assert not (tmp_dir / \".git\" / \"refs\" / \"foo\" / \"bar\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_refs_containing_test_refs_containing.assert_expected_set_sc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_refs_containing_test_refs_containing.assert_expected_set_sc", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 187, "end_line": 198, "span_ids": ["test_refs_containing"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_refs_containing(tmp_dir, scm):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = scm.get_rev()\n    tmp_dir.gen(\n        {\n            os.path.join(\".git\", \"refs\", \"foo\", \"bar\"): init_rev,\n            os.path.join(\".git\", \"refs\", \"foo\", \"baz\"): init_rev,\n        }\n    )\n\n    expected = {\"refs/foo/bar\", \"refs/foo/baz\", \"refs/heads/master\"}\n    assert expected == set(scm.get_refs_containing(init_rev))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_push_refspec_test_push_refspec.assert_remote_dir_scm_get": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_push_refspec_test_push_refspec.assert_remote_dir_scm_get", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 214, "end_line": 243, "span_ids": ["test_push_refspec"], "tokens": 320}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_url\", [True, False])\ndef test_push_refspec(tmp_dir, scm, make_tmp_dir, use_url):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = scm.get_rev()\n    tmp_dir.gen(\n        {\n            os.path.join(\".git\", \"refs\", \"foo\", \"bar\"): init_rev,\n            os.path.join(\".git\", \"refs\", \"foo\", \"baz\"): init_rev,\n        }\n    )\n    remote_dir = make_tmp_dir(\"git-remote\", scm=True)\n    url = \"file://{}\".format(remote_dir.resolve().as_posix())\n    scm.gitpython.repo.create_remote(\"origin\", url)\n\n    with pytest.raises(SCMError):\n        scm.push_refspec(\"bad-remote\", \"refs/foo/bar\", \"refs/foo/bar\")\n\n    remote = url if use_url else \"origin\"\n    scm.push_refspec(remote, \"refs/foo/bar\", \"refs/foo/bar\")\n    assert init_rev == remote_dir.scm.get_ref(\"refs/foo/bar\")\n\n    remote_dir.scm.checkout(\"refs/foo/bar\")\n    assert init_rev == remote_dir.scm.get_rev()\n    assert \"0\" == (remote_dir / \"file\").read_text()\n\n    scm.push_refspec(remote, \"refs/foo/\", \"refs/foo/\")\n    assert init_rev == remote_dir.scm.get_ref(\"refs/foo/baz\")\n\n    scm.push_refspec(remote, None, \"refs/foo/baz\")\n    assert remote_dir.scm.get_ref(\"refs/foo/baz\") is None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_parse_target_test_parse_target.assert_parse_target_inp_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_parse_target_test_parse_target.assert_parse_target_inp_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 138, "end_line": 180, "span_ids": ["test_parse_target"], "tokens": 506}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"inp,out, default\",\n    [\n        [\"dvc.yaml\", (\"dvc.yaml\", None), None],\n        [\"dvc.yaml:name\", (\"dvc.yaml\", \"name\"), None],\n        [\":name\", (\"dvc.yaml\", \"name\"), None],\n        [\"stage.dvc\", (\"stage.dvc\", None), None],\n        [\"dvc.yaml:name\", (\"dvc.yaml\", \"name\"), None],\n        [\"../models/stage.dvc\", (\"../models/stage.dvc\", None), \"def\"],\n        [\":name\", (\"default\", \"name\"), \"default\"],\n        [\":name\", (\"default\", \"name\"), \"default\"],\n        [\"something.dvc:name\", (\"something.dvc\", \"name\"), None],\n        [\"../something.dvc:name\", (\"../something.dvc\", \"name\"), None],\n        [\"file\", (None, \"file\"), None],\n        [\"build@15\", (None, \"build@15\"), None],\n        [\"build@{'level': 35}\", (None, \"build@{'level': 35}\"), None],\n        [\":build@15\", (\"dvc.yaml\", \"build@15\"), None],\n        [\":build@{'level': 35}\", (\"dvc.yaml\", \"build@{'level': 35}\"), None],\n        [\"dvc.yaml:build@15\", (\"dvc.yaml\", \"build@15\"), None],\n        [\n            \"dvc.yaml:build@{'level': 35}\",\n            (\"dvc.yaml\", \"build@{'level': 35}\"),\n            None,\n        ],\n        [\n            \"build2@{'level': [1, 2, 3]}\",\n            (None, \"build2@{'level': [1, 2, 3]}\"),\n            None,\n        ],\n        [\n            \":build2@{'level': [1, 2, 3]}\",\n            (\"dvc.yaml\", \"build2@{'level': [1, 2, 3]}\"),\n            None,\n        ],\n        [\n            \"dvc.yaml:build2@{'level': [1, 2, 3]}\",\n            (\"dvc.yaml\", \"build2@{'level': [1, 2, 3]}\"),\n            None,\n        ],\n    ],\n)\ndef test_parse_target(inp, out, default):\n    assert parse_target(inp, default) == out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_hint_on_lockfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_utils.py_test_hint_on_lockfile_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_utils.py", "file_name": "test_utils.py", "file_type": "text/x-python", "category": "test", "start_line": 183, "end_line": 212, "span_ids": ["test_dict_sha256", "test_hint_on_lockfile"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_hint_on_lockfile():\n    with pytest.raises(Exception) as exc:\n        assert parse_target(\"dvc.lock:name\")\n    assert \"dvc.yaml:name\" in str(exc.value)\n\n\n@pytest.mark.parametrize(\n    \"d,sha\",\n    [\n        (\n            {\n                \"cmd\": \"echo content > out\",\n                \"deps\": {\"dep\": \"2254342becceafbd04538e0a38696791\"},\n                \"outs\": {\"out\": \"f75b8179e4bbe7e2b4a074dcef62de95\"},\n            },\n            \"f472eda60f09660a4750e8b3208cf90b3a3b24e5f42e0371d829710e9464d74a\",\n        ),\n        (\n            {\n                \"cmd\": \"echo content > out\",\n                \"deps\": {\"dep\": \"2254342becceafbd04538e0a38696791\"},\n                \"outs\": [\"out\"],\n            },\n            \"a239b67073bd58affcdb81fff3305d1726c6e7f9c86f3d4fca0e92e8147dc7b0\",\n        ),\n    ],\n)\ndef test_dict_sha256(d, sha):\n    assert dict_sha256(d) == sha", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_argparse__name_type.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_argparse__name_type.return._", "embedding": null, "metadata": {"file_path": "dvc/command/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["imports", "_name_type"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\nimport os\n\nfrom dvc.command.base import CmdBaseNoRepo, append_doc_link\nfrom dvc.config import Config, ConfigError\nfrom dvc.repo import Repo\nfrom dvc.utils.flatten import flatten\n\nlogger = logging.getLogger(__name__)\n\nNAME_REGEX = r\"^(?P<remote>remote\\.)?(?P<section>[^\\.]*)\\.(?P<option>[^\\.]*)$\"\n\n\ndef _name_type(value):\n    import re\n\n    match = re.match(NAME_REGEX, value)\n    if not match:\n        raise argparse.ArgumentTypeError(\n            \"name argument should look like \"\n            \"remote.name.option or \"\n            \"section.option\"\n        )\n    return (\n        bool(match.group(\"remote\")),\n        match.group(\"section\").lower(),\n        match.group(\"option\").lower(),\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_CmdConfig_CmdConfig.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_CmdConfig_CmdConfig.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 32, "end_line": 102, "span_ids": ["CmdConfig", "CmdConfig.__init__", "CmdConfig.run"], "tokens": 510}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdConfig(CmdBaseNoRepo):\n    def __init__(self, args):\n        super().__init__(args)\n\n        self.config = Config(validate=False)\n\n    def run(self):\n        if self.args.show_origin:\n            if any((self.args.value, self.args.unset)):\n                logger.error(\n                    \"--show-origin can't be used together with any of these \"\n                    \"options: -u/--unset, value\"\n                )\n                return 1\n            if not self.args.level:\n                logger.error(\n                    \"--show-origin requires one of these options: \"\n                    \"--system, --global, --repo, --local\"\n                )\n                return 1\n\n        if self.args.list:\n            if any((self.args.name, self.args.value, self.args.unset)):\n                logger.error(\n                    \"-l/--list can't be used together with any of these \"\n                    \"options: -u/--unset, name, value\"\n                )\n                return 1\n\n            conf = self.config.read(self.args.level)\n            prefix = self._config_file_prefix(\n                self.args.show_origin, self.config, self.args.level\n            )\n            logger.info(\"\\n\".join(self._format_config(conf, prefix)))\n            return 0\n\n        if self.args.name is None:\n            logger.error(\"name argument is required\")\n            return 1\n\n        remote, section, opt = self.args.name\n\n        if self.args.value is None and not self.args.unset:\n            conf = self.config.read(self.args.level)\n            prefix = self._config_file_prefix(\n                self.args.show_origin, self.config, self.args.level\n            )\n            if remote:\n                conf = conf[\"remote\"]\n            self._check(conf, remote, section, opt)\n            logger.info(\"{}{}\".format(prefix, conf[section][opt]))\n            return 0\n\n        with self.config.edit(self.args.level) as conf:\n            if remote:\n                conf = conf[\"remote\"]\n            if self.args.unset:\n                self._check(conf, remote, section, opt)\n                del conf[section][opt]\n            else:\n                self._check(conf, remote, section)\n                conf[section][opt] = self.args.value\n\n        if self.args.name == \"cache.type\":\n            logger.warning(\n                \"You have changed the 'cache.type' option. This doesn't update\"\n                \" any existing workspace file links, but it can be done with:\"\n                \"\\n             dvc checkout --relink\"\n            )\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsApply__show_diff.return.table_header_rows_markd": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsApply__show_diff.return.table_header_rows_markd", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 356, "end_line": 400, "span_ids": ["CmdExperimentsApply", "_show_diff", "CmdExperimentsApply.run"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsApply(CmdBase):\n    def run(self):\n\n        self.repo.experiments.apply(\n            self.args.experiment, force=self.args.force\n        )\n\n        return 0\n\n\ndef _show_diff(\n    diff,\n    title=\"\",\n    markdown=False,\n    no_path=False,\n    old=False,\n    precision=DEFAULT_PRECISION,\n):\n    from dvc.utils.diff import table\n\n    rows = []\n    for fname, diff_ in diff.items():\n        sorted_diff = OrderedDict(sorted(diff_.items()))\n        for item, change in sorted_diff.items():\n            row = [] if no_path else [fname]\n            row.append(item)\n            if old:\n                row.append(_format_field(change.get(\"old\"), precision))\n            row.append(_format_field(change[\"new\"], precision))\n            row.append(\n                _format_field(\n                    change.get(\"diff\", \"diff not supported\"), precision\n                )\n            )\n            rows.append(row)\n\n    header = [] if no_path else [\"Path\"]\n    header.append(title)\n    if old:\n        header.extend([\"Old\", \"New\"])\n    else:\n        header.append(\"Value\")\n    header.append(\"Change\")\n\n    return table(header, rows, markdown)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsRun__raise_error_if_all_disabled.if_not_any_kwargs_values_.raise_InvalidArgumentErro": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsRun__raise_error_if_all_disabled.if_not_any_kwargs_values_.raise_InvalidArgumentErro", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 444, "end_line": 465, "span_ids": ["CmdExperimentsRun", "_raise_error_if_all_disabled", "CmdExperimentsRun.run"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsRun(CmdRepro):\n    def run(self):\n        self.repo.experiments.run(\n            name=self.args.name,\n            queue=self.args.queue,\n            run_all=self.args.run_all,\n            jobs=self.args.jobs,\n            params=self.args.params,\n            checkpoint_resume=self.args.checkpoint_resume,\n            tmp_dir=self.args.tmp_dir,\n            **self._repro_kwargs,\n        )\n\n        return 0\n\n\ndef _raise_error_if_all_disabled(**kwargs):\n    if not any(kwargs.values()):\n        raise InvalidArgumentError(\n            \"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags` \"\n            \"or `--all-commits` needs to be set.\"\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsBranch_CmdExperimentsList.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsBranch_CmdExperimentsList.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 518, "end_line": 545, "span_ids": ["CmdExperimentsBranch.run", "CmdExperimentsList", "CmdExperimentsBranch", "CmdExperimentsList.run"], "tokens": 177}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsBranch(CmdBase):\n    def run(self):\n\n        self.repo.experiments.branch(self.args.experiment, self.args.branch)\n\n        return 0\n\n\nclass CmdExperimentsList(CmdBase):\n    def run(self):\n\n        exps = self.repo.experiments.ls(\n            rev=self.args.rev,\n            git_remote=self.args.git_remote,\n            all_=self.args.all,\n        )\n        for baseline in exps:\n            tag = self.repo.scm.describe(baseline)\n            if not tag:\n                branch = self.repo.scm.describe(baseline, base=\"refs/heads\")\n                if branch:\n                    tag = branch.split(\"/\")[-1]\n            name = tag if tag else baseline[:7]\n            logger.info(f\"{name}:\")\n            for exp_name in exps[baseline]:\n                logger.info(f\"\\t{exp_name}\")\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsPush_CmdExperimentsPush.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsPush_CmdExperimentsPush.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 548, "end_line": 572, "span_ids": ["CmdExperimentsPush", "CmdExperimentsPush.run"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsPush(CmdBase):\n    def run(self):\n\n        self.repo.experiments.push(\n            self.args.git_remote,\n            self.args.experiment,\n            force=self.args.force,\n            push_cache=self.args.push_cache,\n            dvc_remote=self.args.dvc_remote,\n            jobs=self.args.jobs,\n            run_cache=self.args.run_cache,\n        )\n\n        logger.info(\n            \"Pushed experiment '%s' to Git remote '%s'.\",\n            self.args.experiment,\n            self.args.git_remote,\n        )\n        if not self.args.push_cache:\n            logger.info(\n                \"To push cached outputs for this experiment to DVC remote \"\n                \"storage, re-run this command without '--no-cache'.\"\n            )\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsPull_CmdExperimentsPull.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_CmdExperimentsPull_CmdExperimentsPull.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 575, "end_line": 599, "span_ids": ["CmdExperimentsPull", "CmdExperimentsPull.run"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdExperimentsPull(CmdBase):\n    def run(self):\n\n        self.repo.experiments.pull(\n            self.args.git_remote,\n            self.args.experiment,\n            force=self.args.force,\n            pull_cache=self.args.pull_cache,\n            dvc_remote=self.args.dvc_remote,\n            jobs=self.args.jobs,\n            run_cache=self.args.run_cache,\n        )\n\n        logger.info(\n            \"Pulled experiment '%s' from Git remote '%s'. \",\n            self.args.experiment,\n            self.args.git_remote,\n        )\n        if not self.args.pull_cache:\n            logger.info(\n                \"To pull cached outputs for this experiment from DVC remote \"\n                \"storage, re-run this command without '--no-cache'.\"\n            )\n\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.None_14_add_parser.experiments_run_parser_ad": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.None_14_add_parser.experiments_run_parser_ad", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 713, "end_line": 817, "span_ids": ["add_parser"], "tokens": 755}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    experiments_show_parser.add_argument(\n        \"--precision\",\n        type=int,\n        help=(\n            \"Round metrics/params to `n` digits precision after the decimal \"\n            f\"point. Rounds to {DEFAULT_PRECISION} digits by default.\"\n        ),\n        metavar=\"<n>\",\n    )\n    experiments_show_parser.set_defaults(func=CmdExperimentsShow)\n\n    EXPERIMENTS_APPLY_HELP = (\n        \"Apply the changes from an experiment to your workspace.\"\n    )\n    experiments_apply_parser = experiments_subparsers.add_parser(\n        \"apply\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_APPLY_HELP, \"exp/apply\"),\n        help=EXPERIMENTS_APPLY_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_apply_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        help=\"Overwrite any conflicting changes.\",\n    )\n    experiments_apply_parser.add_argument(\n        \"experiment\", help=\"Experiment to be applied.\",\n    )\n    experiments_apply_parser.set_defaults(func=CmdExperimentsApply)\n\n    EXPERIMENTS_DIFF_HELP = (\n        \"Show changes between experiments in the DVC repository.\"\n    )\n    experiments_diff_parser = experiments_subparsers.add_parser(\n        \"diff\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_DIFF_HELP, \"exp/diff\"),\n        help=EXPERIMENTS_DIFF_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_diff_parser.add_argument(\n        \"a_rev\", nargs=\"?\", help=\"Old experiment to compare (defaults to HEAD)\"\n    )\n    experiments_diff_parser.add_argument(\n        \"b_rev\",\n        nargs=\"?\",\n        help=\"New experiment to compare (defaults to the current workspace)\",\n    )\n    experiments_diff_parser.add_argument(\n        \"--all\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show unchanged metrics/params as well.\",\n    )\n    experiments_diff_parser.add_argument(\n        \"--show-json\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show output in JSON format.\",\n    )\n    experiments_diff_parser.add_argument(\n        \"--show-md\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show tabulated output in the Markdown format (GFM).\",\n    )\n    experiments_diff_parser.add_argument(\n        \"--old\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show old metric/param value.\",\n    )\n    experiments_diff_parser.add_argument(\n        \"--no-path\",\n        action=\"store_true\",\n        default=False,\n        help=\"Don't show metric/param path.\",\n    )\n    experiments_diff_parser.add_argument(\n        \"--precision\",\n        type=int,\n        help=(\n            \"Round metrics/params to `n` digits precision after the decimal \"\n            f\"point. Rounds to {DEFAULT_PRECISION} digits by default.\"\n        ),\n        metavar=\"<n>\",\n    )\n    experiments_diff_parser.set_defaults(func=CmdExperimentsDiff)\n\n    EXPERIMENTS_RUN_HELP = (\n        \"Reproduce complete or partial experiment pipelines.\"\n    )\n    experiments_run_parser = experiments_subparsers.add_parser(\n        \"run\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_RUN_HELP, \"exp/run\"),\n        help=EXPERIMENTS_RUN_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    _add_run_common(experiments_run_parser)\n    experiments_run_parser.add_argument(\n        \"--checkpoint-resume\", type=str, default=None, help=argparse.SUPPRESS,\n    )\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.experiments_run_parser_se_add_parser.EXPERIMENTS_LIST_HELP._List_local_and_remote_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.experiments_run_parser_se_add_parser.EXPERIMENTS_LIST_HELP._List_local_and_remote_ex", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 818, "end_line": 918, "span_ids": ["add_parser"], "tokens": 727}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    experiments_run_parser.set_defaults(func=CmdExperimentsRun)\n\n    EXPERIMENTS_RESUME_HELP = \"Resume checkpoint experiments.\"\n    experiments_resume_parser = experiments_subparsers.add_parser(\n        \"resume\",\n        parents=[parent_parser],\n        aliases=[\"res\"],\n        description=append_doc_link(EXPERIMENTS_RESUME_HELP, \"exp/resume\"),\n        help=EXPERIMENTS_RESUME_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    _add_run_common(experiments_resume_parser)\n    experiments_resume_parser.add_argument(\n        \"-r\",\n        \"--rev\",\n        type=str,\n        default=Experiments.LAST_CHECKPOINT,\n        dest=\"checkpoint_resume\",\n        help=(\n            \"Continue the specified checkpoint experiment. \"\n            \"If no experiment revision is provided, \"\n            \"the most recently run checkpoint experiment will be used.\"\n        ),\n        metavar=\"<experiment_rev>\",\n    )\n    experiments_resume_parser.set_defaults(func=CmdExperimentsRun)\n\n    EXPERIMENTS_GC_HELP = \"Garbage collect unneeded experiments.\"\n    EXPERIMENTS_GC_DESCRIPTION = (\n        \"Removes all experiments which are not derived from the specified\"\n        \"Git revisions.\"\n    )\n    experiments_gc_parser = experiments_subparsers.add_parser(\n        \"gc\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_GC_DESCRIPTION, \"exp/gc\"),\n        help=EXPERIMENTS_GC_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_gc_parser.add_argument(\n        \"-w\",\n        \"--workspace\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep experiments derived from the current workspace.\",\n    )\n    experiments_gc_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep experiments derived from the tips of all Git branches.\",\n    )\n    experiments_gc_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep experiments derived from all Git tags.\",\n    )\n    experiments_gc_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Keep experiments derived from all Git commits.\",\n    )\n    experiments_gc_parser.add_argument(\n        \"--queued\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Keep queued experiments (experiments run queue will be cleared \"\n            \"by default).\"\n        ),\n    )\n    experiments_gc_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Force garbage collection - automatically agree to all prompts.\",\n    )\n    experiments_gc_parser.set_defaults(func=CmdExperimentsGC)\n\n    EXPERIMENTS_BRANCH_HELP = \"Promote an experiment to a Git branch.\"\n    experiments_branch_parser = experiments_subparsers.add_parser(\n        \"branch\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_BRANCH_HELP, \"exp/branch\"),\n        help=EXPERIMENTS_BRANCH_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_branch_parser.add_argument(\n        \"experiment\", help=\"Experiment to be promoted.\",\n    )\n    experiments_branch_parser.add_argument(\n        \"branch\", help=\"Git branch name to use.\",\n    )\n    experiments_branch_parser.set_defaults(func=CmdExperimentsBranch)\n\n    EXPERIMENTS_LIST_HELP = \"List local and remote experiments.\"\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.experiments_list_parser_add_parser.experiments_pull_parser_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.experiments_list_parser_add_parser.experiments_pull_parser_a", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 919, "end_line": 1021, "span_ids": ["add_parser"], "tokens": 718}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    experiments_list_parser = experiments_subparsers.add_parser(\n        \"list\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_LIST_HELP, \"exp/list\"),\n        help=EXPERIMENTS_LIST_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_list_parser.add_argument(\n        \"--rev\",\n        type=str,\n        default=None,\n        help=(\n            \"List experiments derived from the specified revision. \"\n            \"Defaults to HEAD if neither `--rev` nor `--all` are specified.\"\n        ),\n        metavar=\"<rev>\",\n    )\n    experiments_list_parser.add_argument(\n        \"--all\", action=\"store_true\", help=\"List all experiments.\",\n    )\n    experiments_list_parser.add_argument(\n        \"git_remote\",\n        nargs=\"?\",\n        default=None,\n        help=(\n            \"Optional Git remote name or Git URL. If provided, experiments \"\n            \"from the specified Git repository will be listed instead of \"\n            \"local experiments.\"\n        ),\n        metavar=\"[<git_remote>]\",\n    )\n    experiments_list_parser.set_defaults(func=CmdExperimentsList)\n\n    EXPERIMENTS_PUSH_HELP = \"Push a local experiment to a Git remote.\"\n    experiments_push_parser = experiments_subparsers.add_parser(\n        \"push\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_PUSH_HELP, \"exp/push\"),\n        help=EXPERIMENTS_PUSH_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_push_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        help=\"Replace experiment in the Git remote if it already exists.\",\n    )\n    experiments_push_parser.add_argument(\n        \"--no-cache\",\n        action=\"store_false\",\n        dest=\"push_cache\",\n        help=(\n            \"Do not push cached outputs for this experiment to DVC remote \"\n            \"storage.\"\n        ),\n    )\n    experiments_push_parser.add_argument(\n        \"-r\",\n        \"--remote\",\n        dest=\"dvc_remote\",\n        metavar=\"<name>\",\n        help=\"Name of the DVC remote to use when pushing cached outputs.\",\n    )\n    experiments_push_parser.add_argument(\n        \"-j\",\n        \"--jobs\",\n        type=int,\n        metavar=\"<number>\",\n        help=(\n            \"Number of jobs to run simultaneously when pushing to DVC remote \"\n            \"storage.\"\n        ),\n    )\n    experiments_push_parser.add_argument(\n        \"--run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push run history for all stages.\",\n    )\n    experiments_push_parser.add_argument(\n        \"git_remote\",\n        help=\"Git remote name or Git URL.\",\n        metavar=\"<git_remote>\",\n    )\n    experiments_push_parser.add_argument(\n        \"experiment\", help=\"Experiment to push.\", metavar=\"<experiment>\",\n    )\n    experiments_push_parser.set_defaults(func=CmdExperimentsPush)\n\n    EXPERIMENTS_PULL_HELP = \"Pull an experiment from a Git remote.\"\n    experiments_pull_parser = experiments_subparsers.add_parser(\n        \"pull\",\n        parents=[parent_parser],\n        description=append_doc_link(EXPERIMENTS_PULL_HELP, \"exp/pull\"),\n        help=EXPERIMENTS_PULL_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    experiments_pull_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        help=\"Replace local experiment already exists.\",\n    )\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.None_57_add_parser.experiments_pull_parser_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/experiments.py_add_parser.None_57_add_parser.experiments_pull_parser_s", "embedding": null, "metadata": {"file_path": "dvc/command/experiments.py", "file_name": "experiments.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1022, "end_line": 1062, "span_ids": ["add_parser"], "tokens": 260}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    experiments_pull_parser.add_argument(\n        \"--no-cache\",\n        action=\"store_false\",\n        dest=\"pull_cache\",\n        help=(\n            \"Do not pull cached outputs for this experiment from DVC remote \"\n            \"storage.\"\n        ),\n    )\n    experiments_pull_parser.add_argument(\n        \"-r\",\n        \"--remote\",\n        dest=\"dvc_remote\",\n        metavar=\"<name>\",\n        help=\"Name of the DVC remote to use when pulling cached outputs.\",\n    )\n    experiments_pull_parser.add_argument(\n        \"-j\",\n        \"--jobs\",\n        type=int,\n        metavar=\"<number>\",\n        help=(\n            \"Number of jobs to run simultaneously when pulling from DVC \"\n            \"remote storage.\"\n        ),\n    )\n    experiments_pull_parser.add_argument(\n        \"--run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=\"Pull run history for all stages.\",\n    )\n    experiments_pull_parser.add_argument(\n        \"git_remote\",\n        help=\"Git remote name or Git URL.\",\n        metavar=\"<git_remote>\",\n    )\n    experiments_pull_parser.add_argument(\n        \"experiment\", help=\"Experiment to pull.\", metavar=\"<experiment>\",\n    )\n    experiments_pull_parser.set_defaults(func=CmdExperimentsPull)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_argparse__show_metrics.return.table_header_rows_markd": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_argparse__show_metrics.return.table_header_rows_markd", "embedding": null, "metadata": {"file_path": "dvc/command/metrics.py", "file_name": "metrics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 69, "span_ids": ["imports", "_show_metrics"], "tokens": 421}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link, fix_subparsers\nfrom dvc.exceptions import BadMetricError, DvcException\n\nlogger = logging.getLogger(__name__)\n\n\nDEFAULT_PRECISION = 5\n\n\ndef _show_metrics(\n    metrics,\n    markdown=False,\n    all_branches=False,\n    all_tags=False,\n    all_commits=False,\n    precision=None,\n):\n    from dvc.utils.diff import format_dict, table\n    from dvc.utils.flatten import flatten\n\n    # When `metrics` contains a `None` key, it means that some files\n    # specified as `targets` in `repo.metrics.show` didn't contain any metrics.\n    missing = metrics.pop(None, None)\n    with_rev = any([all_branches, all_tags, all_commits])\n    header_set = set()\n    rows = []\n\n    if precision is None:\n        precision = DEFAULT_PRECISION\n\n    def _round(val):\n        if isinstance(val, float):\n            return round(val, precision)\n        return val\n\n    for _branch, val in metrics.items():\n        for _fname, metric in val.items():\n            if not isinstance(metric, dict):\n                header_set.add(\"\")\n                continue\n            for key, _val in flatten(format_dict(metric)).items():\n                header_set.add(key)\n    header = sorted(header_set)\n    for branch, val in metrics.items():\n        for fname, metric in val.items():\n            row = []\n            if with_rev:\n                row.append(branch)\n            row.append(fname)\n            if not isinstance(metric, dict):\n                row.append(str(metric))\n                rows.append(row)\n                continue\n            flattened_val = flatten(format_dict(metric))\n\n            for i in header:\n                row.append(_round(flattened_val.get(i)))\n            rows.append(row)\n    header.insert(0, \"Path\")\n    if with_rev:\n        header.insert(0, \"Revision\")\n\n    if missing:\n        raise BadMetricError(missing)\n    return table(header, rows, markdown)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_add_parser_add_parser.metrics_diff_parser.add_argument(\n        \"--targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these metrics files. Using -R, \"\n            \"directories to search metrics files in can also be given.\"\n        ),\n        metavar=\"<paths>\",\n    ).complete.completion_FILE": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_add_parser_add_parser.metrics_diff_parser.add_argument(\n        \"--targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these metrics files. Using -R, \"\n            \"directories to search metrics files in can also be given.\"\n        ),\n        metavar=\"<paths>\",\n    ).complete.completion_FILE", "embedding": null, "metadata": {"file_path": "dvc/command/metrics.py", "file_name": "metrics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 173, "end_line": 287, "span_ids": ["add_parser"], "tokens": 771}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    METRICS_HELP = \"Commands to display and compare metrics.\"\n\n    metrics_parser = subparsers.add_parser(\n        \"metrics\",\n        parents=[parent_parser],\n        description=append_doc_link(METRICS_HELP, \"metrics\"),\n        help=METRICS_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n\n    metrics_subparsers = metrics_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc metrics CMD --help` to display command-specific help.\",\n    )\n\n    fix_subparsers(metrics_subparsers)\n\n    METRICS_SHOW_HELP = \"Print metrics, with optional formatting.\"\n    metrics_show_parser = metrics_subparsers.add_parser(\n        \"show\",\n        parents=[parent_parser],\n        description=append_doc_link(METRICS_SHOW_HELP, \"metrics/show\"),\n        help=METRICS_SHOW_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    metrics_show_parser.add_argument(\n        \"targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these metrics files. Using -R, \"\n            \"directories to search metrics files in can also be given.\"\n        ),\n    ).complete = completion.FILE\n    metrics_show_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show metrics for all branches.\",\n    )\n    metrics_show_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show metrics for all tags.\",\n    )\n    metrics_show_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show metrics for all commits.\",\n    )\n    metrics_show_parser.add_argument(\n        \"--show-json\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show output in JSON format.\",\n    )\n    metrics_show_parser.add_argument(\n        \"--show-md\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show tabulated output in the Markdown format (GFM).\",\n    )\n    metrics_show_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"If any target is a directory, recursively search and process \"\n            \"metrics files.\"\n        ),\n    )\n    metrics_show_parser.add_argument(\n        \"--precision\",\n        type=int,\n        help=(\n            \"Round metrics to `n` digits precision after the decimal point. \"\n            f\"Rounds to {DEFAULT_PRECISION} digits by default.\"\n        ),\n        metavar=\"<n>\",\n    )\n    metrics_show_parser.set_defaults(func=CmdMetricsShow)\n\n    METRICS_DIFF_HELP = (\n        \"Show changes in metrics between commits in the DVC repository, or \"\n        \"between a commit and the workspace.\"\n    )\n    metrics_diff_parser = metrics_subparsers.add_parser(\n        \"diff\",\n        parents=[parent_parser],\n        description=append_doc_link(METRICS_DIFF_HELP, \"metrics/diff\"),\n        help=METRICS_DIFF_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    metrics_diff_parser.add_argument(\n        \"a_rev\", nargs=\"?\", help=\"Old Git commit to compare (defaults to HEAD)\"\n    )\n    metrics_diff_parser.add_argument(\n        \"b_rev\",\n        nargs=\"?\",\n        help=\"New Git commit to compare (defaults to the current workspace)\",\n    )\n    metrics_diff_parser.add_argument(\n        \"--targets\",\n        nargs=\"*\",\n        help=(\n            \"Limit command scope to these metrics files. Using -R, \"\n            \"directories to search metrics files in can also be given.\"\n        ),\n        metavar=\"<paths>\",\n    ).complete = completion.FILE\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/repro.py_argparse_CmdRepro._repro_kwargs.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/repro.py_argparse_CmdRepro._repro_kwargs.return._", "embedding": null, "metadata": {"file_path": "dvc/command/repro.py", "file_name": "repro.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 46, "span_ids": ["CmdRepro.run", "imports", "CmdRepro._repro_kwargs", "CmdRepro"], "tokens": 317}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import CmdBase, append_doc_link\nfrom dvc.command.metrics import _show_metrics\nfrom dvc.command.status import CmdDataStatus\nfrom dvc.dvcfile import PIPELINE_FILE\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdRepro(CmdBase):\n    def run(self):\n        stages = self.repo.reproduce(**self._repro_kwargs)\n        if len(stages) == 0:\n            logger.info(CmdDataStatus.UP_TO_DATE_MSG)\n        else:\n            logger.info(\n                \"Use `dvc push` to send your updates to \" \"remote storage.\"\n            )\n\n        if self.args.metrics:\n            metrics = self.repo.metrics.show()\n            logger.info(_show_metrics(metrics))\n\n        return 0\n\n    @property\n    def _repro_kwargs(self):\n        return {\n            \"targets\": self.args.targets,\n            \"single_item\": self.args.single_item,\n            \"force\": self.args.force,\n            \"dry\": self.args.dry,\n            \"interactive\": self.args.interactive,\n            \"pipeline\": self.args.pipeline,\n            \"all_pipelines\": self.args.all_pipelines,\n            \"run_cache\": not self.args.no_run_cache,\n            \"no_commit\": self.args.no_commit,\n            \"downstream\": self.args.downstream,\n            \"recursive\": self.args.recursive,\n            \"force_downstream\": self.args.force_downstream,\n            \"pull\": self.args.pull,\n            \"glob\": self.args.glob,\n        }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/repro.py_add_arguments_add_arguments.None_13": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/repro.py_add_arguments_add_arguments.None_13", "embedding": null, "metadata": {"file_path": "dvc/command/repro.py", "file_name": "repro.py", "file_type": "text/x-python", "category": "implementation", "start_line": 49, "end_line": 155, "span_ids": ["add_arguments"], "tokens": 616}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_arguments(repro_parser):\n    repro_parser.add_argument(\n        \"targets\",\n        nargs=\"*\",\n        help=f\"Stages to reproduce. '{PIPELINE_FILE}' by default.\",\n    ).complete = completion.DVC_FILE\n    repro_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Reproduce even if dependencies were not changed.\",\n    )\n    repro_parser.add_argument(\n        \"-s\",\n        \"--single-item\",\n        action=\"store_true\",\n        default=False,\n        help=\"Reproduce only single data item without recursive dependencies \"\n        \"check.\",\n    )\n    repro_parser.add_argument(\n        \"-m\",\n        \"--metrics\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show metrics after reproduction.\",\n    )\n    repro_parser.add_argument(\n        \"--dry\",\n        action=\"store_true\",\n        default=False,\n        help=\"Only print the commands that would be executed without \"\n        \"actually executing.\",\n    )\n    repro_parser.add_argument(\n        \"-i\",\n        \"--interactive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Ask for confirmation before reproducing each stage.\",\n    )\n    repro_parser.add_argument(\n        \"-p\",\n        \"--pipeline\",\n        action=\"store_true\",\n        default=False,\n        help=\"Reproduce the whole pipeline that the specified stage file \"\n        \"belongs to.\",\n    )\n    repro_parser.add_argument(\n        \"-P\",\n        \"--all-pipelines\",\n        action=\"store_true\",\n        default=False,\n        help=\"Reproduce all pipelines in the repo.\",\n    )\n    repro_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Reproduce all stages in the specified directory.\",\n    )\n    repro_parser.add_argument(\n        \"--no-run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Execute stage commands even if they have already been run with \"\n            \"the same command/dependencies/outputs/etc before.\"\n        ),\n    )\n    repro_parser.add_argument(\n        \"--force-downstream\",\n        action=\"store_true\",\n        default=False,\n        help=\"Reproduce all descendants of a changed stage even if their \"\n        \"direct dependencies didn't change.\",\n    )\n    repro_parser.add_argument(\n        \"--no-commit\",\n        action=\"store_true\",\n        default=False,\n        help=\"Don't put files/directories into cache.\",\n    )\n    repro_parser.add_argument(\n        \"--downstream\",\n        action=\"store_true\",\n        default=False,\n        help=\"Start from the specified stages when reproducing pipelines.\",\n    )\n    repro_parser.add_argument(\n        \"--pull\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Try automatically pulling missing cache for outputs restored \"\n            \"from the run-cache.\"\n        ),\n    )\n    repro_parser.add_argument(\n        \"--glob\",\n        action=\"store_true\",\n        default=False,\n        help=\"Allows targets containing shell-style wildcards.\",\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_NotDvcRepoError_FileOwnershipError.__init__.super___init___f_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_NotDvcRepoError_FileOwnershipError.__init__.super___init___f_file_", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 127, "end_line": 243, "span_ids": ["FileMissingError.__init__", "ETagMismatchError.__init__", "NoMetricsParsedError.__init__", "MetricsError", "BadMetricError", "FileMissingError", "ConfirmRemoveError", "RecursiveAddingWhileUsingFilename.__init__", "ETagMismatchError", "RecursiveAddingWhileUsingFilename", "CyclicGraphError", "ConfirmRemoveError.__init__", "NoMetricsFoundError", "InitError", "MetricDoesNotExistError.__init__", "DvcParserError.__init__", "ReproductionError.__init__", "FileOwnershipError", "FileOwnershipError.__init__", "NoMetricsParsedError", "CheckoutErrorSuggestGit.__init__", "OverlappingOutputPathsError.__init__", "OverlappingOutputPathsError", "BadMetricError.__init__", "CheckoutErrorSuggestGit", "DvcParserError", "NoMetricsFoundError.__init__", "CyclicGraphError.__init__", "MetricDoesNotExistError", "NotDvcRepoError", "ReproductionError"], "tokens": 764}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class NotDvcRepoError(DvcException):\n    \"\"\"Thrown if a directory is not a DVC repo\"\"\"\n\n\nclass DvcParserError(DvcException):\n    \"\"\"Base class for CLI parser errors.\"\"\"\n\n    def __init__(self):\n        super().__init__(\"parser error\")\n\n\nclass CyclicGraphError(DvcException):\n    def __init__(self, stages):\n        assert isinstance(stages, list)\n        msg = \"Pipeline has a cycle involving: {}.\".format(\n            \", \".join(s.addressing for s in stages)\n        )\n        super().__init__(msg)\n\n\nclass ConfirmRemoveError(DvcException):\n    def __init__(self, path):\n        super().__init__(\n            \"unable to remove '{}' without a confirmation. Use \"\n            \"`-f` to force.\".format(path)\n        )\n\n\nclass InitError(DvcException):\n    pass\n\n\nclass ReproductionError(DvcException):\n    def __init__(self, dvc_file_name):\n        self.path = dvc_file_name\n        super().__init__(f\"failed to reproduce '{dvc_file_name}'\")\n\n\nclass BadMetricError(DvcException):\n    def __init__(self, paths):\n        super().__init__(\n            \"the following metrics do not exist, \"\n            \"are not metrics files or are malformed: {paths}\".format(\n                paths=\", \".join(f\"'{path}'\" for path in paths)\n            )\n        )\n\n\nclass MetricsError(DvcException):\n    pass\n\n\nclass NoMetricsParsedError(MetricsError):\n    def __init__(self, command):\n        super().__init__(\n            f\"Could not parse {command} files. Use `-v` option to see more \"\n            \"details.\"\n        )\n\n\nclass NoMetricsFoundError(MetricsError):\n    def __init__(self, command, run_options):\n        super().__init__(\n            f\"No {command} files in this repository. \"\n            f\"Use `{run_options}` options for \"\n            f\"`dvc run` to mark stage outputs as {command}.\"\n        )\n\n\nclass MetricDoesNotExistError(MetricsError):\n    def __init__(self, targets: List[str]):\n        if len(targets) == 1:\n            msg = \"File: '{}' does not exist.\"\n        else:\n            msg = \"Files: '{}' do not exist.\"\n        super().__init__(msg.format(\", \".join(targets)))\n\n\nclass RecursiveAddingWhileUsingFilename(DvcException):\n    def __init__(self):\n        super().__init__(\n            \"cannot use `fname` with multiple targets or `-R|--recursive`\"\n        )\n\n\nclass OverlappingOutputPathsError(DvcException):\n    def __init__(self, parent, overlapping_out, message):\n        self.parent = parent\n        self.overlapping_out = overlapping_out\n        super().__init__(message)\n\n\nclass CheckoutErrorSuggestGit(DvcException):\n    def __init__(self, target):\n        super().__init__(f\"Did you mean `git checkout {target}`?\")\n\n\nclass ETagMismatchError(DvcException):\n    def __init__(self, etag, cached_etag):\n        super().__init__(\n            \"ETag mismatch detected when copying file to cache! \"\n            \"(expected: '{}', actual: '{}')\".format(etag, cached_etag)\n        )\n\n\nclass FileMissingError(DvcException):\n    def __init__(self, path, hint=None):\n        self.path = path\n        hint = \"\" if hint is None else f\". {hint}\"\n        super().__init__(\n            f\"Can't find '{path}' neither locally nor on remote{hint}\"\n        )\n\n\nclass FileOwnershipError(DvcException):\n    def __init__(self, path):\n        super().__init__(f\"file '{path}' not owned by user! \")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_DvcIgnoreInCollectedDirError_HTTPError.__init__.super___init___f_code": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/exceptions.py_DvcIgnoreInCollectedDirError_HTTPError.__init__.super___init___f_code", "embedding": null, "metadata": {"file_path": "dvc/exceptions.py", "file_name": "exceptions.py", "file_type": "text/x-python", "category": "implementation", "start_line": 246, "end_line": 314, "span_ids": ["DvcIgnoreInCollectedDirError", "NoOutputInExternalRepoError", "GitHookAlreadyExistsError", "DownloadError.__init__", "HTTPError.__init__", "UploadError", "DvcIgnoreInCollectedDirError.__init__", "NoRemoteInExternalRepoError.__init__", "DownloadError", "GitHookAlreadyExistsError.__init__", "UploadError.__init__", "CheckoutError.__init__", "NoRemoteInExternalRepoError", "NoOutputInExternalRepoError.__init__", "CollectCacheError", "HTTPError", "CheckoutError"], "tokens": 440}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnoreInCollectedDirError(DvcException):\n    def __init__(self, ignore_dirname):\n        super().__init__(\n            \".dvcignore file should not be in collected dir path: \"\n            \"'{}'\".format(ignore_dirname)\n        )\n\n\nclass GitHookAlreadyExistsError(DvcException):\n    def __init__(self, hook_name):\n        super().__init__(\n            \"Hook '{}' already exists. Please refer to {} for more \"\n            \"info.\".format(\n                hook_name, format_link(\"https://man.dvc.org/install\")\n            )\n        )\n\n\nclass DownloadError(DvcException):\n    def __init__(self, amount):\n        self.amount = amount\n\n        super().__init__(f\"{amount} files failed to download\")\n\n\nclass UploadError(DvcException):\n    def __init__(self, amount):\n        self.amount = amount\n\n        super().__init__(f\"{amount} files failed to upload\")\n\n\nclass CheckoutError(DvcException):\n    def __init__(self, target_infos, stats=None):\n        self.target_infos = target_infos\n        self.stats = stats\n        targets = [str(t) for t in target_infos]\n        m = (\n            \"Checkout failed for following targets:\\n{}\\nIs your \"\n            \"cache up to date?\\n{}\".format(\n                \"\\n\".join(targets), error_link(\"missing-files\"),\n            )\n        )\n        super().__init__(m)\n\n\nclass CollectCacheError(DvcException):\n    pass\n\n\nclass NoRemoteInExternalRepoError(DvcException):\n    def __init__(self, url):\n        super().__init__(\n            f\"No DVC remote is specified in target repository '{url}'.\"\n        )\n\n\nclass NoOutputInExternalRepoError(DvcException):\n    def __init__(self, path, external_repo_path, external_repo_url):\n        super().__init__(\n            \"Output '{}' not found in target repository '{}'\".format(\n                relpath(path, external_repo_path), external_repo_url\n            )\n        )\n\n\nclass HTTPError(DvcException):\n    def __init__(self, code, reason):\n        super().__init__(f\"'{code} {reason}'\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__unshallow__unshallow.git_pull_unshallow_True_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__unshallow__unshallow.git_pull_unshallow_True_", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 371, "end_line": 381, "span_ids": ["_unshallow"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _unshallow(git):\n    if git.gitpython.repo.head.is_detached:\n        # If this is a detached head (i.e. we shallow cloned a tag) switch to\n        # the default branch\n        origin_refs = git.gitpython.repo.remotes[\"origin\"].refs\n        ref = origin_refs[\"HEAD\"].reference\n        branch_name = ref.name.split(\"/\")[-1]\n        branch = git.gitpython.repo.create_head(branch_name, ref)\n        branch.set_tracking_branch(ref)\n        branch.checkout()\n    git.pull(unshallow=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__git_checkout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py__git_checkout_", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 384, "end_line": 405, "span_ids": ["_git_checkout", "_remove"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _git_checkout(repo_path, rev):\n    logger.debug(\"erepo: git checkout %s@%s\", repo_path, rev)\n    git = Git(repo_path)\n    try:\n        git.checkout(rev)\n    finally:\n        git.close()\n\n\ndef _remove(path):\n    if os.name == \"nt\":\n        # git.exe may hang for a while not permitting to remove temp dir\n        os_retry = retry(5, errors=OSError, timeout=0.1)\n        try:\n            os_retry(remove)(path)\n        except PermissionError:\n            logger.warning(\n                \"Failed to remove '%s'\", relpath(path), exc_info=True\n            )\n    else:\n        remove(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter._update_DvcIgnoreFilter._update.if_not_matches_and_self_t.elif_old_pattern_.self_ignores_trie_tree_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter._update_DvcIgnoreFilter._update.if_not_matches_and_self_t.elif_old_pattern_.self_ignores_trie_tree_di", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 194, "end_line": 219, "span_ids": ["DvcIgnoreFilter._update"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnoreFilter:\n\n    def _update(self, dirname):\n        self._update_sub_repo(dirname)\n\n        old_pattern = self.ignores_trie_tree.longest_prefix(dirname).value\n        matches = old_pattern.matches(dirname, DvcIgnore.DVCIGNORE_FILE, False)\n\n        ignore_file_path = os.path.join(dirname, DvcIgnore.DVCIGNORE_FILE)\n        if not matches and self.tree.exists(\n            ignore_file_path, use_dvcignore=False\n        ):\n            new_pattern = DvcIgnorePatterns.from_files(\n                ignore_file_path, self.tree\n            )\n            if old_pattern:\n                self.ignores_trie_tree[dirname] = DvcIgnorePatterns(\n                    *merge_patterns(\n                        old_pattern.pattern_list,\n                        old_pattern.dirname,\n                        new_pattern.pattern_list,\n                        new_pattern.dirname,\n                    )\n                )\n            else:\n                self.ignores_trie_tree[dirname] = new_pattern\n        elif old_pattern:\n            self.ignores_trie_tree[dirname] = old_pattern", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter._update_sub_repo_DvcIgnoreFilter._update_sub_repo.if_old_pattern_.else_.self_ignores_trie_tree_ro": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/ignore.py_DvcIgnoreFilter._update_sub_repo_DvcIgnoreFilter._update_sub_repo.if_old_pattern_.else_.self_ignores_trie_tree_ro", "embedding": null, "metadata": {"file_path": "dvc/ignore.py", "file_name": "ignore.py", "file_type": "text/x-python", "category": "implementation", "start_line": 221, "end_line": 248, "span_ids": ["DvcIgnoreFilter._update_sub_repo"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DvcIgnoreFilter:\n\n    def _update_sub_repo(self, path):\n        from dvc.repo import Repo\n\n        if path == self.root_dir:\n            return\n\n        dvc_dir = os.path.join(path, Repo.DVC_DIR)\n        if not os.path.exists(dvc_dir):\n            return\n\n        root, dname = os.path.split(path)\n        self._ignored_subrepos[root] = self._ignored_subrepos.get(\n            root, set()\n        ) | {dname}\n        pattern_info = PatternInfo(f\"/{dname}/\", f\"in sub_repo:{dname}\")\n        new_pattern = DvcIgnorePatterns([pattern_info], root)\n        old_pattern = self.ignores_trie_tree.longest_prefix(root).value\n        if old_pattern:\n            self.ignores_trie_tree[root] = DvcIgnorePatterns(\n                *merge_patterns(\n                    old_pattern.pattern_list,\n                    old_pattern.dirname,\n                    new_pattern.pattern_list,\n                    new_pattern.dirname,\n                )\n            )\n        else:\n            self.ignores_trie_tree[root] = new_pattern", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_from_collections_import_d_SCHEMA_BaseOutput_PARAM_I": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/__init__.py_from_collections_import_d_SCHEMA_BaseOutput_PARAM_I", "embedding": null, "metadata": {"file_path": "dvc/output/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 72, "span_ids": ["imports", "impl:15"], "tokens": 585}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from collections import defaultdict\nfrom urllib.parse import urlparse\n\nfrom funcy import collecting, project\nfrom voluptuous import And, Any, Coerce, Length, Lower, Required, SetTo\n\nfrom dvc.hash_info import HashInfo\nfrom dvc.output.base import BaseOutput\nfrom dvc.output.gs import GSOutput\nfrom dvc.output.hdfs import HDFSOutput\nfrom dvc.output.local import LocalOutput\nfrom dvc.output.s3 import S3Output\nfrom dvc.output.ssh import SSHOutput\nfrom dvc.output.webhdfs import WebHDFSOutput\nfrom dvc.scheme import Schemes\n\nfrom ..tree import get_cloud_tree\nfrom ..tree.hdfs import HDFSTree\nfrom ..tree.local import LocalTree\nfrom ..tree.s3 import S3Tree\nfrom ..tree.webhdfs import WebHDFSTree\n\nOUTS = [\n    HDFSOutput,\n    S3Output,\n    GSOutput,\n    SSHOutput,\n    WebHDFSOutput,\n    # NOTE: LocalOutput is the default choice\n]\n\nOUTS_MAP = {\n    Schemes.HDFS: HDFSOutput,\n    Schemes.S3: S3Output,\n    Schemes.GS: GSOutput,\n    Schemes.SSH: SSHOutput,\n    Schemes.LOCAL: LocalOutput,\n    Schemes.WEBHDFS: WebHDFSOutput,\n}\n\nCHECKSUM_SCHEMA = Any(\n    None,\n    And(str, Length(max=0), SetTo(None)),\n    And(Any(str, And(int, Coerce(str))), Length(min=3), Lower),\n)\n\n# NOTE: currently there are only 3 possible checksum names:\n#\n#    1) md5 (LOCAL, SSH, GS);\n#    2) etag (S3);\n#    3) checksum (HDFS);\n#\n# so when a few types of outputs share the same name, we only need\n# specify it once.\nCHECKSUMS_SCHEMA = {\n    LocalTree.PARAM_CHECKSUM: CHECKSUM_SCHEMA,\n    S3Tree.PARAM_CHECKSUM: CHECKSUM_SCHEMA,\n    HDFSTree.PARAM_CHECKSUM: CHECKSUM_SCHEMA,\n    WebHDFSTree.PARAM_CHECKSUM: CHECKSUM_SCHEMA,\n}\n\nSCHEMA = CHECKSUMS_SCHEMA.copy()\nSCHEMA[Required(BaseOutput.PARAM_PATH)] = str\nSCHEMA[BaseOutput.PARAM_CACHE] = bool\nSCHEMA[BaseOutput.PARAM_METRIC] = BaseOutput.METRIC_SCHEMA\nSCHEMA[BaseOutput.PARAM_PLOT] = bool\nSCHEMA[BaseOutput.PARAM_PERSIST] = bool\nSCHEMA[BaseOutput.PARAM_CHECKPOINT] = bool\nSCHEMA[HashInfo.PARAM_SIZE] = int\nSCHEMA[HashInfo.PARAM_NFILES] = int\nSCHEMA[BaseOutput.PARAM_DESC] = str\nSCHEMA[BaseOutput.PARAM_ISEXEC] = bool", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput_BaseOutput.dir_cache.return.self_cache_get_dir_cache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput_BaseOutput.dir_cache.return.self_cache_get_dir_cache_", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 58, "end_line": 178, "span_ids": ["BaseOutput.__init__", "BaseOutput.scheme", "BaseOutput.__repr__", "BaseOutput._parse_path", "BaseOutput.dir_cache", "BaseOutput.is_in_repo", "BaseOutput.use_scm_ignore", "BaseOutput", "BaseOutput.__str__", "BaseOutput.cache"], "tokens": 845}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n    IS_DEPENDENCY = False\n\n    TREE_CLS = BaseTree\n\n    PARAM_PATH = \"path\"\n    PARAM_CACHE = \"cache\"\n    PARAM_CHECKPOINT = \"checkpoint\"\n    PARAM_METRIC = \"metric\"\n    PARAM_METRIC_TYPE = \"type\"\n    PARAM_METRIC_XPATH = \"xpath\"\n    PARAM_PLOT = \"plot\"\n    PARAM_PLOT_TEMPLATE = \"template\"\n    PARAM_PLOT_X = \"x\"\n    PARAM_PLOT_Y = \"y\"\n    PARAM_PLOT_X_LABEL = \"x_label\"\n    PARAM_PLOT_Y_LABEL = \"y_label\"\n    PARAM_PLOT_TITLE = \"title\"\n    PARAM_PLOT_HEADER = \"header\"\n    PARAM_PERSIST = \"persist\"\n    PARAM_DESC = \"desc\"\n    PARAM_ISEXEC = \"isexec\"\n\n    METRIC_SCHEMA = Any(\n        None,\n        bool,\n        {\n            PARAM_METRIC_TYPE: Any(str, None),\n            PARAM_METRIC_XPATH: Any(str, None),\n        },\n    )\n\n    DoesNotExistError = OutputDoesNotExistError  # type: Type[DvcException]\n    IsNotFileOrDirError = OutputIsNotFileOrDirError  # type: Type[DvcException]\n    IsStageFileError = OutputIsStageFileError  # type: Type[DvcException]\n    IsIgnoredError = OutputIsIgnoredError  # type: Type[DvcException]\n\n    sep = \"/\"\n\n    def __init__(\n        self,\n        stage,\n        path,\n        info=None,\n        tree=None,\n        cache=True,\n        metric=False,\n        plot=False,\n        persist=False,\n        checkpoint=False,\n        desc=None,\n        isexec=False,\n    ):\n        self._validate_output_path(path, stage)\n        # This output (and dependency) objects have too many paths/urls\n        # here is a list and comments:\n        #\n        #   .def_path - path from definition in stage file\n        #   .path_info - PathInfo/URLInfo structured resolved path\n        #   .fspath - local only, resolved\n        #   .__str__ - for presentation purposes, def_path/relpath\n        #\n        # By resolved path, which contains actual location,\n        # should be absolute and don't contain remote:// refs.\n        self.stage = stage\n        self.repo = stage.repo if stage else None\n        self.def_path = path\n        self.hash_info = HashInfo.from_dict(info)\n        if tree:\n            self.tree = tree\n        else:\n            self.tree = self.TREE_CLS(self.repo, {})\n        self.use_cache = False if self.IS_DEPENDENCY else cache\n        self.metric = False if self.IS_DEPENDENCY else metric\n        self.plot = False if self.IS_DEPENDENCY else plot\n        self.persist = persist\n        self.checkpoint = checkpoint\n        self.desc = desc\n\n        self.path_info = self._parse_path(tree, path)\n        if self.use_cache and self.cache is None:\n            raise RemoteCacheRequiredError(self.path_info)\n\n        self.isexec = False if self.IS_DEPENDENCY else isexec\n\n    def _parse_path(self, tree, path):\n        if tree:\n            parsed = urlparse(path)\n            return tree.path_info / parsed.path.lstrip(\"/\")\n        return self.TREE_CLS.PATH_CLS(path)\n\n    def __repr__(self):\n        return \"{class_name}: '{def_path}'\".format(\n            class_name=type(self).__name__, def_path=self.def_path\n        )\n\n    def __str__(self):\n        return self.def_path\n\n    @property\n    def scheme(self):\n        return self.TREE_CLS.scheme\n\n    @property\n    def is_in_repo(self):\n        return False\n\n    @property\n    def use_scm_ignore(self):\n        if not self.is_in_repo:\n            return False\n\n        return self.use_cache or self.stage.is_repo_import\n\n    @property\n    def cache(self):\n        return getattr(self.repo.cache, self.scheme)\n\n    @property\n    def dir_cache(self):\n        return self.cache.get_dir_cache(self.hash_info)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.supported_BaseOutput._pylint_enable_no_membe": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.supported_BaseOutput._pylint_enable_no_membe", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 180, "end_line": 262, "span_ids": ["BaseOutput.is_empty", "BaseOutput.isfile", "BaseOutput.supported", "BaseOutput.isdir", "BaseOutput.changed", "BaseOutput.ignore", "BaseOutput.changed_cache", "BaseOutput.status", "BaseOutput.cache_path", "BaseOutput.ignore_remove", "BaseOutput.workspace_status", "BaseOutput.get_hash", "BaseOutput.changed_checksum", "BaseOutput.is_dir_checksum", "BaseOutput.exists"], "tokens": 442}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    @classmethod\n    def supported(cls, url):\n        return cls.TREE_CLS.supported(url)\n\n    @property\n    def cache_path(self):\n        return self.cache.tree.hash_to_path_info(self.hash_info.value).url\n\n    def get_hash(self):\n        if not self.use_cache:\n            return self.tree.get_hash(self.path_info)\n        return self.cache.get_hash(self.tree, self.path_info)\n\n    @property\n    def is_dir_checksum(self):\n        return self.hash_info.isdir\n\n    @property\n    def exists(self):\n        return self.tree.exists(self.path_info)\n\n    def changed_checksum(self):\n        return self.hash_info != self.get_hash()\n\n    def changed_cache(self, filter_info=None):\n        if not self.use_cache or not self.hash_info:\n            return True\n\n        return self.cache.changed_cache(\n            self.hash_info, filter_info=filter_info\n        )\n\n    def workspace_status(self):\n        if not self.exists:\n            return {str(self): \"deleted\"}\n\n        if self.changed_checksum():\n            return {str(self): \"modified\"}\n\n        if not self.hash_info:\n            return {str(self): \"new\"}\n\n        return {}\n\n    def status(self):\n        if self.hash_info and self.use_cache and self.changed_cache():\n            return {str(self): \"not in cache\"}\n\n        return self.workspace_status()\n\n    def changed(self):\n        status = self.status()\n        logger.debug(str(status))\n        return bool(status)\n\n    @property\n    def is_empty(self):\n        return self.tree.is_empty(self.path_info)\n\n    def isdir(self):\n        return self.tree.isdir(self.path_info)\n\n    def isfile(self):\n        return self.tree.isfile(self.path_info)\n\n    # pylint: disable=no-member\n\n    def ignore(self):\n        if not self.use_scm_ignore:\n            return\n\n        if self.repo.scm.is_tracked(self.fspath):\n            raise OutputAlreadyTrackedError(self)\n\n        self.repo.scm.ignore(self.fspath)\n\n    def ignore_remove(self):\n        if not self.use_scm_ignore:\n            return\n\n        self.repo.scm.ignore_remove(self.fspath)\n\n    # pylint: enable=no-member", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.save_BaseOutput.commit.if_self_use_cache_.self_set_exec_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.save_BaseOutput.commit.if_self_use_cache_.self_set_exec_", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 264, "end_line": 307, "span_ids": ["BaseOutput.save", "BaseOutput.commit", "BaseOutput.set_exec"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    def save(self):\n        if not self.exists:\n            raise self.DoesNotExistError(self)\n\n        if not self.isfile and not self.isdir:\n            raise self.IsNotFileOrDirError(self)\n\n        if self.is_empty:\n            logger.warning(f\"'{self}' is empty.\")\n\n        self.ignore()\n\n        if self.metric or self.plot:\n            self.verify_metric()\n\n        if not self.use_cache:\n            self.hash_info = self.get_hash()\n            if not self.IS_DEPENDENCY:\n                logger.debug(\n                    \"Output '%s' doesn't use cache. Skipping saving.\", self\n                )\n            return\n\n        assert not self.IS_DEPENDENCY\n\n        if not self.changed():\n            logger.debug(\"Output '%s' didn't change. Skipping saving.\", self)\n            return\n\n        self.hash_info = self.get_hash()\n        self.isexec = self.isfile() and self.tree.isexec(self.path_info)\n\n    def set_exec(self):\n        if self.isfile() and self.isexec:\n            self.tree.set_exec(self.path_info)\n\n    def commit(self):\n        if not self.exists:\n            raise self.DoesNotExistError(self)\n\n        assert self.hash_info\n        if self.use_cache:\n            self.cache.save(self.path_info, self.cache.tree, self.hash_info)\n            self.set_exec()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.verify_metric_BaseOutput.checkout.return.res": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/output/base.py_BaseOutput.verify_metric_BaseOutput.checkout.return.res", "embedding": null, "metadata": {"file_path": "dvc/output/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 346, "end_line": 383, "span_ids": ["BaseOutput.checkout", "BaseOutput.download", "BaseOutput.verify_metric"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseOutput:\n\n    def verify_metric(self):\n        raise DvcException(f\"verify metric is not supported for {self.scheme}\")\n\n    def download(self, to, jobs=None):\n        self.tree.download(self.path_info, to.path_info, jobs=jobs)\n\n    def checkout(\n        self,\n        force=False,\n        progress_callback=None,\n        relink=False,\n        filter_info=None,\n        allow_missing=False,\n        **kwargs,\n    ):\n        if not self.use_cache:\n            if progress_callback:\n                progress_callback(\n                    str(self.path_info), self.get_files_number(filter_info)\n                )\n            return None\n\n        try:\n            res = self.cache.checkout(\n                self.path_info,\n                self.hash_info,\n                force=force,\n                progress_callback=progress_callback,\n                relink=relink,\n                filter_info=filter_info,\n                **kwargs,\n            )\n        except CheckoutError:\n            if allow_missing or self.checkpoint:\n                return None\n            raise\n        self.set_exec()\n        return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_format_and_raise_format_and_raise._reraise_err_ResolveError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_format_and_raise_format_and_raise._reraise_err_ResolveError", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 59, "end_line": 69, "span_ids": ["format_and_raise"], "tokens": 110}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def format_and_raise(exc, msg, path):\n    spacing = (\n        \"\\n\"\n        if isinstance(exc, (ParseError, MergeError, VarsAlreadyLoaded))\n        else \" \"\n    )\n    message = _format_preamble(msg, path, spacing) + str(exc)\n\n    # FIXME: cannot reraise because of how we log \"cause\" of the exception\n    # the error message is verbose, hence need control over the spacing\n    _reraise_err(ResolveError, message, from_exc=exc)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py__reraise_err_make_definition.return.EntryDefinition_args_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py__reraise_err_make_definition.return.EntryDefinition_args_", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 72, "end_line": 120, "span_ids": ["impl:22", "split_foreach_name", "_reraise_err", "make_definition", "check_interpolations", "check_syntax_errors", "is_map_or_seq"], "tokens": 334}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _reraise_err(exc_cls, *args, from_exc=None):\n    err = exc_cls(*args)\n    if from_exc and logger.isEnabledFor(logging.DEBUG):\n        raise err from from_exc\n    raise err\n\n\ndef check_syntax_errors(\n    definition: dict, name: str, path: str, where: str = \"stages\"\n):\n    for key, d in definition.items():\n        try:\n            check_recursive_parse_errors(d)\n        except ParseError as exc:\n            format_and_raise(exc, f\"'{where}.{name}.{key}'\", path)\n\n\ndef is_map_or_seq(data):\n    _is_map_or_seq = isa(Mapping, Sequence)\n    return not isinstance(data, str) and _is_map_or_seq(data)\n\n\ndef split_foreach_name(name):\n    group, *keys = name.rsplit(JOIN, maxsplit=1)\n    return group, first(keys)\n\n\ndef check_interpolations(data, where, path):\n    def func(s):\n        if is_interpolated_string(s):\n            raise ResolveError(\n                _format_preamble(f\"'{where}'\", path)\n                + \"interpolating is not allowed\"\n            )\n\n    return recurse(func)(data)\n\n\nDefinition = Union[\"ForeachDefinition\", \"EntryDefinition\"]\nDictStr = Dict[str, Any]\n\n\ndef make_definition(\n    resolver: \"DataResolver\", name: str, definition: DictStr, **kwargs\n) -> Definition:\n    args = resolver, resolver.context, name, definition\n    if FOREACH_KWD in definition:\n        return ForeachDefinition(*args, **kwargs)\n    return EntryDefinition(*args, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_DataResolver_DataResolver.__init__.self.definitions._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_DataResolver_DataResolver.__init__.self.definitions._", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 123, "end_line": 150, "span_ids": ["DataResolver.__init__", "DataResolver"], "tokens": 281}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DataResolver:\n    def __init__(self, repo: \"Repo\", wdir: PathInfo, d: dict):\n        self.tree = tree = repo.tree\n        self.wdir = wdir\n        self.relpath = relpath(self.wdir / \"dvc.yaml\")\n\n        vars_ = d.get(VARS_KWD, [])\n        check_interpolations(vars_, VARS_KWD, self.relpath)\n        self.context: Context = Context()\n\n        try:\n            args = tree, vars_, wdir  # load from `vars` section\n            self.context.load_from_vars(*args, default=DEFAULT_PARAMS_FILE)\n        except ContextError as exc:\n            format_and_raise(exc, \"'vars'\", self.relpath)\n\n        # we use `tracked_vars` to keep a dictionary of used variables\n        # by the interpolated entries.\n        self.tracked_vars: Dict[str, Mapping] = {}\n\n        stages_data = d.get(STAGES_KWD, {})\n        # we wrap the definitions into ForeachDefinition and EntryDefinition,\n        # that helps us to optimize, cache and selectively load each one of\n        # them as we need, and simplify all of this DSL/parsing logic.\n        self.definitions: Dict[str, Definition] = {\n            name: make_definition(self, name, definition)\n            for name, definition in stages_data.items()\n        }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_DataResolver.resolve_one_DataResolver.resolve_one.return.definition_resolve_one_ke": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_DataResolver.resolve_one_DataResolver.resolve_one.return.definition_resolve_one_ke", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 152, "end_line": 164, "span_ids": ["DataResolver.resolve_one"], "tokens": 129}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DataResolver:\n\n    def resolve_one(self, name):\n        group, key = split_foreach_name(name)\n\n        if not self._has_group_and_key(group, key):\n            raise EntryNotFound(f\"Could not find '{name}'\")\n\n        # all of the checks for `key` not being None for `ForeachDefinition`\n        # and/or `group` not existing in the `interim`, etc. should be\n        # handled by the `self.has_key()` above.\n        definition = self.definitions[group]\n        if isinstance(definition, EntryDefinition):\n            return definition.resolve()\n        return definition.resolve_one(key)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_DataResolver.resolve_DataResolver.track_vars.self_tracked_vars_name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_DataResolver.resolve_DataResolver.track_vars.self_tracked_vars_name_", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 166, "end_line": 198, "span_ids": ["DataResolver.resolve", "DataResolver.has_key", "DataResolver.track_vars", "DataResolver.get_keys", "DataResolver._has_group_and_key"], "tokens": 229}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DataResolver:\n\n    def resolve(self):\n        \"\"\"Used for testing purposes, otherwise use resolve_one().\"\"\"\n        data = join(map(self.resolve_one, self.get_keys()))\n        logger.trace(  # type: ignore[attr-defined]\n            \"Resolved dvc.yaml:\\n%s\", data\n        )\n        return {STAGES_KWD: data}\n\n    def has_key(self, key):\n        return self._has_group_and_key(*split_foreach_name(key))\n\n    def _has_group_and_key(self, group, key=None):\n        try:\n            definition = self.definitions[group]\n        except KeyError:\n            return False\n\n        if key:\n            return isinstance(\n                definition, ForeachDefinition\n            ) and definition.has_member(key)\n        return not isinstance(definition, ForeachDefinition)\n\n    @collecting\n    def get_keys(self):\n        for name, definition in self.definitions.items():\n            if isinstance(definition, ForeachDefinition):\n                yield from definition.get_generated_names()\n                continue\n            yield name\n\n    def track_vars(self, name, vars_):\n        self.tracked_vars[name] = vars_", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_EntryDefinition_EntryDefinition.resolve.try_.except_ContextError_as_ex.format_and_raise_exc_f_s": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_EntryDefinition_EntryDefinition.resolve.try_.except_ContextError_as_ex.format_and_raise_exc_f_s", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 201, "end_line": 234, "span_ids": ["EntryDefinition.__init__", "EntryDefinition.resolve", "EntryDefinition._resolve_wdir", "EntryDefinition"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class EntryDefinition:\n    def __init__(\n        self,\n        resolver: DataResolver,\n        context: Context,\n        name: str,\n        definition: dict,\n        where: str = STAGES_KWD,\n    ):\n        self.resolver = resolver\n        self.wdir = self.resolver.wdir\n        self.relpath = self.resolver.relpath\n        self.context = context\n        self.name = name\n        self.definition = definition\n        self.where = where\n\n    def _resolve_wdir(\n        self, context: Context, name: str, wdir: str = None\n    ) -> PathInfo:\n        if not wdir:\n            return self.wdir\n\n        try:\n            wdir = to_str(context.resolve_str(wdir, unwrap=True))\n        except (ContextError, ParseError) as exc:\n            format_and_raise(exc, f\"'{self.where}.{name}.wdir'\", self.relpath)\n        return self.wdir / wdir\n\n    def resolve(self, **kwargs):\n        try:\n            return self.resolve_stage(**kwargs)\n        except ContextError as exc:\n            format_and_raise(exc, f\"stage '{self.name}'\", self.relpath)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_EntryDefinition.resolve_stage_EntryDefinition._resolve.try_.except_ParseError_KeyNo.format_and_raise_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_EntryDefinition.resolve_stage_EntryDefinition._resolve.try_.except_ParseError_KeyNo.format_and_raise_", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 236, "end_line": 290, "span_ids": ["EntryDefinition._resolve", "EntryDefinition.resolve_stage"], "tokens": 517}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class EntryDefinition:\n\n    def resolve_stage(self, skip_checks=False):\n        context = self.context\n        name = self.name\n        if not skip_checks:\n            # we can check for syntax errors as we go for interpolated entries,\n            # but for foreach-generated ones, once is enough, which it does\n            # that itself. See `ForeachDefinition.do_definition`.\n            check_syntax_errors(self.definition, name, self.relpath)\n\n        # we need to pop vars from generated/evaluated data\n        definition = deepcopy(self.definition)\n\n        wdir = self._resolve_wdir(context, name, definition.get(WDIR_KWD))\n        vars_ = definition.pop(VARS_KWD, [])\n        # FIXME: Should `vars` be templatized?\n        check_interpolations(vars_, f\"{self.where}.{name}.vars\", self.relpath)\n        if vars_:\n            # Optimization: Lookahead if it has any vars, if it does not, we\n            # don't need to clone them.\n            context = Context.clone(context)\n\n        try:\n            tree = self.resolver.tree\n            context.load_from_vars(tree, vars_, wdir, stage_name=name)\n        except VarsAlreadyLoaded as exc:\n            format_and_raise(exc, f\"'{self.where}.{name}.vars'\", self.relpath)\n\n        logger.trace(  # type: ignore[attr-defined]\n            \"Context during resolution of stage %s:\\n%s\", name, context\n        )\n\n        with context.track() as tracked_data:\n            # NOTE: we do not pop \"wdir\", and resolve it again\n            # this does not affect anything and is done to try to\n            # track the source of `wdir` interpolation.\n            # This works because of the side-effect that we do not\n            # allow overwriting and/or str interpolating complex objects.\n            # Fix if/when those assumptions are no longer valid.\n            resolved = {\n                key: self._resolve(context, value, key, skip_checks)\n                for key, value in definition.items()\n            }\n\n        self.resolver.track_vars(name, tracked_data)\n        return {name: resolved}\n\n    def _resolve(self, context, value, key, skip_checks):\n        try:\n            return context.resolve(\n                value, skip_interpolation_checks=skip_checks\n            )\n        except (ParseError, KeyNotInContext) as exc:\n            format_and_raise(\n                exc, f\"'{self.where}.{self.name}.{key}'\", self.relpath\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_IterationPair_ForeachDefinition.resolved_iterable.return.self__resolve_foreach_dat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_IterationPair_ForeachDefinition.resolved_iterable.return.self__resolve_foreach_dat", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 293, "end_line": 327, "span_ids": ["ForeachDefinition", "ForeachDefinition.resolved_iterable", "IterationPair", "ForeachDefinition.__init__", "ForeachDefinition.do_definition"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class IterationPair(NamedTuple):\n    key: str = \"key\"\n    value: str = \"item\"\n\n\nclass ForeachDefinition:\n    def __init__(\n        self,\n        resolver: DataResolver,\n        context: Context,\n        name: str,\n        definition: dict,\n        where: str = STAGES_KWD,\n    ):\n        self.resolver = resolver\n        self.relpath = self.resolver.relpath\n        self.context = context\n        self.name = name\n\n        assert DO_KWD in definition\n        self.foreach_data = definition[FOREACH_KWD]\n        self._do_definition = definition[DO_KWD]\n\n        self.pair = IterationPair()\n        self.where = where\n\n    @cached_property\n    def do_definition(self):\n        # optimization: check for syntax errors only once for `foreach` stages\n        check_syntax_errors(self._do_definition, self.name, self.relpath)\n        return self._do_definition\n\n    @cached_property\n    def resolved_iterable(self):\n        return self._resolve_foreach_data()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition._resolve_foreach_data_ForeachDefinition._resolve_foreach_data.return.iterable": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition._resolve_foreach_data_ForeachDefinition._resolve_foreach_data.return.iterable", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 329, "end_line": 344, "span_ids": ["ForeachDefinition._resolve_foreach_data"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ForeachDefinition:\n\n    def _resolve_foreach_data(self):\n        try:\n            iterable = self.context.resolve(self.foreach_data, unwrap=False)\n        except (ContextError, ParseError) as exc:\n            format_and_raise(\n                exc, f\"'{self.where}.{self.name}.foreach'\", self.relpath\n            )\n\n        # foreach data can be a resolved dictionary/list.\n        self._check_is_map_or_seq(iterable)\n        # foreach stages will have `item` and `key` added to the context\n        # so, we better warn them if they have them already in the context\n        # from the global vars. We could add them in `set_temporarily`, but\n        # that'd make it display for each iteration.\n        self._warn_if_overwriting(self._inserted_keys(iterable))\n        return iterable", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition._check_is_map_or_seq_ForeachDefinition._inserted_keys.return.keys": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition._check_is_map_or_seq_ForeachDefinition._inserted_keys.return.keys", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 346, "end_line": 371, "span_ids": ["ForeachDefinition._inserted_keys", "ForeachDefinition._check_is_map_or_seq", "ForeachDefinition._warn_if_overwriting"], "tokens": 226}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ForeachDefinition:\n\n    def _check_is_map_or_seq(self, iterable):\n        if not is_map_or_seq(iterable):\n            node = iterable.value if isinstance(iterable, Node) else iterable\n            typ = type(node).__name__\n            raise ResolveError(\n                f\"failed to resolve '{self.where}.{self.name}.foreach'\"\n                f\" in '{self.relpath}': expected list/dictionary, got \" + typ\n            )\n\n    def _warn_if_overwriting(self, keys):\n        warn_for = [k for k in keys if k in self.context]\n        if warn_for:\n            linking_verb = \"is\" if len(warn_for) == 1 else \"are\"\n            logger.warning(\n                \"%s %s already specified, \"\n                \"will be overwritten for stages generated from '%s'\",\n                \" and \".join(warn_for),\n                linking_verb,\n                self.name,\n            )\n\n    def _inserted_keys(self, iterable):\n        keys = [self.pair.value]\n        if isinstance(iterable, Mapping):\n            keys.append(self.pair.key)\n        return keys", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition.normalized_iterable_ForeachDefinition.resolve_one.return.self__each_iter_key_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition.normalized_iterable_ForeachDefinition.resolve_one.return.self__each_iter_key_", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 373, "end_line": 401, "span_ids": ["ForeachDefinition.resolve_one", "ForeachDefinition.get_generated_names", "ForeachDefinition.normalized_iterable", "ForeachDefinition._generate_name", "ForeachDefinition.has_member", "ForeachDefinition.resolve_all"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ForeachDefinition:\n\n    @cached_property\n    def normalized_iterable(self):\n        \"\"\"Convert sequence to Mapping with keys normalized.\"\"\"\n        iterable = self.resolved_iterable\n        if isinstance(iterable, Mapping):\n            return iterable\n\n        assert isinstance(iterable, Sequence)\n        if any(map(is_map_or_seq, iterable)):\n            # if the list contains composite data, index are the keys\n            return {to_str(idx): value for idx, value in enumerate(iterable)}\n\n        # for simple lists, eg: [\"foo\", \"bar\"],  contents are the key itself\n        return {to_str(value): value for value in iterable}\n\n    def has_member(self, key):\n        return key in self.normalized_iterable\n\n    def get_generated_names(self):\n        return list(map(self._generate_name, self.normalized_iterable))\n\n    def _generate_name(self, key):\n        return f\"{self.name}{JOIN}{key}\"\n\n    def resolve_all(self):\n        return join(map(self.resolve_one, self.normalized_iterable))\n\n    def resolve_one(self, key):\n        return self._each_iter(key)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition._each_iter_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/__init__.py_ForeachDefinition._each_iter_", "embedding": null, "metadata": {"file_path": "dvc/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 403, "end_line": 436, "span_ids": ["ForeachDefinition._each_iter"], "tokens": 327}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ForeachDefinition:\n\n    def _each_iter(self, key):\n        err_message = f\"Could not find '{key}' in foreach group '{self.name}'\"\n        with reraise(KeyError, EntryNotFound(err_message)):\n            value = self.normalized_iterable[key]\n\n        # NOTE: we need to use resolved iterable/foreach-data,\n        # not the normalized ones to figure out whether to make item/key\n        # available\n        inserted = self._inserted_keys(self.resolved_iterable)\n        temp_dict = {self.pair.value: value}\n        key_str = self.pair.key\n        if key_str in inserted:\n            temp_dict[key_str] = key\n\n        with self.context.set_temporarily(temp_dict, reserve=True):\n            # optimization: item and key can be removed on __exit__() as they\n            # are top-level values, and are not merged recursively.\n            # This helps us avoid cloning context, which is slower\n            # (increasing the size of the context might increase\n            # the no. of items to be generated which means more cloning,\n            # i.e. quadratic complexity).\n            generated = self._generate_name(key)\n            entry = EntryDefinition(\n                self.resolver, self.context, generated, self.do_definition\n            )\n            try:\n                # optimization: skip checking for syntax errors on each foreach\n                # generated stages. We do it once when accessing do_definition.\n                return entry.resolve_stage(skip_checks=True)\n            except ContextError as exc:\n                format_and_raise(\n                    exc, f\"stage '{generated}'\", self.relpath,\n                )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_logging_ReservedKeyError.__init__.super___init___msg_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_logging_ReservedKeyError.__init__.super___init___msg_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 44, "span_ids": ["ContextError", "imports", "ReservedKeyError.__init__", "ReservedKeyError"], "tokens": 276}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nfrom abc import ABC, abstractmethod\nfrom collections import defaultdict\nfrom collections.abc import Mapping, MutableMapping, MutableSequence, Sequence\nfrom contextlib import contextmanager\nfrom copy import deepcopy\nfrom dataclasses import dataclass, field, replace\nfrom typing import Any, List, Optional, Union\n\nfrom funcy import identity, lfilter, nullcontext, select\n\nfrom dvc.exceptions import DvcException\nfrom dvc.parsing.interpolate import (\n    get_expression,\n    get_matches,\n    is_exact_string,\n    normalize_key,\n    recurse,\n    str_interpolate,\n)\nfrom dvc.path_info import PathInfo\nfrom dvc.utils import relpath\nfrom dvc.utils.humanize import join\nfrom dvc.utils.serialize import LOADERS\n\nlogger = logging.getLogger(__name__)\nSeqOrMap = Union[Sequence, Mapping]\n\n\nclass ContextError(DvcException):\n    pass\n\n\nclass ReservedKeyError(ContextError):\n    def __init__(self, keys, path=None):\n        self.keys = keys\n        self.path = path\n\n        n = \"key\" + (\"s\" if len(keys) > 1 else \"\")\n        msg = f\"attempted to modify reserved {n} {join(keys)}\"\n        if path:\n            msg += f\" in '{path}'\"\n        super().__init__(msg)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_CtxList_CtxList.__deepcopy__.return.new": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_CtxList_CtxList.__deepcopy__.return.new", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 234, "end_line": 256, "span_ids": ["CtxList.__deepcopy__", "CtxList.get_sources", "CtxList", "CtxList.insert", "CtxList.__init__", "CtxList.value"], "tokens": 165}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CtxList(Container, MutableSequence):\n    _key_transform = staticmethod(int)\n\n    def __init__(self, values: Sequence, meta: Meta = None):\n        super().__init__(meta=meta)\n        self.data: list = []\n        self.extend(values)\n\n    def insert(self, index: int, value):\n        self.data.insert(index, self._convert(index, value))\n\n    def get_sources(self):\n        return {self.meta.source: self.meta.path()}\n\n    @property\n    def value(self):\n        return [node.value for node in self]\n\n    def __deepcopy__(self, _):\n        # optimization: we don't support overriding a list\n        new = CtxList([])\n        new.data = self.data[:]  # shortcircuting __setitem__\n        return new", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_CtxDict_CtxDict.__deepcopy__.return.new": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_CtxDict_CtxDict.__deepcopy__.return.new", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 259, "end_line": 288, "span_ids": ["CtxDict", "CtxDict.merge_update", "CtxDict.__setitem__", "CtxDict.value", "CtxDict.__init__", "CtxDict.__deepcopy__"], "tokens": 217}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CtxDict(Container, MutableMapping):\n    def __init__(self, mapping: Mapping = None, meta: Meta = None, **kwargs):\n        super().__init__(meta=meta)\n\n        self.data: dict = {}\n        if mapping:\n            self.update(mapping)\n        self.update(kwargs)\n\n    def __setitem__(self, key, value):\n        if not isinstance(key, str):\n            # limitation for the interpolation\n            # ignore other kinds of keys\n            return\n        return super().__setitem__(key, value)\n\n    def merge_update(self, other, overwrite=False):\n        _merge(self, other, overwrite=overwrite)\n\n    @property\n    def value(self):\n        return {key: node.value for key, node in self.items()}\n\n    def __deepcopy__(self, _):\n        new = CtxDict()\n        for k, v in self.items():\n            new.data[k] = (\n                deepcopy(v) if isinstance(v, Container) else v\n            )  # shortcircuting __setitem__\n        return new", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context_Context._track_data.for_source_keys_in_node_.params_file_update_key_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context_Context._track_data.for_source_keys_in_node_.params_file_update_key_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 291, "end_line": 322, "span_ids": ["Context._track_data", "Context.track", "Context.__init__", "Context"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n    def __init__(self, *args, **kwargs):\n        \"\"\"\n        Top level mutable dict, with some helpers to create context and track\n        \"\"\"\n        super().__init__(*args, **kwargs)\n        self._track = False\n        self._tracked_data = defaultdict(dict)\n        self.imports = {}\n        self._reserved_keys = {}\n\n    @contextmanager\n    def track(self):\n        self._track = True\n        yield self._tracked_data\n\n        self._track = False\n        self._tracked_data = defaultdict(dict)\n\n    def _track_data(self, node):\n        if not self._track:\n            return\n\n        if node.meta and node.meta.local:\n            return\n\n        for source, keys in node.get_sources().items():\n            if not source:\n                continue\n            params_file = self._tracked_data[source]\n            keys = [keys] if isinstance(keys, str) else keys\n            params_file.update({key: node.value for key in keys})", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.load_from_Context.load_from.return.ctx": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.load_from_Context.load_from.return.ctx", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 348, "end_line": 379, "span_ids": ["Context.load_from"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    @classmethod\n    def load_from(cls, tree, path: PathInfo, select_keys=None) -> \"Context\":\n        file = relpath(path)\n        if not tree.exists(path):\n            raise ParamsLoadError(f\"'{file}' does not exist\")\n        if tree.isdir(path):\n            raise ParamsLoadError(f\"'{file}' is a directory\")\n\n        _, ext = os.path.splitext(file)\n        loader = LOADERS[ext]\n\n        data = loader(path, tree=tree)\n        if not isinstance(data, Mapping):\n            typ = type(data).__name__\n            raise ParamsLoadError(\n                f\"expected a dictionary, got '{typ}' in file '{file}'\"\n            )\n\n        select_keys = select_keys or []\n        if select_keys:\n            try:\n                data = {key: data[key] for key in select_keys}\n            except KeyError as exc:\n                key, *_ = exc.args\n                raise ParamsLoadError(\n                    f\"could not find '{key}' in '{file}'\"\n                ) from exc\n\n        meta = Meta(source=file, local=False)\n        ctx = cls(data, meta=meta)\n        ctx.imports[os.path.abspath(path)] = select_keys or None\n        return ctx", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.merge_update_Context.merge_from.if_abspath_not_in_self_im.elif_cp_.self_imports_abspath_ext": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.merge_update_Context.merge_from.if_abspath_not_in_self_im.elif_cp_.self_imports_abspath_ext", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 379, "end_line": 409, "span_ids": ["Context.merge_from", "Context.merge_update"], "tokens": 270}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def merge_update(self, other: \"Context\", overwrite=False):\n        matches = select(lambda key: key in other, self._reserved_keys.keys())\n        if matches:\n            raise ReservedKeyError(matches)\n        return super().merge_update(other, overwrite=overwrite)\n\n    def merge_from(\n        self, tree, item: str, wdir: PathInfo, overwrite=False,\n    ):\n        path, _, keys_str = item.partition(\":\")\n        select_keys = lfilter(bool, keys_str.split(\",\"))\n        path_info = wdir / path\n\n        abspath = os.path.abspath(path_info)\n        if abspath in self.imports:\n            if not select_keys and self.imports[abspath] is None:\n                return  # allow specifying complete filepath multiple times\n            self.check_loaded(abspath, item, select_keys)\n\n        ctx = Context.load_from(tree, path_info, select_keys)\n\n        try:\n            self.merge_update(ctx, overwrite=overwrite)\n        except ReservedKeyError as exc:\n            raise ReservedKeyError(exc.keys, item) from exc\n\n        cp = ctx.imports[abspath]\n        if abspath not in self.imports:\n            self.imports[abspath] = cp\n        elif cp:\n            self.imports[abspath].extend(cp)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.check_loaded_Context.check_loaded.if_not_keys_and_isinstanc.elif_keys_and_isinstance_.if_not_set_keys_isdisjoi.raise_VarsAlreadyLoaded_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.check_loaded_Context.check_loaded.if_not_keys_and_isinstanc.elif_keys_and_isinstance_.if_not_set_keys_isdisjoi.raise_VarsAlreadyLoaded_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 411, "end_line": 424, "span_ids": ["Context.check_loaded"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def check_loaded(self, path, item, keys):\n        if not keys and isinstance(self.imports[path], list):\n            raise VarsAlreadyLoaded(\n                f\"cannot load '{item}' as it's partially loaded already\"\n            )\n        elif keys and self.imports[path] is None:\n            raise VarsAlreadyLoaded(\n                f\"cannot partially load '{item}' as it's already loaded.\"\n            )\n        elif keys and isinstance(self.imports[path], list):\n            if not set(keys).isdisjoint(set(self.imports[path])):\n                raise VarsAlreadyLoaded(\n                    f\"cannot load '{item}' as it's partially loaded already\"\n                )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.load_from_vars_Context.load_from_vars.for_index_item_in_enumer.if_isinstance_item_str_.else_.self_merge_update_Context": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.load_from_vars_Context.load_from_vars.for_index_item_in_enumer.if_isinstance_item_str_.else_.self_merge_update_Context", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 426, "end_line": 450, "span_ids": ["Context.load_from_vars"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def load_from_vars(\n        self,\n        tree,\n        vars_: List,\n        wdir: PathInfo,\n        stage_name: str = None,\n        default: str = None,\n    ):\n        if default:\n            to_import = wdir / default\n            if tree.exists(to_import):\n                self.merge_from(tree, default, wdir)\n            else:\n                msg = \"%s does not exist, it won't be used in parametrization\"\n                logger.trace(msg, to_import)  # type: ignore[attr-defined]\n\n        stage_name = stage_name or \"\"\n        for index, item in enumerate(vars_):\n            assert isinstance(item, (str, dict))\n            if isinstance(item, str):\n                self.merge_from(tree, item, wdir)\n            else:\n                joiner = \".\" if stage_name else \"\"\n                meta = Meta(source=f\"{stage_name}{joiner}vars[{index}]\")\n                self.merge_update(Context(item, meta=meta))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.__deepcopy___Context.reserved.try_.finally_.for_key_in_new_keys_.self__reserved_keys_pop_k": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.__deepcopy___Context.reserved.try_.finally_.for_key_in_new_keys_.self__reserved_keys_pop_k", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 452, "end_line": 481, "span_ids": ["Context.reserved", "Context.__deepcopy__", "Context.clone"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def __deepcopy__(self, _):\n        new = Context(super().__deepcopy__(_))\n        new.meta = deepcopy(self.meta)\n        new.imports = deepcopy(self.imports)\n        new._reserved_keys = deepcopy(self._reserved_keys)\n        return new\n\n    @classmethod\n    def clone(cls, ctx: \"Context\") -> \"Context\":\n        \"\"\"Clones given context.\"\"\"\n        return deepcopy(ctx)\n\n    @contextmanager\n    def reserved(self, *keys: str):\n        \"\"\"Allow reserving some keys so that they cannot be overwritten.\n\n        Ideally, we should delegate this to a separate container\n        and support proper namespacing so that we could support `env` features.\n        But for now, just `item` and `key`, this should do.\n        \"\"\"\n        # using dict to make the error messages ordered\n        new = dict.fromkeys(\n            [key for key in keys if key not in self._reserved_keys]\n        )\n        self._reserved_keys.update(new)\n        try:\n            yield\n        finally:\n            for key in new.keys():\n                self._reserved_keys.pop(key)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.set_temporarily_Context.set_temporarily.try_.finally_.for_key_in_non_existing_.self_data_pop_key_None_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.set_temporarily_Context.set_temporarily.try_.finally_.for_key_in_non_existing_.self_data_pop_key_None_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 483, "end_line": 498, "span_ids": ["Context.set_temporarily"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    @contextmanager\n    def set_temporarily(self, to_set, reserve=False):\n        cm = self.reserved(*to_set) if reserve else nullcontext()\n\n        non_existing = frozenset(to_set.keys() - self.keys())\n        prev = {key: self[key] for key in to_set if key not in non_existing}\n        to_set = CtxDict(to_set)\n        self.update(to_set)\n\n        try:\n            with cm:\n                yield\n        finally:\n            self.update(prev)\n            for key in non_existing:\n                self.data.pop(key, None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.resolve_Context.resolve.return.func_src_unwrap_skip_in": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.resolve_Context.resolve.return.func_src_unwrap_skip_in", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 500, "end_line": 513, "span_ids": ["Context.resolve"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def resolve(self, src, unwrap=True, skip_interpolation_checks=False):\n        \"\"\"Recursively resolves interpolation and returns resolved data.\n\n        Args:\n            src: Data (str/list/dict etc.) to resolve\n            unwrap: Unwrap CtxDict/CtxList/Value to it's original data if\n                    inside `src`. Defaults to True.\n\n        >>> c = Context({\"three\": 3})\n        >>> c.resolve({\"lst\": [1, 2, \"${three}\"]})\n        {'lst': [1, 2, 3]}\n        \"\"\"\n        func = recurse(self.resolve_str)\n        return func(src, unwrap, skip_interpolation_checks)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.resolve_str_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_Context.resolve_str_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 515, "end_line": 545, "span_ids": ["Context.resolve_str", "impl:7"], "tokens": 221}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Context(CtxDict):\n\n    def resolve_str(\n        self, src: str, unwrap=True, skip_interpolation_checks=False\n    ):\n        \"\"\"Resolves interpolated string to it's original value,\n        or in case of multiple interpolations, a combined string.\n\n        >>> c = Context({\"enabled\": True})\n        >>> c.resolve_str(\"${enabled}\")\n        True\n        >>> c.resolve_str(\"enabled? ${enabled}\")\n        'enabled? true'\n        \"\"\"\n        matches = get_matches(src)\n        if is_exact_string(src, matches):\n            # replace \"${enabled}\", if `enabled` is a boolean, with it's actual\n            # value rather than it's string counterparts.\n            expr = get_expression(\n                matches[0], skip_checks=skip_interpolation_checks\n            )\n            return self.select(expr, unwrap=unwrap)\n        # but not \"${num} days\"\n        return str_interpolate(\n            src, matches, self, skip_checks=skip_interpolation_checks\n        )\n\n\nif __name__ == \"__main__\":\n    import doctest\n\n    doctest.testmod()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py_re__.return._true_if_obj_else_false": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py_re__.return._true_if_obj_else_false", "embedding": null, "metadata": {"file_path": "dvc/parsing/interpolate.py", "file_name": "interpolate.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 80, "span_ids": ["imports", "embrace", "format_and_raise_parse_error", "is_interpolated_string", "ParseError", "_", "to_str", "normalize_key", "get_matches"], "tokens": 429}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import re\nimport typing\nfrom collections.abc import Mapping\nfrom functools import singledispatch\n\nfrom funcy import rpartial\nfrom pyparsing import (\n    CharsNotIn,\n    ParseException,\n    ParserElement,\n    Suppress,\n    ZeroOrMore,\n)\n\nfrom dvc.exceptions import DvcException\nfrom dvc.utils import colorize\n\nif typing.TYPE_CHECKING:\n    from typing import List, Match\n\n    from .context import Context\n\nBRACE_OPEN = \"${\"\nBRACE_CLOSE = \"}\"\nLBRACK = \"[\"\nRBRACK = \"]\"\nPERIOD = \".\"\nKEYCRE = re.compile(\n    r\"\"\"\n    (?<!\\\\)                   # escape \\${} or ${{}}\n    \\$                        # starts with $\n    (?:({{)|({))              # either starts with double braces or single\n    (.*?)                     # match every char inside\n    (?(1)}})(?(2)})           # end with same kinds of braces it opened with\n\"\"\",\n    re.VERBOSE,\n)\n\nParserElement.enablePackrat()\n\n\nword = CharsNotIn(f\"{PERIOD}{LBRACK}{RBRACK}\")\nidx = Suppress(LBRACK) + word + Suppress(RBRACK)\nattr = Suppress(PERIOD) + word\nparser = word + ZeroOrMore(attr ^ idx)\nparser.setParseAction(PERIOD.join)\n\n\nclass ParseError(DvcException):\n    pass\n\n\ndef get_matches(template: str):\n    return list(KEYCRE.finditer(template))\n\n\ndef is_interpolated_string(val):\n    return isinstance(val, str) and bool(get_matches(val))\n\n\ndef normalize_key(key: str):\n    return key.replace(LBRACK, PERIOD).replace(RBRACK, \"\")\n\n\ndef format_and_raise_parse_error(exc):\n    raise ParseError(_format_exc_msg(exc))\n\n\ndef embrace(s: str):\n    return BRACE_OPEN + s + BRACE_CLOSE\n\n\n@singledispatch\ndef to_str(obj) -> str:\n    return str(obj)\n\n\n@to_str.register(bool)\ndef _(obj: bool):\n    return \"true\" if obj else \"false\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py__format_exc_msg__format_exc_msg.return._n_join_pstr_pointer_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py__format_exc_msg__format_exc_msg.return._n_join_pstr_pointer_", "embedding": null, "metadata": {"file_path": "dvc/parsing/interpolate.py", "file_name": "interpolate.py", "file_type": "text/x-python", "category": "implementation", "start_line": 83, "end_line": 98, "span_ids": ["_format_exc_msg"], "tokens": 175}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _format_exc_msg(exc: ParseException):\n    exc.loc += 2  # 2 because we append `${` at the start of expr below\n\n    expr = exc.pstr\n    exc.pstr = embrace(exc.pstr)\n    error = ParseException.explain(exc, depth=0)\n\n    _, pointer, *explains = error.splitlines()\n    pstr = \"{brace_open}{expr}{brace_close}\".format(\n        brace_open=colorize(BRACE_OPEN, color=\"blue\"),\n        expr=colorize(expr, color=\"magenta\"),\n        brace_close=colorize(BRACE_CLOSE, color=\"blue\"),\n    )\n    msg = \"\\n\".join(explains)\n    pointer = colorize(pointer, color=\"red\")\n    return \"\\n\".join([pstr, pointer, colorize(msg, color=\"red\", style=\"bold\")])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py_recurse_get_expression.return.inner_if_skip_checks_else": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/interpolate.py_recurse_get_expression.return.inner_if_skip_checks_else", "embedding": null, "metadata": {"file_path": "dvc/parsing/interpolate.py", "file_name": "interpolate.py", "file_type": "text/x-python", "category": "implementation", "start_line": 101, "end_line": 141, "span_ids": ["parse_expr", "check_expression", "get_expression", "check_recursive_parse_errors", "recurse"], "tokens": 234}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def recurse(f):\n    Seq = (list, tuple, set)\n\n    def wrapper(data, *args):\n        g = rpartial(wrapper, *args)\n        if isinstance(data, Mapping):\n            return {g(k): g(v) for k, v in data.items()}\n        elif isinstance(data, Seq):\n            return type(data)(map(g, data))\n        elif isinstance(data, str):\n            return f(data, *args)\n        return data\n\n    return wrapper\n\n\ndef check_recursive_parse_errors(data: dict):\n    func = recurse(check_expression)\n    return func(data)\n\n\ndef check_expression(s: str):\n    matches = get_matches(s)\n    for match in matches:\n        get_expression(match)\n\n\ndef parse_expr(s: str):\n    try:\n        result = parser.parseString(s, parseAll=True)\n    except ParseException as exc:\n        format_and_raise_parse_error(exc)\n\n    joined = result.asList()\n    assert len(joined) == 1\n    return joined[0]\n\n\ndef get_expression(match: \"Match\", skip_checks: bool = False):\n    _, _, inner = match.groups()\n    return inner if skip_checks else parse_expr(inner)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.outs_trie_Repo.stages.return.self_stage_collect_repo_o": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/__init__.py_Repo.outs_trie_Repo.stages.return.self_stage_collect_repo_o", "embedding": null, "metadata": {"file_path": "dvc/repo/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 352, "end_line": 380, "span_ids": ["Repo.graph", "Repo.outs_graph", "Repo.pipelines", "Repo.stages", "Repo.outs_trie"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Repo:\n\n    @cached_property\n    def outs_trie(self):\n        return build_outs_trie(self.stages)\n\n    @cached_property\n    def graph(self):\n        return build_graph(self.stages, self.outs_trie)\n\n    @cached_property\n    def outs_graph(self):\n        return build_outs_graph(self.graph, self.outs_trie)\n\n    @cached_property\n    def pipelines(self):\n        return get_pipelines(self.graph)\n\n    @cached_property\n    def stages(self):\n        \"\"\"\n        Walks down the root directory looking for Dvcfiles,\n        skipping the directories that are related with\n        any SCM (e.g. `.git`), DVC itself (`.dvc`), or directories\n        tracked by DVC (e.g. `dvc add data` would skip `data/`)\n\n        NOTE: For large repos, this could be an expensive\n              operation. Consider using some memoization.\n        \"\"\"\n        error_handler = self.stage_collection_error_handler\n        return self.stage.collect_repo(onerror=error_handler)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py_logging_logger.logging_getLogger___name_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py_logging_logger.logging_getLogger___name_", "embedding": null, "metadata": {"file_path": "dvc/repo/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 20, "span_ids": ["imports"], "tokens": 111}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nimport colorama\n\nfrom dvc.dvcfile import Dvcfile, is_dvc_file\n\nfrom ..exceptions import (\n    CacheLinkError,\n    OutputDuplicationError,\n    OverlappingOutputPathsError,\n    RecursiveAddingWhileUsingFilename,\n)\nfrom ..output.base import OutputDoesNotExistError\nfrom ..progress import Tqdm\nfrom ..repo.scm_context import scm_context\nfrom ..utils import LARGE_DIR_SIZE, glob_targets, resolve_paths\nfrom . import locked\n\nlogger = logging.getLogger(__name__)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py_add_add.return.stages_list": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/add.py_add_add.return.stages_list", "embedding": null, "metadata": {"file_path": "dvc/repo/add.py", "file_name": "add.py", "file_type": "text/x-python", "category": "implementation", "start_line": 23, "end_line": 103, "span_ids": ["add"], "tokens": 622}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\n@scm_context\ndef add(\n    repo, targets, recursive=False, no_commit=False, fname=None, **kwargs,\n):\n    if recursive and fname:\n        raise RecursiveAddingWhileUsingFilename()\n\n    if isinstance(targets, str):\n        targets = [targets]\n\n    link_failures = []\n    stages_list = []\n    num_targets = len(targets)\n    with Tqdm(total=num_targets, desc=\"Add\", unit=\"file\", leave=True) as pbar:\n        if num_targets == 1:\n            # clear unneeded top-level progress bar for single target\n            pbar.bar_format = \"Adding...\"\n            pbar.refresh()\n        for target in targets:\n            sub_targets = _find_all_targets(repo, target, recursive)\n            pbar.total += len(sub_targets) - 1\n\n            if os.path.isdir(target) and len(sub_targets) > LARGE_DIR_SIZE:\n                logger.warning(\n                    \"You are adding a large directory '{target}' recursively,\"\n                    \" consider tracking it as a whole instead.\\n\"\n                    \"{purple}HINT:{nc} Remove the generated DVC-file and then\"\n                    \" run `{cyan}dvc add {target}{nc}`\".format(\n                        purple=colorama.Fore.MAGENTA,\n                        cyan=colorama.Fore.CYAN,\n                        nc=colorama.Style.RESET_ALL,\n                        target=target,\n                    )\n                )\n\n            stages = _create_stages(\n                repo, sub_targets, fname, pbar=pbar, **kwargs,\n            )\n\n            try:\n                repo.check_modified_graph(stages)\n            except OverlappingOutputPathsError as exc:\n                msg = (\n                    \"Cannot add '{out}', because it is overlapping with other \"\n                    \"DVC tracked output: '{parent}'.\\n\"\n                    \"To include '{out}' in '{parent}', run \"\n                    \"'dvc commit {parent_stage}'\"\n                ).format(\n                    out=exc.overlapping_out.path_info,\n                    parent=exc.parent.path_info,\n                    parent_stage=exc.parent.stage.addressing,\n                )\n                raise OverlappingOutputPathsError(\n                    exc.parent, exc.overlapping_out, msg\n                )\n            except OutputDuplicationError as exc:\n                raise OutputDuplicationError(\n                    exc.output, set(exc.stages) - set(stages)\n                )\n\n            link_failures.extend(\n                _process_stages(repo, stages, no_commit, pbar)\n            )\n            stages_list += stages\n\n        if num_targets == 1:  # restore bar format for stats\n            pbar.bar_format = pbar.BAR_FMT_DEFAULT\n\n    if link_failures:\n        msg = (\n            \"Some targets could not be linked from cache to workspace.\\n{}\\n\"\n            \"To re-link these targets, reconfigure cache types and then run:\\n\"\n            \"\\n\\tdvc checkout {}\"\n        ).format(\n            CacheLinkError.SUPPORT_LINK,\n            \" \".join([str(stage.relpath) for stage in link_failures]),\n        )\n        logger.warning(msg)\n\n    return stages_list", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_logging_unlocked_repo.return.wrapper": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_logging_unlocked_repo.return.wrapper", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 66, "span_ids": ["imports", "scm_locked", "unlocked_repo"], "tokens": 377}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport re\nimport signal\nfrom collections import defaultdict, namedtuple\nfrom concurrent.futures import CancelledError, ProcessPoolExecutor, wait\nfrom contextlib import contextmanager\nfrom functools import wraps\nfrom multiprocessing import Manager\nfrom typing import Dict, Iterable, Mapping, Optional\n\nfrom funcy import cached_property, first\n\nfrom dvc.dvcfile import is_lock_file\nfrom dvc.exceptions import DvcException\nfrom dvc.path_info import PathInfo\nfrom dvc.stage.run import CheckpointKilledError\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import makedirs\n\nfrom .base import (\n    EXEC_APPLY,\n    EXEC_BASELINE,\n    EXEC_BRANCH,\n    EXEC_CHECKPOINT,\n    EXEC_HEAD,\n    EXEC_MERGE,\n    EXEC_NAMESPACE,\n    EXPS_NAMESPACE,\n    EXPS_STASH,\n    BaselineMismatchError,\n    CheckpointExistsError,\n    ExperimentExistsError,\n    ExpRefInfo,\n    MultipleBranchError,\n)\nfrom .utils import exp_refs_by_rev\n\nlogger = logging.getLogger(__name__)\n\n\ndef scm_locked(f):\n    # Lock the experiments workspace so that we don't try to perform two\n    # different sequences of git operations at once\n    @wraps(f)\n    def wrapper(exp, *args, **kwargs):\n        with exp.scm_lock:\n            return f(exp, *args, **kwargs)\n\n    return wrapper\n\n\ndef unlocked_repo(f):\n    @wraps(f)\n    def wrapper(exp, *args, **kwargs):\n        exp.repo.state.dump()\n        exp.repo.lock.unlock()\n        exp.repo._reset()  # pylint: disable=protected-access\n        try:\n            ret = f(exp, *args, **kwargs)\n        finally:\n            exp.repo.lock.lock()\n            exp.repo.state.load()\n        return ret\n\n    return wrapper", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments_Experiments.stash.return.Stash_self_scm_EXPS_STAS": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments_Experiments.stash.return.Stash_self_scm_EXPS_STAS", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 69, "end_line": 129, "span_ids": ["Experiments.scm", "Experiments.args_file", "Experiments.__init__", "Experiments.stash", "Experiments.chdir", "Experiments.dvc_dir", "Experiments"], "tokens": 465}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n    \"\"\"Class that manages experiments in a DVC repo.\n\n    Args:\n        repo (dvc.repo.Repo): repo instance that these experiments belong to.\n    \"\"\"\n\n    STASH_EXPERIMENT_FORMAT = \"dvc-exp:{rev}:{baseline_rev}:{name}\"\n    STASH_EXPERIMENT_RE = re.compile(\n        r\"(?:commit: )\"\n        r\"dvc-exp:(?P<rev>[0-9a-f]+):(?P<baseline_rev>[0-9a-f]+)\"\n        r\":(?P<name>[^~^:\\\\?\\[\\]*]*)\"\n        r\"(:(?P<branch>.+))?$\"\n    )\n    BRANCH_RE = re.compile(\n        r\"^(?P<baseline_rev>[a-f0-9]{7})-(?P<exp_sha>[a-f0-9]+)\"\n        r\"(?P<checkpoint>-checkpoint)?$\"\n    )\n    LAST_CHECKPOINT = \":last\"\n    EXEC_TMP_DIR = \"exps\"\n\n    StashEntry = namedtuple(\n        \"StashEntry\", [\"index\", \"rev\", \"baseline_rev\", \"branch\", \"name\"]\n    )\n\n    def __init__(self, repo):\n        from dvc.lock import make_lock\n        from dvc.scm.base import NoSCMError\n\n        if repo.config[\"core\"].get(\"no_scm\", False):\n            raise NoSCMError\n\n        self.repo = repo\n        self.scm_lock = make_lock(\n            os.path.join(self.repo.tmp_dir, \"exp_scm_lock\"),\n            tmp_dir=self.repo.tmp_dir,\n        )\n\n    @property\n    def scm(self):\n        return self.repo.scm\n\n    @cached_property\n    def dvc_dir(self):\n        return relpath(self.repo.dvc_dir, self.repo.scm.root_dir)\n\n    @contextmanager\n    def chdir(self):\n        yield\n\n    @cached_property\n    def args_file(self):\n        from .executor.base import BaseExecutor\n\n        return os.path.join(self.repo.tmp_dir, BaseExecutor.PACKED_ARGS_FILE)\n\n    @cached_property\n    def stash(self):\n        from dvc.scm.git import Stash\n\n        return Stash(self.scm, EXPS_STASH)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.stash_revs_Experiments.stash_revs.return.revs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.stash_revs_Experiments.stash_revs.return.revs", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 131, "end_line": 145, "span_ids": ["Experiments.stash_revs"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    @property\n    def stash_revs(self):\n        revs = {}\n        for i, entry in enumerate(self.stash):\n            msg = entry.message.decode(\"utf-8\").strip()\n            m = self.STASH_EXPERIMENT_RE.match(msg)\n            if m:\n                revs[entry.new_sha.decode(\"utf-8\")] = self.StashEntry(\n                    i,\n                    m.group(\"rev\"),\n                    m.group(\"baseline_rev\"),\n                    m.group(\"branch\"),\n                    m.group(\"name\"),\n                )\n        return revs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._stash_exp_Experiments._stash_exp.return.stash_rev": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._stash_exp_Experiments._stash_exp.return.stash_rev", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 147, "end_line": 246, "span_ids": ["Experiments._stash_exp"], "tokens": 642}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _stash_exp(\n        self,\n        *args,\n        params: Optional[dict] = None,\n        resume_rev: Optional[str] = None,\n        baseline_rev: Optional[str] = None,\n        branch: Optional[str] = None,\n        name: Optional[str] = None,\n        **kwargs,\n    ):\n        \"\"\"Stash changes from the workspace as an experiment.\n\n        Args:\n            params: Optional dictionary of parameter values to be used.\n                Values take priority over any parameters specified in the\n                user's workspace.\n            resume_rev: Optional checkpoint resume rev.\n            baseline_rev: Optional baseline rev for this experiment, defaults\n                to the current SCM rev.\n            branch: Optional experiment branch name. If specified, the\n                experiment will be added to `branch` instead of creating\n                a new branch.\n            name: Optional experiment name. If specified this will be used as\n                the human-readable name in the experiment branch ref. Has no\n                effect of branch is specified.\n        \"\"\"\n        with self.scm.detach_head() as orig_head:\n            stash_head = orig_head\n            if baseline_rev is None:\n                baseline_rev = orig_head\n\n            with self.scm.stash_workspace() as workspace:\n                try:\n                    if workspace:\n                        self.stash.apply(workspace)\n\n                    if resume_rev:\n                        # move HEAD to the resume rev so that the stashed diff\n                        # only contains changes relative to resume rev\n                        stash_head = resume_rev\n                        self.scm.set_ref(\n                            \"HEAD\",\n                            resume_rev,\n                            message=f\"dvc: resume from HEAD {resume_rev[:7]}\",\n                        )\n                        self.scm.reset()\n\n                    self._prune_lockfiles()\n\n                    # update experiment params from command line\n                    if params:\n                        self._update_params(params)\n\n                    if resume_rev:\n                        if self.scm.is_dirty():\n                            logger.debug(\n                                \"Resume new checkpoint branch with \"\n                                \"modifications\"\n                            )\n                            branch = None\n                        else:\n                            logger.debug(\n                                \"Resuming from tip of existing branch '%s'\",\n                                branch,\n                            )\n                            if name:\n                                logger.warning(\n                                    \"Ignoring option '--name %s' for resumed \"\n                                    \"experiment. Existing experiment name will\"\n                                    \"be preserved instead.\"\n                                )\n\n                    # save additional repro command line arguments\n                    self._pack_args(*args, **kwargs)\n\n                    # save experiment as a stash commit\n                    msg = self._stash_msg(\n                        stash_head,\n                        baseline_rev=baseline_rev,\n                        branch=branch,\n                        name=name,\n                    )\n                    stash_rev = self.stash.push(message=msg)\n                    logger.debug(\n                        (\n                            \"Stashed experiment '%s' with baseline '%s' \"\n                            \"for future execution.\"\n                        ),\n                        stash_rev[:7],\n                        baseline_rev[:7],\n                    )\n                finally:\n                    # Reset any of our changes before prior unstashing\n                    if resume_rev:\n                        self.scm.set_ref(\n                            \"HEAD\", orig_head, message=\"dvc: restore HEAD\"\n                        )\n                    self.scm.reset(hard=True)\n\n        return stash_rev", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._prune_lockfiles_Experiments._stash_msg.return.msg": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._prune_lockfiles_Experiments._stash_msg.return.msg", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 248, "end_line": 275, "span_ids": ["Experiments._prune_lockfiles", "Experiments._stash_msg"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _prune_lockfiles(self):\n        # NOTE: dirty DVC lock files must be restored to index state to\n        # avoid checking out incorrect persist or checkpoint outs\n        tree = self.scm.get_tree(\"HEAD\")\n        lock_files = [\n            str(fname)\n            for fname in tree.walk_files(self.scm.root_dir)\n            if is_lock_file(fname)\n        ]\n        if lock_files:\n            self.scm.reset(paths=lock_files)\n            self.scm.checkout_paths(lock_files, force=True)\n\n    def _stash_msg(\n        self,\n        rev: str,\n        baseline_rev: str,\n        branch: Optional[str] = None,\n        name: Optional[str] = None,\n    ):\n        if not baseline_rev:\n            baseline_rev = rev\n        msg = self.STASH_EXPERIMENT_FORMAT.format(\n            rev=rev, baseline_rev=baseline_rev, name=name if name else \"\"\n        )\n        if branch:\n            return f\"{msg}:{branch}\"\n        return msg", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._pack_args_Experiments._pack_args.self_scm_add_self_args_fi": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._pack_args_Experiments._pack_args.self_scm_add_self_args_fi", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 277, "end_line": 306, "span_ids": ["Experiments._pack_args"], "tokens": 232}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _pack_args(self, *args, **kwargs):\n        import pickle\n\n        from .executor.base import BaseExecutor\n\n        if os.path.exists(self.args_file) and self.scm.is_tracked(\n            self.args_file\n        ):\n            logger.warning(\n                (\n                    \"Temporary DVC file '.dvc/tmp/%s' exists and was \"\n                    \"likely committed to Git by mistake. It should be removed \"\n                    \"with:\\n\"\n                    \"\\tgit rm .dvc/tmp/%s\"\n                ),\n                BaseExecutor.PACKED_ARGS_FILE,\n                BaseExecutor.PACKED_ARGS_FILE,\n            )\n            with open(self.args_file, \"rb\") as fobj:\n                try:\n                    data = pickle.load(fobj)\n                except Exception:  # pylint: disable=broad-except\n                    data = {}\n            extra = int(data.get(\"extra\", 0)) + 1\n        else:\n            extra = None\n        BaseExecutor.pack_repro_args(\n            self.args_file, *args, extra=extra, **kwargs\n        )\n        self.scm.add(self.args_file)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._reproduce_revs_Experiments._reproduce_revs.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._reproduce_revs_Experiments._reproduce_revs.return.result", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 454, "end_line": 520, "span_ids": ["Experiments._reproduce_revs"], "tokens": 476}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    @scm_locked\n    def _reproduce_revs(\n        self,\n        revs: Optional[Iterable] = None,\n        keep_stash: Optional[bool] = True,\n        **kwargs,\n    ) -> Mapping[str, str]:\n        \"\"\"Reproduce the specified experiments.\n\n        Args:\n            revs: If revs is not specified, all stashed experiments will be\n                reproduced.\n            keep_stash: If True, stashed experiments will be preserved if they\n                fail to reproduce successfully.\n\n        Returns:\n            dict mapping successfully reproduced experiment revs to their\n            hashes.\n        \"\"\"\n        stash_revs = self.stash_revs\n\n        # to_run contains mapping of:\n        #   input_rev: (stash_index, rev, baseline_rev)\n        # where input_rev contains the changes to execute (usually a stash\n        # commit), rev is the original SCM commit to be checked out, and\n        # baseline_rev is the experiment baseline.\n        if revs is None:\n            to_run = dict(stash_revs)\n        else:\n            to_run = {\n                rev: stash_revs[rev]\n                if rev in stash_revs\n                else self.StashEntry(None, rev, rev, None, None)\n                for rev in revs\n            }\n\n        logger.debug(\n            \"Reproducing experiment revs '%s'\",\n            \", \".join((rev[:7] for rev in to_run)),\n        )\n\n        executors = self._init_executors(to_run)\n        exec_results = self._executors_repro(executors, **kwargs)\n\n        if keep_stash:\n            # only drop successfully run stashed experiments\n            to_drop = sorted(\n                (\n                    stash_revs[rev][0]\n                    for rev in exec_results\n                    if rev in stash_revs\n                ),\n                reverse=True,\n            )\n        else:\n            # drop all stashed experiments\n            to_drop = sorted(\n                (stash_revs[rev][0] for rev in to_run if rev in stash_revs),\n                reverse=True,\n            )\n        for index in to_drop:\n            self.stash.drop(index)\n\n        result: Dict[str, str] = {}\n        for _, exp_result in exec_results.items():\n            result.update(exp_result)\n        return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._init_executors_Experiments._init_executors.return.executors": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._init_executors_Experiments._init_executors.return.executors", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 522, "end_line": 553, "span_ids": ["Experiments._init_executors"], "tokens": 276}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _init_executors(self, to_run):\n        from .executor.local import TempDirExecutor\n\n        executors = {}\n        base_tmp_dir = os.path.join(self.repo.tmp_dir, self.EXEC_TMP_DIR)\n        if not os.path.exists(base_tmp_dir):\n            makedirs(base_tmp_dir)\n        for stash_rev, item in to_run.items():\n            self.scm.set_ref(EXEC_HEAD, item.rev)\n            self.scm.set_ref(EXEC_MERGE, stash_rev)\n            self.scm.set_ref(EXEC_BASELINE, item.baseline_rev)\n\n            # Executor will be initialized with an empty git repo that\n            # we populate by pushing:\n            #   EXEC_HEAD - the base commit for this experiment\n            #   EXEC_MERGE - the unmerged changes (from our stash)\n            #       to be reproduced\n            #   EXEC_BASELINE - the baseline commit for this experiment\n            executor = TempDirExecutor(\n                self.scm,\n                self.dvc_dir,\n                name=item.name,\n                branch=item.branch,\n                tmp_dir=base_tmp_dir,\n                cache_dir=self.repo.cache.local.cache_dir,\n            )\n            executors[stash_rev] = executor\n\n        for ref in (EXEC_HEAD, EXEC_MERGE, EXEC_BASELINE):\n            self.scm.remove_ref(ref)\n\n        return executors", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._executors_repro_Experiments._executors_repro.return.result": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._executors_repro_Experiments._executors_repro.return.result", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 555, "end_line": 626, "span_ids": ["Experiments._executors_repro"], "tokens": 466}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _executors_repro(\n        self, executors: dict, jobs: Optional[int] = 1\n    ) -> Mapping[str, Mapping[str, str]]:\n        \"\"\"Run dvc repro for the specified BaseExecutors in parallel.\n\n        Returns:\n            dict mapping stash revs to the successfully executed experiments\n            for each stash rev.\n        \"\"\"\n        result: Dict[str, Dict[str, str]] = defaultdict(dict)\n\n        manager = Manager()\n        pid_q = manager.Queue()\n\n        rel_cwd = relpath(os.getcwd(), self.repo.root_dir)\n        with ProcessPoolExecutor(max_workers=jobs) as workers:\n            futures = {}\n            for rev, executor in executors.items():\n                future = workers.submit(\n                    executor.reproduce,\n                    executor.dvc_dir,\n                    rev,\n                    queue=pid_q,\n                    name=executor.name,\n                    rel_cwd=rel_cwd,\n                    log_level=logger.getEffectiveLevel(),\n                )\n                futures[future] = (rev, executor)\n\n            try:\n                wait(futures)\n            except KeyboardInterrupt:\n                # forward SIGINT to any running executor processes and\n                # cancel any remaining futures\n                pids = {}\n                while not pid_q.empty():\n                    rev, pid = pid_q.get()\n                    pids[rev] = pid\n                for future, (rev, _) in futures.items():\n                    if future.running():\n                        os.kill(pids[rev], signal.SIGINT)\n                    elif not future.done():\n                        future.cancel()\n\n            for future, (rev, executor) in futures.items():\n                rev, executor = futures[future]\n                exc = future.exception()\n\n                try:\n                    if exc is None:\n                        exec_result = future.result()\n                        result[rev].update(\n                            self._collect_executor(executor, exec_result)\n                        )\n                    else:\n                        # Checkpoint errors have already been logged\n                        if not isinstance(exc, CheckpointKilledError):\n                            logger.exception(\n                                \"Failed to reproduce experiment '%s'\",\n                                rev[:7],\n                                exc_info=exc,\n                            )\n                except CancelledError:\n                    logger.error(\n                        \"Cancelled before attempting to reproduce experiment \"\n                        \"'%s'\",\n                        rev[:7],\n                    )\n                finally:\n                    executor.cleanup()\n\n        return result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._collect_executor_Experiments._collect_executor.return.results": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._collect_executor_Experiments._collect_executor.return.results", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 628, "end_line": 652, "span_ids": ["Experiments._collect_executor"], "tokens": 222}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def _collect_executor(self, executor, exec_result) -> Mapping[str, str]:\n        # NOTE: GitPython Repo instances cannot be re-used\n        # after process has received SIGINT or SIGTERM, so we\n        # need this hack to re-instantiate git instances after\n        # checkpoint runs. See:\n        # https://github.com/gitpython-developers/GitPython/issues/427\n        del self.repo.scm\n\n        results = {}\n\n        def on_diverged(ref: str, checkpoint: bool):\n            ref_info = ExpRefInfo.from_ref(ref)\n            if checkpoint:\n                raise CheckpointExistsError(ref_info.name)\n            raise ExperimentExistsError(ref_info.name)\n\n        for ref in executor.fetch_exps(\n            self.scm, force=exec_result.force, on_diverged=on_diverged,\n        ):\n            exp_rev = self.scm.get_ref(ref)\n            if exp_rev:\n                logger.debug(\"Collected experiment '%s'.\", exp_rev[:7])\n                results[exp_rev] = exec_result.exp_hash\n\n        return results", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._workspace_repro_Experiments._workspace_repro.with_self_scm_detach_head.try_.finally_.if_entry_branch_.self_scm_remove_ref_EXEC_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments._workspace_repro_Experiments._workspace_repro.with_self_scm_detach_head.try_.finally_.if_entry_branch_.self_scm_remove_ref_EXEC_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 654, "end_line": 701, "span_ids": ["Experiments._workspace_repro"], "tokens": 420}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    @unlocked_repo\n    def _workspace_repro(self) -> Mapping[str, str]:\n        \"\"\"Run the most recently stashed experiment in the workspace.\"\"\"\n        from .executor.base import BaseExecutor\n\n        entry = first(self.stash_revs.values())\n        assert entry.index == 0\n\n        # NOTE: the stash commit to be popped already contains all the current\n        # workspace changes plus CLI modifed --params changes.\n        # `reset --hard` here will not lose any data (pop without reset would\n        # result in conflict between workspace params and stashed CLI params).\n        self.scm.reset(hard=True)\n        with self.scm.detach_head(entry.rev):\n            rev = self.stash.pop()\n            self.scm.set_ref(EXEC_BASELINE, entry.baseline_rev)\n            if entry.branch:\n                self.scm.set_ref(EXEC_BRANCH, entry.branch, symbolic=True)\n            elif self.scm.get_ref(EXEC_BRANCH):\n                self.scm.remove_ref(EXEC_BRANCH)\n            try:\n                exec_result = BaseExecutor.reproduce(\n                    None,\n                    rev,\n                    name=entry.name,\n                    rel_cwd=relpath(os.getcwd(), self.scm.root_dir),\n                )\n\n                if not exec_result.exp_hash or not exec_result.ref_info:\n                    raise DvcException(\n                        f\"Failed to reproduce experiment '{rev[:7]}'\"\n                    )\n                exp_rev = self.scm.get_ref(str(exec_result.ref_info))\n                self.scm.set_ref(EXEC_APPLY, exp_rev)\n                return {exp_rev: exec_result.exp_hash}\n            except CheckpointKilledError:\n                # Checkpoint errors have already been logged\n                return {}\n            except DvcException:\n                raise\n            except Exception as exc:\n                raise DvcException(\n                    f\"Failed to reproduce experiment '{rev[:7]}'\"\n                ) from exc\n            finally:\n                self.scm.remove_ref(EXEC_BASELINE)\n                if entry.branch:\n                    self.scm.remove_ref(EXEC_BRANCH)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.check_baseline_Experiments.check_baseline.raise_BaselineMismatchErr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.check_baseline_Experiments.check_baseline.raise_BaselineMismatchErr", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 703, "end_line": 716, "span_ids": ["Experiments.check_baseline"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def check_baseline(self, exp_rev):\n        baseline_sha = self.repo.scm.get_rev()\n        if exp_rev == baseline_sha:\n            return exp_rev\n\n        exp_baseline = self._get_baseline(exp_rev)\n        if exp_baseline is None:\n            # if we can't tell from branch name, fall back to parent commit\n            exp_commit = self.scm.resolve_commit(exp_rev)\n            if exp_commit:\n                exp_baseline = first(exp_commit.parents).hexsha\n        if exp_baseline == baseline_sha:\n            return exp_baseline\n        raise BaselineMismatchError(exp_baseline, baseline_sha)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.get_baseline_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.get_baseline_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 718, "end_line": 803, "span_ids": ["Experiments.run", "Experiments.ls", "Experiments.diff", "Experiments.push", "Experiments.get_baseline", "Experiments.get_branch_by_rev", "Experiments.apply", "Experiments.pull", "Experiments.get_exact_name", "Experiments.gc", "Experiments._get_baseline", "Experiments.show", "Experiments.branch"], "tokens": 615}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    @scm_locked\n    def get_baseline(self, rev):\n        \"\"\"Return the baseline rev for an experiment rev.\"\"\"\n        return self._get_baseline(rev)\n\n    def _get_baseline(self, rev):\n        rev = self.scm.resolve_rev(rev)\n\n        if rev in self.stash_revs:\n            entry = self.stash_revs.get(rev)\n            if entry:\n                return entry.baseline_rev\n            return None\n\n        ref_info = first(exp_refs_by_rev(self.scm, rev))\n        if ref_info:\n            return ref_info.baseline_sha\n        return None\n\n    def get_branch_by_rev(\n        self, rev: str, allow_multiple: bool = False\n    ) -> Optional[str]:\n        \"\"\"Returns full refname for the experiment branch containing rev.\"\"\"\n        ref_infos = list(exp_refs_by_rev(self.scm, rev))\n        if not ref_infos:\n            return None\n        if len(ref_infos) > 1 and not allow_multiple:\n            raise MultipleBranchError(rev)\n        return str(ref_infos[0])\n\n    def get_exact_name(self, rev: str):\n        \"\"\"Returns preferred name for the specified revision.\n\n        Prefers tags, branches (heads), experiments in that orer.\n        \"\"\"\n        exclude = f\"{EXEC_NAMESPACE}/*\"\n        ref = self.scm.describe(rev, base=EXPS_NAMESPACE, exclude=exclude)\n        if ref:\n            return ExpRefInfo.from_ref(ref).name\n        return None\n\n    def apply(self, *args, **kwargs):\n        from dvc.repo.experiments.apply import apply\n\n        return apply(self.repo, *args, **kwargs)\n\n    def branch(self, *args, **kwargs):\n        from dvc.repo.experiments.branch import branch\n\n        return branch(self.repo, *args, **kwargs)\n\n    def diff(self, *args, **kwargs):\n        from dvc.repo.experiments.diff import diff\n\n        return diff(self.repo, *args, **kwargs)\n\n    def show(self, *args, **kwargs):\n        from dvc.repo.experiments.show import show\n\n        return show(self.repo, *args, **kwargs)\n\n    def run(self, *args, **kwargs):\n        from dvc.repo.experiments.run import run\n\n        return run(self.repo, *args, **kwargs)\n\n    def gc(self, *args, **kwargs):\n        from dvc.repo.experiments.gc import gc\n\n        return gc(self.repo, *args, **kwargs)\n\n    def push(self, *args, **kwargs):\n        from dvc.repo.experiments.push import push\n\n        return push(self.repo, *args, **kwargs)\n\n    def pull(self, *args, **kwargs):\n        from dvc.repo.experiments.pull import pull\n\n        return pull(self.repo, *args, **kwargs)\n\n    def ls(self, *args, **kwargs):\n        from dvc.repo.experiments.ls import ls\n\n        return ls(self.repo, *args, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/apply.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/apply.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/apply.py", "file_name": "apply.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 78, "span_ids": ["apply", "imports"], "tokens": 526}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\n\nfrom dvc.repo import locked\nfrom dvc.repo.scm_context import scm_context\nfrom dvc.scm.base import RevError\nfrom dvc.utils.fs import remove\n\nfrom .base import (\n    EXEC_APPLY,\n    ApplyConflictError,\n    BaselineMismatchError,\n    InvalidExpRevError,\n)\nfrom .executor.base import BaseExecutor\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\n@scm_context\ndef apply(repo, rev, force=False, **kwargs):\n    from git.exc import GitCommandError\n\n    from dvc.repo.checkout import checkout as dvc_checkout\n\n    exps = repo.experiments\n\n    try:\n        exp_rev = repo.scm.resolve_rev(rev)\n        exps.check_baseline(exp_rev)\n    except (RevError, BaselineMismatchError) as exc:\n        raise InvalidExpRevError(rev) from exc\n\n    stash_rev = exp_rev in exps.stash_revs\n    if not stash_rev and not exps.get_branch_by_rev(exp_rev):\n        raise InvalidExpRevError(exp_rev)\n\n    # Note that we don't use stash_workspace() here since we need finer control\n    # over the merge behavior when we unstash everything\n    if repo.scm.is_dirty(untracked_files=True):\n        logger.debug(\"Stashing workspace\")\n        workspace = repo.scm.stash.push(include_untracked=True)\n    else:\n        workspace = None\n\n    repo.scm.gitpython.repo.git.merge(exp_rev, squash=True, no_commit=True)\n\n    if workspace:\n        try:\n            repo.scm.stash.apply(workspace)\n        except GitCommandError:\n            # Applied experiment conflicts with user's workspace changes\n            if force:\n                # prefer applied experiment changes over prior stashed changes\n                repo.scm.gitpython.repo.git.checkout(\"--ours\", \"--\", \".\")\n            else:\n                # revert applied changes and restore user's workspace\n                repo.scm.reset(hard=True)\n                repo.scm.stash.pop()\n                raise ApplyConflictError(rev)\n        repo.scm.stash.drop()\n    repo.scm.gitpython.repo.git.reset()\n\n    if stash_rev:\n        args_path = os.path.join(repo.tmp_dir, BaseExecutor.PACKED_ARGS_FILE)\n        if os.path.exists(args_path):\n            remove(args_path)\n\n    dvc_checkout(repo, **kwargs)\n\n    repo.scm.set_ref(EXEC_APPLY, exp_rev)\n    logger.info(\n        \"Changes for experiment '%s' have been applied to your current \"\n        \"workspace.\",\n        rev,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_from_typing_import_Option_BaselineMismatchError.__init__.self.expected_rev.expected": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_from_typing_import_Option_BaselineMismatchError.__init__.self.expected_rev.expected", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 33, "span_ids": ["BaselineMismatchError.__init__", "imports", "BaselineMismatchError", "UnchangedExperimentError.__init__", "UnchangedExperimentError"], "tokens": 285}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from typing import Optional\n\nfrom dvc.exceptions import DvcException, InvalidArgumentError\n\n# Experiment refs are stored according baseline git SHA:\n#   refs/exps/01/234abcd.../<exp_name>\nEXPS_NAMESPACE = \"refs/exps\"\nEXPS_STASH = f\"{EXPS_NAMESPACE}/stash\"\nEXEC_NAMESPACE = f\"{EXPS_NAMESPACE}/exec\"\nEXEC_APPLY = f\"{EXEC_NAMESPACE}/EXEC_APPLY\"\nEXEC_CHECKPOINT = f\"{EXEC_NAMESPACE}/EXEC_CHECKPOINT\"\nEXEC_BRANCH = f\"{EXEC_NAMESPACE}/EXEC_BRANCH\"\nEXEC_BASELINE = f\"{EXEC_NAMESPACE}/EXEC_BASELINE\"\nEXEC_HEAD = f\"{EXEC_NAMESPACE}/EXEC_HEAD\"\nEXEC_MERGE = f\"{EXEC_NAMESPACE}/EXEC_MERGE\"\n\n\nclass UnchangedExperimentError(DvcException):\n    def __init__(self, rev):\n        super().__init__(f\"Experiment unchanged from '{rev[:7]}'.\")\n        self.rev = rev\n\n\nclass BaselineMismatchError(DvcException):\n    def __init__(self, rev, expected):\n        if hasattr(rev, \"hexsha\"):\n            rev = rev.hexsha\n        rev_str = f\"{rev[:7]}\" if rev is not None else \"invalid commit\"\n        super().__init__(\n            f\"Experiment derived from '{rev_str}', expected '{expected[:7]}'.\"\n        )\n        self.rev = rev\n        self.expected_rev = expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_ExperimentExistsError_ExperimentExistsError.__init__.self.name.name": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_ExperimentExistsError_ExperimentExistsError.__init__.self.name.name", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 36, "end_line": 46, "span_ids": ["ExperimentExistsError.__init__", "ExperimentExistsError"], "tokens": 107}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExperimentExistsError(DvcException):\n    def __init__(self, name: str):\n        msg = (\n            \"Reproduced experiment conflicts with existing experiment \"\n            f\"'{name}'. To overwrite the existing experiment run:\\n\\n\"\n            \"\\tdvc exp run -f ...\\n\\n\"\n            \"To run this experiment with a different name run:\\n\\n\"\n            f\"\\tdvc exp run -n <new_name> ...\\n\"\n        )\n        super().__init__(msg)\n        self.name = name", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_CheckpointExistsError_CheckpointExistsError.__init__.self.name.name": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_CheckpointExistsError_CheckpointExistsError.__init__.self.name.name", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 49, "end_line": 60, "span_ids": ["CheckpointExistsError", "CheckpointExistsError.__init__"], "tokens": 110}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CheckpointExistsError(DvcException):\n    def __init__(self, name: str):\n        msg = (\n            \"Reproduced checkpoint experiment conflicts with existing \"\n            f\"experiment '{name}'. To restart (and overwrite) the existing \"\n            \"experiment run:\\n\\n\"\n            \"\\tdvc exp run -f ...\\n\\n\"\n            \"To resume the existing experiment, run:\\n\\n\"\n            f\"\\tdvc exp resume {name}\\n\"\n        )\n        super().__init__(msg)\n        self.name = name", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_InvalidExpRefError_ApplyConflictError.__init__.self.name.name": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_InvalidExpRefError_ApplyConflictError.__init__.self.name.name", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 63, "end_line": 94, "span_ids": ["InvalidExpRevError", "InvalidExpRevError.__init__", "MultipleBranchError.__init__", "InvalidExpRefError.__init__", "InvalidExpRefError", "ApplyConflictError.__init__", "MultipleBranchError", "ApplyConflictError"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class InvalidExpRefError(DvcException):\n    def __init__(self, ref):\n        super().__init__(f\"'{ref}' is not a valid experiment refname.\")\n        self.ref = ref\n\n\nclass InvalidExpRevError(InvalidArgumentError):\n    def __init__(self, rev):\n        super().__init__(\n            f\"'{rev}' does not appear to be an experiment commit.\"\n        )\n\n\nclass MultipleBranchError(DvcException):\n    def __init__(self, rev):\n        super().__init__(\n            f\"Ambiguous commit '{rev[:7]}' belongs to multiple experiment \"\n            \"branches.\"\n        )\n        self.rev = rev\n\n\nclass ApplyConflictError(InvalidArgumentError):\n    def __init__(self, name):\n        super().__init__(\n            f\"Experiment '{name}' cannot be applied to because your current \"\n            \"workspace contains changes which would be overwritten. Either \"\n            \"'git stash' your current changes before applying this \"\n            \"experiment, or re-run this command with '--force' to overwrite \"\n            \"your current changes.\"\n        )\n        self.name = name", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_ExpRefInfo_ExpRefInfo.parts.return._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_ExpRefInfo_ExpRefInfo.parts.return._", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 97, "end_line": 125, "span_ids": ["ExpRefInfo.__str__", "ExpRefInfo.__init__", "ExpRefInfo.parts", "ExpRefInfo", "ExpRefInfo.__repr__"], "tokens": 198}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExpRefInfo:\n\n    namespace = EXPS_NAMESPACE\n\n    def __init__(\n        self, baseline_sha: Optional[str] = None, name: Optional[str] = None,\n    ):\n        self.baseline_sha = baseline_sha\n        self.name: str = name if name else \"\"\n\n    def __str__(self):\n        return \"/\".join(self.parts)\n\n    def __repr__(self):\n        baseline = f\"'{self.baseline_sha}'\" if self.baseline_sha else \"None\"\n        name = f\"'{self.name}'\" if self.name else \"None\"\n        return f\"ExpRefInfo(baseline_sha={baseline}, name={name})\"\n\n    @property\n    def parts(self):\n        return (\n            (self.namespace,)\n            + (\n                (self.baseline_sha[:2], self.baseline_sha[2:])\n                if self.baseline_sha\n                else ()\n            )\n            + ((self.name,) if self.name else ())\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_ExpRefInfo.from_ref_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/base.py_ExpRefInfo.from_ref_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 127, "end_line": 143, "span_ids": ["ExpRefInfo.from_ref"], "tokens": 141}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExpRefInfo:\n\n    @classmethod\n    def from_ref(cls, ref: str):\n        try:\n            parts = ref.split(\"/\")\n            if (\n                len(parts) < 2\n                or len(parts) == 3\n                or len(parts) > 5\n                or \"/\".join(parts[:2]) != EXPS_NAMESPACE\n            ):\n                InvalidExpRefError(ref)\n        except ValueError:\n            raise InvalidExpRefError(ref)\n        baseline_sha = parts[2] + parts[3] if len(parts) >= 4 else None\n        name = parts[4] if len(parts) == 5 else None\n        return cls(baseline_sha, name)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/branch.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/branch.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/branch.py", "file_name": "branch.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 63, "span_ids": ["imports", "branch"], "tokens": 434}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.exceptions import InvalidArgumentError\nfrom dvc.repo import locked\nfrom dvc.repo.scm_context import scm_context\nfrom dvc.scm.base import RevError\n\nfrom .base import InvalidExpRevError\nfrom .utils import exp_refs_by_rev\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\n@scm_context\ndef branch(repo, exp_rev, branch_name, *args, **kwargs):\n    try:\n        rev = repo.scm.resolve_rev(exp_rev)\n    except RevError:\n        raise InvalidArgumentError(exp_rev)\n    ref_info = None\n\n    ref_infos = list(exp_refs_by_rev(repo.scm, rev))\n    if len(ref_infos) == 1:\n        ref_info = ref_infos[0]\n    elif len(ref_infos) > 1:\n        current_rev = repo.scm.get_rev()\n        for info in ref_infos:\n            if info.baseline_sha == current_rev:\n                ref_info = info\n                break\n        if not ref_info:\n            msg = [\n                f\"Ambiguous experiment name '{exp_rev}' can refer to \"\n                \"multiple experiments. To create a branch use a full \"\n                \"experiment ref:\",\n                \"\",\n            ]\n            msg.extend([str(info) for info in ref_infos])\n            raise InvalidArgumentError(\"\\n\".join(msg))\n\n    if not ref_info:\n        raise InvalidExpRevError(exp_rev)\n\n    branch_ref = f\"refs/heads/{branch_name}\"\n    if repo.scm.get_ref(branch_ref):\n        raise InvalidArgumentError(\n            f\"Git branch '{branch_name}' already exists.\"\n        )\n\n    target = repo.scm.get_ref(str(ref_info))\n    repo.scm.set_ref(\n        branch_ref,\n        target,\n        message=f\"dvc: Created from experiment '{ref_info.name}'\",\n    )\n    fmt = (\n        \"Git branch '%s' has been created from experiment '%s'.\\n\"\n        \"To switch to the new branch run:\\n\\n\"\n        \"\\tgit checkout %s\"\n    )\n    logger.info(fmt, branch_name, ref_info.name, branch_name)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_logging_ExecutorResult.force": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_logging_ExecutorResult.force", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 49, "span_ids": ["ExecutorResult", "imports"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport pickle\nfrom abc import ABC, abstractmethod\nfrom functools import partial\nfrom typing import (\n    TYPE_CHECKING,\n    Callable,\n    Iterable,\n    NamedTuple,\n    Optional,\n    Union,\n)\n\nfrom funcy import cached_property\n\nfrom dvc.path_info import PathInfo\nfrom dvc.repo.experiments.base import (\n    EXEC_BASELINE,\n    EXEC_BRANCH,\n    EXEC_CHECKPOINT,\n    EXEC_HEAD,\n    EXEC_MERGE,\n    EXEC_NAMESPACE,\n    EXPS_NAMESPACE,\n    EXPS_STASH,\n    CheckpointExistsError,\n    ExperimentExistsError,\n    ExpRefInfo,\n    UnchangedExperimentError,\n)\nfrom dvc.scm import SCM\nfrom dvc.stage import PipelineStage\nfrom dvc.stage.serialize import to_lockfile\nfrom dvc.utils import dict_sha256\nfrom dvc.utils.fs import remove\n\nif TYPE_CHECKING:\n    from multiprocessing import Queue\n\n    from dvc.scm.git import Git\n\nlogger = logging.getLogger(__name__)\n\n\nclass ExecutorResult(NamedTuple):\n    exp_hash: Optional[str]\n    ref_info: Optional[\"ExpRefInfo\"]\n    force: bool", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor_BaseExecutor.__init__.self.name.name": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor_BaseExecutor.__init__.self.name.name", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 52, "end_line": 79, "span_ids": ["BaseExecutor.__init__", "BaseExecutor"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n    \"\"\"Base class for executing experiments in parallel.\n\n    Args:\n        src: source Git SCM instance.\n        dvc_dir: relpath to DVC root from SCM root.\n\n    Optional keyword args:\n        branch: Existing git branch for this experiment.\n    \"\"\"\n\n    PACKED_ARGS_FILE = \"repro.dat\"\n    WARN_UNTRACKED = False\n\n    def __init__(\n        self,\n        src: \"Git\",\n        dvc_dir: str,\n        root_dir: Optional[Union[str, PathInfo]] = None,\n        branch: Optional[str] = None,\n        name: Optional[str] = None,\n        **kwargs,\n    ):\n        assert root_dir is not None\n        self._dvc_dir = dvc_dir\n        self.root_dir = root_dir\n        self._init_git(src, branch)\n        self.name = name", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor._init_git_BaseExecutor._init_git.try_.finally_.os_chdir_cwd_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor._init_git_BaseExecutor._init_git.try_.finally_.os_chdir_cwd_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 81, "end_line": 109, "span_ids": ["BaseExecutor._init_git"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    def _init_git(self, scm: \"Git\", branch: Optional[str] = None):\n        \"\"\"Init git repo and collect executor refs from the specified SCM.\"\"\"\n        from dulwich.repo import Repo as DulwichRepo\n\n        DulwichRepo.init(os.fspath(self.root_dir))\n\n        cwd = os.getcwd()\n        os.chdir(self.root_dir)\n        try:\n            refspec = f\"{EXEC_NAMESPACE}/\"\n            scm.push_refspec(self.git_url, refspec, refspec)\n            if branch:\n                scm.push_refspec(self.git_url, branch, branch)\n                self.scm.set_ref(EXEC_BRANCH, branch, symbolic=True)\n            elif self.scm.get_ref(EXEC_BRANCH):\n                self.scm.remove_ref(EXEC_BRANCH)\n\n            if self.scm.get_ref(EXEC_CHECKPOINT):\n                self.scm.remove_ref(EXEC_CHECKPOINT)\n\n            # checkout EXEC_HEAD and apply EXEC_MERGE on top of it without\n            # committing\n            head = EXEC_BRANCH if branch else EXEC_HEAD\n            self.scm.checkout(head, detach=True)\n            self.scm.gitpython.repo.git.merge(\n                EXEC_MERGE, squash=True, no_commit=True\n            )\n        finally:\n            os.chdir(cwd)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.scm_BaseExecutor._TODO_come_up_with_bett": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.scm_BaseExecutor._TODO_come_up_with_bett", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 111, "end_line": 136, "span_ids": ["BaseExecutor.hash_exp", "BaseExecutor.cleanup", "BaseExecutor.dvc_dir", "BaseExecutor.git_url", "BaseExecutor.scm"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    @cached_property\n    def scm(self):\n        return SCM(self.root_dir)\n\n    @property\n    @abstractmethod\n    def git_url(self) -> str:\n        pass\n\n    @property\n    def dvc_dir(self) -> str:\n        return os.path.join(self.root_dir, self._dvc_dir)\n\n    @staticmethod\n    def hash_exp(stages: Iterable[\"PipelineStage\"]) -> str:\n        exp_data = {}\n        for stage in stages:\n            if isinstance(stage, PipelineStage):\n                exp_data.update(to_lockfile(stage))\n        return dict_sha256(exp_data)\n\n    def cleanup(self):\n        self.scm.close()\n        del self.scm\n\n    # TODO: come up with better way to stash repro arguments", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.pack_repro_args_BaseExecutor.unpack_repro_args.return.data_args_data_kwarg": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.pack_repro_args_BaseExecutor.unpack_repro_args.return.data_args_data_kwarg", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 135, "end_line": 157, "span_ids": ["BaseExecutor.unpack_repro_args", "BaseExecutor.pack_repro_args"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n    @staticmethod\n    def pack_repro_args(path, *args, tree=None, extra=None, **kwargs):\n        dpath = os.path.dirname(path)\n        if tree:\n            open_func = tree.open\n            tree.makedirs(dpath)\n        else:\n            from dvc.utils.fs import makedirs\n\n            open_func = open\n            makedirs(dpath, exist_ok=True)\n\n        data = {\"args\": args, \"kwargs\": kwargs}\n        if extra is not None:\n            data[\"extra\"] = extra\n        with open_func(path, \"wb\") as fobj:\n            pickle.dump(data, fobj)\n\n    @staticmethod\n    def unpack_repro_args(path):\n        with open(path, \"rb\") as fobj:\n            data = pickle.load(fobj)\n        return data[\"args\"], data[\"kwargs\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.fetch_exps_BaseExecutor.fetch_exps.for_ref_in_self_scm_iter_.if_not_ref_startswith_EXE.refs_append_ref_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.fetch_exps_BaseExecutor.fetch_exps.for_ref_in_self_scm_iter_.if_not_ref_startswith_EXE.refs_append_ref_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 159, "end_line": 176, "span_ids": ["BaseExecutor.fetch_exps"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    def fetch_exps(\n        self,\n        dest_scm: \"Git\",\n        force: bool = False,\n        on_diverged: Callable[[str, bool], None] = None,\n    ) -> Iterable[str]:\n        \"\"\"Fetch reproduced experiments into the specified SCM.\n\n        Args:\n            dest_scm: Destination Git instance.\n            force: If True, diverged refs will be overwritten\n            on_diverged: Callback in the form on_diverged(ref, is_checkpoint)\n                to be called when an experiment ref has diverged.\n        \"\"\"\n        refs = []\n        for ref in self.scm.iter_refs(base=EXPS_NAMESPACE):\n            if not ref.startswith(EXEC_NAMESPACE) and ref != EXPS_STASH:\n                refs.append(ref)\n        # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.fetch_exps.on_diverged_ref_BaseExecutor.fetch_exps.return.refs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.fetch_exps.on_diverged_ref_BaseExecutor.fetch_exps.return.refs", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 178, "end_line": 206, "span_ids": ["BaseExecutor.fetch_exps"], "tokens": 280}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    def fetch_exps(\n        self,\n        dest_scm: \"Git\",\n        force: bool = False,\n        on_diverged: Callable[[str, bool], None] = None,\n    ) -> Iterable[str]:\n        # ... other code\n\n        def on_diverged_ref(orig_ref: str, new_rev: str):\n            orig_rev = dest_scm.get_ref(orig_ref)\n            if dest_scm.diff(orig_rev, new_rev):\n                if force:\n                    logger.debug(\n                        \"Replacing existing experiment '%s'\", orig_ref,\n                    )\n                    return True\n                if on_diverged:\n                    checkpoint = self.scm.get_ref(EXEC_CHECKPOINT) is not None\n                    on_diverged(orig_ref, checkpoint)\n            logger.debug(\"Reproduced existing experiment '%s'\", orig_ref)\n            return False\n\n        # fetch experiments\n        dest_scm.fetch_refspecs(\n            self.git_url,\n            [f\"{ref}:{ref}\" for ref in refs],\n            on_diverged=on_diverged_ref,\n            force=force,\n        )\n        # update last run checkpoint (if it exists)\n        if self.scm.get_ref(EXEC_CHECKPOINT):\n            dest_scm.fetch_refspecs(\n                self.git_url,\n                [f\"{EXEC_CHECKPOINT}:{EXEC_CHECKPOINT}\"],\n                force=True,\n            )\n        return refs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.reproduce_BaseExecutor.reproduce.repro_force.False": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.reproduce_BaseExecutor.reproduce.repro_force.False", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 208, "end_line": 243, "span_ids": ["BaseExecutor.reproduce"], "tokens": 284}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    @classmethod\n    def reproduce(\n        cls,\n        dvc_dir: Optional[str],\n        rev: str,\n        queue: Optional[\"Queue\"] = None,\n        rel_cwd: Optional[str] = None,\n        name: Optional[str] = None,\n        log_level: Optional[int] = None,\n    ) -> \"ExecutorResult\":\n        \"\"\"Run dvc repro and return the result.\n\n        Returns tuple of (exp_hash, exp_ref, force) where exp_hash is the\n            experiment hash (or None on error), exp_ref is the experiment ref,\n            and force is a bool specifying whether or not this experiment\n            should force overwrite any existing duplicates.\n        \"\"\"\n        from dvc.repo import Repo\n        from dvc.repo.checkout import checkout as dvc_checkout\n        from dvc.repo.reproduce import reproduce as dvc_reproduce\n\n        unchanged = []\n\n        if queue is not None:\n            queue.put((rev, os.getpid()))\n        if log_level is not None:\n            cls._set_log_level(log_level)\n\n        def filter_pipeline(stages):\n            unchanged.extend(\n                [stage for stage in stages if isinstance(stage, PipelineStage)]\n            )\n\n        exp_hash: Optional[str] = None\n        exp_ref: Optional[\"ExpRefInfo\"] = None\n        repro_force: bool = False\n        # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.reproduce.try__BaseExecutor.reproduce.return.ExecutorResult_exp_hash_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.reproduce.try__BaseExecutor.reproduce.return.ExecutorResult_exp_hash_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 247, "end_line": 329, "span_ids": ["BaseExecutor.reproduce"], "tokens": 718}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    @classmethod\n    def reproduce(\n        cls,\n        dvc_dir: Optional[str],\n        rev: str,\n        queue: Optional[\"Queue\"] = None,\n        rel_cwd: Optional[str] = None,\n        name: Optional[str] = None,\n        log_level: Optional[int] = None,\n    ) -> \"ExecutorResult\":\n        # ... other code\n\n        try:\n            dvc = Repo(dvc_dir)\n            if dvc_dir is not None:\n                old_cwd: Optional[str] = os.getcwd()\n                if rel_cwd:\n                    os.chdir(os.path.join(dvc.root_dir, rel_cwd))\n                else:\n                    os.chdir(dvc.root_dir)\n            else:\n                old_cwd = None\n            logger.debug(\"Running repro in '%s'\", os.getcwd())\n\n            args_path = os.path.join(\n                dvc.tmp_dir, BaseExecutor.PACKED_ARGS_FILE\n            )\n            if os.path.exists(args_path):\n                args, kwargs = BaseExecutor.unpack_repro_args(args_path)\n                remove(args_path)\n            else:\n                args = []\n                kwargs = {}\n\n            repro_force = kwargs.get(\"force\", False)\n            logger.debug(\"force = %s\", str(repro_force))\n\n            # NOTE: for checkpoint experiments we handle persist outs slightly\n            # differently than normal:\n            #\n            # - checkpoint out may not yet exist if this is the first time this\n            #   experiment has been run, this is not an error condition for\n            #   experiments\n            # - at the start of a repro run, we need to remove the persist out\n            #   and restore it to its last known (committed) state (which may\n            #   be removed/does not yet exist) so that our executor workspace\n            #   is not polluted with the (persistent) out from an unrelated\n            #   experiment run\n            dvc_checkout(dvc, force=True, quiet=True, allow_missing=True)\n\n            checkpoint_func = partial(\n                cls.checkpoint_callback, dvc.scm, name, repro_force\n            )\n            stages = dvc_reproduce(\n                dvc,\n                *args,\n                on_unchanged=filter_pipeline,\n                checkpoint_func=checkpoint_func,\n                **kwargs,\n            )\n\n            exp_hash = cls.hash_exp(stages)\n            try:\n                cls.commit(\n                    dvc.scm,\n                    exp_hash,\n                    exp_name=name,\n                    force=repro_force,\n                    checkpoint=any(stage.is_checkpoint for stage in stages),\n                )\n            except UnchangedExperimentError:\n                pass\n            ref = dvc.scm.get_ref(EXEC_BRANCH, follow=False)\n            if ref:\n                exp_ref = ExpRefInfo.from_ref(ref)\n            if cls.WARN_UNTRACKED:\n                untracked = dvc.scm.untracked_files()\n                if untracked:\n                    logger.warning(\n                        \"The following untracked files were present in the \"\n                        \"experiment directory after reproduction but will \"\n                        \"not be included in experiment commits:\\n\"\n                        \"\\t%s\",\n                        \", \".join(untracked),\n                    )\n        finally:\n            if dvc:\n                dvc.scm.close()\n            if old_cwd:\n                os.chdir(old_cwd)\n\n        # ideally we would return stages here like a normal repro() call, but\n        # stages is not currently picklable and cannot be returned across\n        # multiprocessing calls\n        return ExecutorResult(exp_hash, exp_ref, repro_force)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.checkpoint_callback_BaseExecutor.checkpoint_callback.try_.except_UnchangedExperimen.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.checkpoint_callback_BaseExecutor.checkpoint_callback.try_.except_UnchangedExperimen.pass", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 329, "end_line": 345, "span_ids": ["BaseExecutor.checkpoint_callback"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    @classmethod\n    def checkpoint_callback(\n        cls,\n        scm: \"Git\",\n        name: Optional[str],\n        force: bool,\n        unchanged: Iterable[\"PipelineStage\"],\n        stages: Iterable[\"PipelineStage\"],\n    ):\n        try:\n            exp_hash = cls.hash_exp(list(stages) + list(unchanged))\n            exp_rev = cls.commit(\n                scm, exp_hash, exp_name=name, force=force, checkpoint=True\n            )\n            logger.info(\"Checkpoint experiment iteration '%s'.\", exp_rev[:7])\n        except UnchangedExperimentError:\n            pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.commit_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/base.py_BaseExecutor.commit_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 349, "end_line": 400, "span_ids": ["BaseExecutor._set_log_level", "BaseExecutor.commit"], "tokens": 423}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseExecutor(ABC):\n\n    @classmethod\n    def commit(\n        cls,\n        scm: \"Git\",\n        exp_hash: str,\n        exp_name: Optional[str] = None,\n        force: bool = False,\n        checkpoint: bool = False,\n    ):\n        \"\"\"Commit stages as an experiment and return the commit SHA.\"\"\"\n        rev = scm.get_rev()\n        if not scm.is_dirty(untracked_files=True):\n            logger.debug(\"No changes to commit\")\n            raise UnchangedExperimentError(rev)\n\n        branch = scm.get_ref(EXEC_BRANCH, follow=False)\n        if branch:\n            old_ref = rev\n            logger.debug(\"Commit to current experiment branch '%s'\", branch)\n        else:\n            baseline_rev = scm.get_ref(EXEC_BASELINE)\n            name = exp_name if exp_name else f\"exp-{exp_hash[:5]}\"\n            ref_info = ExpRefInfo(baseline_rev, name)\n            branch = str(ref_info)\n            old_ref = None\n            if not force and scm.get_ref(branch):\n                if checkpoint:\n                    raise CheckpointExistsError(ref_info.name)\n                raise ExperimentExistsError(ref_info.name)\n            logger.debug(\"Commit to new experiment branch '%s'\", branch)\n\n        scm.gitpython.repo.git.add(update=True)\n        scm.commit(f\"dvc: commit experiment {exp_hash}\", no_verify=True)\n        new_rev = scm.get_rev()\n        scm.set_ref(branch, new_rev, old_ref=old_ref)\n        scm.set_ref(EXEC_BRANCH, branch, symbolic=True)\n        if checkpoint:\n            scm.set_ref(EXEC_CHECKPOINT, new_rev)\n        return new_rev\n\n    @staticmethod\n    def _set_log_level(level):\n        from dvc.logger import disable_other_loggers\n\n        # When executor.reproduce is run in a multiprocessing child process,\n        # dvc.main will not be called for that child process so we need to\n        # setup logging ourselves\n        dvc_logger = logging.getLogger(\"dvc\")\n        disable_other_loggers()\n        if level is not None:\n            dvc_logger.setLevel(level)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/local.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/executor/local.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/executor/local.py", "file_name": "local.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 63, "span_ids": ["TempDirExecutor.__init__", "BaseLocalExecutor", "imports", "TempDirExecutor._config", "TempDirExecutor", "TempDirExecutor.cleanup", "BaseLocalExecutor.git_url"], "tokens": 393}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport sys\nfrom tempfile import TemporaryDirectory\nfrom typing import Optional\n\nfrom dvc.utils.fs import remove\n\nfrom .base import BaseExecutor\n\nlogger = logging.getLogger(__name__)\n\n\nclass BaseLocalExecutor(BaseExecutor):\n    \"\"\"Base local machine executor.\"\"\"\n\n    @property\n    def git_url(self) -> str:\n        root_dir = os.path.abspath(self.root_dir)\n        if os.name == \"nt\":\n            root_dir = root_dir.replace(os.sep, \"/\")\n        return f\"file://{root_dir}\"\n\n\nclass TempDirExecutor(BaseLocalExecutor):\n    \"\"\"Temp directory experiment executor.\"\"\"\n\n    WARN_UNTRACKED = True\n\n    def __init__(\n        self,\n        *args,\n        tmp_dir: Optional[str] = None,\n        cache_dir: Optional[str] = None,\n        **kwargs,\n    ):\n        self._tmp_dir = TemporaryDirectory(dir=tmp_dir)\n        kwargs[\"root_dir\"] = self._tmp_dir.name\n        super().__init__(*args, **kwargs)\n        if cache_dir:\n            self._config(cache_dir)\n        logger.debug(\n            \"Init temp dir executor in dir '%s'\", self._tmp_dir,\n        )\n\n    def _config(self, cache_dir):\n        local_config = os.path.join(self.dvc_dir, \"config.local\")\n        logger.debug(\"Writing experiments local config '%s'\", local_config)\n        with open(local_config, \"w\") as fobj:\n            fobj.write(f\"[cache]\\n    dir = {cache_dir}\")\n\n    def cleanup(self):\n        super().cleanup()\n        logger.debug(\"Removing tmpdir '%s'\", self._tmp_dir)\n        try:\n            self._tmp_dir.cleanup()\n        except PermissionError:\n            if os.name == \"nt\" and sys.version_info < (3, 8):\n                # see https://bugs.python.org/issue26660\n                remove(self._tmp_dir.name)\n                return\n            raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/ls.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/ls.py_logging_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/ls.py", "file_name": "ls.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 51, "span_ids": ["imports", "ls"], "tokens": 298}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom collections import defaultdict\n\nfrom dvc.repo import locked\nfrom dvc.repo.scm_context import scm_context\nfrom dvc.scm.base import RevError\n\nfrom .utils import (\n    exp_refs,\n    exp_refs_by_baseline,\n    remote_exp_refs,\n    remote_exp_refs_by_baseline,\n)\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\n@scm_context\ndef ls(repo, *args, rev=None, git_remote=None, all_=False, **kwargs):\n    from dvc.scm.git import Git\n\n    if rev:\n        try:\n            rev = repo.scm.resolve_rev(rev)\n        except RevError:\n            if not (git_remote and Git.is_sha(rev)):\n                # This could be a remote rev that has not been fetched yet\n                raise\n    elif not all_:\n        rev = repo.scm.get_rev()\n\n    results = defaultdict(list)\n\n    if rev:\n        if git_remote:\n            gen = remote_exp_refs_by_baseline(repo.scm, git_remote, rev)\n        else:\n            gen = exp_refs_by_baseline(repo.scm, rev)\n        for info in gen:\n            results[rev].append(info.name)\n    elif all_:\n        if git_remote:\n            gen = remote_exp_refs(repo.scm, git_remote)\n        else:\n            gen = exp_refs(repo.scm)\n        for info in gen:\n            results[info.baseline_sha].append(info.name)\n\n    return results", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/pull.py_logging_pull.if_pull_cache_._pull_cache_repo_exp_ref": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/pull.py_logging_pull.if_pull_cache_._pull_cache_repo_exp_ref", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/pull.py", "file_name": "pull.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 35, "span_ids": ["imports", "pull"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.exceptions import DvcException, InvalidArgumentError\nfrom dvc.repo import locked\nfrom dvc.repo.scm_context import scm_context\n\nfrom .utils import exp_commits, remote_exp_refs_by_name\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\n@scm_context\ndef pull(\n    repo, git_remote, exp_name, *args, force=False, pull_cache=False, **kwargs\n):\n    exp_ref = _get_exp_ref(repo, git_remote, exp_name)\n\n    def on_diverged(refname: str, rev: str) -> bool:\n        if repo.scm.get_ref(refname) == rev:\n            return True\n        raise DvcException(\n            f\"Local experiment '{exp_name}' has diverged from remote \"\n            \"experiment with the same name. To override the local experiment \"\n            \"re-run with '--force'.\"\n        )\n\n    refspec = f\"{exp_ref}:{exp_ref}\"\n    logger.debug(\"git pull experiment '%s' -> '%s'\", git_remote, refspec)\n    repo.scm.fetch_refspecs(\n        git_remote, [refspec], force=force, on_diverged=on_diverged\n    )\n\n    if pull_cache:\n        _pull_cache(repo, exp_ref, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/pull.py__get_exp_ref_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/pull.py__get_exp_ref_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/pull.py", "file_name": "pull.py", "file_type": "text/x-python", "category": "implementation", "start_line": 38, "end_line": 73, "span_ids": ["_get_exp_ref", "_pull_cache"], "tokens": 284}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_exp_ref(repo, git_remote, exp_name):\n    if exp_name.startswith(\"refs/\"):\n        return exp_name\n\n    exp_refs = list(remote_exp_refs_by_name(repo.scm, git_remote, exp_name))\n    if not exp_refs:\n        raise InvalidArgumentError(\n            f\"Experiment '{exp_name}' does not exist in '{git_remote}'\"\n        )\n    if len(exp_refs) > 1:\n        cur_rev = repo.scm.get_rev()\n        for info in exp_refs:\n            if info.baseline_sha == cur_rev:\n                return info\n        msg = [\n            (\n                f\"Ambiguous name '{exp_name}' refers to multiple \"\n                \"experiments in '{git_remote}'. Use full refname to pull one \"\n                \"of the following:\"\n            ),\n            \"\",\n        ]\n        msg.extend([f\"\\t{info}\" for info in exp_refs])\n        raise InvalidArgumentError(\"\\n\".join(msg))\n    return exp_refs[0]\n\n\ndef _pull_cache(\n    repo, exp_ref, dvc_remote=None, jobs=None, run_cache=False,\n):\n    revs = list(exp_commits(repo.scm, [exp_ref]))\n    logger.debug(\"dvc fetch experiment '%s'\", exp_ref)\n    repo.fetch(\n        jobs=jobs, remote=dvc_remote, run_cache=run_cache, revs=revs,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/push.py_logging_push.if_push_cache_._push_cache_repo_exp_ref": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/push.py_logging_push.if_push_cache_._push_cache_repo_exp_ref", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/push.py", "file_name": "push.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 35, "span_ids": ["imports", "push"], "tokens": 258}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.exceptions import DvcException, InvalidArgumentError\nfrom dvc.repo import locked\nfrom dvc.repo.scm_context import scm_context\n\nfrom .utils import exp_commits, exp_refs_by_name\n\nlogger = logging.getLogger(__name__)\n\n\n@locked\n@scm_context\ndef push(\n    repo, git_remote, exp_name, *args, force=False, push_cache=False, **kwargs,\n):\n    exp_ref = _get_exp_ref(repo, exp_name)\n\n    def on_diverged(refname: str, rev: str) -> bool:\n        if repo.scm.get_ref(refname) == rev:\n            return True\n        raise DvcException(\n            f\"Local experiment '{exp_name}' has diverged from remote \"\n            \"experiment with the same name. To override the remote experiment \"\n            \"re-run with '--force'.\"\n        )\n\n    refname = str(exp_ref)\n    logger.debug(\"git push experiment '%s' -> '%s'\", exp_ref, git_remote)\n    repo.scm.push_refspec(\n        git_remote, refname, refname, force=force, on_diverged=on_diverged\n    )\n\n    if push_cache:\n        _push_cache(repo, exp_ref, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/push.py__get_exp_ref_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/push.py__get_exp_ref_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/push.py", "file_name": "push.py", "file_type": "text/x-python", "category": "implementation", "start_line": 38, "end_line": 73, "span_ids": ["_get_exp_ref", "_push_cache"], "tokens": 270}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_exp_ref(repo, exp_name):\n    if exp_name.startswith(\"refs/\"):\n        return exp_name\n\n    exp_refs = list(exp_refs_by_name(repo.scm, exp_name))\n    if not exp_refs:\n        raise InvalidArgumentError(\n            f\"'{exp_name}' is not a valid experiment name\"\n        )\n    if len(exp_refs) > 1:\n        cur_rev = repo.scm.get_rev()\n        for info in exp_refs:\n            if info.baseline_sha == cur_rev:\n                return info\n        msg = [\n            (\n                f\"Ambiguous name '{exp_name}' refers to multiple \"\n                \"experiments. Use full refname to push one of the \"\n                \"following:\"\n            ),\n            \"\",\n        ]\n        msg.extend([f\"\\t{info}\" for info in exp_refs])\n        raise InvalidArgumentError(\"\\n\".join(msg))\n    return exp_refs[0]\n\n\ndef _push_cache(\n    repo, exp_ref, dvc_remote=None, jobs=None, run_cache=False,\n):\n    revs = list(exp_commits(repo.scm, [exp_ref]))\n    logger.debug(\"dvc push experiment '%s'\", exp_ref)\n    repo.push(\n        jobs=jobs, remote=dvc_remote, run_cache=run_cache, revs=revs,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/show.py_logging__collect_experiment_commit.return.res": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/show.py_logging__collect_experiment_commit.return.res", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 47, "span_ids": ["imports", "_collect_experiment_commit"], "tokens": 330}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom collections import OrderedDict, defaultdict\nfrom datetime import datetime\n\nfrom dvc.repo import locked\nfrom dvc.repo.experiments.base import ExpRefInfo\nfrom dvc.repo.metrics.show import _collect_metrics, _read_metrics\nfrom dvc.repo.params.show import _collect_configs, _read_params\n\nlogger = logging.getLogger(__name__)\n\n\ndef _collect_experiment_commit(repo, rev, stash=False, sha_only=True):\n    res = defaultdict(dict)\n    for rev in repo.brancher(revs=[rev]):\n        if rev == \"workspace\":\n            res[\"timestamp\"] = None\n        else:\n            commit = repo.scm.resolve_commit(rev)\n            res[\"timestamp\"] = datetime.fromtimestamp(commit.committed_date)\n\n        configs = _collect_configs(repo, rev=rev)\n        params = _read_params(repo, configs, rev)\n        if params:\n            res[\"params\"] = params\n\n        res[\"queued\"] = stash\n        if not stash:\n            metrics = _collect_metrics(repo, None, rev, False)\n            vals = _read_metrics(repo, metrics, rev)\n            res[\"metrics\"] = vals\n\n        if not sha_only and rev != \"workspace\":\n            for refspec in [\"refs/tags\", \"refs/heads\"]:\n                name = repo.scm.describe(rev, base=refspec)\n                if name:\n                    break\n            if not name:\n                if stash:\n                    pass\n                else:\n                    name = repo.experiments.get_exact_name(rev)\n            if name:\n                name = name.rsplit(\"/\")[-1]\n                res[\"name\"] = name\n\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/show.py__collect_experiment_branch__collect_experiment_branch.return.res": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/show.py__collect_experiment_branch__collect_experiment_branch.return.res", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 50, "end_line": 71, "span_ids": ["_collect_experiment_branch"], "tokens": 183}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _collect_experiment_branch(res, repo, branch, baseline, **kwargs):\n    exp_rev = repo.scm.resolve_rev(branch)\n    prev = None\n    revs = list(repo.scm.branch_revs(exp_rev, baseline))\n    for rev in revs:\n        collected_exp = _collect_experiment_commit(repo, rev, **kwargs)\n        if len(revs) > 1:\n            exp = {\"checkpoint_tip\": exp_rev}\n            if prev:\n                res[prev][\"checkpoint_parent\"] = rev\n            if rev in res:\n                res[rev].update(exp)\n                res.move_to_end(rev)\n            else:\n                exp.update(collected_exp)\n        else:\n            exp = collected_exp\n        res[rev] = exp\n        prev = rev\n    if len(revs) > 1:\n        res[prev][\"checkpoint_parent\"] = baseline\n    return res", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/utils.py_from_typing_import_TYPE_C_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/utils.py_from_typing_import_TYPE_C_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 86, "span_ids": ["exp_refs_by_baseline", "imports", "remote_exp_refs", "remote_exp_refs_by_name", "exp_refs_by_rev", "exp_refs", "remote_exp_refs_by_baseline", "exp_refs_by_name", "exp_commits"], "tokens": 718}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from typing import TYPE_CHECKING, Generator, Iterable\n\nfrom .base import EXEC_NAMESPACE, EXPS_NAMESPACE, EXPS_STASH, ExpRefInfo\n\nif TYPE_CHECKING:\n    from dvc.scm.git import Git\n\n\ndef exp_refs(scm: \"Git\") -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all experiment refs.\"\"\"\n    for ref in scm.iter_refs(base=EXPS_NAMESPACE):\n        if ref.startswith(EXEC_NAMESPACE) or ref == EXPS_STASH:\n            continue\n        yield ExpRefInfo.from_ref(ref)\n\n\ndef exp_refs_by_rev(\n    scm: \"Git\", rev: str\n) -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all experiment refs pointing to the specified revision.\"\"\"\n    for ref in scm.get_refs_containing(rev, EXPS_NAMESPACE):\n        if not (ref.startswith(EXEC_NAMESPACE) or ref == EXPS_STASH):\n            yield ExpRefInfo.from_ref(ref)\n\n\ndef exp_refs_by_name(\n    scm: \"Git\", name: str\n) -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all experiment refs matching the specified name.\"\"\"\n    for ref_info in exp_refs(scm):\n        if ref_info.name == name:\n            yield ref_info\n\n\ndef exp_refs_by_baseline(\n    scm: \"Git\", rev: str\n) -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all experiment refs with the specified baseline.\"\"\"\n    ref_info = ExpRefInfo(baseline_sha=rev)\n    for ref in scm.iter_refs(base=str(ref_info)):\n        if ref.startswith(EXEC_NAMESPACE) or ref == EXPS_STASH:\n            continue\n        yield ExpRefInfo.from_ref(ref)\n\n\ndef remote_exp_refs(\n    scm: \"Git\", url: str\n) -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all remote experiment refs.\"\"\"\n    for ref in scm.iter_remote_refs(url, base=EXPS_NAMESPACE):\n        if ref.startswith(EXEC_NAMESPACE) or ref == EXPS_STASH:\n            continue\n        yield ExpRefInfo.from_ref(ref)\n\n\ndef remote_exp_refs_by_name(\n    scm: \"Git\", url: str, name: str\n) -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all remote experiment refs matching the specified name.\"\"\"\n    for ref_info in remote_exp_refs(scm, url):\n        if ref_info.name == name:\n            yield ref_info\n\n\ndef remote_exp_refs_by_baseline(\n    scm: \"Git\", url: str, rev: str\n) -> Generator[\"ExpRefInfo\", None, None]:\n    \"\"\"Iterate over all remote experiment refs with the specified baseline.\"\"\"\n    ref_info = ExpRefInfo(baseline_sha=rev)\n    for ref in scm.iter_remote_refs(url, base=str(ref_info)):\n        if ref.startswith(EXEC_NAMESPACE) or ref == EXPS_STASH:\n            continue\n        yield ExpRefInfo.from_ref(ref)\n\n\ndef exp_commits(\n    scm: \"Git\", ref_infos: Iterable[\"ExpRefInfo\"] = None\n) -> Generator[str, None, None]:\n    \"\"\"Iterate over all experiment commits.\"\"\"\n    shas = set()\n    refs = ref_infos if ref_infos else exp_refs(scm)\n    for ref_info in refs:\n        shas.update(scm.branch_revs(str(ref_info), ref_info.baseline_sha))\n        shas.add(ref_info.baseline_sha)\n    yield from shas", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/show.py_logging__collect_vars.return.vars_params": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/params/show.py_logging__collect_vars.return.vars_params", "embedding": null, "metadata": {"file_path": "dvc/repo/params/show.py", "file_name": "show.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 75, "span_ids": ["_collect_vars", "_collect_configs", "NoParamsError", "imports", "_is_params", "_read_params"], "tokens": 450}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nfrom collections import defaultdict\nfrom typing import TYPE_CHECKING, List\n\nfrom dvc.dependency.param import ParamsDependency\nfrom dvc.exceptions import DvcException\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import locked\nfrom dvc.repo.collect import collect\nfrom dvc.scm.base import SCMError\nfrom dvc.stage import PipelineStage\nfrom dvc.utils.serialize import LOADERS, ParseError\n\nif TYPE_CHECKING:\n    from dvc.output.base import BaseOutput\n    from dvc.repo import Repo\n\nlogger = logging.getLogger(__name__)\n\n\nclass NoParamsError(DvcException):\n    pass\n\n\ndef _is_params(dep: \"BaseOutput\"):\n    return isinstance(dep, ParamsDependency)\n\n\ndef _collect_configs(repo: \"Repo\", rev, targets=None) -> List[PathInfo]:\n    params, path_infos = collect(\n        repo,\n        targets=targets or [],\n        deps=True,\n        output_filter=_is_params,\n        rev=rev,\n    )\n    path_infos.update({p.path_info for p in params})\n    if not targets:\n        path_infos.add(\n            PathInfo(repo.root_dir) / ParamsDependency.DEFAULT_PARAMS_FILE\n        )\n    return list(path_infos)\n\n\ndef _read_params(repo, configs, rev):\n    res = {}\n    for config in configs:\n        if not repo.tree.exists(config):\n            continue\n\n        suffix = config.suffix.lower()\n        loader = LOADERS[suffix]\n        try:\n            res[str(config)] = loader(config, tree=repo.tree)\n        except ParseError:\n            logger.debug(\n                \"failed to read '%s' on '%s'\", config, rev, exc_info=True\n            )\n            continue\n\n    return res\n\n\ndef _collect_vars(repo, params):\n    vars_params = defaultdict(dict)\n    for stage in repo.stages:\n        if isinstance(stage, PipelineStage) and stage.tracked_vars:\n            for file, vars_ in stage.tracked_vars.items():\n                # `params` file are shown regardless of `tracked` or not\n                # to reduce noise and duplication, they are skipped\n                if file in params:\n                    continue\n\n                vars_params[file].update(vars_)\n    return vars_params", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_DefaultTemplate_DefaultTemplate.DEFAULT_CONTENT._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_DefaultTemplate_DefaultTemplate.DEFAULT_CONTENT._", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 110, "end_line": 134, "span_ids": ["DefaultTemplate"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DefaultTemplate(Template):\n    DEFAULT_NAME = \"default\"\n\n    DEFAULT_CONTENT = {\n        \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.json\",\n        \"data\": {\"values\": Template.anchor(\"data\")},\n        \"title\": Template.anchor(\"title\"),\n        \"width\": 300,\n        \"height\": 300,\n        \"mark\": {\"type\": \"line\"},\n        \"encoding\": {\n            \"x\": {\n                \"field\": Template.anchor(\"x\"),\n                \"type\": \"quantitative\",\n                \"title\": Template.anchor(\"x_label\"),\n            },\n            \"y\": {\n                \"field\": Template.anchor(\"y\"),\n                \"type\": \"quantitative\",\n                \"title\": Template.anchor(\"y_label\"),\n                \"scale\": {\"zero\": False},\n            },\n            \"color\": {\"field\": \"rev\", \"type\": \"nominal\"},\n        },\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_ConfusionTemplate_ConfusionTemplate.DEFAULT_CONTENT._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_ConfusionTemplate_ConfusionTemplate.DEFAULT_CONTENT._", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 137, "end_line": 216, "span_ids": ["ConfusionTemplate"], "tokens": 535}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ConfusionTemplate(Template):\n    DEFAULT_NAME = \"confusion\"\n    DEFAULT_CONTENT = {\n        \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.json\",\n        \"data\": {\"values\": Template.anchor(\"data\")},\n        \"title\": Template.anchor(\"title\"),\n        \"facet\": {\"field\": \"rev\", \"type\": \"nominal\"},\n        \"spec\": {\n            \"transform\": [\n                {\n                    \"aggregate\": [{\"op\": \"count\", \"as\": \"xy_count\"}],\n                    \"groupby\": [Template.anchor(\"y\"), Template.anchor(\"x\")],\n                },\n                {\n                    \"impute\": \"xy_count\",\n                    \"groupby\": [\"rev\", Template.anchor(\"y\")],\n                    \"key\": Template.anchor(\"x\"),\n                    \"value\": 0,\n                },\n                {\n                    \"impute\": \"xy_count\",\n                    \"groupby\": [\"rev\", Template.anchor(\"x\")],\n                    \"key\": Template.anchor(\"y\"),\n                    \"value\": 0,\n                },\n                {\n                    \"joinaggregate\": [\n                        {\"op\": \"max\", \"field\": \"xy_count\", \"as\": \"max_count\"}\n                    ],\n                    \"groupby\": [],\n                },\n                {\n                    \"calculate\": \"datum.xy_count / datum.max_count\",\n                    \"as\": \"percent_of_max\",\n                },\n            ],\n            \"encoding\": {\n                \"x\": {\n                    \"field\": Template.anchor(\"x\"),\n                    \"type\": \"nominal\",\n                    \"sort\": \"ascending\",\n                    \"title\": Template.anchor(\"x_label\"),\n                },\n                \"y\": {\n                    \"field\": Template.anchor(\"y\"),\n                    \"type\": \"nominal\",\n                    \"sort\": \"ascending\",\n                    \"title\": Template.anchor(\"y_label\"),\n                },\n            },\n            \"layer\": [\n                {\n                    \"mark\": \"rect\",\n                    \"width\": 300,\n                    \"height\": 300,\n                    \"encoding\": {\n                        \"color\": {\n                            \"field\": \"xy_count\",\n                            \"type\": \"quantitative\",\n                            \"title\": \"\",\n                            \"scale\": {\"domainMin\": 0, \"nice\": True},\n                        }\n                    },\n                },\n                {\n                    \"mark\": \"text\",\n                    \"encoding\": {\n                        \"text\": {\"field\": \"xy_count\", \"type\": \"quantitative\"},\n                        \"color\": {\n                            \"condition\": {\n                                \"test\": \"datum.percent_of_max > 0.5\",\n                                \"value\": \"white\",\n                            },\n                            \"value\": \"black\",\n                        },\n                    },\n                },\n            ],\n        },\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_ScatterTemplate_ScatterTemplate.DEFAULT_CONTENT._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_ScatterTemplate_ScatterTemplate.DEFAULT_CONTENT._", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 305, "end_line": 394, "span_ids": ["ScatterTemplate"], "tokens": 493}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ScatterTemplate(Template):\n    DEFAULT_NAME = \"scatter\"\n\n    DEFAULT_CONTENT = {\n        \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.json\",\n        \"data\": {\"values\": Template.anchor(\"data\")},\n        \"title\": Template.anchor(\"title\"),\n        \"width\": 300,\n        \"height\": 300,\n        \"layer\": [\n            {\n                \"encoding\": {\n                    \"x\": {\n                        \"field\": Template.anchor(\"x\"),\n                        \"type\": \"quantitative\",\n                        \"title\": Template.anchor(\"x_label\"),\n                    },\n                    \"y\": {\n                        \"field\": Template.anchor(\"y\"),\n                        \"type\": \"quantitative\",\n                        \"title\": Template.anchor(\"y_label\"),\n                        \"scale\": {\"zero\": False},\n                    },\n                    \"color\": {\"field\": \"rev\", \"type\": \"nominal\"},\n                },\n                \"layer\": [\n                    {\"mark\": \"point\"},\n                    {\n                        \"selection\": {\n                            \"label\": {\n                                \"type\": \"single\",\n                                \"nearest\": True,\n                                \"on\": \"mouseover\",\n                                \"encodings\": [\"x\"],\n                                \"empty\": \"none\",\n                                \"clear\": \"mouseout\",\n                            }\n                        },\n                        \"mark\": \"point\",\n                        \"encoding\": {\n                            \"opacity\": {\n                                \"condition\": {\n                                    \"selection\": \"label\",\n                                    \"value\": 1,\n                                },\n                                \"value\": 0,\n                            }\n                        },\n                    },\n                ],\n            },\n            {\n                \"transform\": [{\"filter\": {\"selection\": \"label\"}}],\n                \"layer\": [\n                    {\n                        \"encoding\": {\n                            \"text\": {\n                                \"type\": \"quantitative\",\n                                \"field\": Template.anchor(\"y\"),\n                            },\n                            \"x\": {\n                                \"field\": Template.anchor(\"x\"),\n                                \"type\": \"quantitative\",\n                            },\n                            \"y\": {\n                                \"field\": Template.anchor(\"y\"),\n                                \"type\": \"quantitative\",\n                            },\n                        },\n                        \"layer\": [\n                            {\n                                \"mark\": {\n                                    \"type\": \"text\",\n                                    \"align\": \"left\",\n                                    \"dx\": 5,\n                                    \"dy\": -5,\n                                },\n                                \"encoding\": {\n                                    \"color\": {\n                                        \"type\": \"nominal\",\n                                        \"field\": \"rev\",\n                                    }\n                                },\n                            }\n                        ],\n                    },\n                ],\n            },\n        ],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_LinearTemplate_LinearTemplate.DEFAULT_CONTENT._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/plots/template.py_LinearTemplate_LinearTemplate.DEFAULT_CONTENT._", "embedding": null, "metadata": {"file_path": "dvc/repo/plots/template.py", "file_name": "template.py", "file_type": "text/x-python", "category": "implementation", "start_line": 430, "end_line": 528, "span_ids": ["LinearTemplate"], "tokens": 544}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class LinearTemplate(Template):\n    DEFAULT_NAME = \"linear\"\n\n    DEFAULT_CONTENT = {\n        \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.json\",\n        \"data\": {\"values\": Template.anchor(\"data\")},\n        \"title\": Template.anchor(\"title\"),\n        \"width\": 300,\n        \"height\": 300,\n        \"layer\": [\n            {\n                \"encoding\": {\n                    \"x\": {\n                        \"field\": Template.anchor(\"x\"),\n                        \"type\": \"quantitative\",\n                        \"title\": Template.anchor(\"x_label\"),\n                    },\n                    \"y\": {\n                        \"field\": Template.anchor(\"y\"),\n                        \"type\": \"quantitative\",\n                        \"title\": Template.anchor(\"y_label\"),\n                        \"scale\": {\"zero\": False},\n                    },\n                    \"color\": {\"field\": \"rev\", \"type\": \"nominal\"},\n                },\n                \"layer\": [\n                    {\"mark\": \"line\"},\n                    {\n                        \"selection\": {\n                            \"label\": {\n                                \"type\": \"single\",\n                                \"nearest\": True,\n                                \"on\": \"mouseover\",\n                                \"encodings\": [\"x\"],\n                                \"empty\": \"none\",\n                                \"clear\": \"mouseout\",\n                            }\n                        },\n                        \"mark\": \"point\",\n                        \"encoding\": {\n                            \"opacity\": {\n                                \"condition\": {\n                                    \"selection\": \"label\",\n                                    \"value\": 1,\n                                },\n                                \"value\": 0,\n                            }\n                        },\n                    },\n                ],\n            },\n            {\n                \"transform\": [{\"filter\": {\"selection\": \"label\"}}],\n                \"layer\": [\n                    {\n                        \"mark\": {\"type\": \"rule\", \"color\": \"gray\"},\n                        \"encoding\": {\n                            \"x\": {\n                                \"field\": Template.anchor(\"x\"),\n                                \"type\": \"quantitative\",\n                            }\n                        },\n                    },\n                    {\n                        \"encoding\": {\n                            \"text\": {\n                                \"type\": \"quantitative\",\n                                \"field\": Template.anchor(\"y\"),\n                            },\n                            \"x\": {\n                                \"field\": Template.anchor(\"x\"),\n                                \"type\": \"quantitative\",\n                            },\n                            \"y\": {\n                                \"field\": Template.anchor(\"y\"),\n                                \"type\": \"quantitative\",\n                            },\n                        },\n                        \"layer\": [\n                            {\n                                \"mark\": {\n                                    \"type\": \"text\",\n                                    \"align\": \"left\",\n                                    \"dx\": 5,\n                                    \"dy\": -5,\n                                },\n                                \"encoding\": {\n                                    \"color\": {\n                                        \"type\": \"nominal\",\n                                        \"field\": \"rev\",\n                                    }\n                                },\n                            }\n                        ],\n                    },\n                ],\n            },\n        ],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py_reproduce_reproduce.return._reproduce_stages_self_gr": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py_reproduce_reproduce.return._reproduce_stages_self_gr", "embedding": null, "metadata": {"file_path": "dvc/repo/reproduce.py", "file_name": "reproduce.py", "file_type": "text/x-python", "category": "implementation", "start_line": 69, "end_line": 120, "span_ids": ["reproduce"], "tokens": 295}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@locked\n@scm_context\ndef reproduce(\n    self: \"Repo\",\n    targets=None,\n    recursive=False,\n    pipeline=False,\n    all_pipelines=False,\n    **kwargs,\n):\n    glob = kwargs.pop(\"glob\", False)\n    accept_group = not glob\n\n    if isinstance(targets, str):\n        targets = [targets]\n\n    if not all_pipelines and not targets:\n        from dvc.dvcfile import PIPELINE_FILE\n\n        targets = [PIPELINE_FILE]\n\n    interactive = kwargs.get(\"interactive\", False)\n    if not interactive:\n        kwargs[\"interactive\"] = self.config[\"core\"].get(\"interactive\", False)\n\n    stages = set()\n    if pipeline or all_pipelines:\n        pipelines = get_pipelines(self.graph)\n        if all_pipelines:\n            used_pipelines = pipelines\n        else:\n            used_pipelines = []\n            for target in targets:\n                stage = self.stage.get_target(target)\n                used_pipelines.append(get_pipeline(pipelines, stage))\n\n        for pline in used_pipelines:\n            for stage in pline:\n                if pline.in_degree(stage) == 0:\n                    stages.add(stage)\n    else:\n        for target in targets:\n            stages.update(\n                self.stage.collect(\n                    target,\n                    recursive=recursive,\n                    accept_group=accept_group,\n                    glob=glob,\n                )\n            )\n\n    return _reproduce_stages(self.graph, list(stages), **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py__get_steps_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py__get_steps_", "embedding": null, "metadata": {"file_path": "dvc/repo/reproduce.py", "file_name": "reproduce.py", "file_type": "text/x-python", "category": "implementation", "start_line": 203, "end_line": 244, "span_ids": ["_get_steps", "_repro_callback"], "tokens": 319}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _get_steps(G, stages, downstream, single_item):\n    import networkx as nx\n\n    active = G.copy()\n    if not single_item:\n        # NOTE: frozen stages don't matter for single_item\n        for stage in G:\n            if stage.frozen:\n                # NOTE: disconnect frozen stage from its dependencies\n                active.remove_edges_from(G.out_edges(stage))\n\n    all_pipelines = []\n    for stage in stages:\n        if downstream:\n            # NOTE (py3 only):\n            # Python's `deepcopy` defaults to pickle/unpickle the object.\n            # Stages are complex objects (with references to `repo`,\n            # `outs`, and `deps`) that cause struggles when you try\n            # to serialize them. We need to create a copy of the graph\n            # itself, and then reverse it, instead of using\n            # graph.reverse() directly because it calls `deepcopy`\n            # underneath -- unless copy=False is specified.\n            nodes = nx.dfs_postorder_nodes(active.reverse(copy=False), stage)\n            all_pipelines += reversed(list(nodes))\n        else:\n            all_pipelines += nx.dfs_postorder_nodes(active, stage)\n\n    steps = []\n    for stage in all_pipelines:\n        if stage not in steps:\n            # NOTE: order of steps still matters for single_item\n            if single_item and stage not in stages:\n                continue\n\n            steps.append(stage)\n\n    return steps\n\n\ndef _repro_callback(experiments_callback, unchanged, stages):\n    experiments_callback(unchanged, stages)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.collect_granular_StageLoad.collect_granular.return._StageInfo_stage_for_sta": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.collect_granular_StageLoad.collect_granular.return._StageInfo_stage_for_sta", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 263, "end_line": 322, "span_ids": ["StageLoad.collect_granular"], "tokens": 464}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoad:\n\n    def collect_granular(\n        self,\n        target: str = None,\n        with_deps: bool = False,\n        recursive: bool = False,\n        graph: \"DiGraph\" = None,\n        accept_group: bool = False,\n    ) -> List[StageInfo]:\n        \"\"\"Collects a list of (stage, filter_info) from the given target.\n\n        Priority is in the order of following in case of ambiguity:\n        - .dvc file or .yaml file\n        - dir if recursive and directory exists\n        - stage_name\n        - output file\n\n        Args:\n            target: if not provided, all of the stages without any filters are\n                returned.\n                If `target` is a path to a dvc-tracked output,\n                a (stage, output_path_info) is returned.\n                Otherwise, the details above for `target` in `collect()`\n                applies.\n\n            (see `collect()` for other arguments)\n        \"\"\"\n        if not target:\n            return [StageInfo(stage) for stage in self.repo.stages]\n\n        stages, file, _ = _collect_specific_target(\n            self, target, with_deps, recursive, accept_group\n        )\n        if not stages:\n            if not (recursive and self.tree.isdir(target)):\n                try:\n                    (out,) = self.repo.find_outs_by_path(target, strict=False)\n                    filter_info = PathInfo(os.path.abspath(target))\n                    return [StageInfo(out.stage, filter_info)]\n                except OutputNotFoundError:\n                    pass\n\n            try:\n                stages = self.collect(\n                    target,\n                    with_deps,\n                    recursive,\n                    graph,\n                    accept_group=accept_group,\n                )\n            except StageFileDoesNotExistError as exc:\n                # collect() might try to use `target` as a stage name\n                # and throw error that dvc.yaml does not exist, whereas it\n                # should say that both stage name and file does not exist.\n                if file and is_valid_filename(file):\n                    raise\n                raise NoOutputOrStageError(target, exc.file) from exc\n            except StageNotFound as exc:\n                raise NoOutputOrStageError(target, exc.file) from exc\n\n        return [StageInfo(stage) for stage in stages]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.collect_repo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/stage.py_StageLoad.collect_repo_", "embedding": null, "metadata": {"file_path": "dvc/repo/stage.py", "file_name": "stage.py", "file_type": "text/x-python", "category": "implementation", "start_line": 324, "end_line": 357, "span_ids": ["StageLoad.collect_repo"], "tokens": 250}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoad:\n\n    def collect_repo(self, onerror=None):\n        \"\"\"Collects all of the stages present in the DVC repo.\n\n        Args:\n            onerror (optional): callable that will be called with two args:\n                the filepath whose collection failed and the exc instance.\n                The decision to raise error is with the callback.\n                Otherwise, the file will be skipped, and dvc will partially\n                load the stages.\n        \"\"\"\n        stages = []\n        outs = set()\n        for root, dirs, files in self.tree.walk(self.repo.root_dir):\n            for file_name in filter(is_valid_filename, files):\n                file_path = os.path.join(root, file_name)\n\n                try:\n                    new_stages = self.load_file(file_path)\n                except DvcException as exc:\n                    if onerror:\n                        onerror(relpath(file_path), exc)\n                        continue\n                    raise\n\n                stages.extend(new_stages)\n                outs.update(\n                    out.fspath\n                    for stage in new_stages\n                    for out in stage.outs\n                    if out.scheme == \"local\"\n                )\n            dirs[:] = [d for d in dirs if os.path.join(root, d) not in outs]\n        return stages", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git_Git.ignore_file.return.self_GITIGNORE": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git_Git.ignore_file.return.self_GITIGNORE", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 29, "end_line": 105, "span_ids": ["Git.__init__", "Git.stash", "Git.dir", "Git.clone", "Git.is_sha", "Git._get_git_dir", "Git.pygit2", "Git.dulwich", "Git", "Git.gitpython", "Git.ignore_file"], "tokens": 445}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n    \"\"\"Class for managing Git.\"\"\"\n\n    GITIGNORE = \".gitignore\"\n    GIT_DIR = \".git\"\n    DEFAULT_BACKENDS = OrderedDict(\n        [\n            (\"dulwich\", DulwichBackend),\n            (\"pygit2\", Pygit2Backend),\n            (\"gitpython\", GitPythonBackend),\n        ]\n    )\n    LOCAL_BRANCH_PREFIX = \"refs/heads/\"\n\n    def __init__(\n        self, *args, backends: Optional[Iterable[str]] = None, **kwargs\n    ):\n        self.ignored_paths: List[str] = []\n        self.files_to_track: Set[str] = set()\n\n        selected = backends if backends else self.DEFAULT_BACKENDS.keys()\n        self.backends = OrderedDict(\n            [\n                (name, self.DEFAULT_BACKENDS[name](*args, **kwargs))\n                for name in selected\n            ]\n        )\n\n        first_ = first(self.backends.values())\n        super().__init__(first_.root_dir)\n\n    @property\n    def dir(self):\n        return first(self.backends.values()).dir\n\n    @property\n    def gitpython(self):\n        return self.backends[\"gitpython\"]\n\n    @property\n    def dulwich(self):\n        return self.backends[\"dulwich\"]\n\n    @property\n    def pygit2(self):\n        return self.backends[\"pygit2\"]\n\n    @cached_property\n    def stash(self):\n        return Stash(self)\n\n    @classmethod\n    def clone(cls, url, to_path, **kwargs):\n        for _, backend in cls.DEFAULT_BACKENDS.items():\n            try:\n                backend.clone(url, to_path, **kwargs)\n                return Git(to_path)\n            except NotImplementedError:\n                pass\n        raise NoGitBackendError(\"clone\")\n\n    @classmethod\n    def is_sha(cls, rev):\n        for _, backend in cls.DEFAULT_BACKENDS.items():\n            try:\n                return backend.is_sha(rev)\n            except NotImplementedError:\n                pass\n        raise NoGitBackendError(\"is_sha\")\n\n    @staticmethod\n    def _get_git_dir(root_dir):\n        return os.path.join(root_dir, Git.GIT_DIR)\n\n    @property\n    def ignore_file(self):\n        return self.GITIGNORE", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git._get_gitignore_Git.ignore.self_ignored_paths_append": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git._get_gitignore_Git.ignore.self_ignored_paths_append", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 107, "end_line": 138, "span_ids": ["Git._get_gitignore", "Git.ignore"], "tokens": 231}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    def _get_gitignore(self, path):\n        ignore_file_dir = os.path.dirname(path)\n\n        assert os.path.isabs(path)\n        assert os.path.isabs(ignore_file_dir)\n\n        entry = relpath(path, ignore_file_dir).replace(os.sep, \"/\")\n        # NOTE: using '/' prefix to make path unambiguous\n        if len(entry) > 0 and entry[0] != \"/\":\n            entry = \"/\" + entry\n\n        gitignore = os.path.join(ignore_file_dir, self.GITIGNORE)\n\n        if not path_isin(os.path.realpath(gitignore), self.root_dir):\n            raise FileNotInRepoError(path)\n\n        return entry, gitignore\n\n    def ignore(self, path):\n        entry, gitignore = self._get_gitignore(path)\n\n        if self.is_ignored(path):\n            return\n\n        msg = \"Adding '{}' to '{}'.\".format(relpath(path), relpath(gitignore))\n        logger.debug(msg)\n\n        self._add_entry_to_gitignore(entry, gitignore)\n\n        self.track_file(relpath(gitignore))\n\n        self.ignored_paths.append(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git._add_entry_to_gitignore_Git._add_entry_to_gitignore.with_open_gitignore_a_.if_new_entry_not_in_uniqu.fobj_write_new_entry_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git._add_entry_to_gitignore_Git._add_entry_to_gitignore.with_open_gitignore_a_.if_new_entry_not_in_uniqu.fobj_write_new_entry_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 140, "end_line": 155, "span_ids": ["Git._add_entry_to_gitignore"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    def _add_entry_to_gitignore(self, entry, gitignore):\n        entry = GitWildMatchPattern.escape(entry)\n\n        with open(gitignore, \"a+\", encoding=\"utf-8\") as fobj:\n            unique_lines = set(fobj.readlines())\n            fobj.seek(0, os.SEEK_END)\n            if fobj.tell() == 0:\n                # Empty file\n                prefix = \"\"\n            else:\n                fobj.seek(fobj.tell() - 1, os.SEEK_SET)\n                last = fobj.read(1)\n                prefix = \"\" if last == \"\\n\" else \"\\n\"\n            new_entry = f\"{prefix}{entry}\\n\"\n            if new_entry not in unique_lines:\n                fobj.write(new_entry)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.ignore_remove_Git._install_merge_driver.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.ignore_remove_Git._install_merge_driver.None_1", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 157, "end_line": 194, "span_ids": ["Git.ignore_remove", "Git._install_hook", "Git._install_merge_driver"], "tokens": 259}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    def ignore_remove(self, path):\n        entry, gitignore = self._get_gitignore(path)\n\n        if not os.path.exists(gitignore):\n            return\n\n        with open(gitignore) as fobj:\n            lines = fobj.readlines()\n\n        filtered = list(filter(lambda x: x.strip() != entry.strip(), lines))\n\n        if not filtered:\n            os.unlink(gitignore)\n            return\n\n        with open(gitignore, \"w\") as fobj:\n            fobj.writelines(filtered)\n\n        self.track_file(relpath(gitignore))\n\n    def _install_hook(self, name):\n        hook = self._hook_path(name)\n        with open(hook, \"w+\") as fobj:\n            fobj.write(f\"#!/bin/sh\\nexec dvc git-hook {name} $@\\n\")\n\n        os.chmod(hook, 0o777)\n\n    def _install_merge_driver(self):\n        self.gitpython.repo.git.config(\"merge.dvc.name\", \"DVC merge driver\")\n        self.gitpython.repo.git.config(\n            \"merge.dvc.driver\",\n            (\n                \"dvc git-hook merge-driver \"\n                \"--ancestor %O \"\n                \"--our %A \"\n                \"--their %B \"\n            ),\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.cleanup_ignores_Git.branch_revs.partialmethod__backend_fu": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.cleanup_ignores_Git.branch_revs.partialmethod__backend_fu", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 230, "end_line": 336, "span_ids": ["Git.cleanup_ignores", "Git:11", "Git.reset_ignores", "Git.track_changed_files", "Git.track_file", "Git._verify_dvc_hooks", "Git.no_commits", "Git.has_rev", "Git._hook_path", "Git._backend_func", "Git.get_tree", "Git.belongs_to_scm", "Git.remind_to_track", "Git.close", "Git.reset_tracked_files", "Git._verify_hook", "Git._hooks_home"], "tokens": 828}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    def cleanup_ignores(self):\n        for path in self.ignored_paths:\n            self.ignore_remove(path)\n        self.reset_ignores()\n\n    def reset_ignores(self):\n        self.ignored_paths = []\n\n    def reset_tracked_files(self):\n        self.files_to_track = set()\n\n    def remind_to_track(self):\n        if not self.files_to_track:\n            return\n\n        files = \" \".join(shlex.quote(path) for path in self.files_to_track)\n\n        logger.info(\n            \"\\n\"\n            \"To track the changes with git, run:\\n\"\n            \"\\n\"\n            \"\\tgit add {files}\".format(files=files)\n        )\n\n    def track_changed_files(self):\n        if not self.files_to_track:\n            return\n\n        self.add(self.files_to_track)\n\n    def track_file(self, path: str):\n        self.files_to_track.add(path)\n\n    def belongs_to_scm(self, path):\n        basename = os.path.basename(path)\n        path_parts = os.path.normpath(path).split(os.path.sep)\n        return basename == self.ignore_file or Git.GIT_DIR in path_parts\n\n    def has_rev(self, rev):\n        try:\n            self.resolve_rev(rev)\n            return True\n        except RevError:\n            return False\n\n    def close(self):\n        for backend in self.backends.values():\n            backend.close()\n\n    @cached_property\n    def _hooks_home(self):\n        return os.path.join(self.root_dir, self.GIT_DIR, \"hooks\")\n\n    def _hook_path(self, name):\n        return os.path.join(self._hooks_home, name)\n\n    def _verify_hook(self, name):\n        if os.path.exists(self._hook_path(name)):\n            raise GitHookAlreadyExistsError(name)\n\n    def _verify_dvc_hooks(self):\n        self._verify_hook(\"post-checkout\")\n        self._verify_hook(\"pre-commit\")\n        self._verify_hook(\"pre-push\")\n\n    @property\n    def no_commits(self):\n        return not bool(self.get_ref(\"HEAD\"))\n\n    def _backend_func(self, name, *args, **kwargs):\n        for backend in self.backends.values():\n            try:\n                func = getattr(backend, name)\n                return func(*args, **kwargs)\n            except NotImplementedError:\n                pass\n        raise NoGitBackendError(name)\n\n    def get_tree(self, rev: str, **kwargs):\n        from dvc.tree.git import GitTree\n\n        from .objects import GitTrie\n\n        resolved = self.resolve_rev(rev)\n        tree_obj = self._backend_func(\"get_tree_obj\", rev=resolved)\n        trie = GitTrie(tree_obj, resolved)\n        return GitTree(self.root_dir, trie, **kwargs)\n\n    is_ignored = partialmethod(_backend_func, \"is_ignored\")\n    add = partialmethod(_backend_func, \"add\")\n    commit = partialmethod(_backend_func, \"commit\")\n    checkout = partialmethod(_backend_func, \"checkout\")\n    pull = partialmethod(_backend_func, \"pull\")\n    push = partialmethod(_backend_func, \"push\")\n    branch = partialmethod(_backend_func, \"branch\")\n    tag = partialmethod(_backend_func, \"tag\")\n    untracked_files = partialmethod(_backend_func, \"untracked_files\")\n    is_tracked = partialmethod(_backend_func, \"is_tracked\")\n    is_dirty = partialmethod(_backend_func, \"is_dirty\")\n    active_branch = partialmethod(_backend_func, \"active_branch\")\n    list_branches = partialmethod(_backend_func, \"list_branches\")\n    list_tags = partialmethod(_backend_func, \"list_tags\")\n    list_all_commits = partialmethod(_backend_func, \"list_all_commits\")\n    get_rev = partialmethod(_backend_func, \"get_rev\")\n    _resolve_rev = partialmethod(_backend_func, \"resolve_rev\")\n    resolve_commit = partialmethod(_backend_func, \"resolve_commit\")\n    branch_revs = partialmethod(_backend_func, \"branch_revs\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.resolve_rev_Git.resolve_rev.try_.except_RevError_.raise": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.resolve_rev_Git.resolve_rev.try_.except_RevError_.raise", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 355, "end_line": 369, "span_ids": ["Git.resolve_rev"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    def resolve_rev(self, rev: str) -> str:\n        from dvc.repo.experiments.utils import exp_refs_by_name\n\n        try:\n            return self._resolve_rev(rev)\n        except RevError:\n            # backends will only resolve git branch and tag names,\n            # if rev is not a sha it may be an abbreviated experiment name\n            if not self.is_sha(rev) and not rev.startswith(\"refs/\"):\n                ref_infos = list(exp_refs_by_name(self, rev))\n                if len(ref_infos) == 1:\n                    return self.get_ref(str(ref_infos[0]))\n                if len(ref_infos) > 1:\n                    raise RevError(f\"ambiguous Git revision '{rev}'\")\n            raise", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_os_BaseGitBackend.branch_revs.pass": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_os_BaseGitBackend.branch_revs.pass", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 132, "span_ids": ["BaseGitBackend.get_rev", "BaseGitBackend.pull", "BaseGitBackend.resolve_commit", "BaseGitBackend.checkout", "BaseGitBackend.is_ignored", "NoGitBackendError", "BaseGitBackend.clone", "BaseGitBackend.is_tracked", "BaseGitBackend.close", "BaseGitBackend.branch_revs", "BaseGitBackend.root_dir", "BaseGitBackend.get_tree_obj", "BaseGitBackend.active_branch", "BaseGitBackend.list_branches", "BaseGitBackend.push", "BaseGitBackend", "imports", "BaseGitBackend.branch", "BaseGitBackend.is_sha", "BaseGitBackend.list_tags", "BaseGitBackend.add", "NoGitBackendError.__init__", "BaseGitBackend.resolve_rev", "BaseGitBackend.is_dirty", "BaseGitBackend.untracked_files", "BaseGitBackend.tag", "BaseGitBackend.__init__", "BaseGitBackend.list_all_commits", "BaseGitBackend.commit", "BaseGitBackend.dir"], "tokens": 631}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom abc import ABC, abstractmethod\nfrom typing import Callable, Iterable, Mapping, Optional, Tuple\n\nfrom dvc.scm.base import SCMError\n\nfrom ..objects import GitObject\n\n\nclass NoGitBackendError(SCMError):\n    def __init__(self, func):\n        super().__init__(f\"No valid Git backend for '{func}'\")\n\n\nclass BaseGitBackend(ABC):\n    \"\"\"Base Git backend class.\"\"\"\n\n    @abstractmethod\n    def __init__(self, root_dir=os.curdir, search_parent_directories=True):\n        pass\n\n    def close(self):\n        pass\n\n    @abstractmethod\n    def is_ignored(self, path):\n        \"\"\"Return True if the specified path is gitignored.\"\"\"\n\n    @property\n    @abstractmethod\n    def root_dir(self) -> str:\n        pass\n\n    @staticmethod\n    @abstractmethod\n    def clone(\n        url: str,\n        to_path: str,\n        rev: Optional[str] = None,\n        shallow_branch: Optional[str] = None,\n    ):\n        pass\n\n    @staticmethod\n    @abstractmethod\n    def is_sha(rev: str) -> bool:\n        pass\n\n    @property\n    @abstractmethod\n    def dir(self) -> str:\n        pass\n\n    @abstractmethod\n    def add(self, paths: Iterable[str]):\n        pass\n\n    @abstractmethod\n    def commit(self, msg: str, no_verify: bool = False):\n        pass\n\n    @abstractmethod\n    def checkout(\n        self, branch: str, create_new: Optional[bool] = False, **kwargs,\n    ):\n        pass\n\n    @abstractmethod\n    def pull(self, **kwargs):\n        pass\n\n    @abstractmethod\n    def push(self):\n        pass\n\n    @abstractmethod\n    def branch(self, branch: str):\n        pass\n\n    @abstractmethod\n    def tag(self, tag: str):\n        pass\n\n    @abstractmethod\n    def untracked_files(self) -> Iterable[str]:\n        pass\n\n    @abstractmethod\n    def is_tracked(self, path: str) -> bool:\n        pass\n\n    @abstractmethod\n    def is_dirty(self, **kwargs) -> bool:\n        pass\n\n    @abstractmethod\n    def active_branch(self) -> str:\n        pass\n\n    @abstractmethod\n    def list_branches(self) -> Iterable[str]:\n        pass\n\n    @abstractmethod\n    def list_tags(self) -> Iterable[str]:\n        pass\n\n    @abstractmethod\n    def list_all_commits(self) -> Iterable[str]:\n        pass\n\n    @abstractmethod\n    def get_tree_obj(self, rev: str, **kwargs) -> GitObject:\n        pass\n\n    @abstractmethod\n    def get_rev(self) -> str:\n        pass\n\n    @abstractmethod\n    def resolve_rev(self, rev: str) -> str:\n        pass\n\n    @abstractmethod\n    def resolve_commit(self, rev: str) -> str:\n        pass\n\n    @abstractmethod\n    def branch_revs(\n        self, branch: str, end_rev: Optional[str] = None\n    ) -> Iterable[str]:\n        pass", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.set_ref_BaseGitBackend.set_ref._Set_the_specified_git_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.set_ref_BaseGitBackend.set_ref._Set_the_specified_git_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 134, "end_line": 151, "span_ids": ["BaseGitBackend.set_ref"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def set_ref(\n        self,\n        name: str,\n        new_ref: str,\n        old_ref: Optional[str] = None,\n        message: Optional[str] = None,\n        symbolic: Optional[bool] = False,\n    ):\n        \"\"\"Set the specified git ref.\n\n        Optional kwargs:\n            old_ref: If specified, ref will only be set if it currently equals\n                old_ref. Has no effect is symbolic is True.\n            message: Optional reflog message.\n            symbolic: If True, ref will be set as a symbolic ref to new_ref\n                rather than the dereferenced object.\n        \"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend._stash_iter_BaseGitBackend.reflog_delete._Delete_the_specified_r": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend._stash_iter_BaseGitBackend.reflog_delete._Delete_the_specified_r", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 239, "end_line": 260, "span_ids": ["BaseGitBackend._stash_push", "BaseGitBackend._stash_apply", "BaseGitBackend._stash_iter", "BaseGitBackend.reflog_delete"], "tokens": 158}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def _stash_iter(self, ref: str):\n        \"\"\"Iterate over stash commits in the specified ref.\"\"\"\n\n    @abstractmethod\n    def _stash_push(\n        self,\n        ref: str,\n        message: Optional[str] = None,\n        include_untracked: Optional[bool] = False,\n    ) -> Tuple[Optional[str], bool]:\n        \"\"\"Push a commit onto the specified stash.\"\"\"\n\n    @abstractmethod\n    def _stash_apply(self, rev: str):\n        \"\"\"Apply the specified stash revision.\"\"\"\n\n    @abstractmethod\n    def reflog_delete(\n        self, ref: str, updateref: bool = False, rewrite: bool = False\n    ):\n        \"\"\"Delete the specified reflog entry.\"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_fnmatch_DulwichObject.scandir.for_entry_in_tree_iterite.yield_DulwichObject_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_fnmatch_DulwichObject.scandir.for_entry_in_tree_iterite.yield_DulwichObject_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 52, "span_ids": ["DulwichObject.__init__", "imports", "DulwichObject.mode", "DulwichObject.name", "DulwichObject", "DulwichObject.open", "DulwichObject.scandir"], "tokens": 348}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import fnmatch\nimport locale\nimport logging\nimport os\nimport stat\nfrom io import BytesIO, StringIO\nfrom typing import Callable, Dict, Iterable, Mapping, Optional, Tuple\n\nfrom dvc.path_info import PathInfo\nfrom dvc.progress import Tqdm\nfrom dvc.scm.base import SCMError\nfrom dvc.utils import relpath\n\nfrom ..objects import GitObject\nfrom .base import BaseGitBackend\n\nlogger = logging.getLogger(__name__)\n\n\nclass DulwichObject(GitObject):\n    def __init__(self, repo, name, mode, sha):\n        self.repo = repo\n        self._name = name\n        self._mode = mode\n        self.sha = sha\n\n    def open(self, mode: str = \"r\", encoding: str = None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        # NOTE: we didn't load the object before as Dulwich will also try to\n        # load the contents of it into memory, which will slow down Trie\n        # building considerably.\n        obj = self.repo[self.sha]\n        data = obj.as_raw_string()\n        if mode == \"rb\":\n            return BytesIO(data)\n        return StringIO(data.decode(encoding))\n\n    @property\n    def name(self) -> str:\n        return self._name\n\n    @property\n    def mode(self) -> int:\n        return self._mode\n\n    def scandir(self) -> Iterable[\"DulwichObject\"]:\n        tree = self.repo[self.sha]\n        for entry in tree.iteritems():  # noqa: B301\n            yield DulwichObject(\n                self.repo, entry.path.decode(), entry.mode, entry.sha\n            )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend_DulwichBackend.__init__.self._stashes._": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend_DulwichBackend.__init__.self._stashes._", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 55, "end_line": 77, "span_ids": ["DulwichBackend", "DulwichBackend.__init__"], "tokens": 210}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):  # pylint:disable=abstract-method\n    \"\"\"Dulwich Git backend.\"\"\"\n\n    # Dulwich progress will return messages equivalent to git CLI,\n    # our pbars should just display the messages as formatted by dulwich\n    BAR_FMT_NOTOTAL = \"{desc}{bar:b}|{postfix[info]} [{elapsed}]\"\n\n    def __init__(  # pylint:disable=W0231\n        self, root_dir=os.curdir, search_parent_directories=True\n    ):\n        from dulwich.errors import NotGitRepository\n        from dulwich.repo import Repo\n\n        try:\n            if search_parent_directories:\n                self.repo = Repo.discover(start=root_dir)\n            else:\n                self.repo = Repo(root_dir)\n        except NotGitRepository as exc:\n            raise SCMError(f\"{root_dir} is not a git repository\") from exc\n\n        self._submodules: Dict[str, \"PathInfo\"] = self._find_submodules()\n        self._stashes: dict = {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._find_submodules_DulwichBackend.dir.return.self_repo_commondir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._find_submodules_DulwichBackend.dir.return.self_repo_commondir_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 79, "end_line": 116, "span_ids": ["DulwichBackend._find_submodules", "DulwichBackend.dir", "DulwichBackend.is_sha", "DulwichBackend.close", "DulwichBackend.root_dir", "DulwichBackend.clone"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def _find_submodules(self) -> Dict[str, \"PathInfo\"]:\n        \"\"\"Return dict mapping submodule names to submodule paths.\n\n        Submodule paths will be relative to Git repo root.\n        \"\"\"\n        from dulwich.config import ConfigFile, parse_submodules\n\n        submodules: Dict[str, \"PathInfo\"] = {}\n        config_path = os.path.join(self.root_dir, \".gitmodules\")\n        if os.path.isfile(config_path):\n            config = ConfigFile.from_path(config_path)\n            for path, _url, section in parse_submodules(config):\n                submodules[os.fsdecode(section)] = PathInfo(os.fsdecode(path))\n        return submodules\n\n    def close(self):\n        self.repo.close()\n\n    @property\n    def root_dir(self) -> str:\n        return self.repo.path\n\n    @staticmethod\n    def clone(\n        url: str,\n        to_path: str,\n        rev: Optional[str] = None,\n        shallow_branch: Optional[str] = None,\n    ):\n        raise NotImplementedError\n\n    @staticmethod\n    def is_sha(rev: str) -> bool:\n        raise NotImplementedError\n\n    @property\n    def dir(self) -> str:\n        return self.repo.commondir()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.add_DulwichBackend.add.for_fpath_in_files_.self_repo_stage_relpath_f": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.add_DulwichBackend.add.for_fpath_in_files_.self_repo_stage_relpath_f", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 118, "end_line": 146, "span_ids": ["DulwichBackend.add"], "tokens": 258}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def add(self, paths: Iterable[str]):\n        from dvc.utils.fs import walk_files\n\n        if isinstance(paths, str):\n            paths = [paths]\n\n        files = []\n        for path in paths:\n            if not os.path.isabs(path) and self._submodules:\n                # NOTE: If path is inside a submodule, Dulwich expects the\n                # staged paths to be relative to the submodule root (not the\n                # parent git repo root). We append path to root_dir here so\n                # that the result of relpath(path, root_dir) is actually the\n                # path relative to the submodule root.\n                path_info = PathInfo(path).relative_to(self.root_dir)\n                for sm_path in self._submodules.values():\n                    if path_info.isin(sm_path):\n                        path = os.path.join(\n                            self.root_dir, path_info.relative_to(sm_path)\n                        )\n                        break\n            if os.path.isdir(path):\n                files.extend(walk_files(path))\n            else:\n                files.append(path)\n\n        for fpath in files:\n            # NOTE: this doesn't check gitignore, same as GitPythonBackend.add\n            self.repo.stage(relpath(fpath, self.root_dir))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.commit_DulwichBackend.is_ignored.return.manager_is_ignored_relpat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.commit_DulwichBackend.is_ignored.return.manager_is_ignored_relpat", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 148, "end_line": 230, "span_ids": ["DulwichBackend.active_branch", "DulwichBackend.checkout", "DulwichBackend.resolve_rev", "DulwichBackend.pull", "DulwichBackend.list_all_commits", "DulwichBackend.untracked_files", "DulwichBackend.push", "DulwichBackend.is_tracked", "DulwichBackend.get_tree_obj", "DulwichBackend.get_rev", "DulwichBackend.branch", "DulwichBackend.tag", "DulwichBackend.is_ignored", "DulwichBackend.branch_revs", "DulwichBackend._get_stash", "DulwichBackend.resolve_commit", "DulwichBackend.list_branches", "DulwichBackend.list_tags", "DulwichBackend.commit", "DulwichBackend.is_dirty"], "tokens": 569}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def commit(self, msg: str, no_verify: bool = False):\n        from dulwich.errors import CommitError\n        from dulwich.porcelain import commit\n\n        try:\n            commit(self.root_dir, message=msg, no_verify=no_verify)\n        except CommitError as exc:\n            raise SCMError(\"Git commit failed\") from exc\n\n    def checkout(\n        self, branch: str, create_new: Optional[bool] = False, **kwargs,\n    ):\n        raise NotImplementedError\n\n    def pull(self, **kwargs):\n        raise NotImplementedError\n\n    def push(self):\n        raise NotImplementedError\n\n    def branch(self, branch: str):\n        raise NotImplementedError\n\n    def tag(self, tag: str):\n        raise NotImplementedError\n\n    def untracked_files(self) -> Iterable[str]:\n        _staged, _unstaged, untracked = self.status()\n        return untracked\n\n    def is_tracked(self, path: str) -> bool:\n        rel = PathInfo(path).relative_to(self.root_dir).as_posix().encode()\n        rel_dir = rel + b\"/\"\n        for path in self.repo.open_index():\n            if path == rel or path.startswith(rel_dir):\n                return True\n        return False\n\n    def is_dirty(self, **kwargs) -> bool:\n        raise NotImplementedError\n\n    def active_branch(self) -> str:\n        raise NotImplementedError\n\n    def list_branches(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def list_tags(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def list_all_commits(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def get_tree_obj(self, rev: str, **kwargs) -> DulwichObject:\n        from dulwich.objectspec import parse_tree\n\n        tree = parse_tree(self.repo, rev)\n        return DulwichObject(self.repo, \".\", stat.S_IFDIR, tree.id)\n\n    def get_rev(self) -> str:\n        raise NotImplementedError\n\n    def resolve_rev(self, rev: str) -> str:\n        raise NotImplementedError\n\n    def resolve_commit(self, rev: str) -> str:\n        raise NotImplementedError\n\n    def branch_revs(self, branch: str, end_rev: Optional[str] = None):\n        raise NotImplementedError\n\n    def _get_stash(self, ref: str):\n        from dulwich.stash import Stash as DulwichStash\n\n        if ref not in self._stashes:\n            self._stashes[ref] = DulwichStash(self.repo, ref=os.fsencode(ref))\n        return self._stashes[ref]\n\n    def is_ignored(self, path):\n        from dulwich import ignore\n\n        manager = ignore.IgnoreFilterManager.from_repo(self.repo)\n        return manager.is_ignored(relpath(path, self.root_dir))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.get_ref_DulwichBackend.iter_refs.for_key_in_self_repo_refs.if_base_.else_.yield_os_fsdecode_key_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.get_ref_DulwichBackend.iter_refs.for_key_in_self_repo_refs.if_base_.else_.yield_os_fsdecode_key_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 248, "end_line": 282, "span_ids": ["DulwichBackend.iter_refs", "DulwichBackend.remove_ref", "DulwichBackend.get_ref"], "tokens": 285}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def get_ref(self, name, follow: Optional[bool] = True) -> Optional[str]:\n        from dulwich.refs import parse_symref_value\n\n        name_b = os.fsencode(name)\n        if follow:\n            try:\n                ref = self.repo.refs[name_b]\n            except KeyError:\n                ref = None\n        else:\n            ref = self.repo.refs.read_ref(name_b)\n            try:\n                if ref:\n                    ref = parse_symref_value(ref)\n            except ValueError:\n                pass\n        if ref:\n            return os.fsdecode(ref)\n        return None\n\n    def remove_ref(self, name: str, old_ref: Optional[str] = None):\n        name_b = name.encode(\"utf-8\")\n        old_ref_b = old_ref.encode(\"utf-8\") if old_ref else None\n        if not self.repo.refs.remove_if_equals(name_b, old_ref_b):\n            raise SCMError(f\"Failed to remove '{name}'\")\n\n    def iter_refs(self, base: Optional[str] = None):\n        base_b = os.fsencode(base) if base else None\n        for key in self.repo.refs.keys(base=base_b):\n            if base:\n                if base.endswith(\"/\"):\n                    base = base[:-1]\n                yield \"/\".join([base, os.fsdecode(key)])\n            else:\n                yield os.fsdecode(key)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.iter_remote_refs_DulwichBackend.get_refs_containing.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.iter_remote_refs_DulwichBackend.get_refs_containing.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 284, "end_line": 306, "span_ids": ["DulwichBackend.iter_remote_refs", "DulwichBackend.get_refs_containing"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def iter_remote_refs(self, url: str, base: Optional[str] = None):\n        from dulwich.client import get_transport_and_path\n        from dulwich.porcelain import get_remote_repo\n\n        try:\n            _remote, location = get_remote_repo(self.repo, url)\n            client, path = get_transport_and_path(location)\n        except Exception as exc:\n            raise SCMError(\n                f\"'{url}' is not a valid Git remote or URL\"\n            ) from exc\n\n        if base:\n            yield from (\n                os.fsdecode(ref)\n                for ref in client.get_refs(path)\n                if ref.startswith(os.fsencode(base))\n            )\n        else:\n            yield from (os.fsdecode(ref) for ref in client.get_refs(path))\n\n    def get_refs_containing(self, rev: str, pattern: Optional[str] = None):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.push_refspec_DulwichBackend.push_refspec.try_.except_Exception_as_exc_.raise_SCMError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.push_refspec_DulwichBackend.push_refspec.try_.except_Exception_as_exc_.raise_SCMError_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 308, "end_line": 332, "span_ids": ["DulwichBackend.push_refspec"], "tokens": 192}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def push_refspec(\n        self,\n        url: str,\n        src: Optional[str],\n        dest: str,\n        force: bool = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        from dulwich.client import get_transport_and_path\n        from dulwich.errors import NotGitRepository, SendPackError\n        from dulwich.porcelain import (\n            DivergedBranches,\n            check_diverged,\n            get_remote_repo,\n        )\n\n        dest_refs, values = self._push_dest_refs(src, dest)\n\n        try:\n            _remote, location = get_remote_repo(self.repo, url)\n            client, path = get_transport_and_path(location)\n        except Exception as exc:\n            raise SCMError(\n                f\"'{url}' is not a valid Git remote or URL\"\n            ) from exc\n        # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.push_refspec.update_refs_DulwichBackend.push_refspec.update_refs.return.new_refs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.push_refspec.update_refs_DulwichBackend.push_refspec.update_refs.return.new_refs", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 334, "end_line": 352, "span_ids": ["DulwichBackend.push_refspec"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def push_refspec(\n        self,\n        url: str,\n        src: Optional[str],\n        dest: str,\n        force: bool = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        # ... other code\n\n        def update_refs(refs):\n            new_refs = {}\n            for ref, value in zip(dest_refs, values):\n                if ref in refs:\n                    local_sha = self.repo.refs[ref]\n                    remote_sha = refs[ref]\n                    try:\n                        check_diverged(self.repo, remote_sha, local_sha)\n                    except DivergedBranches:\n                        if not force:\n                            overwrite = False\n                            if on_diverged:\n                                overwrite = on_diverged(\n                                    os.fsdecode(ref), os.fsdecode(remote_sha),\n                                )\n                            if not overwrite:\n                                continue\n                new_refs[ref] = value\n            return new_refs\n        # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.push_refspec.None_1_DulwichBackend.push_refspec.None_1.except_NotGitRepository_.raise_SCMError_Git_faile": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.push_refspec.None_1_DulwichBackend.push_refspec.None_1.except_NotGitRepository_.raise_SCMError_Git_faile", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 354, "end_line": 372, "span_ids": ["DulwichBackend.push_refspec"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def push_refspec(\n        self,\n        url: str,\n        src: Optional[str],\n        dest: str,\n        force: bool = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        # ... other code\n\n        try:\n            with Tqdm(\n                desc=\"Pushing git refs\", bar_format=self.BAR_FMT_NOTOTAL\n            ) as pbar:\n\n                def progress(msg_b):\n                    msg = msg_b.decode(\"ascii\").strip()\n                    pbar.update_msg(msg)\n                    pbar.refresh()\n                    logger.trace(msg)\n\n                client.send_pack(\n                    path,\n                    update_refs,\n                    self.repo.object_store.generate_pack_data,\n                    progress=progress,\n                )\n        except (NotGitRepository, SendPackError) as exc:\n            raise SCMError(\"Git failed to push '{src}' to '{url}'\") from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._push_dest_refs_DulwichBackend._push_dest_refs.return.dest_refs_values": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._push_dest_refs_DulwichBackend._push_dest_refs.return.dest_refs_values", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 374, "end_line": 390, "span_ids": ["DulwichBackend._push_dest_refs"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def _push_dest_refs(\n        self, src: Optional[str], dest: str\n    ) -> Tuple[Iterable[bytes], Iterable[bytes]]:\n        from dulwich.objects import ZERO_SHA\n\n        if src is not None and src.endswith(\"/\"):\n            src_b = os.fsencode(src)\n            keys = self.repo.refs.subkeys(src_b)\n            values = [self.repo.refs[b\"\".join([src_b, key])] for key in keys]\n            dest_refs = [b\"\".join([os.fsencode(dest), key]) for key in keys]\n        else:\n            if src is None:\n                values = [ZERO_SHA]\n            else:\n                values = [self.repo.refs[os.fsencode(src)]]\n            dest_refs = [os.fsencode(dest)]\n        return dest_refs, values", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._stash_iter_DulwichBackend._stash_push.return.os_fsdecode_rev_True": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._stash_iter_DulwichBackend._stash_push.return.os_fsdecode_rev_True", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 465, "end_line": 485, "span_ids": ["DulwichBackend._stash_iter", "DulwichBackend._stash_push"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def _stash_iter(self, ref: str):\n        stash = self._get_stash(ref)\n        yield from stash.stashes()\n\n    def _stash_push(\n        self,\n        ref: str,\n        message: Optional[str] = None,\n        include_untracked: Optional[bool] = False,\n    ) -> Tuple[Optional[str], bool]:\n        from dvc.scm.git import Stash\n\n        if include_untracked or ref == Stash.DEFAULT_STASH:\n            # dulwich stash.push does not support include_untracked and does\n            # not touch working tree\n            raise NotImplementedError\n\n        stash = self._get_stash(ref)\n        message_b = message.encode(\"utf-8\") if message else None\n        rev = stash.push(message=message_b)\n        return os.fsdecode(rev), True", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._stash_apply_DulwichBackend.describe.return.None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend._stash_apply_DulwichBackend.describe.return.None", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 487, "end_line": 511, "span_ids": ["DulwichBackend._stash_apply", "DulwichBackend.describe", "DulwichBackend.reflog_delete"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def _stash_apply(self, rev: str):\n        raise NotImplementedError\n\n    def reflog_delete(\n        self, ref: str, updateref: bool = False, rewrite: bool = False\n    ):\n        raise NotImplementedError\n\n    def describe(\n        self,\n        rev: str,\n        base: Optional[str] = None,\n        match: Optional[str] = None,\n        exclude: Optional[str] = None,\n    ) -> Optional[str]:\n        if not base:\n            base = \"refs/tags\"\n        for ref in self.iter_refs(base=base):\n            if (match and not fnmatch.fnmatch(ref, match)) or (\n                exclude and fnmatch.fnmatch(ref, exclude)\n            ):\n                continue\n            if self.get_ref(ref, follow=False) == rev:\n                return ref\n        return None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_io_TqdmGit.code2desc.return.ops_get_op_code_OP_OP_M": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_io_TqdmGit.code2desc.return.ops_get_op_code_OP_OP_M", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 49, "span_ids": ["TqdmGit", "imports", "TqdmGit.update_git", "TqdmGit.code2desc"], "tokens": 367}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\nimport locale\nimport logging\nimport os\nfrom functools import partial\nfrom typing import Callable, Iterable, Mapping, Optional, Tuple\n\nfrom funcy import first\n\nfrom dvc.progress import Tqdm\nfrom dvc.scm.base import CloneError, RevError, SCMError\nfrom dvc.utils import fix_env, is_binary\n\nfrom ..objects import GitObject\nfrom .base import BaseGitBackend\n\nlogger = logging.getLogger(__name__)\n\n\nclass TqdmGit(Tqdm):\n    def update_git(self, op_code, cur_count, max_count=None, message=\"\"):\n        op_code = self.code2desc(op_code)\n        if op_code:\n            message = (op_code + \" | \" + message) if message else op_code\n        if message:\n            self.postfix[\"info\"] = f\" {message} | \"\n        self.update_to(cur_count, max_count)\n\n    @staticmethod\n    def code2desc(op_code):\n        from git import RootUpdateProgress as OP\n\n        ops = {\n            OP.COUNTING: \"Counting\",\n            OP.COMPRESSING: \"Compressing\",\n            OP.WRITING: \"Writing\",\n            OP.RECEIVING: \"Receiving\",\n            OP.RESOLVING: \"Resolving\",\n            OP.FINDING_SOURCES: \"Finding sources\",\n            OP.CHECKING_OUT: \"Checking out\",\n            OP.CLONE: \"Cloning\",\n            OP.FETCH: \"Fetching\",\n            OP.UPDWKTREE: \"Updating working tree\",\n            OP.REMOVE: \"Removing\",\n            OP.PATHCHANGE: \"Changing path\",\n            OP.URLCHANGE: \"Changing URL\",\n            OP.BRANCHCHANGE: \"Changing branch\",\n        }\n        return ops.get(op_code & OP.OP_MASK, \"\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonObject_GitPythonObject.scandir.for_obj_in_self_obj_.yield_GitPythonObject_obj": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonObject_GitPythonObject.scandir.for_obj_in_self_obj_.yield_GitPythonObject_obj", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 52, "end_line": 81, "span_ids": ["GitPythonObject.mode", "GitPythonObject.open", "GitPythonObject.__init__", "GitPythonObject", "GitPythonObject.name", "GitPythonObject.scandir"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonObject(GitObject):\n    def __init__(self, obj):\n        self.obj = obj\n\n    def open(self, mode: str = \"r\", encoding: str = None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        # GitPython's obj.data_stream is a fragile thing, it is better to\n        # read it immediately, also it needs to be to decoded if we follow\n        # the `open()` behavior (since data_stream.read() returns bytes,\n        # and `open` with default \"r\" mode returns str)\n        data = self.obj.data_stream.read()\n        if mode == \"rb\":\n            return io.BytesIO(data)\n        return io.StringIO(data.decode(encoding))\n\n    @property\n    def name(self) -> str:\n        # NOTE: `obj.name` is not always a basename. See [1] for more details.\n        #\n        # [1] https://github.com/iterative/dvc/issues/3481\n        return os.path.basename(self.obj.path)\n\n    @property\n    def mode(self) -> int:\n        return self.obj.mode\n\n    def scandir(self) -> Iterable[\"GitPythonObject\"]:\n        for obj in self.obj:\n            yield GitPythonObject(obj)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend_GitPythonBackend.root_dir.return.self_repo_working_tree_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend_GitPythonBackend.root_dir.return.self_repo_working_tree_di", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 84, "end_line": 119, "span_ids": ["GitPythonBackend.close", "GitPythonBackend", "GitPythonBackend.git", "GitPythonBackend.__init__", "GitPythonBackend.is_ignored", "GitPythonBackend.root_dir"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):  # pylint:disable=abstract-method\n    \"\"\"git-python Git backend.\"\"\"\n\n    def __init__(  # pylint:disable=W0231\n        self, root_dir=os.curdir, search_parent_directories=True\n    ):\n        import git\n        from git.exc import InvalidGitRepositoryError\n\n        try:\n            self.repo = git.Repo(\n                root_dir, search_parent_directories=search_parent_directories\n            )\n        except InvalidGitRepositoryError:\n            msg = \"{} is not a git repository\"\n            raise SCMError(msg.format(root_dir))\n\n        # NOTE: fixing LD_LIBRARY_PATH for binary built by PyInstaller.\n        # http://pyinstaller.readthedocs.io/en/stable/runtime-information.html\n        env = fix_env(None)\n        libpath = env.get(\"LD_LIBRARY_PATH\", None)\n        self.repo.git.update_environment(LD_LIBRARY_PATH=libpath)\n\n    def close(self):\n        self.repo.close()\n\n    @property\n    def git(self):\n        return self.repo.git\n\n    def is_ignored(self, path):\n        raise NotImplementedError\n\n    @property\n    def root_dir(self) -> str:\n        return self.repo.working_tree_dir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.clone_GitPythonBackend.clone.if_rev_.try_.except_git_exc_GitCommand.raise_RevError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.clone_GitPythonBackend.clone.if_rev_.try_.except_git_exc_GitCommand.raise_RevError_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 121, "end_line": 176, "span_ids": ["GitPythonBackend.clone"], "tokens": 476}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    @staticmethod\n    def clone(\n        url: str,\n        to_path: str,\n        rev: Optional[str] = None,\n        shallow_branch: Optional[str] = None,\n    ):\n        import git\n\n        ld_key = \"LD_LIBRARY_PATH\"\n\n        env = fix_env(None)\n        if is_binary() and ld_key not in env.keys():\n            # In fix_env, we delete LD_LIBRARY_PATH key if it was empty before\n            # PyInstaller modified it. GitPython, in git.Repo.clone_from, uses\n            # env to update its own internal state. When there is no key in\n            # env, this value is not updated and GitPython re-uses\n            # LD_LIBRARY_PATH that has been set by PyInstaller.\n            # See [1] for more info.\n            # [1] https://github.com/gitpython-developers/GitPython/issues/924\n            env[ld_key] = \"\"\n\n        try:\n            if shallow_branch is not None and os.path.exists(url):\n                # git disables --depth for local clones unless file:// url\n                # scheme is used\n                url = f\"file://{url}\"\n            with TqdmGit(desc=\"Cloning\", unit=\"obj\") as pbar:\n                clone_from = partial(\n                    git.Repo.clone_from,\n                    url,\n                    to_path,\n                    env=env,  # needed before we can fix it in __init__\n                    no_single_branch=True,\n                    progress=pbar.update_git,\n                )\n                if shallow_branch is None:\n                    tmp_repo = clone_from()\n                else:\n                    tmp_repo = clone_from(branch=shallow_branch, depth=1)\n            tmp_repo.close()\n        except git.exc.GitCommandError as exc:  # pylint: disable=no-member\n            raise CloneError(url, to_path) from exc\n\n        # NOTE: using our wrapper to make sure that env is fixed in __init__\n        repo = GitPythonBackend(to_path)\n\n        if rev:\n            try:\n                repo.checkout(rev)\n            except git.exc.GitCommandError as exc:  # pylint: disable=no-member\n                raise RevError(\n                    \"failed to access revision '{}' for repo '{}'\".format(\n                        rev, url\n                    )\n                ) from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.is_sha_GitPythonBackend.add.try_.except_AssertionError_.logger_exception_msg_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.is_sha_GitPythonBackend.add.try_.except_AssertionError_.logger_exception_msg_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 178, "end_line": 201, "span_ids": ["GitPythonBackend.is_sha", "GitPythonBackend.dir", "GitPythonBackend.add"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    @staticmethod\n    def is_sha(rev):\n        import git\n\n        return rev and git.Repo.re_hexsha_shortened.search(rev)\n\n    @property\n    def dir(self) -> str:\n        return self.repo.git_dir\n\n    def add(self, paths: Iterable[str]):\n        # NOTE: GitPython is not currently able to handle index version >= 3.\n        # See https://github.com/iterative/dvc/issues/610 for more details.\n        try:\n            self.repo.index.add(paths)\n        except AssertionError:\n            msg = (\n                \"failed to add '{}' to git. You can add those files \"\n                \"manually using `git add`. See \"\n                \"https://github.com/iterative/dvc/issues/610 for more \"\n                \"details.\".format(str(paths))\n            )\n\n            logger.exception(msg)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.commit_GitPythonBackend.get_rev.return.self_repo_rev_parse_HEAD": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.commit_GitPythonBackend.get_rev.return.self_repo_rev_parse_HEAD", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 203, "end_line": 274, "span_ids": ["GitPythonBackend.is_tracked", "GitPythonBackend.branch", "GitPythonBackend.is_dirty", "GitPythonBackend.list_all_commits", "GitPythonBackend.get_rev", "GitPythonBackend.checkout", "GitPythonBackend.pull", "GitPythonBackend.active_branch", "GitPythonBackend.tag", "GitPythonBackend.push", "GitPythonBackend.untracked_files", "GitPythonBackend.get_tree_obj", "GitPythonBackend.list_tags", "GitPythonBackend.list_branches", "GitPythonBackend.commit"], "tokens": 487}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def commit(self, msg: str, no_verify: bool = False):\n        from git.exc import HookExecutionError\n\n        try:\n            self.repo.index.commit(msg, skip_hooks=no_verify)\n        except HookExecutionError as exc:\n            raise SCMError(\"Git pre-commit hook failed\") from exc\n\n    def checkout(\n        self, branch: str, create_new: Optional[bool] = False, **kwargs\n    ):\n        if create_new:\n            self.repo.git.checkout(\"HEAD\", b=branch, **kwargs)\n        else:\n            self.repo.git.checkout(branch, **kwargs)\n\n    def pull(self, **kwargs):\n        infos = self.repo.remote().pull(**kwargs)\n        for info in infos:\n            if info.flags & info.ERROR:\n                raise SCMError(f\"pull failed: {info.note}\")\n\n    def push(self):\n        infos = self.repo.remote().push()\n        for info in infos:\n            if info.flags & info.ERROR:\n                raise SCMError(f\"push failed: {info.summary}\")\n\n    def branch(self, branch):\n        self.repo.git.branch(branch)\n\n    def tag(self, tag):\n        self.repo.git.tag(tag)\n\n    def untracked_files(self):\n        files = self.repo.untracked_files\n        return [os.path.join(self.repo.working_dir, fname) for fname in files]\n\n    def is_tracked(self, path):\n        return bool(self.repo.git.ls_files(path))\n\n    def is_dirty(self, **kwargs):\n        return self.repo.is_dirty(**kwargs)\n\n    def active_branch(self):\n        return self.repo.active_branch.name\n\n    def list_branches(self):\n        return [h.name for h in self.repo.heads]\n\n    def list_tags(self):\n        return [t.name for t in self.repo.tags]\n\n    def list_all_commits(self):\n        head = self.get_ref(\"HEAD\")\n        if not head:\n            # Empty repo\n            return []\n\n        return [\n            c.hexsha\n            for c in self.repo.iter_commits(\n                rev=head, branches=True, tags=True, remotes=True,\n            )\n        ]\n\n    def get_tree_obj(self, rev: str, **kwargs) -> GitPythonObject:\n        tree = self.repo.tree(rev)\n        return GitPythonObject(tree)\n\n    def get_rev(self):\n        return self.repo.rev_parse(\"HEAD\").hexsha", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.resolve_rev_GitPythonBackend.resolve_rev.raise_RevError_f_unknown_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.resolve_rev_GitPythonBackend.resolve_rev.raise_RevError_f_unknown_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 271, "end_line": 303, "span_ids": ["GitPythonBackend.resolve_rev"], "tokens": 260}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def resolve_rev(self, rev):\n        from contextlib import suppress\n\n        from git.exc import BadName, GitCommandError\n\n        def _resolve_rev(name):\n            with suppress(BadName, GitCommandError):\n                try:\n                    # Try python implementation of rev-parse first, it's faster\n                    return self.repo.rev_parse(name).hexsha\n                except NotImplementedError:\n                    # Fall back to `git rev-parse` for advanced features\n                    return self.repo.git.rev_parse(name)\n                except ValueError:\n                    raise RevError(f\"unknown Git revision '{name}'\")\n\n        # Resolve across local names\n        sha = _resolve_rev(rev)\n        if sha:\n            return sha\n\n        # Try all the remotes and if it resolves unambiguously then take it\n        if not self.is_sha(rev):\n            shas = {\n                _resolve_rev(f\"{remote.name}/{rev}\")\n                for remote in self.repo.remotes\n            } - {None}\n            if len(shas) > 1:\n                raise RevError(f\"ambiguous Git revision '{rev}'\")\n            if len(shas) == 1:\n                return shas.pop()\n\n        raise RevError(f\"unknown Git revision '{rev}'\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.resolve_commit_GitPythonBackend.branch_revs.while_commit_is_not_None_.if_commit_and_commit_hexs.return": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.resolve_commit_GitPythonBackend.branch_revs.while_commit_is_not_None_.if_commit_and_commit_hexs.return", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 305, "end_line": 331, "span_ids": ["GitPythonBackend.branch_revs", "GitPythonBackend.resolve_commit"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def resolve_commit(self, rev):\n        \"\"\"Return Commit object for the specified revision.\"\"\"\n        from git.exc import BadName, GitCommandError\n        from git.objects.tag import TagObject\n\n        try:\n            commit = self.repo.rev_parse(rev)\n        except (BadName, GitCommandError):\n            commit = None\n        if isinstance(commit, TagObject):\n            commit = commit.object\n        return commit\n\n    def branch_revs(\n        self, branch: str, end_rev: Optional[str] = None\n    ) -> Iterable[str]:\n        \"\"\"Iterate over revisions in a given branch (from newest to oldest).\n\n        If end_rev is set, iterator will stop when the specified revision is\n        reached.\n        \"\"\"\n        commit = self.resolve_commit(branch)\n        while commit is not None:\n            yield commit.hexsha\n            commit = first(commit.parents)\n            if commit and commit.hexsha == end_rev:\n                return", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.set_ref_GitPythonBackend.set_ref.try_.except_GitCommandError_as.raise_SCMError_f_Failed_t": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.set_ref_GitPythonBackend.set_ref.try_.except_GitCommandError_as.raise_SCMError_f_Failed_t", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 333, "end_line": 360, "span_ids": ["GitPythonBackend.set_ref"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def set_ref(\n        self,\n        name: str,\n        new_ref: str,\n        old_ref: Optional[str] = None,\n        message: Optional[str] = None,\n        symbolic: Optional[bool] = False,\n    ):\n        from git.exc import GitCommandError\n\n        if old_ref and self.get_ref(name) != old_ref:\n            raise SCMError(f\"Failed to set ref '{name}'\")\n        try:\n            if symbolic:\n                if message:\n                    self.git.symbolic_ref(name, new_ref, m=message)\n                else:\n                    self.git.symbolic_ref(name, new_ref)\n            else:\n                args = [name, new_ref]\n                if old_ref:\n                    args.append(old_ref)\n                if message:\n                    self.git.update_ref(*args, m=message, create_reflog=True)\n                else:\n                    self.git.update_ref(*args)\n        except GitCommandError as exc:\n            raise SCMError(f\"Failed to set ref '{name}'\") from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.get_ref_GitPythonBackend.get_ref.return.None": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.get_ref_GitPythonBackend.get_ref.return.None", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 362, "end_line": 392, "span_ids": ["GitPythonBackend.get_ref"], "tokens": 226}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def get_ref(\n        self, name: str, follow: Optional[bool] = True\n    ) -> Optional[str]:\n        from git.exc import GitCommandError\n\n        if name == \"HEAD\":\n            try:\n                return self.repo.head.commit.hexsha\n            except (GitCommandError, ValueError):\n                return None\n        elif name.startswith(\"refs/heads/\"):\n            name = name[11:]\n            if name in self.repo.heads:\n                return self.repo.heads[name].commit.hexsha\n        elif name.startswith(\"refs/tags/\"):\n            name = name[10:]\n            if name in self.repo.tags:\n                return self.repo.tags[name].commit.hexsha\n        else:\n            if not follow:\n                try:\n                    rev = self.git.symbolic_ref(name).strip()\n                    return rev if rev else None\n                except GitCommandError:\n                    pass\n            try:\n                rev = self.git.show_ref(name, hash=True).strip()\n                return rev if rev else None\n            except GitCommandError:\n                pass\n        return None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.remove_ref_GitPythonBackend._stash_iter.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend.remove_ref_GitPythonBackend._stash_iter.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 394, "end_line": 453, "span_ids": ["GitPythonBackend._stash_iter", "GitPythonBackend.fetch_refspecs", "GitPythonBackend.iter_refs", "GitPythonBackend.remove_ref", "GitPythonBackend.push_refspec", "GitPythonBackend.iter_remote_refs", "GitPythonBackend.get_refs_containing"], "tokens": 409}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def remove_ref(self, name: str, old_ref: Optional[str] = None):\n        from git.exc import GitCommandError\n\n        if old_ref and self.get_ref(name) != old_ref:\n            raise SCMError(f\"Failed to set ref '{name}'\")\n        try:\n            args = [name]\n            if old_ref:\n                args.append(old_ref)\n            self.git.update_ref(*args, d=True)\n        except GitCommandError as exc:\n            raise SCMError(f\"Failed to set ref '{name}'\") from exc\n\n    def iter_refs(self, base: Optional[str] = None):\n        from git import Reference\n\n        for ref in Reference.iter_items(self.repo, common_path=base):\n            yield ref.path\n\n    def iter_remote_refs(self, url: str, base: Optional[str] = None):\n        raise NotImplementedError\n\n    def get_refs_containing(self, rev: str, pattern: Optional[str] = None):\n        from git.exc import GitCommandError\n\n        try:\n            if pattern:\n                args = [pattern]\n            else:\n                args = []\n            for line in self.git.for_each_ref(\n                *args, contains=rev, format=r\"%(refname)\"\n            ).splitlines():\n                line = line.strip()\n                if line:\n                    yield line\n        except GitCommandError:\n            pass\n\n    def push_refspec(\n        self,\n        url: str,\n        src: Optional[str],\n        dest: str,\n        force: bool = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        raise NotImplementedError\n\n    def fetch_refspecs(\n        self,\n        url: str,\n        refspecs: Iterable[str],\n        force: Optional[bool] = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        raise NotImplementedError\n\n    def _stash_iter(self, ref: str):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend._stash_push_GitPythonBackend._stash_push.return.commit_hexsha_False": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend._stash_push_GitPythonBackend._stash_push.return.commit_hexsha_False", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 455, "end_line": 479, "span_ids": ["GitPythonBackend._stash_push"], "tokens": 244}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def _stash_push(\n        self,\n        ref: str,\n        message: Optional[str] = None,\n        include_untracked: Optional[bool] = False,\n    ) -> Tuple[Optional[str], bool]:\n        from dvc.scm.git import Stash\n\n        args = [\"push\"]\n        if message:\n            args.extend([\"-m\", message])\n        if include_untracked:\n            args.append(\"--include-untracked\")\n        self.git.stash(*args)\n        commit = self.resolve_commit(\"stash@{0}\")\n        if ref != Stash.DEFAULT_STASH:\n            # `git stash` CLI doesn't support using custom refspecs,\n            # so we push a commit onto refs/stash, make our refspec\n            # point to the new commit, then pop it from refs/stash\n            # `git stash create` is intended to be used for this kind of\n            # behavior but it doesn't support --include-untracked so we need to\n            # use push\n            self.set_ref(ref, commit.hexsha, message=commit.message)\n            self.git.stash(\"drop\")\n        return commit.hexsha, False", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend._stash_apply_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/gitpython.py_GitPythonBackend._stash_apply_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/gitpython.py", "file_name": "gitpython.py", "file_type": "text/x-python", "category": "implementation", "start_line": 486, "end_line": 524, "span_ids": ["GitPythonBackend.checkout_paths", "GitPythonBackend.reset", "GitPythonBackend.reflog_delete", "GitPythonBackend.describe", "GitPythonBackend.status", "GitPythonBackend.diff", "GitPythonBackend._stash_apply"], "tokens": 289}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitPythonBackend(BaseGitBackend):\n\n    def _stash_apply(self, rev: str):\n        self.git.stash(\"apply\", rev)\n\n    def reflog_delete(\n        self, ref: str, updateref: bool = False, rewrite: bool = False\n    ):\n        args = [\"delete\"]\n        if updateref:\n            args.append(\"--updateref\")\n        if rewrite:\n            args.append(\"--rewrite\")\n        args.append(ref)\n        self.git.reflog(*args)\n\n    def describe(\n        self,\n        rev: str,\n        base: Optional[str] = None,\n        match: Optional[str] = None,\n        exclude: Optional[str] = None,\n    ) -> Optional[str]:\n        raise NotImplementedError\n\n    def diff(self, rev_a: str, rev_b: str, binary=False) -> str:\n        raise NotImplementedError\n\n    def reset(self, hard: bool = False, paths: Iterable[str] = None):\n        self.repo.head.reset(index=True, working_tree=hard, paths=paths)\n\n    def checkout_paths(self, paths: Iterable[str], force: bool = False):\n        \"\"\"Checkout the specified paths from HEAD index.\"\"\"\n        if paths:\n            self.repo.index.checkout(paths=paths, force=force)\n\n    def status(\n        self, ignored: bool = False\n    ) -> Tuple[Mapping[str, Iterable[str]], Iterable[str], Iterable[str]]:\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/pygit2.py_locale_Pygit2Object.scandir.for_entry_in_self_obj_.yield_Pygit2Object_entry_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/pygit2.py_locale_Pygit2Object.scandir.for_entry_in_self_obj_.yield_Pygit2Object_entry_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/pygit2.py", "file_name": "pygit2.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 37, "span_ids": ["Pygit2Object.__init__", "Pygit2Object.open", "imports", "Pygit2Object", "Pygit2Object.scandir", "Pygit2Object.mode", "Pygit2Object.name"], "tokens": 216}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import locale\nimport logging\nimport os\nfrom io import BytesIO, StringIO\nfrom typing import Callable, Iterable, Mapping, Optional, Tuple\n\nfrom dvc.scm.base import SCMError\n\nfrom ..objects import GitObject\nfrom .base import BaseGitBackend\n\nlogger = logging.getLogger(__name__)\n\n\nclass Pygit2Object(GitObject):\n    def __init__(self, obj):\n        self.obj = obj\n\n    def open(self, mode: str = \"r\", encoding: str = None):\n        if not encoding:\n            encoding = locale.getpreferredencoding(False)\n        data = self.obj.read_raw()\n        if mode == \"rb\":\n            return BytesIO(data)\n        return StringIO(data.decode(encoding))\n\n    @property\n    def name(self) -> str:\n        return self.obj.name\n\n    @property\n    def mode(self):\n        return self.obj.filemode\n\n    def scandir(self) -> Iterable[\"Pygit2Object\"]:\n        for entry in self.obj:  # noqa: B301\n            yield Pygit2Object(entry)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/pygit2.py_Pygit2Backend_Pygit2Backend.push_refspec.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/pygit2.py_Pygit2Backend_Pygit2Backend.push_refspec.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/pygit2.py", "file_name": "pygit2.py", "file_type": "text/x-python", "category": "implementation", "start_line": 40, "end_line": 182, "span_ids": ["Pygit2Backend.close", "Pygit2Backend.is_dirty", "Pygit2Backend.get_rev", "Pygit2Backend.list_all_commits", "Pygit2Backend.__init__", "Pygit2Backend.resolve_commit", "Pygit2Backend.set_ref", "Pygit2Backend._get_stash", "Pygit2Backend.remove_ref", "Pygit2Backend.get_refs_containing", "Pygit2Backend.resolve_rev", "Pygit2Backend.is_sha", "Pygit2Backend.is_ignored", "Pygit2Backend.list_branches", "Pygit2Backend.root_dir", "Pygit2Backend", "Pygit2Backend.untracked_files", "Pygit2Backend.clone", "Pygit2Backend.get_tree_obj", "Pygit2Backend.get_ref", "Pygit2Backend.tag", "Pygit2Backend.is_tracked", "Pygit2Backend.push_refspec", "Pygit2Backend.branch_revs", "Pygit2Backend.iter_refs", "Pygit2Backend.add", "Pygit2Backend.dir", "Pygit2Backend.commit", "Pygit2Backend.pull", "Pygit2Backend.list_tags", "Pygit2Backend.checkout", "Pygit2Backend.active_branch", "Pygit2Backend.branch", "Pygit2Backend.push"], "tokens": 822}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Pygit2Backend(BaseGitBackend):  # pylint:disable=abstract-method\n    def __init__(  # pylint:disable=W0231\n        self, root_dir=os.curdir, search_parent_directories=True\n    ):\n        import pygit2\n\n        if search_parent_directories:\n            ceiling_dirs = \"\"\n        else:\n            ceiling_dirs = os.path.abspath(root_dir)\n\n        # NOTE: discover_repository will return path/.git/\n        path = pygit2.discover_repository(  # pylint:disable=no-member\n            root_dir, True, ceiling_dirs\n        )\n        if not path:\n            raise SCMError(f\"{root_dir} is not a git repository\")\n\n        self.repo = pygit2.Repository(path)\n\n        self._stashes: dict = {}\n\n    def close(self):\n        self.repo.free()\n\n    @property\n    def root_dir(self) -> str:\n        return self.repo.workdir\n\n    @staticmethod\n    def clone(\n        url: str,\n        to_path: str,\n        rev: Optional[str] = None,\n        shallow_branch: Optional[str] = None,\n    ):\n        raise NotImplementedError\n\n    @staticmethod\n    def is_sha(rev: str) -> bool:\n        raise NotImplementedError\n\n    @property\n    def dir(self) -> str:\n        raise NotImplementedError\n\n    def add(self, paths: Iterable[str]):\n        raise NotImplementedError\n\n    def commit(self, msg: str, no_verify: bool = False):\n        raise NotImplementedError\n\n    def checkout(\n        self, branch: str, create_new: Optional[bool] = False, **kwargs,\n    ):\n        raise NotImplementedError\n\n    def pull(self, **kwargs):\n        raise NotImplementedError\n\n    def push(self):\n        raise NotImplementedError\n\n    def branch(self, branch: str):\n        raise NotImplementedError\n\n    def tag(self, tag: str):\n        raise NotImplementedError\n\n    def untracked_files(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def is_tracked(self, path: str) -> bool:\n        raise NotImplementedError\n\n    def is_dirty(self, **kwargs) -> bool:\n        raise NotImplementedError\n\n    def active_branch(self) -> str:\n        raise NotImplementedError\n\n    def list_branches(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def list_tags(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def list_all_commits(self) -> Iterable[str]:\n        raise NotImplementedError\n\n    def get_tree_obj(self, rev: str, **kwargs) -> Pygit2Object:\n        tree = self.repo[rev].tree\n        return Pygit2Object(tree)\n\n    def get_rev(self) -> str:\n        raise NotImplementedError\n\n    def resolve_rev(self, rev: str) -> str:\n        raise NotImplementedError\n\n    def resolve_commit(self, rev: str) -> str:\n        raise NotImplementedError\n\n    def branch_revs(self, branch: str, end_rev: Optional[str] = None):\n        raise NotImplementedError\n\n    def _get_stash(self, ref: str):\n        raise NotImplementedError\n\n    def is_ignored(self, path):\n        raise NotImplementedError\n\n    def set_ref(\n        self,\n        name: str,\n        new_ref: str,\n        old_ref: Optional[str] = None,\n        message: Optional[str] = None,\n        symbolic: Optional[bool] = False,\n    ):\n        raise NotImplementedError\n\n    def get_ref(self, name, follow: Optional[bool] = True) -> Optional[str]:\n        raise NotImplementedError\n\n    def remove_ref(self, name: str, old_ref: Optional[str] = None):\n        raise NotImplementedError\n\n    def iter_refs(self, base: Optional[str] = None):\n        raise NotImplementedError\n\n    def get_refs_containing(self, rev: str, pattern: Optional[str] = None):\n        raise NotImplementedError\n\n    def push_refspec(\n        self,\n        url: str,\n        src: Optional[str],\n        dest: str,\n        force: bool = False,\n        on_diverged: Optional[Callable[[str, str], bool]] = None,\n    ):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/pygit2.py_Pygit2Backend.fetch_refspecs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/pygit2.py_Pygit2Backend.fetch_refspecs_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/pygit2.py", "file_name": "pygit2.py", "file_type": "text/x-python", "category": "implementation", "start_line": 184, "end_line": 237, "span_ids": ["Pygit2Backend._stash_apply", "Pygit2Backend.reflog_delete", "Pygit2Backend._stash_iter", "Pygit2Backend.reset", "Pygit2Backend.describe", "Pygit2Backend.iter_remote_refs", "Pygit2Backend.checkout_paths", "Pygit2Backend.diff", "Pygit2Backend._stash_push", "Pygit2Backend.status", "Pygit2Backend.fetch_refspecs"], "tokens": 350}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Pygit2Backend(BaseGitBackend):\n\n    def fetch_refspecs(\n        self,\n        url: str,\n        refspecs: Iterable[str],\n        force: Optional[bool] = False,\n        on_diverged: Optional[Callable[[bytes, bytes], bool]] = None,\n    ):\n        raise NotImplementedError\n\n    def _stash_iter(self, ref: str):\n        raise NotImplementedError\n\n    def _stash_push(\n        self,\n        ref: str,\n        message: Optional[str] = None,\n        include_untracked: Optional[bool] = False,\n    ) -> Tuple[Optional[str], bool]:\n        raise NotImplementedError\n\n    def _stash_apply(self, rev: str):\n        raise NotImplementedError\n\n    def reflog_delete(\n        self, ref: str, updateref: bool = False, rewrite: bool = False\n    ):\n        raise NotImplementedError\n\n    def describe(\n        self,\n        rev: str,\n        base: Optional[str] = None,\n        match: Optional[str] = None,\n        exclude: Optional[str] = None,\n    ) -> Optional[str]:\n        raise NotImplementedError\n\n    def diff(self, rev_a: str, rev_b: str, binary=False) -> str:\n        raise NotImplementedError\n\n    def reset(self, hard: bool = False, paths: Iterable[str] = None):\n        raise NotImplementedError\n\n    def checkout_paths(self, paths: Iterable[str], force: bool = False):\n        raise NotImplementedError\n\n    def iter_remote_refs(self, url: str, base: Optional[str] = None):\n        raise NotImplementedError\n\n    def status(\n        self, ignored: bool = False\n    ) -> Tuple[Mapping[str, Iterable[str]], Iterable[str], Iterable[str]]:\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/objects.py_os_GitObject.issubmodule.return.S_ISGITLINK_self_mode_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/objects.py_os_GitObject.issubmodule.return.S_ISGITLINK_self_mode_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/objects.py", "file_name": "objects.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 44, "span_ids": ["GitObject.isdir", "GitObject.isfile", "GitObject.open", "imports", "S_ISGITLINK", "GitObject.mode", "GitObject.scandir", "GitObject.name", "GitObject.issubmodule", "GitObject"], "tokens": 220}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport stat\nfrom abc import ABC, abstractmethod\nfrom typing import Iterable, Optional\n\nfrom pygtrie import Trie\n\nS_IFGITLINK = 0o160000\n\n\ndef S_ISGITLINK(m: int) -> bool:\n    return stat.S_IFMT(m) == S_IFGITLINK\n\n\nclass GitObject(ABC):\n    @abstractmethod\n    def open(self, mode: str = \"r\", encoding: str = None):\n        pass\n\n    @property\n    @abstractmethod\n    def name(self) -> str:\n        pass\n\n    @property\n    @abstractmethod\n    def mode(self) -> int:\n        pass\n\n    @abstractmethod\n    def scandir(self) -> Iterable[\"GitObject\"]:\n        pass\n\n    @property\n    def isfile(self) -> bool:\n        return stat.S_ISREG(self.mode)\n\n    @property\n    def isdir(self) -> bool:\n        return stat.S_ISDIR(self.mode)\n\n    @property\n    def issubmodule(self) -> bool:\n        return S_ISGITLINK(self.mode)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/objects.py_GitTrie_GitTrie.isfile.return.obj_isfile": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/objects.py_GitTrie_GitTrie.isfile.return.obj_isfile", "embedding": null, "metadata": {"file_path": "dvc/scm/git/objects.py", "file_name": "objects.py", "file_type": "text/x-python", "category": "implementation", "start_line": 47, "end_line": 92, "span_ids": ["GitTrie.isdir", "GitTrie.__init__", "GitTrie.open", "GitTrie.isfile", "GitTrie", "GitTrie.exists", "GitTrie._build"], "tokens": 275}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTrie:\n    def __init__(self, tree: GitObject, rev: str):\n        self.tree = tree\n        self.rev = rev\n        self.trie = Trie()\n\n        self.trie[()] = tree\n        self._build(tree, ())\n\n    def _build(self, tree: GitObject, path: tuple):\n        for obj in tree.scandir():\n            obj_path = path + (obj.name,)\n            self.trie[obj_path] = obj\n\n            if obj.isdir:\n                self._build(obj, obj_path)\n\n    def open(\n        self,\n        key: tuple,\n        mode: Optional[str] = \"r\",\n        encoding: Optional[str] = None,\n    ):\n        obj = self.trie[key]\n        if obj.isdir:\n            raise IsADirectoryError\n\n        return obj.open(mode=mode, encoding=encoding)\n\n    def exists(self, key: tuple) -> bool:\n        return bool(self.trie.has_node(key))\n\n    def isdir(self, key: tuple) -> bool:\n        try:\n            obj = self.trie[key]\n        except KeyError:\n            return False\n        return obj.isdir\n\n    def isfile(self, key: tuple) -> bool:\n        try:\n            obj = self.trie[key]\n        except KeyError:\n            return False\n\n        return obj.isfile", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/objects.py_GitTrie.walk_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/objects.py_GitTrie.walk_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/objects.py", "file_name": "objects.py", "file_type": "text/x-python", "category": "implementation", "start_line": 94, "end_line": 121, "span_ids": ["GitTrie.stat", "GitTrie.walk"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTrie:\n\n    def walk(self, top: tuple, topdown: Optional[bool] = True):\n        dirs = []\n        nondirs = []\n\n        def node_factory(_, path, children, obj):\n            if path == top:\n                assert obj.isdir\n                list(filter(None, children))\n            elif obj.isdir:\n                dirs.append(obj.name)\n            else:\n                nondirs.append(obj.name)\n\n        self.trie.traverse(node_factory, prefix=top)\n\n        if topdown:\n            yield top, dirs, nondirs\n\n        for dname in dirs:\n            yield from self.walk(top + (dname,), topdown=topdown)\n\n        if not topdown:\n            yield top, dirs, nondirs\n\n    def stat(self, key: tuple) -> os.stat_result:\n        obj = self.trie[key]\n        return os.stat_result((obj.mode, 0, 0, 0, 0, 0, 0, 0, 0, 0))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_create_stage_create_stage.return.stage": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_create_stage_create_stage.return.stage", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 72, "end_line": 91, "span_ids": ["create_stage"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def create_stage(cls, repo, path, external=False, **kwargs):\n    from dvc.dvcfile import check_dvc_filename\n\n    wdir = os.path.abspath(kwargs.get(\"wdir\", None) or os.curdir)\n    path = os.path.abspath(path)\n    check_dvc_filename(path)\n    check_stage_path(repo, wdir, is_wdir=kwargs.get(\"wdir\"))\n    check_stage_path(repo, os.path.dirname(path))\n\n    stage = loads_from(cls, repo, path, wdir, kwargs)\n    fill_stage_outputs(stage, **kwargs)\n    if not external:\n        check_no_externals(stage)\n    fill_stage_dependencies(\n        stage, **project(kwargs, [\"deps\", \"erepo\", \"params\"])\n    )\n    check_circular_dependency(stage)\n    check_duplicated_arguments(stage)\n\n    return stage", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_restore_meta_restore_meta.for_out_in_stage_outs_.out.desc.old_desc_get_out_def_path": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/__init__.py_restore_meta_restore_meta.for_out_in_stage_outs_.out.desc.old_desc_get_out_def_path", "embedding": null, "metadata": {"file_path": "dvc/stage/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 94, "end_line": 115, "span_ids": ["restore_meta"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def restore_meta(stage):\n    from .exceptions import StageNotFound\n\n    if not stage.dvcfile.exists():\n        return\n\n    try:\n        old = stage.reload()\n    except StageNotFound:\n        return\n\n    # will be used to restore comments later\n    # noqa, pylint: disable=protected-access\n    stage._stage_text = old._stage_text\n\n    stage.meta = old.meta\n    stage.desc = old.desc\n\n    old_desc = {out.def_path: out.desc for out in old.outs}\n\n    for out in stage.outs:\n        out.desc = old_desc.get(out.def_path, None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader_StageLoader.lockfile_data.return.self__lockfile_data": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader_StageLoader.lockfile_data.return.self__lockfile_data", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 21, "end_line": 38, "span_ids": ["StageLoader.lockfile_data", "StageLoader", "StageLoader.resolver", "StageLoader.__init__"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoader(Mapping):\n    def __init__(self, dvcfile, data, lockfile_data=None):\n        self.dvcfile = dvcfile\n        self.data = data or {}\n        self.stages_data = self.data.get(\"stages\", {})\n        self.repo = self.dvcfile.repo\n        self._lockfile_data = lockfile_data or {}\n\n    @cached_property\n    def resolver(self):\n        wdir = PathInfo(self.dvcfile.path).parent\n        return DataResolver(self.repo, wdir, self.data)\n\n    @cached_property\n    def lockfile_data(self):\n        if not self._lockfile_data:\n            logger.debug(\"Lockfile for '%s' not found\", self.dvcfile.relpath)\n        return self._lockfile_data", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader.load_stage_StageLoader.lockfile_needs_update.logger_debug_Lockfile_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/loader.py_StageLoader.load_stage_StageLoader.lockfile_needs_update.logger_debug_Lockfile_", "embedding": null, "metadata": {"file_path": "dvc/stage/loader.py", "file_name": "loader.py", "file_type": "text/x-python", "category": "implementation", "start_line": 67, "end_line": 104, "span_ids": ["StageLoader.lockfile_needs_update", "StageLoader.load_stage"], "tokens": 342}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class StageLoader(Mapping):\n\n    @classmethod\n    def load_stage(cls, dvcfile, name, stage_data, lock_data=None):\n        assert all([name, dvcfile, dvcfile.repo, dvcfile.path])\n        assert stage_data and isinstance(stage_data, dict)\n\n        path, wdir = resolve_paths(\n            dvcfile.path, stage_data.get(Stage.PARAM_WDIR)\n        )\n        stage = loads_from(PipelineStage, dvcfile.repo, path, wdir, stage_data)\n        stage.name = name\n        stage.desc = stage_data.get(Stage.PARAM_DESC)\n        stage.meta = stage_data.get(Stage.PARAM_META)\n\n        deps = project(stage_data, [stage.PARAM_DEPS, stage.PARAM_PARAMS])\n        fill_stage_dependencies(stage, **deps)\n\n        outs = project(\n            stage_data,\n            [stage.PARAM_OUTS, stage.PARAM_METRICS, stage.PARAM_PLOTS],\n        )\n        stage.outs = lcat(\n            output.load_from_pipeline(stage, data, typ=key)\n            for key, data in outs.items()\n        )\n\n        if lock_data:\n            stage.cmd_changed = lock_data.get(Stage.PARAM_CMD) != stage.cmd\n\n        cls.fill_from_lock(stage, lock_data)\n        return stage\n\n    @once\n    def lockfile_needs_update(self):\n        # if lockfile does not have all of the entries that dvc.yaml says it\n        # should have, provide a debug message once\n        # pylint: disable=protected-access\n        lockfile = self.dvcfile._lockfile.relpath\n        logger.debug(\"Lockfile '%s' needs to be updated.\", lockfile)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_logging__make_cmd.return._executable_opts_get_n": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_logging__make_cmd.return._executable_opts_get_n", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["CheckpointKilledError", "imports", "_make_cmd"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport signal\nimport subprocess\nimport threading\nfrom contextlib import contextmanager\n\nfrom dvc.env import DVC_CHECKPOINT, DVC_ROOT\nfrom dvc.utils import fix_env\n\nfrom .decorators import relock_repo, unlocked_repo\nfrom .exceptions import StageCmdFailedError\n\nlogger = logging.getLogger(__name__)\n\n\nCHECKPOINT_SIGNAL_FILE = \"DVC_CHECKPOINT\"\n\n\nclass CheckpointKilledError(StageCmdFailedError):\n    pass\n\n\ndef _make_cmd(executable, cmd):\n    if executable is None:\n        return cmd\n    opts = {\"zsh\": [\"--no-rcs\"], \"bash\": [\"--noprofile\", \"--norc\"]}\n    name = os.path.basename(executable).lower()\n    return [executable] + opts.get(name, []) + [\"-c\", cmd]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_warn_if_fish__enforce_cmd_list.return.cmd_if_isinstance_cmd_li": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_warn_if_fish__enforce_cmd_list.return.cmd_if_isinstance_cmd_li", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 32, "end_line": 50, "span_ids": ["_enforce_cmd_list", "warn_if_fish"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def warn_if_fish(executable):\n    if (\n        executable is None\n        or os.path.basename(os.path.realpath(executable)) != \"fish\"\n    ):\n        return\n\n    logger.warning(\n        \"DVC detected that you are using fish as your default \"\n        \"shell. Be aware that it might cause problems by overwriting \"\n        \"your current environment variables with values defined \"\n        \"in '.fishrc', which might affect your command. See \"\n        \"https://github.com/iterative/dvc/issues/1307. \"\n    )\n\n\ndef _enforce_cmd_list(cmd):\n    assert cmd\n    return cmd if isinstance(cmd, list) else [cmd]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_prepare_kwargs_prepare_kwargs.return.kwargs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_prepare_kwargs_prepare_kwargs.return.kwargs", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 53, "end_line": 73, "span_ids": ["prepare_kwargs"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def prepare_kwargs(stage, checkpoint_func=None):\n    kwargs = {\"cwd\": stage.wdir, \"env\": fix_env(None), \"close_fds\": True}\n    if checkpoint_func:\n        # indicate that checkpoint cmd is being run inside DVC\n        kwargs[\"env\"].update(_checkpoint_env(stage))\n\n    # NOTE: when you specify `shell=True`, `Popen` [1] will default to\n    # `/bin/sh` on *nix and will add [\"/bin/sh\", \"-c\"] to your command.\n    # But we actually want to run the same shell that we are running\n    # from right now, which is usually determined by the `SHELL` env\n    # var. So instead, we compose our command on our own, making sure\n    # to include special flags to prevent shell from reading any\n    # configs and modifying env, which may change the behavior or the\n    # command we are running. See [2] for more info.\n    #\n    # [1] https://github.com/python/cpython/blob/3.7/Lib/subprocess.py\n    #                                                            #L1426\n    # [2] https://github.com/iterative/dvc/issues/2506\n    #                                           #issuecomment-535396799\n    kwargs[\"shell\"] = True if os.name == \"nt\" else False\n    return kwargs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_display_command__run.if_retcode_0_.raise_StageCmdFailedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_display_command__run.if_retcode_0_.raise_StageCmdFailedError", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 76, "end_line": 110, "span_ids": ["_run", "display_command", "get_executable"], "tokens": 237}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def display_command(cmd):\n    logger.info(\"%s %s\", \">\", cmd)\n\n\ndef get_executable():\n    return (os.getenv(\"SHELL\") or \"/bin/sh\") if os.name != \"nt\" else None\n\n\ndef _run(stage, executable, cmd, checkpoint_func, **kwargs):\n    main_thread = isinstance(\n        threading.current_thread(),\n        threading._MainThread,  # pylint: disable=protected-access\n    )\n\n    exec_cmd = _make_cmd(executable, cmd)\n    old_handler = None\n    p = None\n\n    try:\n        p = subprocess.Popen(exec_cmd, **kwargs)\n        if main_thread:\n            old_handler = signal.signal(signal.SIGINT, signal.SIG_IGN)\n\n        killed = threading.Event()\n        with checkpoint_monitor(stage, checkpoint_func, p, killed):\n            p.communicate()\n    finally:\n        if old_handler:\n            signal.signal(signal.SIGINT, old_handler)\n\n    retcode = None if not p else p.returncode\n    if retcode != 0:\n        if killed.is_set():\n            raise CheckpointKilledError(cmd, retcode)\n        raise StageCmdFailedError(cmd, retcode)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_cmd_run_cmd_run.for_cmd_in_commands_._run_stage_executable_c": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_cmd_run_cmd_run.for_cmd_in_commands_._run_stage_executable_c", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 113, "end_line": 131, "span_ids": ["cmd_run"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def cmd_run(stage, dry=False, checkpoint_func=None):\n    logger.info(\n        \"Running %s\" \"stage '%s':\",\n        \"callback \" if stage.is_callback else \"\",\n        stage.addressing,\n    )\n    commands = _enforce_cmd_list(stage.cmd)\n    kwargs = prepare_kwargs(stage, checkpoint_func=checkpoint_func)\n    executable = get_executable()\n\n    if not dry:\n        warn_if_fish(executable)\n\n    for cmd in commands:\n        display_command(cmd)\n        if dry:\n            continue\n\n        _run(stage, executable, cmd, checkpoint_func=checkpoint_func, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_run_stage__checkpoint_env.return._DVC_CHECKPOINT_1_DVC": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_run_stage__checkpoint_env.return._DVC_CHECKPOINT_1_DVC", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 134, "end_line": 149, "span_ids": ["_checkpoint_env", "run_stage"], "tokens": 119}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def run_stage(stage, dry=False, force=False, checkpoint_func=None, **kwargs):\n    if not (dry or force or checkpoint_func):\n        from .cache import RunCacheNotFoundError\n\n        try:\n            stage.repo.stage_cache.restore(stage, **kwargs)\n            return\n        except RunCacheNotFoundError:\n            stage.save_deps()\n\n    run = cmd_run if dry else unlocked_repo(cmd_run)\n    run(stage, dry=dry, checkpoint_func=checkpoint_func)\n\n\ndef _checkpoint_env(stage):\n    return {DVC_CHECKPOINT: \"1\", DVC_ROOT: stage.repo.root_dir}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_checkpoint_monitor_checkpoint_monitor.try_.finally_.monitor_thread_join_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/stage/run.py_checkpoint_monitor_checkpoint_monitor.try_.finally_.monitor_thread_join_", "embedding": null, "metadata": {"file_path": "dvc/stage/run.py", "file_name": "run.py", "file_type": "text/x-python", "category": "implementation", "start_line": 152, "end_line": 174, "span_ids": ["checkpoint_monitor"], "tokens": 116}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@contextmanager\ndef checkpoint_monitor(stage, callback_func, proc, killed):\n    if not callback_func:\n        yield None\n        return\n\n    logger.debug(\n        \"Monitoring checkpoint stage '%s' with cmd process '%d'\",\n        stage,\n        proc.pid,\n    )\n    done = threading.Event()\n    monitor_thread = threading.Thread(\n        target=_checkpoint_run,\n        args=(stage, callback_func, done, proc, killed),\n    )\n\n    try:\n        monitor_thread.start()\n        yield monitor_thread\n    finally:\n        done.set()\n        monitor_thread.join()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_errno_GitTree.dvcignore.return.cls_self_root_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_errno_GitTree.dvcignore.return.cls_self_root_", "embedding": null, "metadata": {"file_path": "dvc/tree/git.py", "file_name": "git.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 48, "span_ids": ["GitTree.rev", "imports", "GitTree", "GitTree.__init__", "GitTree.dvcignore", "GitTree._get_key", "GitTree.tree_root"], "tokens": 325}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import errno\nimport os\n\nfrom funcy import cached_property\n\nfrom dvc.tree.base import BaseTree\nfrom dvc.utils import is_exec, relpath\n\n\nclass GitTree(BaseTree):  # pylint:disable=abstract-method\n    \"\"\"Proxies the repo file access methods to Git objects\"\"\"\n\n    def __init__(\n        self, root_dir, trie, use_dvcignore=False, dvcignore_root=None\n    ):\n        super().__init__(None, {})\n        self._tree_root = root_dir\n        self.trie = trie\n        self.use_dvcignore = use_dvcignore\n        self.dvcignore_root = dvcignore_root\n\n    @property\n    def rev(self):\n        return self.trie.rev\n\n    @property\n    def tree_root(self):\n        return self._tree_root\n\n    def _get_key(self, path):\n        if isinstance(path, str):\n            if not os.path.isabs(path):\n                relparts = path.split(os.sep)\n            else:\n                relparts = relpath(path, self.tree_root).split(os.sep)\n        else:\n            relparts = path.relative_to(self.tree_root).parts\n        if relparts == [\".\"]:\n            return ()\n        return tuple(relparts)\n\n    @cached_property\n    def dvcignore(self):\n        from dvc.ignore import DvcIgnoreFilter, DvcIgnoreFilterNoop\n\n        root = self.dvcignore_root or self.tree_root\n        cls = DvcIgnoreFilter if self.use_dvcignore else DvcIgnoreFilterNoop\n        return cls(self, root)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.open_GitTree.open.try_.except_IsADirectoryError_.raise_IsADirectoryError_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.open_GitTree.open.try_.except_IsADirectoryError_.raise_IsADirectoryError_", "embedding": null, "metadata": {"file_path": "dvc/tree/git.py", "file_name": "git.py", "file_type": "text/x-python", "category": "implementation", "start_line": 50, "end_line": 66, "span_ids": ["GitTree.open"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTree(BaseTree):\n\n    def open(\n        self, path, mode=\"r\", encoding=None\n    ):  # pylint: disable=arguments-differ\n        # NOTE: this is incorrect, we need to use locale to determine default\n        # encoding.\n        encoding = encoding or \"utf-8\"\n\n        key = self._get_key(path)\n        try:\n            return self.trie.open(key, mode=mode, encoding=encoding)\n        except KeyError as exc:\n            msg = os.strerror(errno.ENOENT) + f\"in branch '{self.rev}'\"\n            raise FileNotFoundError(errno.ENOENT, msg, path) from exc\n        except IsADirectoryError as exc:\n            raise IsADirectoryError(\n                errno.EISDIR, os.strerror(errno.EISDIR), path\n            ) from exc", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.exists_GitTree.isfile.return.self_trie_isfile_key_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.exists_GitTree.isfile.return.self_trie_isfile_key_", "embedding": null, "metadata": {"file_path": "dvc/tree/git.py", "file_name": "git.py", "file_type": "text/x-python", "category": "implementation", "start_line": 68, "end_line": 94, "span_ids": ["GitTree.isfile", "GitTree.exists", "GitTree.isdir"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTree(BaseTree):\n\n    def exists(\n        self, path, use_dvcignore=True\n    ):  # pylint: disable=arguments-differ\n        def _is_ignored(path):\n            return self.dvcignore.is_ignored_file(\n                path\n            ) or self.dvcignore.is_ignored_dir(path)\n\n        if use_dvcignore and _is_ignored(path):\n            return False\n\n        key = self._get_key(path)\n        return self.trie.exists(key)\n\n    def isdir(\n        self, path, use_dvcignore=True\n    ):  # pylint: disable=arguments-differ\n        if use_dvcignore and self.dvcignore.is_ignored_dir(path):\n            return False\n        key = self._get_key(path)\n        return self.trie.isdir(key)\n\n    def isfile(self, path):  # pylint: disable=arguments-differ\n        if self.dvcignore.is_ignored_file(path):\n            return False\n        key = self._get_key(path)\n        return self.trie.isfile(key)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.walk_GitTree.walk.for_prefix_dirs_files_i.yield_root_dirs_files": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.walk_GitTree.walk.for_prefix_dirs_files_i.yield_root_dirs_files", "embedding": null, "metadata": {"file_path": "dvc/tree/git.py", "file_name": "git.py", "file_type": "text/x-python", "category": "implementation", "start_line": 96, "end_line": 132, "span_ids": ["GitTree.walk"], "tokens": 268}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTree(BaseTree):\n\n    def walk(\n        self,\n        top,\n        topdown=True,\n        onerror=None,\n        use_dvcignore=True,\n        ignore_subrepos=True,\n    ):\n        \"\"\"Directory tree generator.\n\n        See `os.walk` for the docs. Differences:\n        - no support for symlinks\n        \"\"\"\n        if not self.isdir(top, use_dvcignore=use_dvcignore):\n            if onerror:\n                if self.exists(top, use_dvcignore=use_dvcignore):\n                    exc = NotADirectoryError(\n                        errno.ENOTDIR, os.strerror(errno.ENOTDIR), top\n                    )\n                else:\n                    exc = FileNotFoundError(\n                        errno.ENOENT, os.strerror(errno.ENOENT), top\n                    )\n                onerror(exc)\n            return []\n\n        key = self._get_key(top)\n        for prefix, dirs, files in self.trie.walk(key, topdown=topdown):\n            if prefix:\n                root = os.path.join(self.tree_root, os.sep.join(prefix))\n            else:\n                root = self.tree_root\n            if use_dvcignore:\n                dirs[:], files[:] = self.dvcignore(\n                    root, dirs, files, ignore_subrepos=ignore_subrepos,\n                )\n            yield root, dirs, files", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.isexec_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/git.py_GitTree.isexec_", "embedding": null, "metadata": {"file_path": "dvc/tree/git.py", "file_name": "git.py", "file_type": "text/x-python", "category": "implementation", "start_line": 134, "end_line": 164, "span_ids": ["GitTree.isexec", "GitTree.hash_jobs", "GitTree.walk_files", "GitTree._reset", "GitTree.stat"], "tokens": 233}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class GitTree(BaseTree):\n\n    def isexec(self, path_info):\n        if not self.exists(path_info):\n            return False\n\n        mode = self.stat(path_info).st_mode\n        return is_exec(mode)\n\n    def stat(self, path):\n        key = self._get_key(path)\n        try:\n            return self.trie.stat(key)\n        except KeyError:\n            raise FileNotFoundError(\n                errno.ENOENT, os.strerror(errno.ENOENT), path\n            )\n\n    @property\n    def hash_jobs(self):  # pylint: disable=invalid-overridden-method\n        # NOTE: gitpython is not threadsafe. See\n        # https://github.com/iterative/dvc/issues/4079\n        return 1\n\n    def walk_files(self, top):  # pylint: disable=arguments-differ\n        for root, _, files in self.walk(top):\n            for file in files:\n                # NOTE: os.path.join is ~5.5 times slower\n                yield f\"{root}{os.sep}{file}\"\n\n    def _reset(self):\n        return self.__dict__.pop(\"dvcignore\", None)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.open_HDFSTree.exists.with_self_hdfs_path_info_.return.file_info_type_pyarrow": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.open_HDFSTree.exists.with_self_hdfs_path_info_.return.file_info_type_pyarrow", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 65, "end_line": 91, "span_ids": ["HDFSTree.open", "HDFSTree.exists"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    @contextmanager\n    def open(self, path_info, mode=\"r\", encoding=None):\n        assert mode in {\"r\", \"rt\", \"rb\"}\n\n        try:\n            with self.hdfs(path_info) as hdfs, closing(\n                hdfs.open_input_stream(path_info.path)\n            ) as fd:\n                if mode == \"rb\":\n                    yield fd\n                else:\n                    yield io.TextIOWrapper(fd, encoding=encoding)\n        except OSError as e:\n            # Empty .errno and not specific enough error class in pyarrow,\n            # see https://issues.apache.org/jira/browse/ARROW-6248\n            if \"file does not exist\" in str(e):\n                raise FileNotFoundError(*e.args)\n            raise\n\n    def exists(self, path_info, use_dvcignore=True):\n        assert not isinstance(path_info, list)\n        assert path_info.scheme == \"hdfs\"\n        with self.hdfs(path_info) as hdfs:\n            import pyarrow.fs\n\n            file_info = hdfs.get_file_info(path_info.path)\n            return file_info.type != pyarrow.fs.FileType.NotFound", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._walk_HDFSTree._walk.if_not_topdown_.yield_root_dirs_nondirs": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._walk_HDFSTree._walk.if_not_topdown_.yield_root_dirs_nondirs", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 93, "end_line": 118, "span_ids": ["HDFSTree._walk"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    def _walk(self, hdfs, root, topdown=True):\n        import posixpath\n\n        from pyarrow.fs import FileSelector, FileType\n\n        dirs = deque()\n        nondirs = deque()\n\n        selector = FileSelector(root)\n        for entry in hdfs.get_file_info(selector):\n            if entry.type == FileType.Directory:\n                dirs.append(entry.base_name)\n            else:\n                nondirs.append(entry.base_name)\n\n        if topdown:\n            yield root, dirs, nondirs\n\n        for dname in dirs:\n            # NOTE: posixpath.join() is slower\n            yield from self._walk(\n                hdfs, f\"{root}{posixpath.sep}{dname}\", topdown=topdown\n            )\n\n        if not topdown:\n            yield root, dirs, nondirs", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.walk_HDFSTree.makedirs.with_self_hdfs_path_info_.hdfs_create_dir_path_info": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.walk_HDFSTree.makedirs.with_self_hdfs_path_info_.hdfs_create_dir_path_info", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 120, "end_line": 152, "span_ids": ["HDFSTree.makedirs", "HDFSTree.walk", "HDFSTree.remove", "HDFSTree.walk_files"], "tokens": 267}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    def walk(self, path_info, **kwargs):\n        if not self.isdir(path_info):\n            return\n\n        with self.hdfs(path_info) as hdfs:\n            for root, dnames, fnames in self._walk(\n                hdfs, path_info.path, **kwargs\n            ):\n                yield path_info.replace(path=root), dnames, fnames\n\n    def walk_files(self, path_info, **kwargs):\n        for root, _, fnames in self.walk(path_info):\n            yield from (root / fname for fname in fnames)\n\n    def remove(self, path_info):\n        if path_info.scheme != \"hdfs\":\n            raise NotImplementedError\n\n        if self.exists(path_info):\n            logger.debug(f\"Removing {path_info.path}\")\n            with self.hdfs(path_info) as hdfs:\n                import pyarrow.fs\n\n                file_info = hdfs.get_file_info(path_info.path)\n                if file_info.type == pyarrow.fs.FileType.Directory:\n                    hdfs.delete_dir(path_info.path)\n                else:\n                    hdfs.delete_file(path_info.path)\n\n    def makedirs(self, path_info):\n        with self.hdfs(path_info) as hdfs:\n            # NOTE: fs.create_dir creates parents by default\n            hdfs.create_dir(path_info.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.copy_HDFSTree.isdir.with_self_hdfs_path_info_.return.file_info_type_pyarrow": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.copy_HDFSTree.isdir.with_self_hdfs_path_info_.return.file_info_type_pyarrow", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 154, "end_line": 183, "span_ids": ["HDFSTree.copy", "HDFSTree.isdir", "HDFSTree.isfile"], "tokens": 272}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    def copy(self, from_info, to_info, **_kwargs):\n        # NOTE: hdfs.copy_file is not supported yet in pyarrow\n        with self.hdfs(to_info) as hdfs:\n            # NOTE: this is how `hadoop fs -cp` works too: it copies through\n            # your local machine.\n            with closing(hdfs.open_input_stream(from_info.path)) as from_fobj:\n                tmp_info = to_info.parent / tmp_fname(to_info.name)\n                try:\n                    with closing(\n                        hdfs.open_output_stream(tmp_info.path)\n                    ) as tmp_fobj:\n                        tmp_fobj.write(from_fobj.read())\n                    hdfs.move(tmp_info.path, to_info.path)\n                except Exception:\n                    self.remove(tmp_info)\n                    raise\n\n    def isfile(self, path_info):\n        with self.hdfs(path_info) as hdfs:\n            import pyarrow.fs\n\n            file_info = hdfs.get_file_info(path_info.path)\n            return file_info.type == pyarrow.fs.FileType.File\n\n    def isdir(self, path_info):\n        with self.hdfs(path_info) as hdfs:\n            import pyarrow.fs\n\n            file_info = hdfs.get_file_info(path_info.path)\n            return file_info.type == pyarrow.fs.FileType.Directory", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.hadoop_fs_HDFSTree.hadoop_fs.return.out_decode_utf_8_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree.hadoop_fs_HDFSTree.hadoop_fs.return.out_decode_utf_8_", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 185, "end_line": 208, "span_ids": ["HDFSTree.hadoop_fs"], "tokens": 207}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    def hadoop_fs(self, cmd, user=None):\n        cmd = \"hadoop fs -\" + cmd\n        if user:\n            cmd = f\"HADOOP_USER_NAME={user} \" + cmd\n\n        # NOTE: close_fds doesn't work with redirected stdin/stdout/stderr.\n        # See https://github.com/iterative/dvc/issues/1197.\n        close_fds = os.name != \"nt\"\n\n        executable = os.getenv(\"SHELL\") if os.name != \"nt\" else None\n        p = subprocess.Popen(\n            cmd,\n            shell=True,\n            close_fds=close_fds,\n            executable=executable,\n            env=fix_env(os.environ),\n            stdin=subprocess.PIPE,\n            stdout=subprocess.PIPE,\n            stderr=subprocess.PIPE,\n        )\n        out, err = p.communicate()\n        if p.returncode != 0:\n            raise RemoteCmdError(self.scheme, cmd, p.returncode, err)\n        return out.decode(\"utf-8\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._upload_HDFSTree._upload.with_self_hdfs_to_info_a.hdfs_move_tmp_file_to_in": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/tree/hdfs.py_HDFSTree._upload_HDFSTree._upload.with_self_hdfs_to_info_a.hdfs_move_tmp_file_to_in", "embedding": null, "metadata": {"file_path": "dvc/tree/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 232, "end_line": 248, "span_ids": ["HDFSTree._upload"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class HDFSTree(BaseTree):\n\n    def _upload(\n        self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs\n    ):\n        with self.hdfs(to_info) as hdfs:\n            tmp_file = tmp_fname(to_info.path)\n            total = os.path.getsize(from_file)\n            with open(from_file, \"rb\") as fobj:\n                with Tqdm.wrapattr(\n                    fobj,\n                    \"read\",\n                    desc=name,\n                    total=total,\n                    disable=no_progress_bar,\n                ) as wrapped:\n                    with hdfs.open_output_stream(tmp_file) as sobj:\n                        sobj.write(wrapped.read())\n            hdfs.move(tmp_file, to_info.path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_logging_test_new_checkpoint.None_2.assert_tmp_dir_metric": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_logging_test_new_checkpoint.None_2.assert_tmp_dir_metric", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_checkpoints.py", "file_name": "test_checkpoints.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 36, "span_ids": ["imports", "test_new_checkpoint"], "tokens": 299}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nimport pytest\nfrom funcy import first\n\nfrom dvc.exceptions import DvcException\nfrom dvc.repo.experiments import Experiments, MultipleBranchError\nfrom dvc.repo.experiments.base import EXEC_APPLY, EXEC_CHECKPOINT\n\n\n@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_new_checkpoint(\n    tmp_dir, scm, dvc, checkpoint_stage, mocker, workspace\n):\n    new_mock = mocker.spy(dvc.experiments, \"new\")\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    exp = first(results)\n\n    new_mock.assert_called_once()\n    for rev in dvc.brancher([exp]):\n        if rev == \"workspace\":\n            continue\n        tree = dvc.repo_tree\n        with tree.open(tmp_dir / \"foo\") as fobj:\n            assert fobj.read().strip() == \"5\"\n        with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n            assert fobj.read().strip() == \"foo: 2\"\n\n    if workspace:\n        assert scm.get_ref(EXEC_APPLY) == exp\n    assert scm.get_ref(EXEC_CHECKPOINT) == exp\n    if workspace:\n        assert (tmp_dir / \"foo\").read_text().strip() == \"5\"\n        assert (tmp_dir / \"metrics.yaml\").read_text().strip() == \"foo: 2\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_test_resume_checkpoint_test_resume_checkpoint.assert_scm_get_ref_EXEC_C": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_test_resume_checkpoint_test_resume_checkpoint.assert_scm_get_ref_EXEC_C", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_checkpoints.py", "file_name": "test_checkpoints.py", "file_type": "text/x-python", "category": "test", "start_line": 39, "end_line": 92, "span_ids": ["test_resume_checkpoint"], "tokens": 364}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"checkpoint_resume, workspace\",\n    [\n        (Experiments.LAST_CHECKPOINT, True),\n        (Experiments.LAST_CHECKPOINT, False),\n        (\"foo\", True),\n        (\"foo\", False),\n    ],\n)\ndef test_resume_checkpoint(\n    tmp_dir, scm, dvc, checkpoint_stage, checkpoint_resume, workspace\n):\n    with pytest.raises(DvcException):\n        dvc.experiments.run(\n            checkpoint_stage=checkpoint_stage.addressing,\n            checkpoint_resume=checkpoint_resume,\n            tmp_dir=not workspace,\n        )\n\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n\n    with pytest.raises(DvcException):\n        dvc.experiments.run(\n            checkpoint_stage.addressing,\n            checkpoint_resume=\"abc1234\",\n            tmp_dir=not workspace,\n        )\n\n    if checkpoint_resume != Experiments.LAST_CHECKPOINT:\n        checkpoint_resume = first(results)\n\n    if not workspace:\n        dvc.experiments.apply(first(results))\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing,\n        checkpoint_resume=checkpoint_resume,\n        tmp_dir=not workspace,\n    )\n    exp = first(results)\n\n    for rev in dvc.brancher([exp]):\n        if rev == \"workspace\":\n            continue\n        tree = dvc.repo_tree\n        with tree.open(tmp_dir / \"foo\") as fobj:\n            assert fobj.read().strip() == \"10\"\n        with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n            assert fobj.read().strip() == \"foo: 2\"\n\n    if workspace:\n        assert scm.get_ref(EXEC_APPLY) == exp\n    assert scm.get_ref(EXEC_CHECKPOINT) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_test_reset_checkpoint_test_reset_checkpoint.assert_scm_get_ref_EXEC_C": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_checkpoints.py_test_reset_checkpoint_test_reset_checkpoint.assert_scm_get_ref_EXEC_C", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_checkpoints.py", "file_name": "test_checkpoints.py", "file_type": "text/x-python", "category": "test", "start_line": 95, "end_line": 150, "span_ids": ["test_reset_checkpoint"], "tokens": 379}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_reset_checkpoint(\n    tmp_dir, scm, dvc, checkpoint_stage, caplog, workspace\n):\n    from dvc.repo.experiments.base import CheckpointExistsError\n\n    dvc.experiments.run(\n        checkpoint_stage.addressing, name=\"foo\", tmp_dir=not workspace,\n    )\n\n    if workspace:\n        scm.reset(hard=True)\n        scm.gitpython.repo.git.clean(force=True)\n\n    if workspace:\n        with caplog.at_level(logging.ERROR):\n            dvc.experiments.run(\n                checkpoint_stage.addressing,\n                name=\"foo\",\n                params=[\"foo=2\"],\n                tmp_dir=not workspace,\n            )\n        assert \"checkpoint experiment conflicts with existing\" in caplog.text\n\n        scm.reset(hard=True)\n        scm.gitpython.repo.git.clean(force=True)\n    else:\n        with pytest.raises(CheckpointExistsError):\n            dvc.experiments.run(\n                checkpoint_stage.addressing,\n                name=\"foo\",\n                params=[\"foo=2\"],\n                tmp_dir=not workspace,\n            )\n\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing,\n        params=[\"foo=2\"],\n        name=\"foo\",\n        force=True,\n        tmp_dir=not workspace,\n    )\n    exp = first(results)\n\n    for rev in dvc.brancher([exp]):\n        if rev == \"workspace\":\n            continue\n        tree = dvc.repo_tree\n        with tree.open(tmp_dir / \"foo\") as fobj:\n            assert fobj.read().strip() == \"5\"\n        with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n            assert fobj.read().strip() == \"foo: 2\"\n\n    if workspace:\n        assert scm.get_ref(EXEC_APPLY) == exp\n    assert scm.get_ref(EXEC_CHECKPOINT) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_diff.py_from_funcy_import_first_test_diff_head.assert_dvc_experiments_di": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_diff.py_from_funcy_import_first_test_diff_head.assert_dvc_experiments_di", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 18, "span_ids": ["imports", "test_diff_empty", "test_diff_head"], "tokens": 162}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from funcy import first\n\n\ndef test_diff_empty(tmp_dir, scm, dvc, exp_stage):\n    assert dvc.experiments.diff() == {\n        \"params\": {},\n        \"metrics\": {},\n    }\n\n\ndef test_diff_head(tmp_dir, scm, dvc, exp_stage):\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp = first(results)\n\n    assert dvc.experiments.diff(a_rev=\"HEAD\", b_rev=exp) == {\n        \"params\": {\"params.yaml\": {\"foo\": {\"diff\": 1, \"old\": 1, \"new\": 2}}},\n        \"metrics\": {\"metrics.yaml\": {\"foo\": {\"diff\": 1, \"old\": 1, \"new\": 2}}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_diff.py_test_diff_exp_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_diff.py_test_diff_exp_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 21, "end_line": 31, "span_ids": ["test_diff_exp"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_exp(tmp_dir, scm, dvc, exp_stage):\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp_a = first(results)\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"])\n    exp_b = first(results)\n\n    assert dvc.experiments.diff(a_rev=exp_a, b_rev=exp_b) == {\n        \"params\": {\"params.yaml\": {\"foo\": {\"diff\": 1, \"old\": 2, \"new\": 3}}},\n        \"metrics\": {\"metrics.yaml\": {\"foo\": {\"diff\": 1, \"old\": 2, \"new\": 3}}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_logging_test_new_simple.assert_scm_resolve_rev_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_logging_test_new_simple.assert_scm_resolve_rev_ex", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["imports", "test_new_simple"], "tokens": 322}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport stat\n\nimport pytest\nfrom funcy import first\n\nfrom dvc.dvcfile import PIPELINE_FILE\nfrom dvc.repo.experiments.utils import exp_refs_by_rev\nfrom dvc.utils.serialize import PythonFileCorruptedError\nfrom tests.func.test_repro_multistage import COPY_SCRIPT\n\n\n@pytest.mark.parametrize(\n    \"name,workspace\",\n    [(None, True), (None, False), (\"foo\", True), (\"foo\", False)],\n)\ndef test_new_simple(tmp_dir, scm, dvc, exp_stage, mocker, name, workspace):\n    baseline = scm.get_rev()\n    tmp_dir.gen(\"params.yaml\", \"foo: 2\")\n\n    new_mock = mocker.spy(dvc.experiments, \"new\")\n    results = dvc.experiments.run(\n        exp_stage.addressing, name=name, tmp_dir=not workspace\n    )\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n    assert ref_info and ref_info.baseline_sha == baseline\n\n    new_mock.assert_called_once()\n    tree = scm.get_tree(exp)\n    with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == \"foo: 2\"\n\n    if workspace:\n        assert (tmp_dir / \"metrics.yaml\").read_text().strip() == \"foo: 2\"\n\n    exp_name = name if name else ref_info.name\n    assert dvc.experiments.get_exact_name(exp) == exp_name\n    assert scm.resolve_rev(exp_name) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_experiment_exists_test_experiment_exists.with_tree_open_tmp_dir_.assert_fobj_read_strip_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_experiment_exists_test_experiment_exists.with_tree_open_tmp_dir_.assert_fobj_read_strip_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 43, "end_line": 73, "span_ids": ["test_experiment_exists"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_experiment_exists(tmp_dir, scm, dvc, exp_stage, mocker, workspace):\n    from dvc.repo.experiments.base import ExperimentExistsError\n\n    dvc.experiments.run(\n        exp_stage.addressing,\n        name=\"foo\",\n        params=[\"foo=2\"],\n        tmp_dir=not workspace,\n    )\n\n    with pytest.raises(ExperimentExistsError):\n        dvc.experiments.run(\n            exp_stage.addressing,\n            name=\"foo\",\n            params=[\"foo=3\"],\n            tmp_dir=not workspace,\n        )\n\n    results = dvc.experiments.run(\n        exp_stage.addressing,\n        name=\"foo\",\n        params=[\"foo=3\"],\n        force=True,\n        tmp_dir=not workspace,\n    )\n    exp = first(results)\n\n    tree = scm.get_tree(exp)\n    with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == \"foo: 3\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_modify_params_test_modify_params.with_tree_open_tmp_dir_.assert_fobj_read_strip_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_modify_params_test_modify_params.with_tree_open_tmp_dir_.assert_fobj_read_strip_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 102, "end_line": 147, "span_ids": ["test_modify_params"], "tokens": 483}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"changes, expected\",\n    [\n        [[\"foo=baz\"], \"{foo: baz, goo: {bag: 3}, lorem: false}\"],\n        [[\"foo=baz,goo=bar\"], \"{foo: baz, goo: bar, lorem: false}\"],\n        [\n            [\"goo.bag=4\"],\n            \"{foo: [bar: 1, baz: 2], goo: {bag: 4}, lorem: false}\",\n        ],\n        [[\"foo[0]=bar\"], \"{foo: [bar, baz: 2], goo: {bag: 3}, lorem: false}\"],\n        [\n            [\"foo[1].baz=3\"],\n            \"{foo: [bar: 1, baz: 3], goo: {bag: 3}, lorem: false}\",\n        ],\n        [\n            [\"foo[1]=- baz\\n- goo\"],\n            \"{foo: [bar: 1, [baz, goo]], goo: {bag: 3}, lorem: false}\",\n        ],\n        [\n            [\"lorem.ipsum=3\"],\n            \"{foo: [bar: 1, baz: 2], goo: {bag: 3}, lorem: {ipsum: 3}}\",\n        ],\n    ],\n)\ndef test_modify_params(tmp_dir, scm, dvc, mocker, changes, expected):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\n        \"params.yaml\", \"{foo: [bar: 1, baz: 2], goo: {bag: 3}, lorem: false}\"\n    )\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\", \"goo\", \"lorem\"],\n        name=\"copy-file\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"init\")\n\n    new_mock = mocker.spy(dvc.experiments, \"new\")\n    results = dvc.experiments.run(stage.addressing, params=changes)\n    exp = first(results)\n\n    new_mock.assert_called_once()\n    tree = scm.get_tree(exp)\n    with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_apply_test_apply.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_apply_test_apply.None_3", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 150, "end_line": 193, "span_ids": ["test_apply"], "tokens": 382}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"queue\", [True, False])\ndef test_apply(tmp_dir, scm, dvc, exp_stage, queue):\n    from dvc.exceptions import InvalidArgumentError\n    from dvc.repo.experiments.base import ApplyConflictError\n\n    metrics_original = (tmp_dir / \"metrics.yaml\").read_text().strip()\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], queue=queue, tmp_dir=True\n    )\n    exp_a = first(results)\n\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=3\"], queue=queue, tmp_dir=True\n    )\n    exp_b = first(results)\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.experiments.apply(\"foo\")\n\n    dvc.experiments.apply(exp_a)\n    assert (tmp_dir / \"params.yaml\").read_text().strip() == \"foo: 2\"\n    assert (\n        (tmp_dir / \"metrics.yaml\").read_text().strip() == metrics_original\n        if queue\n        else \"foo: 2\"\n    )\n\n    with pytest.raises(ApplyConflictError):\n        dvc.experiments.apply(exp_b)\n        # failed apply should revert everything to prior state\n        assert (tmp_dir / \"params.yaml\").read_text().strip() == \"foo: 2\"\n        assert (\n            (tmp_dir / \"metrics.yaml\").read_text().strip() == metrics_original\n            if queue\n            else \"foo: 2\"\n        )\n\n    dvc.experiments.apply(exp_b, force=True)\n    assert (tmp_dir / \"params.yaml\").read_text().strip() == \"foo: 3\"\n    assert (\n        (tmp_dir / \"metrics.yaml\").read_text().strip() == metrics_original\n        if queue\n        else \"foo: 3\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_update_py_params_test_update_py_params.with_pytest_raises_Python.dvc_experiments_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_update_py_params_test_update_py_params.with_pytest_raises_Python.dvc_experiments_run_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 224, "end_line": 302, "span_ids": ["test_update_py_params"], "tokens": 752}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_update_py_params(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.py\", \"INT = 1\\n\")\n    stage = dvc.run(\n        cmd=\"python copy.py params.py metrics.py\",\n        metrics_no_cache=[\"metrics.py\"],\n        params=[\"params.py:INT\"],\n        name=\"copy-file\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.py\", \"metrics.py\"])\n    scm.commit(\"init\")\n\n    results = dvc.experiments.run(\n        stage.addressing, params=[\"params.py:INT=2\"], tmp_dir=True\n    )\n    exp_a = first(results)\n\n    tree = scm.get_tree(exp_a)\n    with tree.open(tmp_dir / \"params.py\") as fobj:\n        assert fobj.read().strip() == \"INT = 2\"\n    with tree.open(tmp_dir / \"metrics.py\") as fobj:\n        assert fobj.read().strip() == \"INT = 2\"\n\n    tmp_dir.gen(\n        \"params.py\",\n        \"INT = 1\\nFLOAT = 0.001\\nDICT = {'a': 1}\\n\\n\"\n        \"class Train:\\n    seed = 2020\\n\\n\"\n        \"class Klass:\\n    def __init__(self):\\n        self.a = 111\\n\",\n    )\n    stage = dvc.run(\n        cmd=\"python copy.py params.py metrics.py\",\n        metrics_no_cache=[\"metrics.py\"],\n        params=[\"params.py:INT,FLOAT,DICT,Train,Klass\"],\n        name=\"copy-file\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.py\", \"metrics.py\"])\n    scm.commit(\"init\")\n\n    results = dvc.experiments.run(\n        stage.addressing,\n        params=[\"params.py:FLOAT=0.1,Train.seed=2121,Klass.a=222\"],\n        tmp_dir=True,\n    )\n    exp_a = first(results)\n\n    result = (\n        \"INT = 1\\nFLOAT = 0.1\\nDICT = {'a': 1}\\n\\n\"\n        \"class Train:\\n    seed = 2121\\n\\n\"\n        \"class Klass:\\n    def __init__(self):\\n        self.a = 222\"\n    )\n\n    def _dos2unix(text):\n        if os.name != \"nt\":\n            return text\n\n        # NOTE: git on windows will use CRLF, so we have to convert it to LF\n        # in order to compare with the original\n        return text.replace(\"\\r\\n\", \"\\n\")\n\n    tree = scm.get_tree(exp_a)\n    with tree.open(tmp_dir / \"params.py\") as fobj:\n        assert _dos2unix(fobj.read().strip()) == result\n    with tree.open(tmp_dir / \"metrics.py\") as fobj:\n        assert _dos2unix(fobj.read().strip()) == result\n\n    tmp_dir.gen(\"params.py\", \"INT = 1\\n\")\n    stage = dvc.run(\n        cmd=\"python copy.py params.py metrics.py\",\n        metrics_no_cache=[\"metrics.py\"],\n        params=[\"params.py:INT\"],\n        name=\"copy-file\",\n    )\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.py\", \"metrics.py\"])\n    scm.commit(\"init\")\n\n    with pytest.raises(PythonFileCorruptedError):\n        dvc.experiments.run(\n            stage.addressing, params=[\"params.py:INT=2a\"], tmp_dir=True\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_detached_parent_test_detached_parent.assert_tmp_dir_params": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_detached_parent_test_detached_parent.assert_tmp_dir_params", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 305, "end_line": 319, "span_ids": ["test_detached_parent"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_detached_parent(tmp_dir, scm, dvc, exp_stage, mocker):\n    detached_rev = scm.get_rev()\n\n    tmp_dir.gen(\"params.yaml\", \"foo: 2\")\n    dvc.reproduce(exp_stage.addressing)\n    scm.add([\"dvc.yaml\", \"dvc.lock\", \"copy.py\", \"params.yaml\", \"metrics.yaml\"])\n    scm.commit(\"v2\")\n\n    scm.checkout(detached_rev)\n    assert scm.gitpython.repo.head.is_detached\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"])\n\n    exp_rev = first(results)\n    assert dvc.experiments.get_baseline(exp_rev) == detached_rev\n    assert (tmp_dir / \"params.yaml\").read_text().strip() == \"foo: 3\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_branch_test_branch.assert_scm_resolve_rev_b": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_branch_test_branch.assert_scm_resolve_rev_b", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 322, "end_line": 358, "span_ids": ["test_branch"], "tokens": 332}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_branch(tmp_dir, scm, dvc, exp_stage):\n    from dvc.exceptions import InvalidArgumentError\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.experiments.branch(\"foo\", \"branch\")\n\n    scm.branch(\"branch-exists\")\n\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], name=\"foo\"\n    )\n    exp_a = first(results)\n    ref_a = dvc.experiments.get_branch_by_rev(exp_a)\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.experiments.branch(\"foo\", \"branch-exists\")\n    dvc.experiments.branch(\"foo\", \"branch-name\")\n    dvc.experiments.branch(exp_a, \"branch-rev\")\n    dvc.experiments.branch(ref_a, \"branch-ref\")\n\n    for name in [\"branch-name\", \"branch-rev\", \"branch-ref\"]:\n        assert name in scm.list_branches()\n        assert scm.resolve_rev(name) == exp_a\n\n    tmp_dir.scm_gen({\"new_file\": \"new_file\"}, commit=\"new baseline\")\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], name=\"foo\"\n    )\n    exp_b = first(results)\n    ref_b = dvc.experiments.get_branch_by_rev(exp_b)\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.experiments.branch(\"foo\", \"branch-name\")\n    dvc.experiments.branch(ref_b, \"branch-ref-b\")\n\n    assert \"branch-ref-b\" in scm.list_branches()\n    assert scm.resolve_rev(\"branch-ref-b\") == exp_b", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_no_scm_test_no_scm.for_cmd_in_.with_pytest_raises_NoSCME.getattr_dvc_experiments_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_no_scm_test_no_scm.for_cmd_in_.with_pytest_raises_NoSCME.getattr_dvc_experiments_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 361, "end_line": 379, "span_ids": ["test_no_scm"], "tokens": 110}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_scm(tmp_dir):\n    from dvc.repo import Repo as DvcRepo\n    from dvc.scm.base import NoSCMError\n\n    dvc = DvcRepo.init(no_scm=True)\n\n    for cmd in [\n        \"apply\",\n        \"branch\",\n        \"diff\",\n        \"show\",\n        \"run\",\n        \"gc\",\n        \"push\",\n        \"pull\",\n        \"ls\",\n    ]:\n        with pytest.raises(NoSCMError):\n            getattr(dvc.experiments, cmd)()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_untracked_test_untracked.with_tree_open_tmp_dir_.assert_fobj_read_strip_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_untracked_test_untracked.with_tree_open_tmp_dir_.assert_fobj_read_strip_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 382, "end_line": 414, "span_ids": ["test_untracked"], "tokens": 291}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_untracked(tmp_dir, scm, dvc, caplog, workspace):\n    tmp_dir.gen(\"copy.py\", COPY_SCRIPT)\n    tmp_dir.gen(\"params.yaml\", \"foo: 1\")\n    stage = dvc.run(\n        cmd=\"python copy.py params.yaml metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        params=[\"foo\"],\n        deps=[\"copy.py\"],\n        name=\"copy-file\",\n        no_exec=True,\n    )\n\n    # copy.py is untracked\n    with caplog.at_level(logging.ERROR):\n        results = dvc.experiments.run(\n            stage.addressing, params=[\"foo=2\"], tmp_dir=True\n        )\n        assert \"Failed to reproduce experiment\" in caplog.text\n        assert not results\n\n    # dvc.yaml, copy.py are staged as new file but not committed\n    scm.add([\"dvc.yaml\", \"copy.py\"])\n    results = dvc.experiments.run(\n        stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    exp = first(results)\n    tree = scm.get_tree(exp)\n    assert tree.exists(\"dvc.yaml\")\n    assert tree.exists(\"dvc.lock\")\n    assert tree.exists(\"copy.py\")\n    with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == \"foo: 2\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_dirty_lockfile_test_packed_args_exists.with_caplog_at_level_logg.assert_Temporary_DVC_fil": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_dirty_lockfile_test_packed_args_exists.with_caplog_at_level_logg.assert_Temporary_DVC_fil", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 414, "end_line": 447, "span_ids": ["test_dirty_lockfile", "test_packed_args_exists"], "tokens": 276}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_dirty_lockfile(tmp_dir, scm, dvc, exp_stage, workspace):\n    from dvc.dvcfile import LockfileCorruptedError\n\n    tmp_dir.gen(\"dvc.lock\", \"foo\")\n\n    with pytest.raises(LockfileCorruptedError):\n        dvc.reproduce(exp_stage.addressing)\n\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    exp = first(results)\n\n    tree = scm.get_tree(exp)\n    with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == \"foo: 2\"\n\n    if not workspace:\n        assert (tmp_dir / \"dvc.lock\").read_text() == \"foo\"\n\n\ndef test_packed_args_exists(tmp_dir, scm, dvc, exp_stage, caplog):\n    from dvc.repo.experiments.executor.base import BaseExecutor\n\n    tmp_dir.scm_gen(\n        tmp_dir / \".dvc\" / \"tmp\" / BaseExecutor.PACKED_ARGS_FILE,\n        \"\",\n        commit=\"commit args file\",\n    )\n\n    with caplog.at_level(logging.WARNING):\n        dvc.experiments.run(exp_stage.addressing)\n        assert \"Temporary DVC file\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_list_test_list.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_list_test_list.None_2", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 450, "end_line": 479, "span_ids": ["test_list"], "tokens": 308}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_list(tmp_dir, scm, dvc, exp_stage):\n    baseline_a = scm.get_rev()\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp_a = first(results)\n    ref_info_a = first(exp_refs_by_rev(scm, exp_a))\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"])\n    exp_b = first(results)\n    ref_info_b = first(exp_refs_by_rev(scm, exp_b))\n\n    tmp_dir.scm_gen(\"new\", \"new\", commit=\"new\")\n    baseline_c = scm.get_rev()\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=4\"])\n    exp_c = first(results)\n    ref_info_c = first(exp_refs_by_rev(scm, exp_c))\n\n    assert dvc.experiments.ls() == {\n        baseline_c: [ref_info_c.name],\n    }\n\n    exp_list = dvc.experiments.ls(rev=ref_info_a.baseline_sha)\n    assert {key: set(val) for key, val in exp_list.items()} == {\n        baseline_a: {ref_info_a.name, ref_info_b.name}\n    }\n\n    exp_list = dvc.experiments.ls(all_=True)\n    assert {key: set(val) for key, val in exp_list.items()} == {\n        baseline_a: {ref_info_a.name, ref_info_b.name},\n        baseline_c: {ref_info_c.name},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_subdir_test_subdir.assert_scm_resolve_rev_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_subdir_test_subdir.assert_scm_resolve_rev_re", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 482, "end_line": 516, "span_ids": ["test_subdir"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_subdir(tmp_dir, scm, dvc, workspace):\n    subdir = tmp_dir / \"dir\"\n    subdir.gen(\"copy.py\", COPY_SCRIPT)\n    subdir.gen(\"params.yaml\", \"foo: 1\")\n\n    with subdir.chdir():\n        dvc.run(\n            cmd=\"python copy.py params.yaml metrics.yaml\",\n            metrics_no_cache=[\"metrics.yaml\"],\n            params=[\"foo\"],\n            name=\"copy-file\",\n            no_exec=True,\n        )\n        scm.add(\n            [subdir / \"dvc.yaml\", subdir / \"copy.py\", subdir / \"params.yaml\"]\n        )\n        scm.commit(\"init\")\n\n        results = dvc.experiments.run(\n            PIPELINE_FILE, params=[\"foo=2\"], tmp_dir=not workspace\n        )\n        assert results\n\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    tree = scm.get_tree(exp)\n    for fname in [\"metrics.yaml\", \"dvc.lock\"]:\n        assert tree.exists(subdir / fname)\n    with tree.open(subdir / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == \"foo: 2\"\n\n    assert dvc.experiments.get_exact_name(exp) == ref_info.name\n    assert scm.resolve_rev(ref_info.name) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_subrepo_test_subrepo.assert_scm_resolve_rev_re": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_subrepo_test_subrepo.assert_scm_resolve_rev_re", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 519, "end_line": 561, "span_ids": ["test_subrepo"], "tokens": 316}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_subrepo(tmp_dir, scm, workspace):\n    from tests.unit.tree.test_repo import make_subrepo\n\n    subrepo = tmp_dir / \"dir\" / \"repo\"\n    make_subrepo(subrepo, scm)\n\n    subrepo.gen(\"copy.py\", COPY_SCRIPT)\n    subrepo.gen(\"params.yaml\", \"foo: 1\")\n\n    with subrepo.chdir():\n        subrepo.dvc.run(\n            cmd=\"python copy.py params.yaml metrics.yaml\",\n            metrics_no_cache=[\"metrics.yaml\"],\n            params=[\"foo\"],\n            name=\"copy-file\",\n            no_exec=True,\n        )\n        scm.add(\n            [\n                subrepo / \"dvc.yaml\",\n                subrepo / \"copy.py\",\n                subrepo / \"params.yaml\",\n            ]\n        )\n        scm.commit(\"init\")\n\n        results = subrepo.dvc.experiments.run(\n            PIPELINE_FILE, params=[\"foo=2\"], tmp_dir=not workspace\n        )\n        assert results\n\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    tree = scm.get_tree(exp)\n    for fname in [\"metrics.yaml\", \"dvc.lock\"]:\n        assert tree.exists(subrepo / fname)\n    with tree.open(subrepo / \"metrics.yaml\") as fobj:\n        assert fobj.read().strip() == \"foo: 2\"\n\n    assert subrepo.dvc.experiments.get_exact_name(exp) == ref_info.name\n    assert scm.resolve_rev(ref_info.name) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_queue_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_experiments.py_test_queue_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 564, "end_line": 581, "span_ids": ["test_queue"], "tokens": 184}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_queue(tmp_dir, scm, dvc, exp_stage, mocker):\n    dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"], queue=True)\n    dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"], queue=True)\n    assert len(dvc.experiments.stash_revs) == 2\n\n    repro_mock = mocker.spy(dvc.experiments, \"_reproduce_revs\")\n    results = dvc.experiments.run(run_all=True)\n    assert len(results) == 2\n    repro_mock.assert_called_with(jobs=1)\n\n    expected = {\"foo: 2\", \"foo: 3\"}\n    metrics = set()\n    for exp in results:\n        tree = scm.get_tree(exp)\n        with tree.open(tmp_dir / \"metrics.yaml\") as fobj:\n            metrics.add(fobj.read().strip())\n    assert expected == metrics", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_os_git_downstream.return.erepo_dir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_os_git_downstream.return.erepo_dir", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["imports", "git_upstream", "git_downstream"], "tokens": 176}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\nfrom funcy import first\n\nfrom dvc.exceptions import DvcException\nfrom dvc.repo.experiments.utils import exp_refs_by_rev\n\n\n@pytest.fixture\ndef git_upstream(tmp_dir, erepo_dir):\n    url = \"file://{}\".format(erepo_dir.resolve().as_posix())\n    tmp_dir.scm.gitpython.repo.create_remote(\"upstream\", url)\n    erepo_dir.remote = \"upstream\"\n    erepo_dir.url = url\n    return erepo_dir\n\n\n@pytest.fixture\ndef git_downstream(tmp_dir, erepo_dir):\n    url = \"file://{}\".format(tmp_dir.resolve().as_posix())\n    erepo_dir.scm.gitpython.repo.create_remote(\"upstream\", url)\n    erepo_dir.remote = \"upstream\"\n    erepo_dir.url = url\n    return erepo_dir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_test_push.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_test_push.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 28, "end_line": 46, "span_ids": ["test_push"], "tokens": 185}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_url\", [True, False])\ndef test_push(tmp_dir, scm, dvc, git_upstream, exp_stage, use_url):\n    from dvc.exceptions import InvalidArgumentError\n\n    remote = git_upstream.url if use_url else git_upstream.remote\n    with pytest.raises(InvalidArgumentError):\n        dvc.experiments.push(remote, \"foo\")\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    dvc.experiments.push(remote, ref_info.name)\n    assert git_upstream.scm.get_ref(str(ref_info)) == exp\n\n    git_upstream.scm.remove_ref(str(ref_info))\n\n    dvc.experiments.push(remote, str(ref_info))\n    assert git_upstream.scm.get_ref(str(ref_info)) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_diverged_test_push_diverged.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_diverged_test_push_diverged.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 49, "end_line": 64, "span_ids": ["test_push_diverged"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_diverged(tmp_dir, scm, dvc, git_upstream, exp_stage):\n    git_upstream.scm_gen(\"foo\", \"foo\", commit=\"init\")\n    remote_rev = git_upstream.scm.get_rev()\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    git_upstream.scm.set_ref(str(ref_info), remote_rev)\n\n    with pytest.raises(DvcException):\n        dvc.experiments.push(git_upstream.remote, ref_info.name)\n    assert git_upstream.scm.get_ref(str(ref_info)) == remote_rev\n\n    dvc.experiments.push(git_upstream.remote, ref_info.name, force=True)\n    assert git_upstream.scm.get_ref(str(ref_info)) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_checkpoint_test_push_checkpoint.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_checkpoint_test_push_checkpoint.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 67, "end_line": 86, "span_ids": ["test_push_checkpoint"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_checkpoint(tmp_dir, scm, dvc, git_upstream, checkpoint_stage):\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"]\n    )\n    exp_a = first(results)\n    ref_info_a = first(exp_refs_by_rev(scm, exp_a))\n\n    dvc.experiments.push(git_upstream.remote, ref_info_a.name, force=True)\n    assert git_upstream.scm.get_ref(str(ref_info_a)) == exp_a\n\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, checkpoint_resume=exp_a\n    )\n    exp_b = first(results)\n    ref_info_b = first(exp_refs_by_rev(scm, exp_b))\n\n    tmp_dir.scm_gen(\"new\", \"new\", commit=\"new\")\n\n    dvc.experiments.push(git_upstream.remote, ref_info_b.name, force=True)\n    assert git_upstream.scm.get_ref(str(ref_info_b)) == exp_b", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_ambiguous_name_test_push_ambiguous_name.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_ambiguous_name_test_push_ambiguous_name.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 89, "end_line": 116, "span_ids": ["test_push_ambiguous_name"], "tokens": 254}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_ambiguous_name(tmp_dir, scm, dvc, git_upstream, exp_stage):\n    from dvc.exceptions import InvalidArgumentError\n\n    remote = git_upstream.remote\n\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], name=\"foo\"\n    )\n    exp_a = first(results)\n    ref_info_a = first(exp_refs_by_rev(scm, exp_a))\n\n    tmp_dir.scm_gen(\"new\", \"new\", commit=\"new\")\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=3\"], name=\"foo\"\n    )\n    exp_b = first(results)\n    ref_info_b = first(exp_refs_by_rev(scm, exp_b))\n\n    dvc.experiments.push(remote, \"foo\")\n    assert git_upstream.scm.get_ref(str(ref_info_b)) == exp_b\n\n    tmp_dir.scm_gen(\"new\", \"new 2\", commit=\"new 2\")\n\n    with pytest.raises(InvalidArgumentError):\n        dvc.experiments.push(remote, \"foo\")\n\n    dvc.experiments.push(remote, str(ref_info_a))\n    assert git_upstream.scm.get_ref(str(ref_info_a)) == exp_a", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_list_remote_test_list_remote.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_list_remote_test_list_remote.None_3", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 119, "end_line": 151, "span_ids": ["test_list_remote"], "tokens": 368}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_url\", [True, False])\ndef test_list_remote(tmp_dir, scm, dvc, git_downstream, exp_stage, use_url):\n    baseline_a = scm.get_rev()\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp_a = first(results)\n    ref_info_a = first(exp_refs_by_rev(scm, exp_a))\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=3\"])\n    exp_b = first(results)\n    ref_info_b = first(exp_refs_by_rev(scm, exp_b))\n\n    tmp_dir.scm_gen(\"new\", \"new\", commit=\"new\")\n    baseline_c = scm.get_rev()\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=4\"])\n    exp_c = first(results)\n    ref_info_c = first(exp_refs_by_rev(scm, exp_c))\n\n    remote = git_downstream.url if use_url else git_downstream.remote\n\n    assert git_downstream.scm.get_ref(\"HEAD\") != scm.get_ref(\"HEAD\")\n    downstream_exp = git_downstream.dvc.experiments\n    assert downstream_exp.ls(git_remote=remote) == {}\n\n    exp_list = downstream_exp.ls(rev=baseline_a, git_remote=remote)\n    assert {key: set(val) for key, val in exp_list.items()} == {\n        baseline_a: {ref_info_a.name, ref_info_b.name}\n    }\n\n    exp_list = downstream_exp.ls(all_=True, git_remote=remote)\n    assert {key: set(val) for key, val in exp_list.items()} == {\n        baseline_a: {ref_info_a.name, ref_info_b.name},\n        baseline_c: {ref_info_c.name},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_test_pull.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_test_pull.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 154, "end_line": 173, "span_ids": ["test_pull"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_url\", [True, False])\ndef test_pull(tmp_dir, scm, dvc, git_downstream, exp_stage, use_url):\n    from dvc.exceptions import InvalidArgumentError\n\n    remote = git_downstream.url if use_url else git_downstream.remote\n    downstream_exp = git_downstream.dvc.experiments\n    with pytest.raises(InvalidArgumentError):\n        downstream_exp.pull(remote, \"foo\")\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    downstream_exp.pull(remote, ref_info.name)\n    assert git_downstream.scm.get_ref(str(ref_info)) == exp\n\n    git_downstream.scm.remove_ref(str(ref_info))\n\n    downstream_exp.pull(remote, str(ref_info))\n    assert git_downstream.scm.get_ref(str(ref_info)) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_diverged_test_pull_diverged.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_diverged_test_pull_diverged.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 176, "end_line": 192, "span_ids": ["test_pull_diverged"], "tokens": 186}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_diverged(tmp_dir, scm, dvc, git_downstream, exp_stage):\n    git_downstream.scm_gen(\"foo\", \"foo\", commit=\"init\")\n    remote_rev = git_downstream.scm.get_rev()\n\n    results = dvc.experiments.run(exp_stage.addressing, params=[\"foo=2\"])\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    git_downstream.scm.set_ref(str(ref_info), remote_rev)\n\n    downstream_exp = git_downstream.dvc.experiments\n    with pytest.raises(DvcException):\n        downstream_exp.pull(git_downstream.remote, ref_info.name)\n    assert git_downstream.scm.get_ref(str(ref_info)) == remote_rev\n\n    downstream_exp.pull(git_downstream.remote, ref_info.name, force=True)\n    assert git_downstream.scm.get_ref(str(ref_info)) == exp", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_checkpoint_test_pull_checkpoint.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_checkpoint_test_pull_checkpoint.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 195, "end_line": 213, "span_ids": ["test_pull_checkpoint"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_checkpoint(tmp_dir, scm, dvc, git_downstream, checkpoint_stage):\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"]\n    )\n    exp_a = first(results)\n    ref_info_a = first(exp_refs_by_rev(scm, exp_a))\n\n    downstream_exp = git_downstream.dvc.experiments\n    downstream_exp.pull(git_downstream.remote, ref_info_a.name, force=True)\n    assert git_downstream.scm.get_ref(str(ref_info_a)) == exp_a\n\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, checkpoint_resume=exp_a\n    )\n    exp_b = first(results)\n    ref_info_b = first(exp_refs_by_rev(scm, exp_b))\n\n    downstream_exp.pull(git_downstream.remote, ref_info_b.name, force=True)\n    assert git_downstream.scm.get_ref(str(ref_info_b)) == exp_b", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_ambiguous_name_test_pull_ambiguous_name.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_pull_ambiguous_name_test_pull_ambiguous_name.None_1", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 216, "end_line": 242, "span_ids": ["test_pull_ambiguous_name"], "tokens": 256}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_ambiguous_name(tmp_dir, scm, dvc, git_downstream, exp_stage):\n    from dvc.exceptions import InvalidArgumentError\n\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=2\"], name=\"foo\"\n    )\n    exp_a = first(results)\n    ref_info_a = first(exp_refs_by_rev(scm, exp_a))\n\n    tmp_dir.scm_gen(\"new\", \"new\", commit=\"new\")\n    results = dvc.experiments.run(\n        exp_stage.addressing, params=[\"foo=3\"], name=\"foo\"\n    )\n    exp_b = first(results)\n    ref_info_b = first(exp_refs_by_rev(scm, exp_b))\n\n    remote = git_downstream.remote\n    downstream_exp = git_downstream.dvc.experiments\n    with pytest.raises(InvalidArgumentError):\n        downstream_exp.pull(remote, \"foo\")\n\n    downstream_exp.pull(remote, str(ref_info_b))\n    assert git_downstream.scm.get_ref(str(ref_info_b)) == exp_b\n\n    with git_downstream.scm.detach_head(ref_info_a.baseline_sha):\n        downstream_exp.pull(remote, \"foo\")\n    assert git_downstream.scm.get_ref(str(ref_info_a)) == exp_a", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_pull_cache_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_remote.py_test_push_pull_cache_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_remote.py", "file_name": "test_remote.py", "file_type": "text/x-python", "category": "test", "start_line": 245, "end_line": 273, "span_ids": ["test_push_pull_cache"], "tokens": 251}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_pull_cache(\n    tmp_dir, scm, dvc, git_upstream, checkpoint_stage, local_remote\n):\n    from dvc.utils.fs import remove\n    from tests.func.test_diff import digest\n\n    remote = git_upstream.remote\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"]\n    )\n    exp = first(results)\n    ref_info = first(exp_refs_by_rev(scm, exp))\n\n    dvc.experiments.push(remote, ref_info.name, push_cache=True)\n    for x in range(2, 6):\n        hash_ = digest(str(x))\n        path = os.path.join(local_remote.url, hash_[:2], hash_[2:])\n        assert os.path.exists(path)\n        assert open(path).read() == str(x)\n\n    remove(dvc.cache.local.cache_dir)\n\n    dvc.experiments.pull(remote, ref_info.name, pull_cache=True)\n    for x in range(2, 6):\n        hash_ = digest(str(x))\n        path = os.path.join(dvc.cache.local.cache_dir, hash_[:2], hash_[2:])\n        assert os.path.exists(path)\n        assert open(path).read() == str(x)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_os_test_show_simple.assert_dvc_experiments_sh": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_os_test_show_simple.assert_dvc_experiments_sh", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 19, "span_ids": ["imports", "test_show_simple"], "tokens": 112}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom datetime import datetime\n\nimport pytest\nfrom funcy import first\n\nfrom dvc.main import main\nfrom dvc.repo.experiments.base import ExpRefInfo\n\n\ndef test_show_simple(tmp_dir, scm, dvc, exp_stage):\n    assert dvc.experiments.show()[\"workspace\"] == {\n        \"baseline\": {\n            \"metrics\": {\"metrics.yaml\": {\"foo\": 1}},\n            \"params\": {\"params.yaml\": {\"foo\": 1}},\n            \"queued\": False,\n            \"timestamp\": None,\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_checkpoint_test_show_checkpoint.for_i_rev_in_enumerate_c.assert_f_tree_name_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_checkpoint_test_show_checkpoint.for_i_rev_in_enumerate_c.assert_f_tree_name_i", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 84, "end_line": 117, "span_ids": ["test_show_checkpoint"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_show_checkpoint(\n    tmp_dir, scm, dvc, checkpoint_stage, capsys, workspace\n):\n    baseline_rev = scm.get_rev()\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    exp_rev = first(results)\n\n    results = dvc.experiments.show()[baseline_rev]\n    assert len(results) == 6\n\n    checkpoints = []\n    for rev, exp in results.items():\n        if rev != \"baseline\":\n            checkpoints.append(rev)\n            assert exp[\"checkpoint_tip\"] == exp_rev\n\n    capsys.readouterr()\n    assert main([\"exp\", \"show\", \"--no-pager\"]) == 0\n    cap = capsys.readouterr()\n\n    for i, rev in enumerate(checkpoints):\n        if i == 0:\n            name = dvc.experiments.get_exact_name(rev)\n            tree = \"\u2553\"\n        elif i == len(checkpoints) - 1:\n            name = rev[:7]\n            tree = \"\u2568\"\n        else:\n            name = rev[:7]\n            tree = \"\u255f\"\n        assert f\"{tree} {name}\" in cap.out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_checkpoint_branch_test_show_checkpoint_branch.assert_f_branch_rev_7_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_checkpoint_branch_test_show_checkpoint_branch.assert_f_branch_rev_7_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 120, "end_line": 156, "span_ids": ["test_show_checkpoint_branch"], "tokens": 285}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"workspace\", [True, False])\ndef test_show_checkpoint_branch(\n    tmp_dir, scm, dvc, checkpoint_stage, capsys, workspace\n):\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing, params=[\"foo=2\"], tmp_dir=not workspace\n    )\n    branch_rev = first(results)\n    if not workspace:\n        dvc.experiments.apply(branch_rev)\n\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing,\n        checkpoint_resume=branch_rev,\n        tmp_dir=not workspace,\n    )\n    checkpoint_a = first(results)\n\n    dvc.experiments.apply(branch_rev, force=True)\n    results = dvc.experiments.run(\n        checkpoint_stage.addressing,\n        checkpoint_resume=branch_rev,\n        params=[\"foo=100\"],\n        tmp_dir=not workspace,\n    )\n    checkpoint_b = first(results)\n\n    capsys.readouterr()\n    assert main([\"exp\", \"show\", \"--no-pager\"]) == 0\n    cap = capsys.readouterr()\n\n    for rev in (checkpoint_a, checkpoint_b):\n        ref = dvc.experiments.get_branch_by_rev(rev)\n        ref_info = ExpRefInfo.from_ref(ref)\n        name = ref_info.name\n        assert f\"\u2553 {name}\" in cap.out\n    assert f\"({branch_rev[:7]})\" in cap.out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_filter_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/experiments/test_show.py_test_show_filter_", "embedding": null, "metadata": {"file_path": "tests/func/experiments/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 159, "end_line": 195, "span_ids": ["test_show_filter"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_filter(tmp_dir, scm, dvc, exp_stage, capsys):\n    capsys.readouterr()\n    assert (\n        main(\n            [\n                \"exp\",\n                \"show\",\n                \"--no-pager\",\n                \"--no-timestamp\",\n                \"--include-metrics=foo\",\n                \"--include-params=foo\",\n            ]\n        )\n        == 0\n    )\n    cap = capsys.readouterr()\n\n    div = \"\u2502\" if os.name == \"nt\" else \"\u2503\"\n    assert f\"{div} foo {div} foo {div}\" in cap.out\n\n    assert (\n        main(\n            [\n                \"exp\",\n                \"show\",\n                \"--no-pager\",\n                \"--no-timestamp\",\n                \"--exclude-metrics=foo\",\n                \"--exclude-params=foo\",\n            ]\n        )\n        == 0\n    )\n    cap = capsys.readouterr()\n\n    assert f\"{div} foo {div}\" not in cap.out", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_json_test_metrics_diff_simple.assert_dvc_metrics_diff_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_json_test_metrics_diff_simple.assert_dvc_metrics_diff_a", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 20, "span_ids": ["imports", "test_metrics_diff_simple"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport logging\n\nfrom dvc.main import main\nfrom dvc.utils.serialize import dump_yaml\n\n\ndef test_metrics_diff_simple(tmp_dir, scm, dvc, run_copy_metrics):\n    def _gen(val):\n        tmp_dir.gen({\"m_temp.yaml\": str(val)})\n        run_copy_metrics(\"m_temp.yaml\", \"m.yaml\", metrics=[\"m.yaml\"])\n        dvc.scm.commit(str(val))\n\n    _gen(1)\n    _gen(2)\n    _gen(3)\n\n    expected = {\"m.yaml\": {\"\": {\"old\": 1, \"new\": 3, \"diff\": 2}}}\n\n    assert dvc.metrics.diff(a_rev=\"HEAD~2\") == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_yaml_test_metrics_diff_yaml.assert_dvc_metrics_diff_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_yaml_test_metrics_diff_yaml.assert_dvc_metrics_diff_a", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 23, "end_line": 37, "span_ids": ["test_metrics_diff_yaml"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_yaml(tmp_dir, scm, dvc, run_copy_metrics):\n    def _gen(val):\n        metrics = {\"a\": {\"b\": {\"c\": val, \"d\": 1, \"e\": str(val)}}}\n        dump_yaml(\"m_temp.yaml\", metrics)\n        run_copy_metrics(\n            \"m_temp.yaml\", \"m.yaml\", metrics=[\"m.yaml\"], commit=str(val)\n        )\n\n    _gen(1)\n    _gen(2)\n    _gen(3)\n\n    expected = {\"m.yaml\": {\"a.b.c\": {\"old\": 1, \"new\": 3, \"diff\": 2}}}\n\n    assert dvc.metrics.diff(a_rev=\"HEAD~2\") == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_json_test_metrics_diff_json.assert_dvc_metrics_diff_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_json_test_metrics_diff_json.assert_dvc_metrics_diff_a", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 40, "end_line": 53, "span_ids": ["test_metrics_diff_json"], "tokens": 153}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_json(tmp_dir, scm, dvc, run_copy_metrics):\n    def _gen(val):\n        metrics = {\"a\": {\"b\": {\"c\": val, \"d\": 1, \"e\": str(val)}}}\n        tmp_dir.gen({\"m_temp.json\": json.dumps(metrics)})\n        run_copy_metrics(\n            \"m_temp.json\", \"m.json\", metrics=[\"m.json\"], commit=str(val)\n        )\n\n    _gen(1)\n    _gen(2)\n    _gen(3)\n\n    expected = {\"m.json\": {\"a.b.c\": {\"old\": 1, \"new\": 3, \"diff\": 2}}}\n    assert dvc.metrics.diff(a_rev=\"HEAD~2\") == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_json_unchanged_test_metrics_diff_json_unchanged.assert_dvc_metrics_diff_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_json_unchanged_test_metrics_diff_json_unchanged.assert_dvc_metrics_diff_a", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 56, "end_line": 68, "span_ids": ["test_metrics_diff_json_unchanged"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_json_unchanged(tmp_dir, scm, dvc, run_copy_metrics):\n    def _gen(val):\n        metrics = {\"a\": {\"b\": {\"c\": val, \"d\": 1, \"e\": str(val)}}}\n        tmp_dir.gen({\"m_temp.json\": json.dumps(metrics)})\n        run_copy_metrics(\n            \"m_temp.json\", \"m.json\", metrics=[\"m.json\"], commit=str(val)\n        )\n\n    _gen(1)\n    _gen(2)\n    _gen(1)\n\n    assert dvc.metrics.diff(a_rev=\"HEAD~2\") == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_broken_json_test_metrics_diff_broken_json.assert_dvc_metrics_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_broken_json_test_metrics_diff_broken_json.assert_dvc_metrics_diff_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 71, "end_line": 88, "span_ids": ["test_metrics_diff_broken_json"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_broken_json(tmp_dir, scm, dvc, run_copy_metrics):\n    metrics = {\"a\": {\"b\": {\"c\": 1, \"d\": 1, \"e\": \"3\"}}}\n    tmp_dir.gen({\"m_temp.json\": json.dumps(metrics)})\n    run_copy_metrics(\n        \"m_temp.json\",\n        \"m.json\",\n        metrics_no_cache=[\"m.json\"],\n        commit=\"add metrics\",\n    )\n\n    (tmp_dir / \"m.json\").write_text(json.dumps(metrics) + \"ma\\nlformed\\n\")\n\n    assert dvc.metrics.diff() == {\n        \"m.json\": {\n            \"a.b.c\": {\"old\": 1, \"new\": None},\n            \"a.b.d\": {\"old\": 1, \"new\": None},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_no_metrics_test_metrics_diff_new_metric.assert_dvc_metrics_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_no_metrics_test_metrics_diff_new_metric.assert_dvc_metrics_diff_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 91, "end_line": 106, "span_ids": ["test_metrics_diff_no_metrics", "test_metrics_diff_new_metric"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_no_metrics(tmp_dir, scm, dvc):\n    tmp_dir.scm_gen({\"foo\": \"foo\"}, commit=\"add foo\")\n    assert dvc.metrics.diff(a_rev=\"HEAD~1\") == {}\n\n\ndef test_metrics_diff_new_metric(tmp_dir, scm, dvc, run_copy_metrics):\n    metrics = {\"a\": {\"b\": {\"c\": 1, \"d\": 1, \"e\": \"3\"}}}\n    tmp_dir.gen({\"m_temp.json\": json.dumps(metrics)})\n    run_copy_metrics(\"m_temp.json\", \"m.json\", metrics_no_cache=[\"m.json\"])\n\n    assert dvc.metrics.diff() == {\n        \"m.json\": {\n            \"a.b.c\": {\"old\": None, \"new\": 1},\n            \"a.b.d\": {\"old\": None, \"new\": 1},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_deleted_metric_test_metrics_diff_deleted_metric.assert_dvc_metrics_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_deleted_metric_test_metrics_diff_deleted_metric.assert_dvc_metrics_diff_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 109, "end_line": 126, "span_ids": ["test_metrics_diff_deleted_metric"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_deleted_metric(tmp_dir, scm, dvc, run_copy_metrics):\n    metrics = {\"a\": {\"b\": {\"c\": 1, \"d\": 1, \"e\": \"3\"}}}\n    tmp_dir.gen({\"m_temp.json\": json.dumps(metrics)})\n    run_copy_metrics(\n        \"m_temp.json\",\n        \"m.json\",\n        metrics_no_cache=[\"m.json\"],\n        commit=\"add metrics\",\n    )\n\n    (tmp_dir / \"m.json\").unlink()\n\n    assert dvc.metrics.diff() == {\n        \"m.json\": {\n            \"a.b.c\": {\"old\": 1, \"new\": None},\n            \"a.b.d\": {\"old\": 1, \"new\": None},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_with_unchanged_test_metrics_diff_with_unchanged.assert_dvc_metrics_diff_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_with_unchanged_test_metrics_diff_with_unchanged.assert_dvc_metrics_diff_a", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 129, "end_line": 146, "span_ids": ["test_metrics_diff_with_unchanged"], "tokens": 193}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_with_unchanged(tmp_dir, scm, dvc, run_copy_metrics):\n    tmp_dir.gen(\"metrics_temp.yaml\", \"foo: 1\\nxyz: 10\")\n    run_copy_metrics(\n        \"metrics_temp.yaml\",\n        \"metrics.yaml\",\n        metrics_no_cache=[\"metrics.yaml\"],\n        commit=\"1\",\n    )\n\n    tmp_dir.scm_gen(\"metrics.yaml\", \"foo: 2\\nxyz: 10\", commit=\"2\")\n    tmp_dir.scm_gen(\"metrics.yaml\", \"foo: 3\\nxyz: 10\", commit=\"3\")\n\n    assert dvc.metrics.diff(a_rev=\"HEAD~2\", all=True) == {\n        \"metrics.yaml\": {\n            \"foo\": {\"old\": 1, \"new\": 3, \"diff\": 2},\n            \"xyz\": {\"old\": 10, \"new\": 10, \"diff\": 0},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_no_commits_test_metrics_diff_dirty.assert_dvc_metrics_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_no_commits_test_metrics_diff_dirty.assert_dvc_metrics_diff_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 149, "end_line": 174, "span_ids": ["test_metrics_diff_dirty", "test_no_commits"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_commits(tmp_dir):\n    from dvc.repo import Repo\n    from dvc.scm.git import Git\n    from tests.dir_helpers import git_init\n\n    git_init(\".\")\n    assert Git().no_commits\n\n    assert Repo.init().metrics.diff() == {}\n\n\ndef test_metrics_diff_dirty(tmp_dir, scm, dvc, run_copy_metrics):\n    def _gen(val):\n        tmp_dir.gen({\"m_temp.yaml\": str(val)})\n        run_copy_metrics(\"m_temp.yaml\", \"m.yaml\", metrics=[\"m.yaml\"])\n        dvc.scm.commit(str(val))\n\n    _gen(1)\n    _gen(2)\n    _gen(3)\n\n    tmp_dir.gen({\"m.yaml\": \"4\"})\n\n    expected = {\"m.yaml\": {\"\": {\"old\": 3, \"new\": 4, \"diff\": 1}}}\n\n    assert dvc.metrics.diff() == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_cli_test_metrics_diff_cli.assert_info_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_cli_test_metrics_diff_cli.assert_info_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 177, "end_line": 197, "span_ids": ["test_metrics_diff_cli"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_cli(tmp_dir, scm, dvc, run_copy_metrics, caplog, capsys):\n    def _gen(val):\n        tmp_dir.gen({\"m_temp.yaml\": f\"foo: {val}\"})\n        run_copy_metrics(\"m_temp.yaml\", \"m.yaml\", metrics=[\"m.yaml\"])\n        dvc.scm.commit(str(val))\n\n    _gen(1.23456789)\n    _gen(2.34567891011)\n    _gen(3.45678910111213)\n\n    caplog.clear()\n    assert main([\"metrics\", \"diff\", \"HEAD~2\"]) == 0\n    (info,) = [\n        msg\n        for name, level, msg in caplog.record_tuples\n        if name.startswith(\"dvc\") and level == logging.INFO\n    ]\n    assert info == (\n        \"Path    Metric    Old      New      Change\\n\"\n        \"m.yaml  foo       1.23457  3.45679  2.22222\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_non_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_diff.py_test_metrics_diff_non_metrics_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 200, "end_line": 212, "span_ids": ["test_metrics_diff_non_metrics"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_diff_non_metrics(tmp_dir, scm, dvc):\n    def _gen(val):\n        tmp_dir.scm_gen({\"some_file.yaml\": f\"foo: {val}\"}, commit=str(val))\n\n    _gen(1)\n    _gen(2)\n    _gen(3)\n\n    result = dvc.metrics.diff(targets=[\"some_file.yaml\"], a_rev=\"HEAD~2\")\n    assert result == {\n        \"some_file.yaml\": {\"foo\": {\"old\": 1, \"new\": 3, \"diff\": 2}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_os_test_show.assert_dvc_metrics_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_os_test_show.assert_dvc_metrics_show_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 30, "span_ids": ["imports", "test_show_simple", "test_show"], "tokens": 218}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.exceptions import (\n    MetricDoesNotExistError,\n    NoMetricsFoundError,\n    NoMetricsParsedError,\n    OverlappingOutputPathsError,\n)\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\nfrom dvc.utils.fs import remove\nfrom dvc.utils.serialize import dump_yaml, modify_yaml\n\n\ndef test_show_simple(tmp_dir, dvc, run_copy_metrics):\n    tmp_dir.gen(\"metrics_t.yaml\", \"1.1\")\n    run_copy_metrics(\n        \"metrics_t.yaml\", \"metrics.yaml\", metrics=[\"metrics.yaml\"],\n    )\n    assert dvc.metrics.show() == {\"\": {\"metrics.yaml\": 1.1}}\n\n\ndef test_show(tmp_dir, dvc, run_copy_metrics):\n    tmp_dir.gen(\"metrics_t.yaml\", \"foo: 1.1\")\n    run_copy_metrics(\n        \"metrics_t.yaml\", \"metrics.yaml\", metrics=[\"metrics.yaml\"],\n    )\n    assert dvc.metrics.show() == {\"\": {\"metrics.yaml\": {\"foo\": 1.1}}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_multiple_test_show_multiple.assert_dvc_metrics_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_multiple_test_show_multiple.assert_dvc_metrics_show_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 33, "end_line": 38, "span_ids": ["test_show_multiple"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_multiple(tmp_dir, dvc, run_copy_metrics):\n    tmp_dir.gen(\"foo_temp\", \"foo: 1\\n\")\n    tmp_dir.gen(\"baz_temp\", \"baz: 2\\n\")\n    run_copy_metrics(\"foo_temp\", \"foo\", fname=\"foo.dvc\", metrics=[\"foo\"])\n    run_copy_metrics(\"baz_temp\", \"baz\", fname=\"baz.dvc\", metrics=[\"baz\"])\n    assert dvc.metrics.show() == {\"\": {\"foo\": {\"foo\": 1}, \"baz\": {\"baz\": 2}}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_branch_test_show_branch.assert_dvc_metrics_show_r": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_branch_test_show_branch.assert_dvc_metrics_show_r", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 55, "span_ids": ["test_show_branch"], "tokens": 148}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_branch(tmp_dir, scm, dvc, run_copy_metrics):\n    tmp_dir.gen(\"metrics_temp.yaml\", \"foo: 1\")\n    run_copy_metrics(\n        \"metrics_temp.yaml\", \"metrics.yaml\", metrics_no_cache=[\"metrics.yaml\"]\n    )\n    scm.add([\"metrics.yaml\", \"metrics.yaml.dvc\"])\n    scm.commit(\"init\")\n\n    with tmp_dir.branch(\"branch\", new=True):\n        tmp_dir.scm_gen(\"metrics.yaml\", \"foo: 2\", commit=\"branch\")\n\n    assert dvc.metrics.show(revs=[\"branch\"]) == {\n        \"workspace\": {\"metrics.yaml\": {\"foo\": 1}},\n        \"branch\": {\"metrics.yaml\": {\"foo\": 2}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_subrepo_with_preexisting_tags_test_show_subrepo_with_preexisting_tags.assert_dvc_metrics_show_a": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_subrepo_with_preexisting_tags_test_show_subrepo_with_preexisting_tags.assert_dvc_metrics_show_a", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 58, "end_line": 89, "span_ids": ["test_show_subrepo_with_preexisting_tags"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_subrepo_with_preexisting_tags(tmp_dir, scm):\n    tmp_dir.gen(\"foo\", \"foo\")\n    scm.add(\"foo\")\n    scm.commit(\"init\")\n    scm.tag(\"no-metrics\")\n\n    tmp_dir.gen({\"subdir\": {}})\n    subrepo_dir = tmp_dir / \"subdir\"\n    with subrepo_dir.chdir():\n        dvc = Repo.init(subdir=True)\n        scm.commit(\"init dvc\")\n\n        dvc.run(\n            cmd=\"echo foo: 1 > metrics.yaml\",\n            metrics=[\"metrics.yaml\"],\n            single_stage=True,\n        )\n\n    scm.add(\n        [\n            str(subrepo_dir / \"metrics.yaml\"),\n            str(subrepo_dir / \"metrics.yaml.dvc\"),\n        ]\n    )\n    scm.commit(\"init metrics\")\n    scm.tag(\"v1\")\n\n    expected_path = os.path.join(\"subdir\", \"metrics.yaml\")\n    assert dvc.metrics.show(all_tags=True) == {\n        \"workspace\": {expected_path: {\"foo\": 1}},\n        \"v1\": {expected_path: {\"foo\": 1}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_missing_cache_test_missing_cache.assert_dvc_metrics_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_missing_cache_test_missing_cache.assert_dvc_metrics_show_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 92, "end_line": 105, "span_ids": ["test_missing_cache"], "tokens": 125}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_missing_cache(tmp_dir, dvc, run_copy_metrics):\n    tmp_dir.gen(\"metrics_t.yaml\", \"1.1\")\n    run_copy_metrics(\n        \"metrics_t.yaml\", \"metrics.yaml\", metrics=[\"metrics.yaml\"],\n    )\n\n    # This one should be skipped\n    stage = run_copy_metrics(\n        \"metrics_t.yaml\", \"metrics2.yaml\", metrics=[\"metrics2.yaml\"],\n    )\n    remove(stage.outs[0].fspath)\n    remove(stage.outs[0].cache_path)\n\n    assert dvc.metrics.show() == {\"\": {\"metrics.yaml\": 1.1}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_non_metric_test_show_non_metric.if_not_use_dvc_.assert_not_tmp_dir_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_non_metric_test_show_non_metric.if_not_use_dvc_.assert_not_tmp_dir_d", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 108, "end_line": 122, "span_ids": ["test_show_non_metric"], "tokens": 118}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_dvc\", [True, False])\ndef test_show_non_metric(tmp_dir, scm, use_dvc):\n    tmp_dir.gen(\"metrics.yaml\", \"foo: 1.1\")\n\n    if use_dvc:\n        dvc = Repo.init()\n    else:\n        dvc = Repo(uninitialized=True)\n\n    assert dvc.metrics.show(targets=[\"metrics.yaml\"]) == {\n        \"\": {\"metrics.yaml\": {\"foo\": 1.1}}\n    }\n\n    if not use_dvc:\n        assert not (tmp_dir / \".dvc\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_non_metric_branch_test_show_non_metric_branch.if_not_use_dvc_.assert_not_tmp_dir_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_non_metric_branch_test_show_non_metric_branch.if_not_use_dvc_.assert_not_tmp_dir_d", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 125, "end_line": 142, "span_ids": ["test_show_non_metric_branch"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_dvc\", [True, False])\ndef test_show_non_metric_branch(tmp_dir, scm, use_dvc):\n    tmp_dir.scm_gen(\"metrics.yaml\", \"foo: 1.1\", commit=\"init\")\n    with tmp_dir.branch(\"branch\", new=True):\n        tmp_dir.scm_gen(\"metrics.yaml\", \"foo: 2.2\", commit=\"other\")\n\n    if use_dvc:\n        dvc = Repo.init()\n    else:\n        dvc = Repo(uninitialized=True)\n\n    assert dvc.metrics.show(targets=[\"metrics.yaml\"], revs=[\"branch\"]) == {\n        \"workspace\": {\"metrics.yaml\": {\"foo\": 1.1}},\n        \"branch\": {\"metrics.yaml\": {\"foo\": 2.2}},\n    }\n\n    if not use_dvc:\n        assert not (tmp_dir / \".dvc\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_non_metric_and_recurisve_show_test_non_metric_and_recurisve_show.assert_dvc_metrics_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_non_metric_and_recurisve_show_test_non_metric_and_recurisve_show.assert_dvc_metrics_show_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 145, "end_line": 161, "span_ids": ["test_non_metric_and_recurisve_show"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_non_metric_and_recurisve_show(tmp_dir, dvc, run_copy_metrics):\n    tmp_dir.gen(\n        {\"metrics_t.yaml\": \"foo: 1.1\", \"metrics\": {\"metric1.yaml\": \"bar: 1.2\"}}\n    )\n\n    metric2 = os.fspath(tmp_dir / \"metrics\" / \"metric2.yaml\")\n    run_copy_metrics(\"metrics_t.yaml\", metric2, metrics=[metric2])\n\n    assert dvc.metrics.show(\n        targets=[\"metrics_t.yaml\", \"metrics\"], recursive=True\n    ) == {\n        \"\": {\n            os.path.join(\"metrics\", \"metric1.yaml\"): {\"bar\": 1.2},\n            os.path.join(\"metrics\", \"metric2.yaml\"): {\"foo\": 1.1},\n            \"metrics_t.yaml\": {\"foo\": 1.1},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_falsey_test_show_no_metrics_files.with_pytest_raises_NoMetr.dvc_metrics_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_show_falsey_test_show_no_metrics_files.with_pytest_raises_NoMetr.dvc_metrics_show_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 164, "end_line": 193, "span_ids": ["test_show_no_repo", "test_show_malformed_metric", "test_show_falsey", "test_metrics_show_no_target", "test_show_no_metrics_files"], "tokens": 247}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_falsey(tmp_dir, dvc):\n    tmp_dir.gen(\"metrics.json\", '{\"foo\": 0, \"bar\": 0.0, \"baz\": {}}')\n    assert dvc.metrics.show(targets=[\"metrics.json\"]) == {\n        \"\": {\"metrics.json\": {\"foo\": 0, \"bar\": 0.0}}\n    }\n\n\ndef test_show_no_repo(tmp_dir):\n    tmp_dir.gen(\"metrics.json\", '{\"foo\": 0, \"bar\": 0.0, \"baz\": {}}')\n\n    dvc = Repo(uninitialized=True)\n\n    dvc.metrics.show(targets=[\"metrics.json\"])\n\n\ndef test_show_malformed_metric(tmp_dir, scm, dvc, caplog):\n    tmp_dir.gen(\"metric.json\", '{\"m\":1')\n\n    with pytest.raises(NoMetricsParsedError):\n        dvc.metrics.show(targets=[\"metric.json\"])\n\n\ndef test_metrics_show_no_target(tmp_dir, dvc):\n    with pytest.raises(MetricDoesNotExistError):\n        dvc.metrics.show(targets=[\"metrics.json\"])\n\n\ndef test_show_no_metrics_files(tmp_dir, dvc, caplog):\n    with pytest.raises(NoMetricsFoundError):\n        dvc.metrics.show()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_metrics_show_overlap_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/metrics/test_show.py_test_metrics_show_overlap_", "embedding": null, "metadata": {"file_path": "tests/func/metrics/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 196, "end_line": 229, "span_ids": ["test_metrics_show_overlap"], "tokens": 261}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"clear_before_run\", [True, False])\ndef test_metrics_show_overlap(\n    tmp_dir, dvc, run_copy_metrics, clear_before_run\n):\n    data_dir = PathInfo(\"data\")\n    (tmp_dir / data_dir).mkdir()\n\n    dump_yaml(data_dir / \"m1_temp.yaml\", {\"a\": {\"b\": {\"c\": 2, \"d\": 1}}})\n    run_copy_metrics(\n        str(data_dir / \"m1_temp.yaml\"),\n        str(data_dir / \"m1.yaml\"),\n        single_stage=False,\n        commit=\"add m1\",\n        name=\"cp-m1\",\n        metrics=[str(data_dir / \"m1.yaml\")],\n    )\n    with modify_yaml(\"dvc.yaml\") as d:\n        # trying to make an output overlaps error\n        d[\"stages\"][\"corrupted-stage\"] = {\n            \"cmd\": \"mkdir data\",\n            \"outs\": [\"data\"],\n        }\n\n    # running by clearing and not clearing stuffs\n    # so as it works even for optimized cases\n    if clear_before_run:\n        remove(data_dir)\n        remove(dvc.cache.local.cache_dir)\n\n    dvc._reset()\n\n    with pytest.raises(OverlappingOutputPathsError):\n        dvc.metrics.show()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_from_dvc_utils_import_rel_test_diff_no_changes.assert_dvc_params_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_from_dvc_utils_import_rel_test_diff_no_changes.assert_dvc_params_diff_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 14, "span_ids": ["imports", "test_diff_no_changes", "test_diff_no_params"], "tokens": 110}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.utils import relpath\nfrom dvc.utils.serialize import dump_yaml\n\n\ndef test_diff_no_params(tmp_dir, scm, dvc):\n    assert dvc.params.diff() == {}\n\n\ndef test_diff_no_changes(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"bar\")\n    assert dvc.params.diff() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_test_diff.assert_dvc_params_diff_a_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_test_diff.assert_dvc_params_diff_a_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 17, "end_line": 28, "span_ids": ["test_diff"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff(tmp_dir, scm, dvc):\n    tmp_dir.gen(\"params.yaml\", \"foo: bar\")\n    dvc.run(cmd=\"echo params.yaml\", params=[\"foo\"], single_stage=True)\n    scm.add([\"params.yaml\", \"Dvcfile\"])\n    scm.commit(\"bar\")\n\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: baz\", commit=\"baz\")\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: qux\", commit=\"qux\")\n\n    assert dvc.params.diff(a_rev=\"HEAD~2\") == {\n        \"params.yaml\": {\"foo\": {\"old\": \"bar\", \"new\": \"qux\"}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_pipeline_tracked_params_test_no_commits.assert_Repo_init_params": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_pipeline_tracked_params_test_no_commits.assert_Repo_init_params", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 125, "end_line": 150, "span_ids": ["test_pipeline_tracked_params", "test_no_commits"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pipeline_tracked_params(tmp_dir, scm, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE\n\n    tmp_dir.gen({\"foo\": \"foo\", \"params.yaml\": \"foo: bar\\nxyz: val\"})\n    run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\", params=[\"foo,xyz\"])\n\n    scm.add([\"params.yaml\", PIPELINE_FILE])\n    scm.commit(\"add stage\")\n\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: baz\\nxyz: val\", commit=\"baz\")\n    tmp_dir.scm_gen(\"params.yaml\", \"foo: qux\\nxyz: val\", commit=\"qux\")\n\n    assert dvc.params.diff(a_rev=\"HEAD~2\") == {\n        \"params.yaml\": {\"foo\": {\"old\": \"bar\", \"new\": \"qux\"}}\n    }\n\n\ndef test_no_commits(tmp_dir):\n    from dvc.repo import Repo\n    from dvc.scm.git import Git\n    from tests.dir_helpers import git_init\n\n    git_init(\".\")\n    assert Git().no_commits\n\n    assert Repo.init().params.diff() == {}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_vars_shows_on_params_diff_test_vars_shows_on_params_diff.with_data_dir_chdir_.assert_dvc_params_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_vars_shows_on_params_diff_test_vars_shows_on_params_diff.with_data_dir_chdir_.assert_dvc_params_diff_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 153, "end_line": 191, "span_ids": ["test_vars_shows_on_params_diff"], "tokens": 339}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_vars_shows_on_params_diff(tmp_dir, scm, dvc):\n    params_file = tmp_dir / \"test_params.yaml\"\n    param_data = {\"vars\": {\"model1\": {\"epoch\": 15}, \"model2\": {\"epoch\": 35}}}\n    dump_yaml(params_file, param_data)\n    d = {\n        \"vars\": [\"test_params.yaml\"],\n        \"stages\": {\n            \"build\": {\n                \"foreach\": \"${vars}\",\n                \"do\": {\"cmd\": \"script --epoch ${item.epoch}\"},\n            }\n        },\n    }\n    dump_yaml(\"dvc.yaml\", d)\n    assert dvc.params.diff() == {\n        \"test_params.yaml\": {\n            \"vars.model1.epoch\": {\"new\": 15, \"old\": None},\n            \"vars.model2.epoch\": {\"new\": 35, \"old\": None},\n        }\n    }\n    scm.add([\"dvc.yaml\", \"test_params.yaml\"])\n    scm.commit(\"added stages\")\n\n    param_data[\"vars\"][\"model1\"][\"epoch\"] = 20\n    dump_yaml(params_file, param_data)\n    assert dvc.params.diff() == {\n        \"test_params.yaml\": {\n            \"vars.model1.epoch\": {\"new\": 20, \"old\": 15, \"diff\": 5},\n        }\n    }\n\n    data_dir = tmp_dir / \"data\"\n    data_dir.mkdir()\n    with data_dir.chdir():\n        assert dvc.params.diff() == {\n            relpath(params_file): {\n                \"vars.model1.epoch\": {\"new\": 20, \"old\": 15, \"diff\": 5},\n            }\n        }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_targeted_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/params/test_diff.py_test_diff_targeted_", "embedding": null, "metadata": {"file_path": "tests/func/params/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 194, "end_line": 235, "span_ids": ["test_diff_targeted"], "tokens": 344}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_targeted(tmp_dir, scm, dvc, run_copy):\n    from dvc.dvcfile import PIPELINE_FILE\n\n    tmp_dir.gen(\n        {\n            \"foo\": \"foo\",\n            \"params.yaml\": \"foo: bar\",\n            \"other_params.yaml\": \"xyz: val\",\n        }\n    )\n    run_copy(\n        \"foo\",\n        \"bar\",\n        name=\"copy-foo-bar\",\n        params=[\"foo\", \"other_params.yaml:xyz\"],\n    )\n\n    scm.add([\"params.yaml\", \"other_params.yaml\", PIPELINE_FILE])\n    scm.commit(\"add stage\")\n\n    tmp_dir.scm_gen(\n        {\"params.yaml\": \"foo: baz\", \"other_params.yaml\": \"xyz: val2\"},\n        commit=\"baz\",\n    )\n    tmp_dir.scm_gen(\n        {\"params.yaml\": \"foo: qux\", \"other_params.yaml\": \"xyz: val3\"},\n        commit=\"qux\",\n    )\n\n    assert dvc.params.diff(a_rev=\"HEAD~2\") == {\n        \"params.yaml\": {\"foo\": {\"old\": \"bar\", \"new\": \"qux\"}},\n        \"other_params.yaml\": {\"xyz\": {\"old\": \"val\", \"new\": \"val3\"}},\n    }\n\n    assert dvc.params.diff(a_rev=\"HEAD~2\", targets=[\"params.yaml\"]) == {\n        \"params.yaml\": {\"foo\": {\"old\": \"bar\", \"new\": \"qux\"}}\n    }\n\n    assert dvc.params.diff(a_rev=\"HEAD~2\", targets=[\"other_params.yaml\"]) == {\n        \"other_params.yaml\": {\"xyz\": {\"old\": \"val\", \"new\": \"val3\"}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/__init__.py_from_dvc_parsing_import_D_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/__init__.py_from_dvc_parsing_import_D_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 55, "span_ids": ["imports", "make_foreach_def", "make_entry_definition"], "tokens": 394}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.parsing import DataResolver, EntryDefinition, ForeachDefinition\nfrom dvc.parsing.context import Context\n\nTEMPLATED_DVC_YAML_DATA = {\n    \"stages\": {\n        \"stage1\": {\n            \"cmd\": \"python script.py ${dict.foo} --out ${dict.bar}\",\n            \"outs\": [\"${dict.bar}\"],\n            \"deps\": [\"${dict.foo}\"],\n            \"frozen\": \"${freeze}\",\n        },\n        \"stage2\": {\"cmd\": \"echo ${dict.foo} ${dict.bar}\"},\n    }\n}\n\nCONTEXT_DATA = {\n    \"dict\": {\"foo\": \"foo\", \"bar\": \"bar\"},\n    \"list\": [\"param1\", \"param2\"],\n    \"freeze\": True,\n}\n\nRESOLVED_DVC_YAML_DATA = {\n    \"stages\": {\n        \"stage1\": {\n            \"cmd\": \"python script.py foo --out bar\",\n            \"outs\": [\"bar\"],\n            \"deps\": [\"foo\"],\n            \"frozen\": True,\n        },\n        \"stage2\": {\"cmd\": \"echo foo bar\"},\n    }\n}\n\nUSED_VARS = {\n    \"stage1\": {\"dict.foo\": \"foo\", \"dict.bar\": \"bar\", \"freeze\": True},\n    \"stage2\": {\"dict.foo\": \"foo\", \"dict.bar\": \"bar\"},\n}\n\n\ndef make_entry_definition(wdir, name, data, context=None) -> EntryDefinition:\n    return EntryDefinition(\n        DataResolver(wdir.dvc, wdir, {}), context or Context(), name, data\n    )\n\n\ndef make_foreach_def(\n    wdir, name, foreach_data, do_data=None, context=None\n) -> ForeachDefinition:\n    return ForeachDefinition(\n        DataResolver(wdir.dvc, wdir, {}),\n        context or Context(),\n        name,\n        {\"foreach\": foreach_data, \"do\": do_data or {}},\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py__Negative_tests_for_the_escape_ansi.return.ansi_escape_sub_line_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py__Negative_tests_for_the_escape_ansi.return.ansi_escape_sub_line_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 20, "span_ids": ["escape_ansi", "docstring"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Negative tests for the parametrization.\"\"\"\n\n\nimport logging\nimport re\n\nimport pytest\n\nfrom dvc.parsing import ResolveError\nfrom dvc.parsing.context import Context\nfrom dvc.parsing.interpolate import embrace\nfrom dvc.utils.humanize import join\nfrom dvc.utils.serialize import dump_yaml\n\nfrom . import make_entry_definition, make_foreach_def\n\n\ndef escape_ansi(line):\n    ansi_escape = re.compile(r\"(\\x9B|\\x1B\\[)[0-?]*[ -\\/]*[@-~]\")\n    return ansi_escape.sub(\"\", line)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py__Tests_for_the_interpola_test_vars_interpolation_errors.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py__Tests_for_the_interpola_test_vars_interpolation_errors.assert_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 23, "end_line": 36, "span_ids": ["escape_ansi", "test_vars_interpolation_errors"], "tokens": 117}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# Tests for the interpolated entries\n\n\n@pytest.mark.parametrize(\"vars_\", [\"${file}_params.yaml\", {\"foo\": \"${foo}\"}])\ndef test_vars_interpolation_errors(tmp_dir, dvc, vars_):\n    definition = make_entry_definition(tmp_dir, \"build\", {\"vars\": [vars_]})\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert (\n        str(exc_info.value)\n        == \"failed to parse 'stages.build.vars' in 'dvc.yaml': \"\n        \"interpolating is not allowed\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_failed_to_interpolate_test_failed_to_interpolate.assert_definition_context": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_failed_to_interpolate_test_failed_to_interpolate.assert_definition_context", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 39, "end_line": 55, "span_ids": ["test_failed_to_interpolate"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_failed_to_interpolate(tmp_dir, dvc):\n    context = Context(models={\"foo\": \"bar\"})\n    definition = make_entry_definition(\n        tmp_dir, \"build\", {\"cmd\": \"echo ${models.foo.}\"}, context\n    )\n\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert escape_ansi(str(exc_info.value)) == (\n        \"failed to parse 'stages.build.cmd' in 'dvc.yaml':\\n\"\n        \"${models.foo.}\\n\"\n        \"            ^\\n\"\n        \"ParseException: Expected end of text, found '.'\"\n        \"  (at char 12), (line:1, col:13)\"\n    )\n    assert definition.context == {\"models\": {\"foo\": \"bar\"}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_local_vars_params_file_not_exist_test_local_vars_params_file_not_exist.assert_not_definition_con": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_local_vars_params_file_not_exist_test_local_vars_params_file_not_exist.assert_not_definition_con", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 58, "end_line": 72, "span_ids": ["test_local_vars_params_file_not_exist"], "tokens": 110}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_local_vars_params_file_not_exist(tmp_dir, dvc):\n    definition = make_entry_definition(\n        tmp_dir,\n        \"build\",\n        {\"vars\": [\"not_existing_params.yaml\"], \"cmd\": \"echo ${models.foo}\"},\n    )\n\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert str(exc_info.value) == (\n        \"failed to parse stage 'build' in 'dvc.yaml': \"\n        \"'not_existing_params.yaml' does not exist\"\n    )\n    assert not definition.context", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_specified_key_does_not_exist_test_specified_key_does_not_exist.assert_definition_context": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_specified_key_does_not_exist_test_specified_key_does_not_exist.assert_definition_context", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 75, "end_line": 89, "span_ids": ["test_specified_key_does_not_exist"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_specified_key_does_not_exist(tmp_dir, dvc):\n    definition = make_entry_definition(\n        tmp_dir,\n        \"build\",\n        {\"cmd\": \"echo ${models.foobar}\"},\n        Context(models={\"foo\": \"foo\"}),\n    )\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert str(exc_info.value) == (\n        \"failed to parse 'stages.build.cmd' in 'dvc.yaml': \"\n        \"Could not find 'models.foobar'\"\n    )\n    assert definition.context == {\"models\": {\"foo\": \"foo\"}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_wdir_failed_to_interpolate_test_wdir_failed_to_interpolate.assert_definition_context": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_wdir_failed_to_interpolate_test_wdir_failed_to_interpolate.assert_definition_context", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 92, "end_line": 118, "span_ids": ["test_wdir_failed_to_interpolate"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"wdir, expected_msg\",\n    [\n        (\"${models[foobar]}\", \" Could not find 'models.foobar'\"),\n        (\n            \"${models.foo]}\",\n            \"\\n${models.foo]}\\n\"\n            \"            ^\\n\"\n            \"ParseException: Expected end of text, found ']'\"\n            \"  (at char 12), (line:1, col:13)\",\n        ),\n    ],\n)\ndef test_wdir_failed_to_interpolate(tmp_dir, dvc, wdir, expected_msg):\n    definition = make_entry_definition(\n        tmp_dir,\n        \"build\",\n        {\"wdir\": wdir, \"cmd\": \"echo ${models.bar}\"},\n        Context(models={\"bar\": \"bar\"}),\n    )\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert escape_ansi(str(exc_info.value)) == (\n        \"failed to parse 'stages.build.wdir' in 'dvc.yaml':\" + expected_msg\n    )\n    assert definition.context == {\"models\": {\"bar\": \"bar\"}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_interpolate_non_string_test_interpolate_non_string.assert_definition_context": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_interpolate_non_string_test_interpolate_non_string.assert_definition_context", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 121, "end_line": 132, "span_ids": ["test_interpolate_non_string"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_interpolate_non_string(tmp_dir, dvc):\n    definition = make_entry_definition(\n        tmp_dir, \"build\", {\"cmd\": \"echo ${models}\"}, Context(models={})\n    )\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert str(exc_info.value) == (\n        \"failed to parse 'stages.build.cmd' in 'dvc.yaml':\\n\"\n        \"Cannot interpolate data of type 'dict'\"\n    )\n    assert definition.context == {\"models\": {}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_partial_vars_doesnot_exist_test_partial_vars_doesnot_exist.assert_not_definition_con": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_partial_vars_doesnot_exist_test_partial_vars_doesnot_exist.assert_not_definition_con", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 135, "end_line": 151, "span_ids": ["test_partial_vars_doesnot_exist"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_partial_vars_doesnot_exist(tmp_dir, dvc):\n    dump_yaml(\"test_params.yaml\", {\"sub1\": \"sub1\", \"sub2\": \"sub2\"})\n\n    definition = make_entry_definition(\n        tmp_dir,\n        \"build\",\n        {\"vars\": [\"test_params.yaml:sub3\"], \"cmd\": \"echo ${sub1} ${sub2}\"},\n    )\n\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve()\n\n    assert str(exc_info.value) == (\n        \"failed to parse stage 'build' in 'dvc.yaml': \"\n        \"could not find 'sub3' in 'test_params.yaml'\"\n    )\n    assert not definition.context", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py__Tests_foreach_generated_test_foreach_data_syntax_error.assert_escape_ansi_str_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py__Tests_foreach_generated_test_foreach_data_syntax_error.assert_escape_ansi_str_ex", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 154, "end_line": 168, "span_ids": ["test_partial_vars_doesnot_exist", "test_foreach_data_syntax_error"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "# Tests foreach generated stages and their error messages\n\n\ndef test_foreach_data_syntax_error(tmp_dir, dvc):\n    definition = make_foreach_def(tmp_dir, \"build\", \"${syntax.[error}\", {})\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n\n    assert escape_ansi(str(exc_info.value)) == (\n        \"failed to parse 'stages.build.foreach' in 'dvc.yaml':\\n\"\n        \"${syntax.[error}\\n\"\n        \"        ^\\n\"\n        \"ParseException: Expected end of text, found '.'\"\n        \"  (at char 8), (line:1, col:9)\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_data_key_does_not_exists_test_foreach_data_key_does_not_exists.assert_str_exc_info_value": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_data_key_does_not_exists_test_foreach_data_key_does_not_exists.assert_str_exc_info_value", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 171, "end_line": 179, "span_ids": ["test_foreach_data_key_does_not_exists"], "tokens": 106}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"key\", [\"modelss\", \"modelss.123\"])\ndef test_foreach_data_key_does_not_exists(tmp_dir, dvc, key):\n    definition = make_foreach_def(tmp_dir, \"build\", embrace(key), {})\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n    assert str(exc_info.value) == (\n        \"failed to parse 'stages.build.foreach' in 'dvc.yaml': \"\n        f\"Could not find '{key}'\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_data_expects_list_or_dict_test_foreach_data_expects_list_or_dict.assert_str_exc_info_value": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_data_expects_list_or_dict_test_foreach_data_expects_list_or_dict.assert_str_exc_info_value", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 182, "end_line": 195, "span_ids": ["test_foreach_data_expects_list_or_dict"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"foreach_data\", [\"${foo}\", \"${dct.model1}\", \"${lst.0}\", \"foobar\"],\n)\ndef test_foreach_data_expects_list_or_dict(tmp_dir, dvc, foreach_data):\n    context = Context(\n        {\"foo\": \"bar\", \"dct\": {\"model1\": \"a-out\"}, \"lst\": [\"foo\", \"bar\"]}\n    )\n    definition = make_foreach_def(tmp_dir, \"build\", foreach_data, {}, context)\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n    assert str(exc_info.value) == (\n        \"failed to resolve 'stages.build.foreach' in 'dvc.yaml': \"\n        \"expected list/dictionary, got str\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_overwriting_item_in_list_test_foreach_overwriting_item_in_list.assert_caplog_messages_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_overwriting_item_in_list_test_foreach_overwriting_item_in_list.assert_caplog_messages_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 198, "end_line": 219, "span_ids": ["test_foreach_overwriting_item_in_list"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"global_data, where\",\n    [\n        ({\"item\": 10, \"key\": 10}, \"item and key are\"),\n        ({\"item\": 10}, \"item is\"),\n        ({\"key\": 5}, \"key is\"),\n    ],\n)\ndef test_foreach_overwriting_item_in_list(\n    tmp_dir, dvc, caplog, global_data, where\n):\n    context = Context(global_data)\n    definition = make_foreach_def(\n        tmp_dir, \"build\", {\"model1\": 10, \"model2\": 5}, {}, context,\n    )\n    with caplog.at_level(logging.WARNING, logger=\"dvc.parsing\"):\n        definition.resolve_all()\n\n    assert caplog.messages == [\n        f\"{where} already specified, \"\n        \"will be overwritten for stages generated from 'build'\"\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_do_syntax_errors_test_foreach_do_syntax_errors.assert_escape_ansi_str_ex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_do_syntax_errors_test_foreach_do_syntax_errors.assert_escape_ansi_str_ex", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 222, "end_line": 236, "span_ids": ["test_foreach_do_syntax_errors"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_do_syntax_errors(tmp_dir, dvc):\n    definition = make_foreach_def(\n        tmp_dir, \"build\", [\"foo\", \"bar\"], {\"cmd\": \"echo ${syntax.[error}\"},\n    )\n\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n\n    assert escape_ansi(str(exc_info.value)) == (\n        \"failed to parse 'stages.build.cmd' in 'dvc.yaml':\\n\"\n        \"${syntax.[error}\\n\"\n        \"        ^\\n\"\n        \"ParseException: Expected end of text, found '.'\"\n        \"  (at char 8), (line:1, col:9)\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_do_definition_item_does_not_exist_test_foreach_do_definition_item_does_not_exist.assert_context_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_do_definition_item_does_not_exist_test_foreach_do_definition_item_does_not_exist.assert_context_foo_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 239, "end_line": 267, "span_ids": ["test_foreach_do_definition_item_does_not_exist"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"key, loc\",\n    [\n        (\n            \"item.thresh\",  # the `thresh` in not available on model2`\n            \"stages.build@1.cmd\",\n        ),\n        (\"foo.bar\", \"stages.build@0.cmd\"),  # not available on any stages\n    ],\n)\ndef test_foreach_do_definition_item_does_not_exist(tmp_dir, dvc, key, loc):\n    context = Context(foo=\"bar\")\n    definition = make_foreach_def(\n        tmp_dir,\n        \"build\",\n        [{\"thresh\": \"10\"}, {}],\n        {\"cmd\": embrace(key)},\n        context,\n    )\n\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n\n    assert str(exc_info.value) == (\n        f\"failed to parse '{loc}' in 'dvc.yaml': Could not find '{key}'\"\n    )\n\n    # should have no `item` and `key` even though it failed to resolve.\n    assert context == {\"foo\": \"bar\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_item_key_in_generated_stage_vars_test_item_key_in_generated_stage_vars.assert_context_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_item_key_in_generated_stage_vars_test_item_key_in_generated_stage_vars.assert_context_foo_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 270, "end_line": 308, "span_ids": ["test_item_key_in_generated_stage_vars"], "tokens": 301}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"redefine\",\n    [\n        {\"item\": 5},\n        {\"key\": 5},\n        {\"item\": 5, \"key\": 10},\n        {\"item\": {\"epochs\": 10}},\n    ],\n)\n@pytest.mark.parametrize(\"from_file\", [True, False])\ndef test_item_key_in_generated_stage_vars(tmp_dir, dvc, redefine, from_file):\n    context = Context(foo=\"bar\")\n    vars_ = [redefine]\n    if from_file:\n        dump_yaml(\"test_params.yaml\", redefine)\n        vars_ = [\"test_params.yaml\"]\n\n    definition = make_foreach_def(\n        tmp_dir,\n        \"build\",\n        {\"model1\": {\"thresh\": \"10\"}, \"model2\": {\"thresh\": 5}},\n        {\"vars\": vars_, \"cmd\": \"${item}\"},\n        context,\n    )\n\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n\n    message = str(exc_info.value)\n    assert (\n        \"failed to parse stage 'build@model1' in 'dvc.yaml': \"\n        \"attempted to modify reserved\"\n    ) in message\n\n    key_or_keys = \"keys\" if len(redefine) > 1 else \"key\"\n    assert f\"{key_or_keys} {join(redefine)}\" in message\n    if from_file:\n        assert \"in 'test_params.yaml'\" in message\n    assert context == {\"foo\": \"bar\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_wdir_key_does_not_exist_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_errors.py_test_foreach_wdir_key_does_not_exist_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_errors.py", "file_name": "test_errors.py", "file_type": "text/x-python", "category": "test", "start_line": 311, "end_line": 327, "span_ids": ["test_foreach_wdir_key_does_not_exist"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_wdir_key_does_not_exist(tmp_dir, dvc):\n    definition = make_foreach_def(\n        tmp_dir,\n        \"build\",\n        \"${models}\",\n        {\"wdir\": \"${ite}\", \"cmd\": \"echo ${item}\"},\n        Context(models=[\"foo\", \"bar\"]),\n    )\n    with pytest.raises(ResolveError) as exc_info:\n        definition.resolve_all()\n    assert (\n        str(exc_info.value)\n        == \"failed to parse 'stages.build@foo.wdir' in 'dvc.yaml': \"\n        \"Could not find 'ite'\"\n    )\n    assert definition.context == {\"models\": [\"foo\", \"bar\"]}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py__Testing_happy_paths_fo_test_with_simple_list_data.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py__Testing_happy_paths_fo_test_with_simple_list_data.None_4", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 24, "span_ids": ["test_with_simple_list_data", "docstring"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "\"\"\"Testing happy paths for the foreach.\"\"\"\nimport os\n\nimport pytest\n\nfrom dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver, ForeachDefinition\nfrom dvc.parsing.context import Context\nfrom dvc.utils.serialize import dump_yaml\n\n\ndef test_with_simple_list_data(tmp_dir, dvc):\n    \"\"\"Testing a simple non-nested list as a foreach data\"\"\"\n    resolver = DataResolver(dvc, tmp_dir, {})\n\n    context = Context()\n    data = {\"foreach\": [\"foo\", \"bar\", \"baz\"], \"do\": {\"cmd\": \"echo ${item}\"}}\n    definition = ForeachDefinition(resolver, context, \"build\", data)\n\n    assert definition.resolve_one(\"foo\") == {\"build@foo\": {\"cmd\": \"echo foo\"}}\n    assert definition.resolve_one(\"bar\") == {\"build@bar\": {\"cmd\": \"echo bar\"}}\n    # check that `foreach` item-key replacement didnot leave any leftovers.\n    assert not context\n    assert not resolver.tracked_vars[\"build@foo\"]\n    assert not resolver.tracked_vars[\"build@bar\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_with_dict_data_test_with_dict_data.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_with_dict_data_test_with_dict_data.None_4", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 27, "end_line": 45, "span_ids": ["test_with_dict_data"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_with_dict_data(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir, {})\n    context = Context()\n\n    foreach_data = {\"model1\": \"foo\", \"model2\": \"bar\"}\n    data = {\"foreach\": foreach_data, \"do\": {\"cmd\": \"echo ${key} ${item}\"}}\n    definition = ForeachDefinition(resolver, context, \"build\", data)\n\n    assert definition.resolve_one(\"model1\") == {\n        \"build@model1\": {\"cmd\": \"echo model1 foo\"}\n    }\n    assert definition.resolve_one(\"model2\") == {\n        \"build@model2\": {\"cmd\": \"echo model2 bar\"}\n    }\n\n    # check that `foreach` item-key replacement didnot leave any leftovers.\n    assert not context\n    assert not resolver.tracked_vars[\"build@model1\"]\n    assert not resolver.tracked_vars[\"build@model2\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_with_composite_list_test_with_composite_list.assert_not_resolver_track": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_with_composite_list_test_with_composite_list.assert_not_resolver_track", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 62, "span_ids": ["test_with_composite_list"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_with_composite_list(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir, {})\n\n    context = Context()\n    foreach_data = [{\"thresh\": \"foo\"}, {\"thresh\": \"bar\"}]\n    data = {\"foreach\": foreach_data, \"do\": {\"cmd\": \"echo ${item.thresh}\"}}\n    definition = ForeachDefinition(resolver, context, \"build\", data)\n\n    assert definition.resolve_one(\"0\") == {\"build@0\": {\"cmd\": \"echo foo\"}}\n    # check that `foreach` item-key replacement didnot leave any leftovers.\n    assert not context\n\n    assert definition.resolve_one(\"1\") == {\"build@1\": {\"cmd\": \"echo bar\"}}\n    assert not context\n    assert not resolver.tracked_vars[\"build@0\"]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_interpolated_simple_list_test_foreach_interpolated_simple_list.assert_not_any_item_for_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_interpolated_simple_list_test_foreach_interpolated_simple_list.assert_not_any_item_for_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 65, "end_line": 78, "span_ids": ["test_foreach_interpolated_simple_list"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_interpolated_simple_list(tmp_dir, dvc):\n    foreach_data = [\"foo\", \"bar\", \"baz\"]\n    vars_ = {\"models\": foreach_data}\n    resolver = DataResolver(dvc, tmp_dir, {\"vars\": [vars_]})\n    data = {\"foreach\": \"${models}\", \"do\": {\"cmd\": \"echo ${item}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@foo\": {\"cmd\": \"echo foo\"},\n        \"build@bar\": {\"cmd\": \"echo bar\"},\n        \"build@baz\": {\"cmd\": \"echo baz\"},\n    }\n    assert resolver.context == {\"models\": foreach_data}\n    assert not any(item for item in resolver.tracked_vars.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_interpolate_with_composite_data_test_foreach_interpolate_with_composite_data.assert_not_any_item_for_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_interpolate_with_composite_data_test_foreach_interpolate_with_composite_data.assert_not_any_item_for_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 81, "end_line": 108, "span_ids": ["test_foreach_interpolate_with_composite_data"], "tokens": 263}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"foreach_def\", [\"${item.thresh}\", \"${item[thresh]}\"])\n@pytest.mark.parametrize(\n    \"foreach_data, result\",\n    [\n        (\n            {\"model1\": {\"thresh\": \"foo\"}, \"model2\": {\"thresh\": \"bar\"}},\n            {\n                \"build@model1\": {\"cmd\": \"echo foo\"},\n                \"build@model2\": {\"cmd\": \"echo bar\"},\n            },\n        ),\n        (\n            [{\"thresh\": \"foo\"}, {\"thresh\": \"bar\"}],\n            {\"build@0\": {\"cmd\": \"echo foo\"}, \"build@1\": {\"cmd\": \"echo bar\"}},\n        ),\n    ],\n)\ndef test_foreach_interpolate_with_composite_data(\n    tmp_dir, dvc, foreach_def, foreach_data, result\n):\n    vars_ = [{\"models\": foreach_data}]\n    resolver = DataResolver(dvc, tmp_dir, {\"vars\": vars_})\n    data = {\"foreach\": \"${models}\", \"do\": {\"cmd\": f\"echo {foreach_def}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == result\n    assert resolver.context == {\"models\": foreach_data}\n    assert not any(item for item in resolver.tracked_vars.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_params_file_with_dict_tracked_test_params_file_with_dict_tracked.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_params_file_with_dict_tracked_test_params_file_with_dict_tracked.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 111, "end_line": 129, "span_ids": ["test_params_file_with_dict_tracked"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_file_with_dict_tracked(tmp_dir, dvc):\n    foreach_data = {\"model1\": {\"thresh\": \"foo\"}, \"model2\": {\"thresh\": \"bar\"}}\n    params = {\"models\": foreach_data}\n    dump_yaml(\"params.yaml\", params)\n\n    resolver = DataResolver(dvc, tmp_dir, {})\n    data = {\"foreach\": \"${models}\", \"do\": {\"cmd\": \"echo ${item.thresh}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@model1\": {\"cmd\": \"echo foo\"},\n        \"build@model2\": {\"cmd\": \"echo bar\"},\n    }\n    # check that `foreach` item-key replacement didnot leave any leftovers.\n    assert resolver.context == {\"models\": foreach_data}\n    assert resolver.tracked_vars == {\n        \"build@model1\": {\"params.yaml\": {\"models.model1.thresh\": \"foo\"}},\n        \"build@model2\": {\"params.yaml\": {\"models.model2.thresh\": \"bar\"}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_params_file_tracked_for_composite_list_test_params_file_tracked_for_composite_list.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_params_file_tracked_for_composite_list_test_params_file_tracked_for_composite_list.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 132, "end_line": 152, "span_ids": ["test_params_file_tracked_for_composite_list"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_params_file_tracked_for_composite_list(tmp_dir, dvc):\n    foreach_data = [\n        {\"thresh\": \"foo\"},\n        {\"thresh\": \"bar\"},\n    ]\n    params = {\"models\": foreach_data}\n    dump_yaml(\"params.yaml\", params)\n\n    resolver = DataResolver(dvc, tmp_dir, {})\n    data = {\"foreach\": \"${models}\", \"do\": {\"cmd\": \"echo ${item.thresh}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@0\": {\"cmd\": \"echo foo\"},\n        \"build@1\": {\"cmd\": \"echo bar\"},\n    }\n    assert resolver.context == {\"models\": foreach_data}\n    assert resolver.tracked_vars == {\n        \"build@0\": {\"params.yaml\": {\"models.0.thresh\": \"foo\"}},\n        \"build@1\": {\"params.yaml\": {\"models.1.thresh\": \"bar\"}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_data_from_nested_vars_test_foreach_data_from_nested_vars.assert_not_any_item_for_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_data_from_nested_vars_test_foreach_data_from_nested_vars.assert_not_any_item_for_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 155, "end_line": 166, "span_ids": ["test_foreach_data_from_nested_vars"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_data_from_nested_vars(tmp_dir, dvc):\n    vars_ = {\"models\": {\"lst\": [{\"thresh\": 10}, {\"thresh\": 15}]}}\n    resolver = DataResolver(dvc, tmp_dir, {\"vars\": [vars_]})\n    data = {\"foreach\": \"${models.lst}\", \"do\": {\"cmd\": \"echo ${item.thresh}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@0\": {\"cmd\": \"echo 10\"},\n        \"build@1\": {\"cmd\": \"echo 15\"},\n    }\n    assert resolver.context == vars_\n    assert not any(item for item in resolver.tracked_vars.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_partial_interpolations_test_foreach_partial_interpolations.assert_not_any_item_for_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_partial_interpolations_test_foreach_partial_interpolations.assert_not_any_item_for_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 169, "end_line": 180, "span_ids": ["test_foreach_partial_interpolations"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_partial_interpolations(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir, {\"vars\": [{\"bar\": \"bar\"}]})\n    foreach_data = {\"model1\": \"foo\", \"model2\": \"${bar}\"}\n    data = {\"foreach\": foreach_data, \"do\": {\"cmd\": \"echo ${item}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@model1\": {\"cmd\": \"echo foo\"},\n        \"build@model2\": {\"cmd\": \"echo bar\"},\n    }\n    assert resolver.context == {\"bar\": \"bar\"}\n    assert not any(item for item in resolver.tracked_vars.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_mixed_vars_for_foreach_data_test_mixed_vars_for_foreach_data.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_mixed_vars_for_foreach_data_test_mixed_vars_for_foreach_data.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 183, "end_line": 199, "span_ids": ["test_mixed_vars_for_foreach_data"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_mixed_vars_for_foreach_data(tmp_dir, dvc):\n    dump_yaml(\"params.yaml\", {\"models\": {\"model1\": \"foo\"}})\n    dump_yaml(\"test_params.yaml\", {\"models\": {\"model2\": \"bar\"}})\n\n    resolver = DataResolver(dvc, tmp_dir, {\"vars\": [\"test_params.yaml\"]})\n    data = {\"foreach\": \"${models}\", \"do\": {\"cmd\": \"echo ${item}\"}}\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@model1\": {\"cmd\": \"echo foo\"},\n        \"build@model2\": {\"cmd\": \"echo bar\"},\n    }\n    assert resolver.context == {\"models\": {\"model1\": \"foo\", \"model2\": \"bar\"}}\n    assert resolver.tracked_vars == {\n        \"build@model1\": {\"params.yaml\": {\"models.model1\": \"foo\"}},\n        \"build@model2\": {\"test_params.yaml\": {\"models.model2\": \"bar\"}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_mixed_vars_for_foreach_data_2_test_mixed_vars_for_foreach_data_2.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_mixed_vars_for_foreach_data_2_test_mixed_vars_for_foreach_data_2.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 202, "end_line": 238, "span_ids": ["test_mixed_vars_for_foreach_data_2"], "tokens": 343}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_mixed_vars_for_foreach_data_2(tmp_dir, dvc):\n    dump_yaml(\n        \"params.yaml\",\n        {\"models\": {\"model1\": {\"thresh\": 10}, \"model2\": {\"thresh\": 15}}},\n    )\n    dump_yaml(\n        \"test_params.yaml\",\n        {\"models\": {\"model1\": {\"epochs\": 5}, \"model2\": {\"epochs\": 10}}},\n    )\n\n    resolver = DataResolver(dvc, tmp_dir, {\"vars\": [\"test_params.yaml\"]})\n    data = {\n        \"foreach\": \"${models}\",\n        \"do\": {\"cmd\": \"echo ${item.thresh} ${item.epochs}\"},\n    }\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        \"build@model1\": {\"cmd\": \"echo 10 5\"},\n        \"build@model2\": {\"cmd\": \"echo 15 10\"},\n    }\n    assert resolver.context == {\n        \"models\": {\n            \"model1\": {\"thresh\": 10, \"epochs\": 5},\n            \"model2\": {\"thresh\": 15, \"epochs\": 10},\n        }\n    }\n    assert resolver.tracked_vars == {\n        \"build@model1\": {\n            \"params.yaml\": {\"models.model1.thresh\": 10},\n            \"test_params.yaml\": {\"models.model1.epochs\": 5},\n        },\n        \"build@model2\": {\n            \"params.yaml\": {\"models.model2.thresh\": 15},\n            \"test_params.yaml\": {\"models.model2.epochs\": 10},\n        },\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_interpolated_wdir_test_foreach_with_interpolated_wdir.assert_not_any_item_for_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_interpolated_wdir_test_foreach_with_interpolated_wdir.assert_not_any_item_for_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 241, "end_line": 259, "span_ids": ["test_foreach_with_interpolated_wdir"], "tokens": 213}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_with_interpolated_wdir(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir / \"data\", {})\n    foreach_data = [\"foo\", \"bar\"]\n    data = {\n        \"foreach\": foreach_data,\n        \"do\": {\"wdir\": \"${item}\", \"cmd\": \"echo hello\"},\n    }\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        # note that the resolver generates `wdir` relative to file's wdir\n        # so, this is just `foo`, not `data/foo`.\n        # figuring out `wdir` is the responsibility of the `load_stage`/`Stage`\n        \"build@foo\": {\"wdir\": \"foo\", \"cmd\": \"echo hello\"},\n        \"build@bar\": {\"wdir\": \"bar\", \"cmd\": \"echo hello\"},\n    }\n\n    assert not resolver.context\n    assert not any(item for item in resolver.tracked_vars.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_local_vars_test_foreach_with_local_vars.assert_not_any_item_for_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_local_vars_test_foreach_with_local_vars.assert_not_any_item_for_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 262, "end_line": 282, "span_ids": ["test_foreach_with_local_vars"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_with_local_vars(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir / \"data\", {})\n    foreach_data = [\"foo\", \"bar\"]\n    data = {\n        \"foreach\": foreach_data,\n        \"do\": {\n            \"vars\": [{\"foobar\": \"foobar\"}],\n            \"cmd\": \"echo ${item} ${foobar}\",\n        },\n    }\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        # note that the resolver generates `wdir` relative to file's wdir\n        # so, this is just `foo`, not `data/foo`.\n        # figuring out `wdir` is the responsibility of the `load_stage`/`Stage`\n        \"build@foo\": {\"cmd\": \"echo foo foobar\"},\n        \"build@bar\": {\"cmd\": \"echo bar foobar\"},\n    }\n    assert not resolver.context\n    assert not any(item for item in resolver.tracked_vars.values())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_imported_vars_test_foreach_with_imported_vars.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_imported_vars_test_foreach_with_imported_vars.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 285, "end_line": 318, "span_ids": ["test_foreach_with_imported_vars"], "tokens": 344}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"local_import\",\n    [\n        \"test_params.yaml\",\n        \"test_params.yaml:train\",\n        \"test_params.yaml:train,prepare\",\n    ],\n)\ndef test_foreach_with_imported_vars(tmp_dir, dvc, local_import):\n    dump_yaml(\"params.yaml\", {\"models\": {\"model1\": {\"thresh\": \"foo\"}}})\n    dump_yaml(\n        \"test_params.yaml\", {\"train\": {\"epochs\": 10}, \"prepare\": {\"nums\": 25}}\n    )\n    resolver = DataResolver(dvc, tmp_dir, {})\n    foreach_data = [\"foo\", \"bar\"]\n    data = {\n        \"foreach\": foreach_data,\n        \"do\": {\"vars\": [local_import], \"cmd\": \"echo ${item} ${train.epochs}\"},\n    }\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        # note that the resolver generates `wdir` relative to file's wdir\n        # so, this is just `foo`, not `data/foo`.\n        # figuring out `wdir` is the responsibility of the `load_stage`/`Stage`\n        \"build@foo\": {\"cmd\": \"echo foo 10\"},\n        \"build@bar\": {\"cmd\": \"echo bar 10\"},\n    }\n\n    assert resolver.context == {\"models\": {\"model1\": {\"thresh\": \"foo\"}}}\n    assert resolver.tracked_vars == {\n        \"build@foo\": {\"test_params.yaml\": {\"train.epochs\": 10}},\n        \"build@bar\": {\"test_params.yaml\": {\"train.epochs\": 10}},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_interpolated_wdir_and_local_vars_test_foreach_with_interpolated_wdir_and_local_vars.assert_resolver_context_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_with_interpolated_wdir_and_local_vars_test_foreach_with_interpolated_wdir_and_local_vars.assert_resolver_context_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 321, "end_line": 394, "span_ids": ["test_foreach_with_interpolated_wdir_and_local_vars"], "tokens": 694}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"local_import\", [\"params.yaml\", \"params.yaml:train,prepare\"]\n)\ndef test_foreach_with_interpolated_wdir_and_local_vars(\n    tmp_dir, dvc, local_import\n):\n    dump_yaml(\"params.yaml\", {\"models\": {\"model1\": {\"thresh\": \"foo\"}}})\n\n    for i in range(5):\n        build_dir = tmp_dir / (\"model-\" + str(i))\n        build_dir.mkdir()\n        dump_yaml(\n            build_dir / \"params.yaml\",\n            {\"train\": {\"epochs\": 1 + i}, \"prepare\": {\"nums\": 10 * i}},\n        )\n\n    resolver = DataResolver(dvc, tmp_dir, {})\n    data = {\n        \"foreach\": [0, 1, 2, 3, 4],\n        \"do\": {\n            \"wdir\": \"model-${item}\",\n            \"vars\": [local_import],\n            \"cmd\": \"echo ${item} ${train.epochs} ${prepare.nums}\",\n        },\n    }\n    definition = ForeachDefinition(resolver, resolver.context, \"build\", data)\n\n    assert definition.resolve_all() == {\n        # note that the resolver generates `wdir` relative to file's wdir\n        # so, this is just `foo`, not `data/foo`.\n        # figuring out `wdir` is the responsibility of the `load_stage`/`Stage`\n        \"build@0\": {\"wdir\": \"model-0\", \"cmd\": \"echo 0 1 0\"},\n        \"build@1\": {\"wdir\": \"model-1\", \"cmd\": \"echo 1 2 10\"},\n        \"build@2\": {\"wdir\": \"model-2\", \"cmd\": \"echo 2 3 20\"},\n        \"build@3\": {\"wdir\": \"model-3\", \"cmd\": \"echo 3 4 30\"},\n        \"build@4\": {\"wdir\": \"model-4\", \"cmd\": \"echo 4 5 40\"},\n    }\n\n    assert resolver.context == {\"models\": {\"model1\": {\"thresh\": \"foo\"}}}\n    assert resolver.tracked_vars == {\n        \"build@0\": {\n            os.path.join(\"model-0\", \"params.yaml\"): {\n                \"train.epochs\": 1,\n                \"prepare.nums\": 0,\n            }\n        },\n        \"build@1\": {\n            os.path.join(\"model-1\", \"params.yaml\"): {\n                \"train.epochs\": 2,\n                \"prepare.nums\": 10,\n            }\n        },\n        \"build@2\": {\n            os.path.join(\"model-2\", \"params.yaml\"): {\n                \"train.epochs\": 3,\n                \"prepare.nums\": 20,\n            }\n        },\n        \"build@3\": {\n            os.path.join(\"model-3\", \"params.yaml\"): {\n                \"train.epochs\": 4,\n                \"prepare.nums\": 30,\n            }\n        },\n        \"build@4\": {\n            os.path.join(\"model-4\", \"params.yaml\"): {\n                \"train.epochs\": 5,\n                \"prepare.nums\": 40,\n            }\n        },\n    }\n    assert resolver.context.imports == {\n        str(tmp_dir / DEFAULT_PARAMS_FILE): None\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_do_syntax_is_checked_once_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_foreach.py_test_foreach_do_syntax_is_checked_once_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_foreach.py", "file_name": "test_foreach.py", "file_type": "text/x-python", "category": "test", "start_line": 397, "end_line": 420, "span_ids": ["test_foreach_data_is_only_resolved_once", "test_foreach_do_syntax_is_checked_once"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_foreach_do_syntax_is_checked_once(tmp_dir, dvc, mocker):\n    do_def = {\"cmd\": \"python script.py --epochs ${item}\"}\n    data = {\"foreach\": [0, 1, 2, 3, 4], \"do\": do_def}\n    definition = ForeachDefinition(\n        DataResolver(dvc, tmp_dir, {}), Context(), \"build\", data\n    )\n    mock = mocker.patch(\"dvc.parsing.check_syntax_errors\", return_value=True)\n    definition.resolve_all()\n\n    mock.assert_called_once_with(do_def, \"build\", \"dvc.yaml\")\n\n\ndef test_foreach_data_is_only_resolved_once(tmp_dir, dvc, mocker):\n    context = Context(models=[\"foo\", \"bar\", \"baz\"])\n    data = {\"foreach\": \"${models}\", \"do\": {}}\n    definition = ForeachDefinition(\n        DataResolver(dvc, tmp_dir, {}), context, \"build\", data\n    )\n    mock = mocker.spy(definition, \"_resolve_foreach_data\")\n\n    definition.resolve_all()\n\n    mock.assert_called_once_with()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_from_copy_import_deepcopy_assert_stage_equal.assert_d1_d2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_from_copy_import_deepcopy_assert_stage_equal.assert_d1_d2", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 29, "span_ids": ["imports", "assert_stage_equal"], "tokens": 206}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from copy import deepcopy\n\nimport pytest\n\nfrom dvc.dependency import _merge_params\nfrom dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver\nfrom dvc.parsing.context import recurse_not_a_node\nfrom dvc.path_info import PathInfo\nfrom dvc.utils.serialize import dump_json, dump_yaml\n\nfrom . import (\n    CONTEXT_DATA,\n    RESOLVED_DVC_YAML_DATA,\n    TEMPLATED_DVC_YAML_DATA,\n    USED_VARS,\n)\n\n\ndef assert_stage_equal(d1, d2):\n    \"\"\"Keeps the params section in order, and then checks for equality.\"\"\"\n    for d in [d1, d2]:\n        assert recurse_not_a_node(d)\n        for _, stage_d in d.get(\"stages\", {}).items():\n            params = _merge_params(stage_d.get(\"params\", []))\n            for k in params:\n                params[k] = sorted(params[k])\n            if params:\n                stage_d[\"params\"] = params\n    assert d1 == d2", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_simple_test_simple.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_simple_test_simple.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 32, "end_line": 41, "span_ids": ["test_simple"], "tokens": 113}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_simple(tmp_dir, dvc):\n    dump_yaml(tmp_dir / DEFAULT_PARAMS_FILE, CONTEXT_DATA)\n    resolver = DataResolver(\n        dvc, PathInfo(str(tmp_dir)), deepcopy(TEMPLATED_DVC_YAML_DATA)\n    )\n    assert_stage_equal(resolver.resolve(), deepcopy(RESOLVED_DVC_YAML_DATA))\n    assert resolver.tracked_vars == {\n        \"stage1\": {DEFAULT_PARAMS_FILE: USED_VARS[\"stage1\"]},\n        \"stage2\": {DEFAULT_PARAMS_FILE: USED_VARS[\"stage2\"]},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_import_test_vars_import.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_import_test_vars_import.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 44, "end_line": 59, "span_ids": ["test_vars_import"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_vars_import(tmp_dir, dvc):\n    \"\"\"\n    Test that different file can be loaded using `vars`\n    instead of default params.yaml.\n    \"\"\"\n    dump_yaml(tmp_dir / \"params2.yaml\", CONTEXT_DATA)\n    d = deepcopy(TEMPLATED_DVC_YAML_DATA)\n    d[\"vars\"] = [\"params2.yaml\"]\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n\n    resolved_data = deepcopy(RESOLVED_DVC_YAML_DATA)\n    assert_stage_equal(resolver.resolve(), resolved_data)\n    assert resolver.tracked_vars == {\n        \"stage1\": {\"params2.yaml\": USED_VARS[\"stage1\"]},\n        \"stage2\": {\"params2.yaml\": USED_VARS[\"stage2\"]},\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_and_params_import_test_vars_and_params_import.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_and_params_import_test_vars_and_params_import.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 62, "end_line": 79, "span_ids": ["test_vars_and_params_import"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_vars_and_params_import(tmp_dir, dvc):\n    \"\"\"\n    Test that vars and params are both merged together for interpolation,\n    whilst tracking the \"used\" variables from params.\n    \"\"\"\n    d = {\n        \"vars\": [DEFAULT_PARAMS_FILE, {\"dict\": {\"foo\": \"foobar\"}}],\n        \"stages\": {\"stage1\": {\"cmd\": \"echo ${dict.foo} ${dict.bar}\"}},\n    }\n    dump_yaml(tmp_dir / DEFAULT_PARAMS_FILE, {\"dict\": {\"bar\": \"bar\"}})\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n\n    assert_stage_equal(\n        resolver.resolve(), {\"stages\": {\"stage1\": {\"cmd\": \"echo foobar bar\"}}}\n    )\n    assert resolver.tracked_vars == {\n        \"stage1\": {DEFAULT_PARAMS_FILE: {\"dict.bar\": \"bar\"}}\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_stage_with_wdir_test_stage_with_wdir.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_stage_with_wdir_test_stage_with_wdir.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 82, "end_line": 120, "span_ids": ["test_stage_with_wdir"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_stage_with_wdir(tmp_dir, dvc):\n    \"\"\"\n    Test that params file from wdir are also loaded\n    \"\"\"\n    d = {\n        \"stages\": {\n            \"stage1\": {\n                \"cmd\": \"echo ${dict.foo} ${dict.bar}\",\n                \"params\": [\"value1\"],\n                \"wdir\": \"data\",\n                \"vars\": [DEFAULT_PARAMS_FILE],\n            },\n        },\n    }\n\n    data_dir = tmp_dir / \"data\"\n    data_dir.mkdir()\n    dump_yaml(tmp_dir / DEFAULT_PARAMS_FILE, {\"dict\": {\"bar\": \"bar\"}})\n    dump_json(data_dir / DEFAULT_PARAMS_FILE, {\"dict\": {\"foo\": \"foo\"}})\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n\n    assert_stage_equal(\n        resolver.resolve(),\n        {\n            \"stages\": {\n                \"stage1\": {\n                    \"cmd\": \"echo foo bar\",\n                    \"wdir\": \"data\",\n                    \"params\": [\"value1\"],\n                }\n            }\n        },\n    )\n    assert resolver.tracked_vars == {\n        \"stage1\": {\n            str(PathInfo(\"data\") / DEFAULT_PARAMS_FILE): {\"dict.foo\": \"foo\"},\n            DEFAULT_PARAMS_FILE: {\"dict.bar\": \"bar\"},\n        }\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_with_templated_wdir_test_with_templated_wdir.assert_resolver_context_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_with_templated_wdir_test_with_templated_wdir.assert_resolver_context_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 123, "end_line": 165, "span_ids": ["test_with_templated_wdir"], "tokens": 331}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_with_templated_wdir(tmp_dir, dvc):\n    \"\"\"\n    Test that params from the resolved wdir are still loaded\n    and is used in the interpolation.\n    \"\"\"\n    d = {\n        \"stages\": {\n            \"stage1\": {\n                \"cmd\": \"echo ${dict.foo} ${dict.bar}\",\n                \"params\": [\"value1\"],\n                \"wdir\": \"${dict.ws}\",\n                \"vars\": [DEFAULT_PARAMS_FILE],\n            },\n        },\n    }\n    dump_yaml(\n        tmp_dir / DEFAULT_PARAMS_FILE, {\"dict\": {\"bar\": \"bar\", \"ws\": \"data\"}}\n    )\n    data_dir = tmp_dir / \"data\"\n    data_dir.mkdir()\n    dump_json(data_dir / DEFAULT_PARAMS_FILE, {\"dict\": {\"foo\": \"foo\"}})\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n\n    assert_stage_equal(\n        resolver.resolve(),\n        {\n            \"stages\": {\n                \"stage1\": {\n                    \"cmd\": \"echo foo bar\",\n                    \"wdir\": \"data\",\n                    \"params\": [\"value1\"],\n                }\n            }\n        },\n    )\n    assert resolver.tracked_vars == {\n        \"stage1\": {\n            str(PathInfo(\"data\") / DEFAULT_PARAMS_FILE): {\"dict.foo\": \"foo\"},\n            DEFAULT_PARAMS_FILE: {\"dict.bar\": \"bar\", \"dict.ws\": \"data\"},\n        }\n    }\n    assert resolver.context.imports == {str(tmp_dir / \"params.yaml\"): None}\n    assert resolver.context == {\"dict\": {\"bar\": \"bar\", \"ws\": \"data\"}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_resolve_local_tries_to_load_globally_used_files_test_resolve_local_tries_to_load_globally_used_files.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_resolve_local_tries_to_load_globally_used_files_test_resolve_local_tries_to_load_globally_used_files.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 168, "end_line": 194, "span_ids": ["test_resolve_local_tries_to_load_globally_used_files"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_resolve_local_tries_to_load_globally_used_files(tmp_dir, dvc):\n    iterable = {\"bar\": \"bar\", \"foo\": \"foo\"}\n    dump_json(tmp_dir / \"params.json\", iterable)\n\n    d = {\n        \"vars\": [\"params.json\"],\n        \"stages\": {\n            \"build\": {\n                \"cmd\": \"command --value ${bar}\",\n                \"params\": [{\"params.json\": [\"foo\"]}],\n                \"vars\": [\"params.json\"],\n            },\n        },\n    }\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n    assert_stage_equal(\n        resolver.resolve(),\n        {\n            \"stages\": {\n                \"build\": {\n                    \"cmd\": \"command --value bar\",\n                    \"params\": [{\"params.json\": [\"foo\"]}],\n                },\n            }\n        },\n    )\n    assert resolver.tracked_vars == {\"build\": {\"params.json\": {\"bar\": \"bar\"}}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_resolve_local_tries_to_load_globally_used_params_yaml_test_resolve_local_tries_to_load_globally_used_params_yaml.assert_resolver_tracked_v": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_resolve_local_tries_to_load_globally_used_params_yaml_test_resolve_local_tries_to_load_globally_used_params_yaml.assert_resolver_tracked_v", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 197, "end_line": 222, "span_ids": ["test_resolve_local_tries_to_load_globally_used_params_yaml"], "tokens": 187}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_resolve_local_tries_to_load_globally_used_params_yaml(tmp_dir, dvc):\n    iterable = {\"bar\": \"bar\", \"foo\": \"foo\"}\n    dump_yaml(tmp_dir / \"params.yaml\", iterable)\n\n    d = {\n        \"stages\": {\n            \"build\": {\n                \"cmd\": \"command --value ${bar}\",\n                \"params\": [{\"params.yaml\": [\"foo\"]}],\n                \"vars\": [\"params.yaml\"],\n            },\n        },\n    }\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n    assert_stage_equal(\n        resolver.resolve(),\n        {\n            \"stages\": {\n                \"build\": {\n                    \"cmd\": \"command --value bar\",\n                    \"params\": [{\"params.yaml\": [\"foo\"]}],\n                },\n            }\n        },\n    )\n    assert resolver.tracked_vars == {\"build\": {\"params.yaml\": {\"bar\": \"bar\"}}}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_relpath_overwrite_test_vars_relpath_overwrite.assert_resolver_context_i": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_relpath_overwrite_test_vars_relpath_overwrite.assert_resolver_context_i", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 225, "end_line": 240, "span_ids": ["test_vars_relpath_overwrite"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_vars_relpath_overwrite(tmp_dir, dvc):\n    iterable = {\"bar\": \"bar\", \"foo\": \"foo\"}\n    dump_yaml(tmp_dir / \"params.yaml\", iterable)\n    d = {\n        \"vars\": [\"params.yaml\"],\n        \"stages\": {\n            \"build\": {\n                \"wdir\": \"data\",\n                \"cmd\": \"echo ${bar}\",\n                \"vars\": [\"../params.yaml\"],\n            }\n        },\n    }\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n    resolver.resolve()\n    assert resolver.context.imports == {str(tmp_dir / \"params.yaml\"): None}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_load_partial_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_interpolated_entry.py_test_vars_load_partial_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_interpolated_entry.py", "file_name": "test_interpolated_entry.py", "file_type": "text/x-python", "category": "test", "start_line": 243, "end_line": 263, "span_ids": ["test_vars_load_partial"], "tokens": 179}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"local\", [True, False])\n@pytest.mark.parametrize(\n    \"vars_\",\n    [\n        [\"test_params.yaml:bar\", \"test_params.yaml:foo\"],\n        [\"test_params.yaml:foo,bar\"],\n        [\"test_params.yaml\"],\n        [\"test_params.yaml\", \"test_params.yaml\"],\n    ],\n)\ndef test_vars_load_partial(tmp_dir, dvc, local, vars_):\n    iterable = {\"bar\": \"bar\", \"foo\": \"foo\"}\n    dump_yaml(tmp_dir / \"test_params.yaml\", iterable)\n    d = {\"stages\": {\"build\": {\"cmd\": \"echo ${bar}\"}}}\n    if local:\n        d[\"stages\"][\"build\"][\"vars\"] = vars_\n    else:\n        d[\"vars\"] = vars_\n    resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)\n    resolver.resolve()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_from_copy_import_deepcopy_test_partial_vars_doesnot_exist.assert_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_from_copy_import_deepcopy_test_partial_vars_doesnot_exist.assert_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_resolver.py", "file_name": "test_resolver.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 79, "span_ids": ["test_default_params_file", "imports", "test_partial_vars_doesnot_exist", "test_no_params_yaml_and_vars", "test_vars_interpolation_errors", "test_local_vars", "test_resolver", "test_load_vars_from_file", "test_default_params_file_not_exist"], "tokens": 643}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from copy import deepcopy\n\nimport pytest\n\nfrom dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver, ResolveError\nfrom dvc.parsing.context import Context\nfrom dvc.utils.serialize import dump_json, dump_yaml\n\nfrom . import CONTEXT_DATA, RESOLVED_DVC_YAML_DATA, TEMPLATED_DVC_YAML_DATA\n\nDATA = {\"models\": {\"bar\": \"bar\", \"foo\": \"foo\"}}\n\n\ndef test_resolver(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir, TEMPLATED_DVC_YAML_DATA)\n    resolver.context.merge_update(Context(CONTEXT_DATA))\n    assert resolver.resolve() == RESOLVED_DVC_YAML_DATA\n\n\ndef test_default_params_file_not_exist(tmp_dir, dvc):\n    d = {\"vars\": [DATA[\"models\"]]}\n    resolver = DataResolver(dvc, tmp_dir, d)\n    assert resolver.context == d[\"vars\"][0]\n\n\ndef test_no_params_yaml_and_vars(tmp_dir, dvc):\n    resolver = DataResolver(dvc, tmp_dir, {})\n    assert not resolver.context\n\n\ndef test_local_vars(tmp_dir, dvc):\n    resolver = DataResolver(\n        dvc, tmp_dir, {\"vars\": [{\"foo\": \"bar\", \"bar\": \"foo\"}]}\n    )\n    assert resolver.context == {\"foo\": \"bar\", \"bar\": \"foo\"}\n\n\n@pytest.mark.parametrize(\"vars_\", [\"${file}_params.yaml\", {\"foo\": \"${foo}\"}])\ndef test_vars_interpolation_errors(tmp_dir, dvc, vars_):\n    with pytest.raises(ResolveError) as exc_info:\n        DataResolver(dvc, tmp_dir, {\"vars\": [vars_, {\"bar\": \"foo\"}]})\n    assert (\n        str(exc_info.value)\n        == \"failed to parse 'vars' in 'dvc.yaml': interpolating is not allowed\"\n    )\n\n\n@pytest.mark.parametrize(\n    \"vars_\", [{}, {\"vars\": []}, {\"vars\": [DEFAULT_PARAMS_FILE]}]\n)\ndef test_default_params_file(tmp_dir, dvc, vars_):\n    dump_yaml(DEFAULT_PARAMS_FILE, DATA)\n    resolver = DataResolver(dvc, tmp_dir, vars_)\n    assert resolver.context == DATA\n\n\ndef test_load_vars_from_file(tmp_dir, dvc):\n    dump_yaml(DEFAULT_PARAMS_FILE, DATA)\n\n    datasets = {\"datasets\": [\"foo\", \"bar\"]}\n    dump_json(\"params.json\", datasets)\n    d = {\"vars\": [DEFAULT_PARAMS_FILE, \"params.json\"]}\n    resolver = DataResolver(dvc, tmp_dir, d)\n\n    expected = deepcopy(DATA)\n    expected.update(datasets)\n    assert resolver.context == expected\n\n\ndef test_partial_vars_doesnot_exist(tmp_dir, dvc):\n    dump_yaml(\"test_params.yaml\", {\"sub1\": \"sub1\"})\n\n    with pytest.raises(ResolveError) as exc_info:\n        DataResolver(dvc, tmp_dir, {\"vars\": [\"test_params.yaml:sub2\"]})\n\n    assert (\n        str(exc_info.value) == \"failed to parse 'vars' in 'dvc.yaml': \"\n        \"could not find 'sub2' in 'test_params.yaml'\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_global_overwrite_error_on_imports_test_global_overwrite_error_on_imports.assert_str_exc_info_value": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_global_overwrite_error_on_imports_test_global_overwrite_error_on_imports.assert_str_exc_info_value", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_resolver.py", "file_name": "test_resolver.py", "file_type": "text/x-python", "category": "test", "start_line": 82, "end_line": 94, "span_ids": ["test_global_overwrite_error_on_imports"], "tokens": 124}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_global_overwrite_error_on_imports(tmp_dir, dvc):\n    dump_yaml(DEFAULT_PARAMS_FILE, DATA)\n    dump_json(\"params.json\", DATA)\n\n    d = {\"vars\": [DEFAULT_PARAMS_FILE, \"params.json\"]}\n    with pytest.raises(ResolveError) as exc_info:\n        DataResolver(dvc, tmp_dir, d)\n\n    assert str(exc_info.value) == (\n        \"failed to parse 'vars' in 'dvc.yaml':\\n\"\n        \"cannot redefine 'models.bar' from 'params.json' \"\n        \"as it already exists in 'params.yaml'\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_global_overwrite_vars_test_global_overwrite_vars.assert_str_exc_info_value": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_global_overwrite_vars_test_global_overwrite_vars.assert_str_exc_info_value", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_resolver.py", "file_name": "test_resolver.py", "file_type": "text/x-python", "category": "test", "start_line": 97, "end_line": 108, "span_ids": ["test_global_overwrite_vars"], "tokens": 108}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_global_overwrite_vars(tmp_dir, dvc):\n    dump_yaml(DEFAULT_PARAMS_FILE, DATA)\n    d = {\"vars\": [DATA]}\n\n    with pytest.raises(ResolveError) as exc_info:\n        DataResolver(dvc, tmp_dir, d)\n\n    assert str(exc_info.value) == (\n        \"failed to parse 'vars' in 'dvc.yaml':\\n\"\n        \"cannot redefine 'models.bar' from 'vars[0]' \"\n        \"as it already exists in 'params.yaml'\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_local_declared_vars_overwrite_test_specified_params_file_not_exist.assert_str_exc_info_value": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_local_declared_vars_overwrite_test_specified_params_file_not_exist.assert_str_exc_info_value", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_resolver.py", "file_name": "test_resolver.py", "file_type": "text/x-python", "category": "test", "start_line": 111, "end_line": 133, "span_ids": ["test_specified_params_file_not_exist", "test_local_declared_vars_overwrite"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_local_declared_vars_overwrite(tmp_dir, dvc):\n    dump_yaml(DEFAULT_PARAMS_FILE, DATA)\n\n    d = {\"vars\": [DATA[\"models\"], DATA[\"models\"]]}\n    with pytest.raises(ResolveError) as exc_info:\n        DataResolver(dvc, tmp_dir, d)\n\n    assert str(exc_info.value) == (\n        \"failed to parse 'vars' in 'dvc.yaml':\\n\"\n        \"cannot redefine 'bar' from 'vars[1]' \"\n        \"as it already exists in 'vars[0]'\"\n    )\n\n\ndef test_specified_params_file_not_exist(tmp_dir, dvc):\n    d = {\"vars\": [\"not_existing_params.yaml\"]}\n    with pytest.raises(ResolveError) as exc_info:\n        DataResolver(dvc, tmp_dir, d)\n\n    assert str(exc_info.value) == (\n        \"failed to parse 'vars' in 'dvc.yaml': \"\n        \"'not_existing_params.yaml' does not exist\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_vars_already_loaded_message_test_vars_already_loaded_message.assert_partially_in_str": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_vars_already_loaded_message_test_vars_already_loaded_message.assert_partially_in_str", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_resolver.py", "file_name": "test_resolver.py", "file_type": "text/x-python", "category": "test", "start_line": 136, "end_line": 157, "span_ids": ["test_vars_already_loaded_message"], "tokens": 209}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"local\", [True, False])\n@pytest.mark.parametrize(\n    \"vars_\",\n    [\n        [\"test_params.yaml\", \"test_params.yaml:sub1\"],\n        [\"test_params.yaml:sub1\", \"test_params.yaml\"],\n        [\"test_params.yaml:sub1\", \"test_params.yaml:sub1,sub2\"],\n    ],\n)\ndef test_vars_already_loaded_message(tmp_dir, dvc, local, vars_):\n    d = {\"stages\": {\"build\": {\"cmd\": \"echo ${sub1} ${sub2}\"}}}\n    dump_yaml(\"test_params.yaml\", {\"sub1\": \"sub1\", \"sub2\": \"sub2\"})\n    if not local:\n        d[\"vars\"] = vars_\n    else:\n        d[\"stages\"][\"build\"][\"vars\"] = vars_\n\n    with pytest.raises(ResolveError) as exc_info:\n        resolver = DataResolver(dvc, tmp_dir, d)\n        resolver.resolve()\n\n    assert \"partially\" in str(exc_info.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_local_overwrite_error_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/parsing/test_resolver.py_test_local_overwrite_error_", "embedding": null, "metadata": {"file_path": "tests/func/parsing/test_resolver.py", "file_name": "test_resolver.py", "file_type": "text/x-python", "category": "test", "start_line": 160, "end_line": 178, "span_ids": ["test_local_overwrite_error"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"vars_, loc\", [(DATA, \"build.vars[0]\"), (\"params.json\", \"params.json\")],\n)\ndef test_local_overwrite_error(tmp_dir, dvc, vars_, loc):\n    dump_yaml(DEFAULT_PARAMS_FILE, DATA)\n    dump_json(\"params.json\", DATA)\n\n    d = {\"stages\": {\"build\": {\"cmd\": \"echo ${models.foo}\", \"vars\": [vars_]}}}\n\n    resolver = DataResolver(dvc, tmp_dir, d)\n    with pytest.raises(ResolveError) as exc_info:\n        resolver.resolve()\n\n    assert str(exc_info.value) == (\n        \"failed to parse stage 'build' in 'dvc.yaml':\\n\"\n        f\"cannot redefine 'models.bar' from '{loc}' \"\n        \"as it already exists in 'params.yaml'\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/conftest.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/conftest.py__", "embedding": null, "metadata": {"file_path": "tests/func/plots/conftest.py", "file_name": "conftest.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 13, "span_ids": ["imports", "custom_template"], "tokens": 57}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import shutil\n\nimport pytest\n\n\n@pytest.fixture()\ndef custom_template(tmp_dir, dvc):\n    template = tmp_dir / \"custom_template.json\"\n    shutil.copy(\n        tmp_dir / \".dvc\" / \"plots\" / \"default.json\", template,\n    )\n    return template", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_diff.py_json_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_diff.py_json_", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 57, "span_ids": ["test_diff_dirty", "imports"], "tokens": 575}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\n\nfrom dvc.repo.plots.data import PlotData\nfrom tests.func.plots.utils import _write_json\n\n\ndef test_diff_dirty(tmp_dir, scm, dvc, run_copy_metrics):\n    metric_1 = [{\"y\": 2}, {\"y\": 3}]\n    _write_json(tmp_dir, metric_1, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"init\",\n    )\n\n    metric_2 = [{\"y\": 3}, {\"y\": 5}]\n    _write_json(tmp_dir, metric_2, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"second\",\n    )\n\n    metric_3 = [{\"y\": 5}, {\"y\": 6}]\n    _write_json(tmp_dir, metric_3, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\", \"metric.json\", plots_no_cache=[\"metric.json\"]\n    )\n\n    plot_string = dvc.plots.diff(props={\"fields\": {\"y\"}})[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"y\": 3, PlotData.INDEX_FIELD: 0, \"rev\": \"HEAD\"},\n        {\"y\": 5, PlotData.INDEX_FIELD: 1, \"rev\": \"HEAD\"},\n        {\"y\": 5, PlotData.INDEX_FIELD: 0, \"rev\": \"workspace\"},\n        {\"y\": 6, PlotData.INDEX_FIELD: 1, \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"y\"\n\n    _write_json(tmp_dir, [{\"y\": 7}, {\"y\": 8}], \"metric.json\")\n\n    plot_string = dvc.plots.diff(props={\"fields\": {\"y\"}})[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"y\": 3, PlotData.INDEX_FIELD: 0, \"rev\": \"HEAD\"},\n        {\"y\": 5, PlotData.INDEX_FIELD: 1, \"rev\": \"HEAD\"},\n        {\"y\": 7, PlotData.INDEX_FIELD: 0, \"rev\": \"workspace\"},\n        {\"y\": 8, PlotData.INDEX_FIELD: 1, \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"y\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_modify.py_pytest_test_plots_modify_existing_template.assert_stage_outs_0_plot": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_modify.py_pytest_test_plots_modify_existing_template.assert_stage_outs_0_plot", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_modify.py", "file_name": "test_modify.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 26, "span_ids": ["imports", "test_plots_modify_existing_template"], "tokens": 204}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.dvcfile import PIPELINE_LOCK\nfrom dvc.repo.plots import PropsNotFoundError\nfrom dvc.repo.plots.template import TemplateNotFoundError\nfrom dvc.utils import relpath\nfrom tests.func.plots.utils import _write_json\n\n\ndef test_plots_modify_existing_template(\n    tmp_dir, dvc, run_copy_metrics, custom_template\n):\n    metric = [{\"a\": 1, \"b\": 2}, {\"a\": 2, \"b\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    stage = run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        name=\"copy-metrics\",\n        single_stage=False,\n    )\n    dvc.plots.modify(\n        \"metric.json\", props={\"template\": relpath(custom_template)}\n    )\n    stage = stage.reload()\n    assert stage.outs[0].plot == {\"template\": relpath(custom_template)}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_modify.py_test_plots_modify_should_not_change_lockfile_test_plots_modify_should_not_change_lockfile.assert_not_tmp_dir_PIP": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_modify.py_test_plots_modify_should_not_change_lockfile_test_plots_modify_should_not_change_lockfile.assert_not_tmp_dir_PIP", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_modify.py", "file_name": "test_modify.py", "file_type": "text/x-python", "category": "test", "start_line": 29, "end_line": 45, "span_ids": ["test_plots_modify_should_not_change_lockfile"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plots_modify_should_not_change_lockfile(\n    tmp_dir, dvc, run_copy_metrics, custom_template\n):\n    _write_json(tmp_dir, [{\"a\": 1, \"b\": 2}], \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        name=\"copy-metrics\",\n        single_stage=False,\n    )\n\n    (tmp_dir / PIPELINE_LOCK).unlink()\n    dvc.plots.modify(\n        \"metric.json\", props={\"template\": relpath(custom_template)}\n    )\n    assert not (tmp_dir / PIPELINE_LOCK).exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_modify.py_test_plots_modify_not_existing_template_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_modify.py_test_plots_modify_not_existing_template_", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_modify.py", "file_name": "test_modify.py", "file_type": "text/x-python", "category": "test", "start_line": 48, "end_line": 70, "span_ids": ["test_unset_nonexistent", "test_plots_modify_not_existing_template"], "tokens": 166}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plots_modify_not_existing_template(dvc):\n    with pytest.raises(TemplateNotFoundError):\n        dvc.plots.modify(\n            \"metric.json\", props={\"template\": \"not-existing-template.json\"}\n        )\n\n\ndef test_unset_nonexistent(tmp_dir, dvc, run_copy_metrics, custom_template):\n    metric = [{\"a\": 1, \"b\": 2}, {\"a\": 2, \"b\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        name=\"copy-metrics\",\n        single_stage=False,\n    )\n\n    with pytest.raises(PropsNotFoundError):\n        dvc.plots.modify(\n            \"metric.json\", unset=[\"nonexistent\"],\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_json_from_tests_func_plots_uti": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_json_from_tests_func_plots_uti", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 31, "span_ids": ["imports"], "tokens": 167}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import json\nimport logging\nimport os\nimport shutil\nfrom collections import OrderedDict\n\nimport pytest\n\nfrom dvc.exceptions import (\n    MetricDoesNotExistError,\n    NoMetricsFoundError,\n    NoMetricsParsedError,\n    OverlappingOutputPathsError,\n)\nfrom dvc.main import main\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\nfrom dvc.repo.plots.data import (\n    JSONPlotData,\n    PlotData,\n    PlotMetricTypeError,\n    YAMLPlotData,\n)\nfrom dvc.repo.plots.template import (\n    BadTemplateError,\n    NoFieldInDataError,\n    TemplateNotFoundError,\n)\nfrom dvc.utils.fs import remove\nfrom dvc.utils.serialize import dump_yaml, dumps_yaml, modify_yaml\nfrom tests.func.plots.utils import _write_csv, _write_json", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_csv_one_column_test_plot_csv_one_column.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_csv_one_column_test_plot_csv_one_column.None_5", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 34, "end_line": 59, "span_ids": ["test_plot_csv_one_column"], "tokens": 273}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_csv_one_column(tmp_dir, scm, dvc, run_copy_metrics):\n    # no header\n    metric = [{\"val\": 2}, {\"val\": 3}]\n    _write_csv(metric, \"metric_t.csv\", header=False)\n    run_copy_metrics(\n        \"metric_t.csv\", \"metric.csv\", plots_no_cache=[\"metric.csv\"]\n    )\n\n    props = {\n        \"header\": False,\n        \"x_label\": \"x_title\",\n        \"y_label\": \"y_title\",\n        \"title\": \"mytitle\",\n    }\n    plot_string = dvc.plots.show(props=props)[\"metric.csv\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"title\"] == \"mytitle\"\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"0\": \"2\", PlotData.INDEX_FIELD: 0, \"rev\": \"workspace\"},\n        {\"0\": \"3\", PlotData.INDEX_FIELD: 1, \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"0\"\n    assert plot_content[\"encoding\"][\"x\"][\"title\"] == \"x_title\"\n    assert plot_content[\"encoding\"][\"y\"][\"title\"] == \"y_title\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_csv_multiple_columns_test_plot_csv_multiple_columns.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_csv_multiple_columns_test_plot_csv_multiple_columns.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 62, "end_line": 92, "span_ids": ["test_plot_csv_multiple_columns"], "tokens": 263}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_csv_multiple_columns(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [\n        OrderedDict([(\"first_val\", 100), (\"second_val\", 100), (\"val\", 2)]),\n        OrderedDict([(\"first_val\", 200), (\"second_val\", 300), (\"val\", 3)]),\n    ]\n    _write_csv(metric, \"metric_t.csv\")\n    run_copy_metrics(\n        \"metric_t.csv\", \"metric.csv\", plots_no_cache=[\"metric.csv\"]\n    )\n\n    plot_string = dvc.plots.show()[\"metric.csv\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\n            \"val\": \"2\",\n            PlotData.INDEX_FIELD: 0,\n            \"rev\": \"workspace\",\n            \"first_val\": \"100\",\n            \"second_val\": \"100\",\n        },\n        {\n            \"val\": \"3\",\n            PlotData.INDEX_FIELD: 1,\n            \"rev\": \"workspace\",\n            \"first_val\": \"200\",\n            \"second_val\": \"300\",\n        },\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"val\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_csv_choose_axes_test_plot_csv_choose_axes.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_csv_choose_axes_test_plot_csv_choose_axes.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 95, "end_line": 124, "span_ids": ["test_plot_csv_choose_axes"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_csv_choose_axes(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [\n        OrderedDict([(\"first_val\", 100), (\"second_val\", 100), (\"val\", 2)]),\n        OrderedDict([(\"first_val\", 200), (\"second_val\", 300), (\"val\", 3)]),\n    ]\n    _write_csv(metric, \"metric_t.csv\")\n    run_copy_metrics(\n        \"metric_t.csv\", \"metric.csv\", plots_no_cache=[\"metric.csv\"]\n    )\n\n    props = {\"x\": \"first_val\", \"y\": \"second_val\"}\n    plot_string = dvc.plots.show(props=props)[\"metric.csv\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\n            \"val\": \"2\",\n            \"rev\": \"workspace\",\n            \"first_val\": \"100\",\n            \"second_val\": \"100\",\n        },\n        {\n            \"val\": \"3\",\n            \"rev\": \"workspace\",\n            \"first_val\": \"200\",\n            \"second_val\": \"300\",\n        },\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == \"first_val\"\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"second_val\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_json_single_val_test_plot_json_single_val.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_json_single_val_test_plot_json_single_val.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 127, "end_line": 145, "span_ids": ["test_plot_json_single_val"], "tokens": 191}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_json_single_val(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [{\"val\": 2}, {\"val\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    plot_string = dvc.plots.show()[\"metric.json\"]\n\n    plot_json = json.loads(plot_string)\n    assert plot_json[\"data\"][\"values\"] == [\n        {\"val\": 2, PlotData.INDEX_FIELD: 0, \"rev\": \"workspace\"},\n        {\"val\": 3, PlotData.INDEX_FIELD: 1, \"rev\": \"workspace\"},\n    ]\n    assert plot_json[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_json[\"encoding\"][\"y\"][\"field\"] == \"val\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_json_multiple_val_test_plot_json_multiple_val.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_json_multiple_val_test_plot_json_multiple_val.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 148, "end_line": 179, "span_ids": ["test_plot_json_multiple_val"], "tokens": 238}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_json_multiple_val(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [\n        {\"first_val\": 100, \"val\": 2},\n        {\"first_val\": 200, \"val\": 3},\n    ]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    plot_string = dvc.plots.show()[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\n            \"val\": 2,\n            PlotData.INDEX_FIELD: 0,\n            \"first_val\": 100,\n            \"rev\": \"workspace\",\n        },\n        {\n            \"val\": 3,\n            PlotData.INDEX_FIELD: 1,\n            \"first_val\": 200,\n            \"rev\": \"workspace\",\n        },\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"val\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_confusion_test_plot_confusion.None_3": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_confusion_test_plot_confusion.None_3", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 182, "end_line": 208, "span_ids": ["test_plot_confusion"], "tokens": 253}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_confusion(tmp_dir, dvc, run_copy_metrics):\n    confusion_matrix = [\n        {\"predicted\": \"B\", \"actual\": \"A\"},\n        {\"predicted\": \"A\", \"actual\": \"A\"},\n    ]\n    _write_json(tmp_dir, confusion_matrix, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    props = {\"template\": \"confusion\", \"x\": \"predicted\", \"y\": \"actual\"}\n    plot_string = dvc.plots.show(props=props)[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"predicted\": \"B\", \"actual\": \"A\", \"rev\": \"workspace\"},\n        {\"predicted\": \"A\", \"actual\": \"A\", \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"spec\"][\"transform\"][0][\"groupby\"] == [\n        \"actual\",\n        \"predicted\",\n    ]\n    assert plot_content[\"spec\"][\"encoding\"][\"x\"][\"field\"] == \"predicted\"\n    assert plot_content[\"spec\"][\"encoding\"][\"y\"][\"field\"] == \"actual\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_confusion_normalized_test_plot_confusion_normalized.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_confusion_normalized_test_plot_confusion_normalized.None_4", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 242, "span_ids": ["test_plot_confusion_normalized"], "tokens": 282}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_confusion_normalized(tmp_dir, dvc, run_copy_metrics):\n    confusion_matrix = [\n        {\"predicted\": \"B\", \"actual\": \"A\"},\n        {\"predicted\": \"A\", \"actual\": \"A\"},\n    ]\n    _write_json(tmp_dir, confusion_matrix, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    props = {\n        \"template\": \"confusion_normalized\",\n        \"x\": \"predicted\",\n        \"y\": \"actual\",\n    }\n    plot_string = dvc.plots.show(props=props)[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"predicted\": \"B\", \"actual\": \"A\", \"rev\": \"workspace\"},\n        {\"predicted\": \"A\", \"actual\": \"A\", \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"spec\"][\"transform\"][0][\"groupby\"] == [\n        \"actual\",\n        \"predicted\",\n    ]\n    assert plot_content[\"spec\"][\"transform\"][1][\"groupby\"] == [\"rev\", \"actual\"]\n    assert plot_content[\"spec\"][\"encoding\"][\"x\"][\"field\"] == \"predicted\"\n    assert plot_content[\"spec\"][\"encoding\"][\"y\"][\"field\"] == \"actual\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_multiple_revs_default_test_plot_multiple_revs_default.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_multiple_revs_default_test_plot_multiple_revs_default.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 245, "end_line": 288, "span_ids": ["test_plot_multiple_revs_default"], "tokens": 451}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_multiple_revs_default(tmp_dir, scm, dvc, run_copy_metrics):\n    metric_1 = [{\"y\": 2}, {\"y\": 3}]\n    _write_json(tmp_dir, metric_1, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"init\",\n        tag=\"v1\",\n    )\n\n    metric_2 = [{\"y\": 3}, {\"y\": 5}]\n    _write_json(tmp_dir, metric_2, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"second\",\n        tag=\"v2\",\n    )\n\n    metric_3 = [{\"y\": 5}, {\"y\": 6}]\n    _write_json(tmp_dir, metric_3, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"third\",\n    )\n    plot_string = dvc.plots.show(\n        revs=[\"HEAD\", \"v2\", \"v1\"], props={\"fields\": {\"y\"}}\n    )[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"y\": 5, PlotData.INDEX_FIELD: 0, \"rev\": \"HEAD\"},\n        {\"y\": 6, PlotData.INDEX_FIELD: 1, \"rev\": \"HEAD\"},\n        {\"y\": 3, PlotData.INDEX_FIELD: 0, \"rev\": \"v2\"},\n        {\"y\": 5, PlotData.INDEX_FIELD: 1, \"rev\": \"v2\"},\n        {\"y\": 2, PlotData.INDEX_FIELD: 0, \"rev\": \"v1\"},\n        {\"y\": 3, PlotData.INDEX_FIELD: 1, \"rev\": \"v1\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"y\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_multiple_revs_test_plot_multiple_revs.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_multiple_revs_test_plot_multiple_revs.None_4", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 291, "end_line": 336, "span_ids": ["test_plot_multiple_revs"], "tokens": 500}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_multiple_revs(tmp_dir, scm, dvc, run_copy_metrics):\n    templates_dir = dvc.plots.templates.templates_dir\n    shutil.copy(\n        os.path.join(templates_dir, \"default.json\"),\n        os.path.join(templates_dir, \"template.json\"),\n    )\n\n    metric_1 = [{\"y\": 2}, {\"y\": 3}]\n    _write_json(tmp_dir, metric_1, \"metric_t.json\")\n    stage = run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"init\",\n        tag=\"v1\",\n    )\n\n    metric_2 = [{\"y\": 3}, {\"y\": 5}]\n    _write_json(tmp_dir, metric_2, \"metric_t.json\")\n    assert dvc.reproduce(stage.addressing) == [stage]\n    scm.add([\"metric.json\", stage.path])\n    scm.commit(\"second\")\n    scm.tag(\"v2\")\n\n    metric_3 = [{\"y\": 5}, {\"y\": 6}]\n    _write_json(tmp_dir, metric_3, \"metric_t.json\")\n    assert dvc.reproduce(stage.addressing) == [stage]\n    scm.add([\"metric.json\", stage.path])\n    scm.commit(\"third\")\n\n    props = {\"template\": \"template.json\"}\n    plot_string = dvc.plots.show(revs=[\"HEAD\", \"v2\", \"v1\"], props=props)[\n        \"metric.json\"\n    ]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"y\": 5, PlotData.INDEX_FIELD: 0, \"rev\": \"HEAD\"},\n        {\"y\": 6, PlotData.INDEX_FIELD: 1, \"rev\": \"HEAD\"},\n        {\"y\": 3, PlotData.INDEX_FIELD: 0, \"rev\": \"v2\"},\n        {\"y\": 5, PlotData.INDEX_FIELD: 1, \"rev\": \"v2\"},\n        {\"y\": 2, PlotData.INDEX_FIELD: 0, \"rev\": \"v1\"},\n        {\"y\": 3, PlotData.INDEX_FIELD: 1, \"rev\": \"v1\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"y\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_even_if_metric_missing_test_plot_even_if_metric_missing.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_even_if_metric_missing_test_plot_even_if_metric_missing.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 339, "end_line": 366, "span_ids": ["test_plot_even_if_metric_missing"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_even_if_metric_missing(\n    tmp_dir, scm, dvc, caplog, run_copy_metrics\n):\n    tmp_dir.scm_gen(\"some_file\", \"content\", commit=\"there is no metric\")\n    scm.tag(\"v1\")\n\n    metric = [{\"y\": 2}, {\"y\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"there is metric\",\n        tag=\"v2\",\n    )\n\n    caplog.clear()\n    with caplog.at_level(logging.WARNING, \"dvc\"):\n        plots = dvc.plots.show(revs=[\"v1\", \"v2\"], targets=[\"metric.json\"])\n        assert \"'metric.json' was not found at: 'v1'.\" in caplog.text\n\n    plot_content = json.loads(plots[\"metric.json\"])\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"y\": 2, PlotData.INDEX_FIELD: 0, \"rev\": \"v2\"},\n        {\"y\": 3, PlotData.INDEX_FIELD: 1, \"rev\": \"v2\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"y\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_cache_missing_test_plot_cache_missing.assert_plot_content_data": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_cache_missing_test_plot_cache_missing.assert_plot_content_data", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 369, "end_line": 398, "span_ids": ["test_plot_cache_missing"], "tokens": 289}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_cache_missing(tmp_dir, scm, dvc, caplog, run_copy_metrics):\n    metric = [{\"y\": 2}, {\"y\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    stage = run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots=[\"metric.json\"],\n        commit=\"there is metric\",\n    )\n    scm.tag(\"v1\")\n\n    # Make a different plot and then remove its datafile\n    metric = [{\"y\": 3}, {\"y\": 4}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    stage = run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots=[\"metric.json\"],\n        commit=\"there is an another metric\",\n    )\n    scm.tag(\"v2\")\n    remove(stage.outs[0].fspath)\n    remove(stage.outs[0].cache_path)\n\n    plots = dvc.plots.show(revs=[\"v1\", \"v2\"], targets=[\"metric.json\"])\n    plot_content = json.loads(plots[\"metric.json\"])\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"y\": 2, PlotData.INDEX_FIELD: 0, \"rev\": \"v1\"},\n        {\"y\": 3, PlotData.INDEX_FIELD: 1, \"rev\": \"v1\"},\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_throw_on_no_metric_at_all_test_throw_on_no_metric_at_all.assert_str_error_value_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_throw_on_no_metric_at_all_test_throw_on_no_metric_at_all.assert_str_error_value_", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 401, "end_line": 416, "span_ids": ["test_throw_on_no_metric_at_all"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_throw_on_no_metric_at_all(tmp_dir, scm, dvc, caplog):\n    tmp_dir.scm_gen(\"some_file\", \"content\", commit=\"there is no metric\")\n    scm.tag(\"v1\")\n\n    tmp_dir.gen(\"some_file\", \"make repo dirty\")\n\n    caplog.clear()\n    with pytest.raises(MetricDoesNotExistError) as error, caplog.at_level(\n        logging.WARNING, \"dvc\"\n    ):\n        dvc.plots.show(targets=\"plot.json\", revs=[\"v1\"])\n\n        # do not warn if none found\n        assert len(caplog.messages) == 0\n\n    assert str(error.value) == \"File: 'plot.json' does not exist.\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_custom_template_test_custom_template.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_custom_template_test_custom_template.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 419, "end_line": 439, "span_ids": ["test_custom_template"], "tokens": 227}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_custom_template(tmp_dir, scm, dvc, custom_template, run_copy_metrics):\n    metric = [{\"a\": 1, \"b\": 2}, {\"a\": 2, \"b\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"init\",\n        tag=\"v1\",\n    )\n\n    props = {\"template\": os.fspath(custom_template), \"x\": \"a\", \"y\": \"b\"}\n    plot_string = dvc.plots.show(props=props)[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"a\": 1, \"b\": 2, \"rev\": \"workspace\"},\n        {\"a\": 2, \"b\": 3, \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == \"a\"\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"b\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py__replace_test_should_raise_on_no_template.with_pytest_raises_Templa.dvc_plots_show_metric_js": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py__replace_test_should_raise_on_no_template.with_pytest_raises_Templa.dvc_plots_show_metric_js", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 442, "end_line": 458, "span_ids": ["_replace", "test_should_raise_on_no_template"], "tokens": 134}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _replace(path, src, dst):\n    path.write_text(path.read_text().replace(src, dst))\n\n\ndef test_should_raise_on_no_template(tmp_dir, dvc, run_copy_metrics):\n    metric = [{\"val\": 2}, {\"val\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    with pytest.raises(TemplateNotFoundError):\n        props = {\"template\": \"non_existing_template.json\"}\n        dvc.plots.show(\"metric.json\", props=props)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_bad_template_test_plot_wrong_metric_type.with_pytest_raises_PlotMe.dvc_plots_show_targets_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_bad_template_test_plot_wrong_metric_type.with_pytest_raises_PlotMe.dvc_plots_show_targets_", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 461, "end_line": 488, "span_ids": ["test_plot_wrong_metric_type", "test_bad_template"], "tokens": 215}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_bad_template(tmp_dir, dvc, run_copy_metrics):\n    metric = [{\"val\": 2}, {\"val\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    tmp_dir.gen(\"template.json\", json.dumps({\"a\": \"b\", \"c\": \"d\"}))\n\n    with pytest.raises(BadTemplateError):\n        props = {\"template\": \"template.json\"}\n        dvc.plots.show(\"metric.json\", props=props)\n\n\ndef test_plot_wrong_metric_type(tmp_dir, scm, dvc, run_copy_metrics):\n    tmp_dir.gen(\"metric_t.txt\", \"some text\")\n    run_copy_metrics(\n        \"metric_t.txt\",\n        \"metric.txt\",\n        plots_no_cache=[\"metric.txt\"],\n        commit=\"add text metric\",\n    )\n\n    with pytest.raises(PlotMetricTypeError):\n        dvc.plots.show(targets=[\"metric.txt\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_choose_columns_test_plot_choose_columns.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_choose_columns_test_plot_choose_columns.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 491, "end_line": 518, "span_ids": ["test_plot_choose_columns"], "tokens": 259}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_choose_columns(\n    tmp_dir, scm, dvc, custom_template, run_copy_metrics\n):\n    metric = [{\"a\": 1, \"b\": 2, \"c\": 3}, {\"a\": 2, \"b\": 3, \"c\": 4}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"init\",\n        tag=\"v1\",\n    )\n\n    props = {\n        \"template\": os.fspath(custom_template),\n        \"fields\": {\"b\", \"c\"},\n        \"x\": \"b\",\n        \"y\": \"c\",\n    }\n    plot_string = dvc.plots.show(props=props)[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"b\": 2, \"c\": 3, \"rev\": \"workspace\"},\n        {\"b\": 3, \"c\": 4, \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == \"b\"\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"c\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_default_choose_column_test_plot_default_choose_column.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_default_choose_column_test_plot_default_choose_column.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 521, "end_line": 540, "span_ids": ["test_plot_default_choose_column"], "tokens": 229}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_default_choose_column(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [{\"a\": 1, \"b\": 2, \"c\": 3}, {\"a\": 2, \"b\": 3, \"c\": 4}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"init\",\n        tag=\"v1\",\n    )\n\n    plot_string = dvc.plots.show(props={\"fields\": {\"b\"}})[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {PlotData.INDEX_FIELD: 0, \"b\": 2, \"rev\": \"workspace\"},\n        {PlotData.INDEX_FIELD: 1, \"b\": 3, \"rev\": \"workspace\"},\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"b\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_yaml_test_plot_yaml.assert_plot_content_data": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plot_yaml_test_plot_yaml.assert_plot_content_data", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 543, "end_line": 556, "span_ids": ["test_plot_yaml"], "tokens": 144}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_plot_yaml(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [{\"val\": 2}, {\"val\": 3}]\n    dump_yaml(\"metric_t.yaml\", metric)\n    run_copy_metrics(\n        \"metric_t.yaml\", \"metric.yaml\", plots_no_cache=[\"metric.yaml\"]\n    )\n\n    plot_string = dvc.plots.show()[\"metric.yaml\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\"val\": 2, PlotData.INDEX_FIELD: 0, \"rev\": \"workspace\"},\n        {\"val\": 3, PlotData.INDEX_FIELD: 1, \"rev\": \"workspace\"},\n    ]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_raise_on_wrong_field_test_raise_on_wrong_field.None_1.dvc_plots_show_metric_js": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_raise_on_wrong_field_test_raise_on_wrong_field.None_1.dvc_plots_show_metric_js", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 559, "end_line": 573, "span_ids": ["test_raise_on_wrong_field"], "tokens": 138}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_raise_on_wrong_field(tmp_dir, scm, dvc, run_copy_metrics):\n    metric = [{\"val\": 2}, {\"val\": 3}]\n    _write_json(tmp_dir, metric, \"metric_t.json\")\n    run_copy_metrics(\n        \"metric_t.json\",\n        \"metric.json\",\n        plots_no_cache=[\"metric.json\"],\n        commit=\"first run\",\n    )\n\n    with pytest.raises(NoFieldInDataError):\n        dvc.plots.show(\"metric.json\", props={\"x\": \"no_val\"})\n\n    with pytest.raises(NoFieldInDataError):\n        dvc.plots.show(\"metric.json\", props={\"y\": \"no_val\"})", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_load_metric_from_dict_json_test_load_metric_from_dict_yaml.assert_list_map_dict_plo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_load_metric_from_dict_json_test_load_metric_from_dict_yaml.assert_list_map_dict_plo", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 576, "end_line": 599, "span_ids": ["test_load_metric_from_dict_json", "test_load_metric_from_dict_yaml"], "tokens": 199}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_metric_from_dict_json(tmp_dir):\n    metric = [{\"acccuracy\": 1, \"loss\": 2}, {\"accuracy\": 3, \"loss\": 4}]\n    dmetric = {\"train\": metric}\n\n    plot_data = JSONPlotData(\"-\", \"revision\", json.dumps(dmetric))\n\n    expected = metric\n    for d in expected:\n        d[\"rev\"] = \"revision\"\n\n    assert list(map(dict, plot_data.to_datapoints())) == expected\n\n\ndef test_load_metric_from_dict_yaml(tmp_dir):\n    metric = [{\"acccuracy\": 1, \"loss\": 2}, {\"accuracy\": 3, \"loss\": 4}]\n    dmetric = {\"train\": metric}\n\n    plot_data = YAMLPlotData(\"-\", \"revision\", dumps_yaml(dmetric))\n\n    expected = metric\n    for d in expected:\n        d[\"rev\"] = \"revision\"\n\n    assert list(map(dict, plot_data.to_datapoints())) == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_multiple_plots_test_multiple_plots.assert_len_dvc_plots_show": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_multiple_plots_test_multiple_plots.assert_len_dvc_plots_show", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 602, "end_line": 620, "span_ids": ["test_multiple_plots"], "tokens": 223}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_multiple_plots(tmp_dir, scm, dvc, run_copy_metrics):\n    metric1 = [\n        OrderedDict([(\"first_val\", 100), (\"second_val\", 100), (\"val\", 2)]),\n        OrderedDict([(\"first_val\", 200), (\"second_val\", 300), (\"val\", 3)]),\n    ]\n    metric2 = [\n        OrderedDict([(\"first_val\", 100), (\"second_val\", 100), (\"val\", 2)]),\n        OrderedDict([(\"first_val\", 200), (\"second_val\", 300), (\"val\", 3)]),\n    ]\n    _write_csv(metric1, \"metric_t1.csv\")\n    _write_json(tmp_dir, metric2, \"metric_t2.json\")\n    run_copy_metrics(\n        \"metric_t1.csv\", \"metric1.csv\", plots_no_cache=[\"metric1.csv\"]\n    )\n    run_copy_metrics(\n        \"metric_t2.json\", \"metric2.json\", plots_no_cache=[\"metric2.json\"]\n    )\n\n    assert len(dvc.plots.show().keys()) == 2", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_non_plot_test_show_non_plot.if_not_use_dvc_.assert_not_tmp_dir_d": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_non_plot_test_show_non_plot.if_not_use_dvc_.assert_not_tmp_dir_d", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 623, "end_line": 657, "span_ids": ["test_show_non_plot"], "tokens": 264}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"use_dvc\", [True, False])\ndef test_show_non_plot(tmp_dir, scm, use_dvc):\n    metric = [\n        {\"first_val\": 100, \"val\": 2},\n        {\"first_val\": 200, \"val\": 3},\n    ]\n    _write_json(tmp_dir, metric, \"metric.json\")\n\n    if use_dvc:\n        dvc = Repo.init()\n    else:\n        dvc = Repo(uninitialized=True)\n\n    plot_string = dvc.plots.show(targets=[\"metric.json\"])[\"metric.json\"]\n\n    plot_content = json.loads(plot_string)\n    assert plot_content[\"data\"][\"values\"] == [\n        {\n            \"val\": 2,\n            PlotData.INDEX_FIELD: 0,\n            \"first_val\": 100,\n            \"rev\": \"workspace\",\n        },\n        {\n            \"val\": 3,\n            PlotData.INDEX_FIELD: 1,\n            \"first_val\": 200,\n            \"rev\": \"workspace\",\n        },\n    ]\n    assert plot_content[\"encoding\"][\"x\"][\"field\"] == PlotData.INDEX_FIELD\n    assert plot_content[\"encoding\"][\"y\"][\"field\"] == \"val\"\n\n    if not use_dvc:\n        assert not (tmp_dir / \".dvc\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_non_plot_and_plot_with_params_test_show_non_plot_and_plot_with_params.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_non_plot_and_plot_with_params_test_show_non_plot_and_plot_with_params.None_2", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 660, "end_line": 683, "span_ids": ["test_show_non_plot_and_plot_with_params"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_non_plot_and_plot_with_params(\n    tmp_dir, scm, dvc, run_copy_metrics\n):\n    metric = [\n        {\"first_val\": 100, \"val\": 2},\n        {\"first_val\": 200, \"val\": 3},\n    ]\n    _write_json(tmp_dir, metric, \"metric.json\")\n    run_copy_metrics(\n        \"metric.json\", \"metric2.json\", plots_no_cache=[\"metric2.json\"]\n    )\n\n    dvc.plots.modify(\"metric2.json\", props={\"title\": \"TITLE\"})\n    result = dvc.plots.show(targets=[\"metric.json\", \"metric2.json\"])\n\n    plot_content = json.loads(result[\"metric.json\"])\n    plot2_content = json.loads(result[\"metric2.json\"])\n\n    assert plot2_content[\"title\"] == \"TITLE\"\n\n    assert plot_content != plot2_content\n    plot_content.pop(\"title\")\n    plot2_content.pop(\"title\")\n    assert plot_content == plot2_content", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_no_repo_test_show_from_subdir.assert_subdir_plots_h": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_no_repo_test_show_from_subdir.assert_subdir_plots_h", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 686, "end_line": 712, "span_ids": ["test_show_from_subdir", "test_show_no_repo"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_no_repo(tmp_dir):\n    metric = [\n        {\"first_val\": 100, \"val\": 2},\n        {\"first_val\": 200, \"val\": 3},\n    ]\n    _write_json(tmp_dir, metric, \"metric.json\")\n\n    dvc = Repo(uninitialized=True)\n\n    dvc.plots.show([\"metric.json\"])\n\n\ndef test_show_from_subdir(tmp_dir, dvc, caplog):\n    subdir = tmp_dir / \"subdir\"\n\n    subdir.mkdir()\n    metric = [\n        {\"first_val\": 100, \"val\": 2},\n        {\"first_val\": 200, \"val\": 3},\n    ]\n    _write_json(subdir, metric, \"metric.json\")\n\n    with subdir.chdir(), caplog.at_level(logging.INFO, \"dvc\"):\n        assert main([\"plots\", \"show\", \"metric.json\"]) == 0\n\n    assert f\"file://{str(subdir)}\" in caplog.text\n    assert (subdir / \"plots.html\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plots_show_overlap_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_plots_show_overlap_", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 732, "end_line": 763, "span_ids": ["test_plots_show_overlap"], "tokens": 259}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"clear_before_run\", [True, False])\ndef test_plots_show_overlap(tmp_dir, dvc, run_copy_metrics, clear_before_run):\n    data_dir = PathInfo(\"data\")\n    (tmp_dir / data_dir).mkdir()\n\n    dump_yaml(data_dir / \"m1_temp.yaml\", {\"a\": {\"b\": {\"c\": 2, \"d\": 1}}})\n    run_copy_metrics(\n        str(data_dir / \"m1_temp.yaml\"),\n        str(data_dir / \"m1.yaml\"),\n        single_stage=False,\n        commit=\"add m1\",\n        name=\"cp-m1\",\n        plots=[str(data_dir / \"m1.yaml\")],\n    )\n    with modify_yaml(\"dvc.yaml\") as d:\n        # trying to make an output overlaps error\n        d[\"stages\"][\"corrupted-stage\"] = {\n            \"cmd\": \"mkdir data\",\n            \"outs\": [\"data\"],\n        }\n\n    # running by clearing and not clearing stuffs\n    # so as it works even for optimized cases\n    if clear_before_run:\n        remove(data_dir)\n        remove(dvc.cache.local.cache_dir)\n\n    dvc._reset()\n\n    with pytest.raises(OverlappingOutputPathsError):\n        dvc.plots.show()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/utils.py_csv_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/utils.py_csv_", "embedding": null, "metadata": {"file_path": "tests/func/plots/utils.py", "file_name": "utils.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 24, "span_ids": ["imports", "_write_csv", "_write_json"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import csv\nimport json\n\nfrom funcy import first\n\n\ndef _write_csv(metric, filename, header=True):\n    with open(filename, \"w\", newline=\"\") as csvobj:\n        if header:\n            writer = csv.DictWriter(\n                csvobj, fieldnames=list(first(metric).keys())\n            )\n            writer.writeheader()\n            writer.writerows(metric)\n        else:\n            writer = csv.writer(csvobj)\n            for d in metric:\n                assert len(d) == 1\n                writer.writerow(list(d.values()))\n\n\ndef _write_json(tmp_dir, metric, filename):\n    tmp_dir.gen(filename, json.dumps(metric, sort_keys=True))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_executable_test_add_executable.assert_os_stat_foo_st_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_add.py_test_add_executable_test_add_executable.assert_os_stat_foo_st_", "embedding": null, "metadata": {"file_path": "tests/func/test_add.py", "file_name": "test_add.py", "file_type": "text/x-python", "category": "test", "start_line": 61, "end_line": 78, "span_ids": ["test_add_executable"], "tokens": 157}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(os.name == \"nt\", reason=\"can't set exec bit on Windows\")\ndef test_add_executable(tmp_dir, dvc):\n    tmp_dir.gen(\"foo\", \"foo\")\n    st = os.stat(\"foo\")\n    os.chmod(\"foo\", st.st_mode | stat.S_IEXEC)\n    dvc.add(\"foo\")\n\n    assert load_yaml(\"foo.dvc\") == {\n        \"outs\": [\n            {\n                \"md5\": \"acbd18db4cc2f85cedef654fccc4a4d8\",\n                \"path\": \"foo\",\n                \"size\": 3,\n                \"isexec\": True,\n            }\n        ],\n    }\n    assert os.stat(\"foo\").st_mode & stat.S_IEXEC", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_external_modified_file_test_checkout_external_modified_file.assert_workspace_foo_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_external_modified_file_test_checkout_external_modified_file.assert_workspace_foo_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 849, "end_line": 865, "span_ids": ["test_checkout_external_modified_file"], "tokens": 168}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace\", [pytest.lazy_fixture(\"s3\")], indirect=True\n)\ndef test_checkout_external_modified_file(tmp_dir, dvc, scm, mocker, workspace):\n    # regression: happened when file in external output changed and checkout\n    # was attempted without force, dvc checks if it's present in its cache\n    # before asking user to remove it.\n    workspace.gen(\"foo\", \"foo\")\n    dvc.add(str(workspace / \"foo\"), external=True)\n    scm.add([\"foo.dvc\"])\n    scm.commit(\"add foo\")\n\n    workspace.gen(\"foo\", \"foobar\")  # messing up the external outputs\n    mocker.patch(\"dvc.prompt.confirm\", return_value=True)\n    dvc.checkout()\n\n    assert (workspace / \"foo\").read_text() == \"foo\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_executable_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_checkout.py_test_checkout_executable_", "embedding": null, "metadata": {"file_path": "tests/func/test_checkout.py", "file_name": "test_checkout.py", "file_type": "text/x-python", "category": "test", "start_line": 868, "end_line": 883, "span_ids": ["test_checkout_executable"], "tokens": 115}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_checkout_executable(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n\n    contents = load_yaml(\"foo.dvc\")\n    contents[\"outs\"][0][\"isexec\"] = True\n    dump_yaml(\"foo.dvc\", contents)\n\n    dvc.checkout(\"foo\")\n\n    isexec = os.stat(\"foo\").st_mode & stat.S_IEXEC\n    if os.name == \"nt\":\n        # NOTE: you can't set exec bits on Windows\n        assert not isexec\n    else:\n        assert isexec", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestPull_TestGCMultipleDvcRepos.test.self_assertEqual_args_rep": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestPull_TestGCMultipleDvcRepos.test.self_assertEqual_args_rep", "embedding": null, "metadata": {"file_path": "tests/func/test_cli.py", "file_name": "test_cli.py", "file_type": "text/x-python", "category": "test", "start_line": 72, "end_line": 139, "span_ids": ["TestPush.test", "TestStatus.test", "TestRemove", "TestAdd", "TestRepro.test", "TestGC.test", "TestPull.test", "TestRemove.test", "TestPull", "TestRepro", "TestGC", "TestGCMultipleDvcRepos", "TestGCMultipleDvcRepos.test", "TestAdd.test", "TestPush", "TestStatus"], "tokens": 416}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestPull(TestDvc):\n    def test(self):\n        args = parse_args([\"pull\"])\n        self.assertIsInstance(args.func(args), CmdDataPull)\n\n\nclass TestPush(TestDvc):\n    def test(self):\n        args = parse_args([\"push\"])\n        self.assertIsInstance(args.func(args), CmdDataPush)\n\n\nclass TestStatus(TestDvc):\n    def test(self):\n        args = parse_args([\"status\"])\n        self.assertIsInstance(args.func(args), CmdDataStatus)\n\n\nclass TestRepro(TestDvc):\n    def test(self):\n        target1 = \"1\"\n        target2 = \"2\"\n\n        args = parse_args(\n            [\"repro\", target1, target2, \"-f\", \"--force\", \"-s\", \"--single-item\"]\n        )\n\n        self.assertIsInstance(args.func(args), CmdRepro)\n        self.assertEqual(args.targets, [target1, target2])\n        self.assertEqual(args.force, True)\n        self.assertEqual(args.single_item, True)\n\n\nclass TestRemove(TestDvc):\n    def test(self):\n        target1 = \"1\"\n        target2 = \"2\"\n\n        args = parse_args([\"remove\", target1, target2])\n\n        self.assertIsInstance(args.func(args), CmdRemove)\n        self.assertEqual(args.targets, [target1, target2])\n\n\nclass TestAdd(TestDvc):\n    def test(self):\n        target1 = \"1\"\n        target2 = \"2\"\n\n        args = parse_args([\"add\", target1, target2])\n\n        self.assertIsInstance(args.func(args), CmdAdd)\n        self.assertEqual(args.targets, [target1, target2])\n\n\nclass TestGC(TestDvc):\n    def test(self):\n        args = parse_args([\"gc\"])\n        self.assertIsInstance(args.func(args), CmdGC)\n\n\nclass TestGCMultipleDvcRepos(TestDvc):\n    def test(self):\n        args = parse_args([\"gc\", \"-p\", \"/tmp/asdf\", \"/tmp/xyz\"])\n\n        self.assertIsInstance(args.func(args), CmdGC)\n\n        self.assertEqual(args.repos, [\"/tmp/asdf\", \"/tmp/xyz\"])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestConfig_TestConfig.test_config_list.self_assertIsNone_args_va": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestConfig_TestConfig.test_config_list.self_assertIsNone_args_va", "embedding": null, "metadata": {"file_path": "tests/func/test_cli.py", "file_name": "test_cli.py", "file_type": "text/x-python", "category": "test", "start_line": 142, "end_line": 159, "span_ids": ["TestConfig.test", "TestConfig.test_config_list", "TestConfig"], "tokens": 123}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestConfig(TestDvc):\n    def test(self):\n        name = \"section.option\"\n        value = \"1\"\n\n        args = parse_args([\"config\", \"-u\", \"--unset\", name, value])\n\n        self.assertIsInstance(args.func(args), CmdConfig)\n        self.assertEqual(args.unset, True)\n        self.assertEqual(args.name, (False, \"section\", \"option\"))\n        self.assertEqual(args.value, value)\n\n    def test_config_list(self):\n        args = parse_args([\"config\", \"--list\"])\n\n        self.assertTrue(args.list)\n        self.assertIsNone(args.name)\n        self.assertIsNone(args.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestCheckout_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cli.py_TestCheckout_", "embedding": null, "metadata": {"file_path": "tests/func/test_cli.py", "file_name": "test_cli.py", "file_type": "text/x-python", "category": "test", "start_line": 162, "end_line": 234, "span_ids": ["test_unknown_command_help", "test_unknown_subcommand_help", "TestCheckout.test", "TestCd.test", "TestCd", "TestCheckout", "TestFindRoot", "TestFindRoot.test"], "tokens": 392}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestCheckout(TestDvc):\n    def test(self):\n        args = parse_args([\"checkout\"])\n        self.assertIsInstance(args.func(args), CmdCheckout)\n\n\nclass TestFindRoot(TestDvc):\n    def test(self):\n        class Cmd(CmdBase):\n            def run(self):\n                pass\n\n        class A:\n            quiet = False\n            verbose = True\n            cd = os.path.pardir\n\n        args = A()\n        with self.assertRaises(DvcException):\n            Cmd(args)\n\n\nclass TestCd(TestDvc):\n    def test(self):\n        class Cmd(CmdBase):\n            def run(self):\n                pass\n\n        class A:\n            quiet = False\n            verbose = True\n            cd = os.path.pardir\n\n        parent_dir = os.path.realpath(os.path.pardir)\n        args = A()\n        with self.assertRaises(DvcException):\n            Cmd(args)\n        current_dir = os.path.realpath(os.path.curdir)\n        self.assertEqual(parent_dir, current_dir)\n\n\ndef test_unknown_command_help(capsys):\n    try:\n        _ = parse_args([\"unknown\"])\n    except DvcParserError:\n        pass\n    captured = capsys.readouterr()\n    output = captured.out\n    try:\n        _ = parse_args([\"--help\"])\n    except SystemExit:\n        pass\n    captured = capsys.readouterr()\n    help_output = captured.out\n    assert output == help_output\n\n\ndef test_unknown_subcommand_help(capsys):\n    sample_subcommand = \"push\"\n    try:\n        _ = parse_args([sample_subcommand, \"--unknown\"])\n    except DvcParserError:\n        pass\n    captured = capsys.readouterr()\n    output = captured.out\n    try:\n        _ = parse_args([sample_subcommand, \"--help\"])\n    except SystemExit:\n        pass\n    captured = capsys.readouterr()\n    help_output = captured.out\n    assert output == help_output", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_load_relative_paths_test_load_relative_paths.assert_cfg_remote_tes": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_load_relative_paths_test_load_relative_paths.assert_cfg_remote_tes", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 132, "end_line": 160, "span_ids": ["test_load_relative_paths"], "tokens": 287}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"field, remote_url\",\n    [\n        (\"credentialpath\", \"s3://mybucket/my/path\"),\n        (\"credentialpath\", \"gs://my-bucket/path\"),\n        (\"keyfile\", \"ssh://user@example.com:1234/path/to/dir\"),\n        (\"cert_path\", \"webdavs://example.com/files/USERNAME/\"),\n        (\"key_path\", \"webdavs://example.com/files/USERNAME/\"),\n        (\"gdrive_service_account_p12_file_path\", \"gdrive://root/test\"),\n        (\"gdrive_user_credentials_file\", \"gdrive://root/test\"),\n    ],\n)\ndef test_load_relative_paths(dvc, field, remote_url):\n    # set field to test\n    with dvc.config.edit() as conf:\n        conf[\"remote\"][\"test\"] = {\"url\": remote_url, field: \"file.txt\"}\n\n    # check if written paths are correct\n    dvc_dir = dvc.config.dvc_dir\n    assert dvc.config[\"remote\"][\"test\"][field] == os.path.join(\n        dvc_dir, \"..\", \"file.txt\"\n    )\n\n    # load config and check that it contains what we expect\n    # (relative paths are evaluated correctly)\n    cfg = Config(dvc_dir)\n    assert cfg[\"remote\"][\"test\"][field] == os.path.join(\n        dvc_dir, \"..\", \"file.txt\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_diff_dirty_test_diff_dirty.assert_result_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_diff_dirty_test_diff_dirty.assert_result_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 217, "end_line": 250, "span_ids": ["test_diff_dirty"], "tokens": 301}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_diff_dirty(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\n        {\"file\": \"file_content\", \"dir\": {\"dir_file1\": \"dir file content\"}},\n        commit=\"initial\",\n    )\n\n    (tmp_dir / \"file\").unlink()\n    tmp_dir.gen({\"dir\": {\"dir_file2\": \"dir file 2 content\"}})\n    tmp_dir.dvc_gen(\"new_file\", \"new_file_content\")\n\n    result = dvc.diff()\n\n    assert result == {\n        \"added\": [\n            {\n                \"hash\": digest(\"dir file 2 content\"),\n                \"path\": os.path.join(\"dir\", \"dir_file2\"),\n            },\n            {\"hash\": \"86d049de17c76ac44cdcac146042ec9b\", \"path\": \"new_file\"},\n        ],\n        \"deleted\": [\n            {\"hash\": \"7f0b6bb0b7e951b7fd2b2a4a326297e1\", \"path\": \"file\"}\n        ],\n        \"modified\": [\n            {\n                \"hash\": {\n                    \"new\": \"38175ad60f0e58ac94e0e2b7688afd81.dir\",\n                    \"old\": \"92daf39af116ca2fb245acaeb2ae65f7.dir\",\n                },\n                \"path\": os.path.join(\"dir\", \"\"),\n            }\n        ],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_no_changes_test_targets_single_file.assert_dvc_diff_targets_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_no_changes_test_targets_single_file.assert_dvc_diff_targets_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 253, "end_line": 300, "span_ids": ["test_no_changes", "setup_targets_test", "test_no_commits", "test_targets_single_file", "test_targets_missing_path"], "tokens": 307}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_no_changes(tmp_dir, scm, dvc):\n    tmp_dir.dvc_gen(\"file\", \"first\", commit=\"add a file\")\n    assert dvc.diff() == {}\n\n\ndef test_no_commits(tmp_dir):\n    from dvc.repo import Repo\n    from dvc.scm.git import Git\n    from tests.dir_helpers import git_init\n\n    git_init(\".\")\n    assert Git().no_commits\n\n    assert Repo.init().diff() == {}\n\n\ndef setup_targets_test(tmp_dir):\n    tmp_dir.dvc_gen(\"file\", \"first\", commit=\"add a file\")\n\n    tmp_dir.dvc_gen({\"dir\": {\"1\": \"1\", \"2\": \"2\"}})\n    tmp_dir.dvc_gen(\"file\", \"second\")\n\n    tmp_dir.dvc_gen(os.path.join(\"dir_with\", \"file.txt\"), \"first\")\n\n\ndef test_targets_missing_path(tmp_dir, scm, dvc):\n    from dvc.exceptions import PathMissingError\n\n    setup_targets_test(tmp_dir)\n\n    with pytest.raises(PathMissingError):\n        dvc.diff(targets=[\"missing\"])\n\n\ndef test_targets_single_file(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    assert dvc.diff(targets=[\"file\"]) == {\n        \"added\": [],\n        \"deleted\": [],\n        \"modified\": [\n            {\n                \"path\": \"file\",\n                \"hash\": {\"old\": digest(\"first\"), \"new\": digest(\"second\")},\n            }\n        ],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_single_dir_test_targets_single_dir.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_single_dir_test_targets_single_dir.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 303, "end_line": 320, "span_ids": ["test_targets_single_dir"], "tokens": 163}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_targets_single_dir(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    dir_checksum = \"5fb6b29836c388e093ca0715c872fe2a.dir\"\n\n    expected_result = {\n        \"added\": [\n            {\"path\": os.path.join(\"dir\", \"\"), \"hash\": dir_checksum},\n            {\"path\": os.path.join(\"dir\", \"1\"), \"hash\": digest(\"1\")},\n            {\"path\": os.path.join(\"dir\", \"2\"), \"hash\": digest(\"2\")},\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n\n    assert dvc.diff(targets=[\"dir\"]) == expected_result\n    assert dvc.diff(targets=[\"dir\" + os.path.sep]) == expected_result", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_single_file_in_dir_test_targets_two_files_in_dir.assert_dvc_diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_single_file_in_dir_test_targets_two_files_in_dir.assert_dvc_diff_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 323, "end_line": 347, "span_ids": ["test_targets_two_files_in_dir", "test_targets_single_file_in_dir"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_targets_single_file_in_dir(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    assert dvc.diff(targets=[os.path.join(\"dir\", \"1\")]) == {\n        \"added\": [{\"path\": os.path.join(\"dir\", \"1\"), \"hash\": digest(\"1\")}],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n\n\ndef test_targets_two_files_in_dir(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    assert dvc.diff(\n        targets=[os.path.join(\"dir\", \"1\"), os.path.join(\"dir\", \"2\")]\n    ) == {\n        \"added\": [\n            {\"path\": os.path.join(\"dir\", \"1\"), \"hash\": digest(\"1\")},\n            {\"path\": os.path.join(\"dir\", \"2\"), \"hash\": digest(\"2\")},\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_file_and_dir_test_targets_file_and_dir.assert_dvc_diff_targets_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_file_and_dir_test_targets_file_and_dir.assert_dvc_diff_targets_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 350, "end_line": 369, "span_ids": ["test_targets_file_and_dir"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_targets_file_and_dir(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    dir_checksum = \"5fb6b29836c388e093ca0715c872fe2a.dir\"\n\n    assert dvc.diff(targets=[\"file\", \"dir\"]) == {\n        \"added\": [\n            {\"path\": os.path.join(\"dir\", \"\"), \"hash\": dir_checksum},\n            {\"path\": os.path.join(\"dir\", \"1\"), \"hash\": digest(\"1\")},\n            {\"path\": os.path.join(\"dir\", \"2\"), \"hash\": digest(\"2\")},\n        ],\n        \"deleted\": [],\n        \"modified\": [\n            {\n                \"path\": \"file\",\n                \"hash\": {\"old\": digest(\"first\"), \"new\": digest(\"second\")},\n            }\n        ],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_single_dir_with_file_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_diff.py_test_targets_single_dir_with_file_", "embedding": null, "metadata": {"file_path": "tests/func/test_diff.py", "file_name": "test_diff.py", "file_type": "text/x-python", "category": "test", "start_line": 372, "end_line": 405, "span_ids": ["test_targets_single_dir_with_file", "test_targets_single_file_in_dir_with_file"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_targets_single_dir_with_file(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    expected_result = {\n        \"added\": [\n            {\n                \"path\": os.path.join(\"dir_with\", \"file.txt\"),\n                \"hash\": digest(\"first\"),\n            },\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }\n\n    assert dvc.diff(targets=[\"dir_with\"]) == expected_result\n    assert dvc.diff(targets=[\"dir_with\" + os.path.sep]) == expected_result\n\n\ndef test_targets_single_file_in_dir_with_file(tmp_dir, scm, dvc):\n    setup_targets_test(tmp_dir)\n\n    assert dvc.diff(targets=[os.path.join(\"dir_with\", \"file.txt\")]) == {\n        \"added\": [\n            {\n                \"path\": os.path.join(\"dir_with\", \"file.txt\"),\n                \"hash\": digest(\"first\"),\n            },\n        ],\n        \"deleted\": [],\n        \"modified\": [],\n        \"not in cache\": [],\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_external_output_test_gc_external_output.None_5": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_external_output_test_gc_external_output.None_5", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 352, "end_line": 392, "span_ids": ["test_gc_external_output"], "tokens": 315}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"workspace\",\n    [\n        pytest.lazy_fixture(\"local_cloud\"),\n        pytest.lazy_fixture(\"s3\"),\n        pytest.lazy_fixture(\"gs\"),\n        pytest.lazy_fixture(\"hdfs\"),\n        pytest.lazy_fixture(\"webhdfs\"),\n        pytest.param(\n            pytest.lazy_fixture(\"ssh\"),\n            marks=pytest.mark.skipif(\n                os.name == \"nt\", reason=\"disabled on windows\"\n            ),\n        ),\n    ],\n    indirect=True,\n)\ndef test_gc_external_output(tmp_dir, dvc, workspace):\n    workspace.gen({\"foo\": \"foo\", \"bar\": \"bar\"})\n\n    (foo_stage,) = dvc.add(\"remote://workspace/foo\")\n    (bar_stage,) = dvc.add(\"remote://workspace/bar\")\n\n    foo_hash = foo_stage.outs[0].hash_info.value\n    bar_hash = bar_stage.outs[0].hash_info.value\n\n    assert (\n        workspace / \"cache\" / foo_hash[:2] / foo_hash[2:]\n    ).read_text() == \"foo\"\n    assert (\n        workspace / \"cache\" / bar_hash[:2] / bar_hash[2:]\n    ).read_text() == \"bar\"\n\n    (tmp_dir / \"foo.dvc\").unlink()\n\n    dvc.gc(workspace=True)\n\n    assert not (workspace / \"cache\" / foo_hash[:2] / foo_hash[2:]).exists()\n    assert (\n        workspace / \"cache\" / bar_hash[:2] / bar_hash[2:]\n    ).read_text() == \"bar\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_all_experiments_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_gc.py_test_gc_all_experiments_", "embedding": null, "metadata": {"file_path": "tests/func/test_gc.py", "file_name": "test_gc.py", "file_type": "text/x-python", "category": "test", "start_line": 395, "end_line": 424, "span_ids": ["test_gc_all_experiments"], "tokens": 297}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_gc_all_experiments(tmp_dir, scm, dvc):\n    from dvc.repo.experiments.base import ExpRefInfo\n\n    (foo,) = tmp_dir.dvc_gen(\"foo\", \"foo\", commit=\"foo\")\n    foo_hash = foo.outs[0].hash_info.value\n\n    (bar,) = tmp_dir.dvc_gen(\"foo\", \"bar\", commit=\"bar\")\n    bar_hash = bar.outs[0].hash_info.value\n    baseline = scm.get_rev()\n\n    (baz,) = tmp_dir.dvc_gen(\"foo\", \"baz\", commit=\"baz\")\n    baz_hash = baz.outs[0].hash_info.value\n\n    ref = ExpRefInfo(baseline, \"exp\")\n    scm.set_ref(str(ref), scm.get_rev())\n\n    dvc.gc(all_experiments=True, force=True)\n\n    # all_experiments will include the experiment commit (baz) plus baseline\n    # commit (bar)\n    assert not (\n        tmp_dir / \".dvc\" / \"cache\" / foo_hash[:2] / foo_hash[2:]\n    ).exists()\n    assert (\n        tmp_dir / \".dvc\" / \"cache\" / bar_hash[:2] / bar_hash[2:]\n    ).read_text() == \"bar\"\n    assert (\n        tmp_dir / \".dvc\" / \"cache\" / baz_hash[:2] / baz_hash[2:]\n    ).read_text() == \"baz\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_cache_type_is_properly_overridden_test_cache_type_is_properly_overridden.assert_scm_is_ignored_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_cache_type_is_properly_overridden_test_cache_type_is_properly_overridden.assert_scm_is_ignored_fo", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 218, "end_line": 234, "span_ids": ["test_cache_type_is_properly_overridden"], "tokens": 196}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cache_type_is_properly_overridden(tmp_dir, scm, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        with erepo_dir.dvc.config.edit() as conf:\n            conf[\"cache\"][\"type\"] = \"symlink\"\n        erepo_dir.dvc.cache = Cache(erepo_dir.dvc)\n        erepo_dir.scm_add(\n            [erepo_dir.dvc.config.files[\"repo\"]],\n            \"set source repo cache type to symlink\",\n        )\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", \"create foo\")\n    assert System.is_symlink(erepo_dir / \"foo\")\n\n    dvc.imp(os.fspath(erepo_dir), \"foo\", \"foo_imported\")\n\n    assert not System.is_symlink(\"foo_imported\")\n    assert (tmp_dir / \"foo_imported\").read_text() == \"foo content\"\n    assert scm.is_ignored(\"foo_imported\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_wildcard_imported_directory_stage_test_pull_wildcard_imported_directory_stage.assert_tmp_dir_dir_im": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_pull_wildcard_imported_directory_stage_test_pull_wildcard_imported_directory_stage.assert_tmp_dir_dir_im", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 251, "end_line": 264, "span_ids": ["test_pull_wildcard_imported_directory_stage"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_pull_wildcard_imported_directory_stage(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\n            {\"dir123\": {\"foo\": \"foo content\"}}, commit=\"create dir\"\n        )\n\n    dvc.imp(os.fspath(erepo_dir), \"dir123\", \"dir_imported123\")\n\n    remove(\"dir_imported123\")\n    remove(dvc.cache.local.cache_dir)\n\n    dvc.pull([\"dir_imported*.dvc\"], glob=True)\n\n    assert (tmp_dir / \"dir_imported123\").read_text() == {\"foo\": \"foo content\"}", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_try_import_complete_repo_test_try_import_complete_repo.assert_expected_message_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_try_import_complete_repo_test_try_import_complete_repo.assert_expected_message_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 470, "end_line": 483, "span_ids": ["test_try_import_complete_repo"], "tokens": 178}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_try_import_complete_repo(tmp_dir, dvc, erepo_dir):\n    subrepo = erepo_dir / \"subrepo\"\n    make_subrepo(subrepo, erepo_dir.scm)\n    with subrepo.chdir():\n        subrepo.dvc_gen({\"dir\": {\"bar\": \"bar\"}}, commit=\"files in subrepo\")\n\n    expected_message = \"Cannot fetch a complete DVC repository\"\n    with pytest.raises(IsADVCRepoError) as exc_info:\n        dvc.imp(os.fspath(erepo_dir), \"subrepo\", out=\"out\")\n    assert f\"{expected_message} 'subrepo'\" == str(exc_info.value)\n\n    with pytest.raises(IsADVCRepoError) as exc_info:\n        dvc.imp(os.fspath(erepo_dir), os.curdir, out=\"out\")\n    assert expected_message == str(exc_info.value)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_with_no_exec_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_import_with_no_exec_", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 486, "end_line": 516, "span_ids": ["test_import_with_no_exec", "test_import_with_jobs"], "tokens": 236}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_import_with_no_exec(tmp_dir, dvc, erepo_dir):\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\"foo\", \"foo content\", commit=\"create foo\")\n\n    dvc.imp(os.fspath(erepo_dir), \"foo\", out=\"foo_imported\", no_exec=True)\n\n    dst = tmp_dir / \"foo_imported\"\n    assert not dst.exists()\n\n\ndef test_import_with_jobs(mocker, dvc, erepo_dir):\n    from dvc.data_cloud import DataCloud\n\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\n            {\n                \"dir1\": {\n                    \"file1\": \"file1\",\n                    \"file2\": \"file2\",\n                    \"file3\": \"file3\",\n                    \"file4\": \"file4\",\n                },\n            },\n            commit=\"init\",\n        )\n\n    spy = mocker.spy(DataCloud, \"pull\")\n    dvc.imp(os.fspath(erepo_dir), \"dir1\", jobs=3)\n    run_jobs = tuple(spy.call_args_list[0])[1].get(\"jobs\")\n    assert run_jobs == 3", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_frozen_test_repro_frozen.assert_stages_data_st": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_frozen_test_repro_frozen.assert_stages_data_st", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 173, "end_line": 183, "span_ids": ["test_repro_frozen"], "tokens": 127}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_frozen(tmp_dir, dvc, run_copy):\n    (data_stage,) = tmp_dir.dvc_gen(\"data\", \"foo\")\n    stage0 = run_copy(\"data\", \"stage0\", name=\"copy-data-stage0\")\n    run_copy(\"stage0\", \"stage1\", name=\"copy-data-stage1\")\n    run_copy(\"stage1\", \"stage2\", name=\"copy-data-stage2\")\n\n    dvc.freeze(\"copy-data-stage1\")\n\n    tmp_dir.gen(\"data\", \"bar\")\n    stages = dvc.reproduce()\n    assert stages == [data_stage, stage0]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_multiple_params_test_repro_multiple_params.assert_dvc_reproduce_stag": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_multiple_params_test_repro_multiple_params.assert_dvc_reproduce_stag", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 480, "end_line": 529, "span_ids": ["test_repro_multiple_params"], "tokens": 437}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_multiple_params(tmp_dir, dvc):\n    from dvc.stage.utils import split_params_deps\n    from tests.func.test_run_multistage import supported_params\n\n    dump_yaml(tmp_dir / \"params2.yaml\", supported_params)\n    dump_yaml(tmp_dir / \"params.yaml\", supported_params)\n\n    (tmp_dir / \"foo\").write_text(\"foo\")\n    stage = dvc.run(\n        name=\"read_params\",\n        deps=[\"foo\"],\n        outs=[\"bar\"],\n        params=[\n            \"params2.yaml:lists,floats,name\",\n            \"answer,floats,nested.nested1\",\n        ],\n        cmd=\"cat params2.yaml params.yaml > bar\",\n    )\n\n    params, deps = split_params_deps(stage)\n    assert len(params) == 2\n    assert len(deps) == 1\n    assert len(stage.outs) == 1\n\n    lockfile = stage.dvcfile._lockfile\n    assert lockfile.load()[\"read_params\"][\"params\"] == {\n        \"params2.yaml\": {\n            \"lists\": [42, 42.0, \"42\"],\n            \"floats\": 42.0,\n            \"name\": \"Answer\",\n        },\n        \"params.yaml\": {\n            \"answer\": 42,\n            \"floats\": 42.0,\n            \"nested.nested1\": {\"nested2\": \"42\", \"nested2-2\": 41.99999},\n        },\n    }\n    data, _ = stage.dvcfile._load()\n    params = data[\"stages\"][\"read_params\"][\"params\"]\n\n    custom, defaults = lsplit(lambda v: isinstance(v, dict), params)\n    assert set(custom[0][\"params2.yaml\"]) == {\"name\", \"lists\", \"floats\"}\n    assert set(defaults) == {\"answer\", \"floats\", \"nested.nested1\"}\n\n    assert not dvc.reproduce(stage.addressing)\n    params = deepcopy(supported_params)\n    params[\"answer\"] = 43\n    dump_yaml(tmp_dir / \"params.yaml\", params)\n\n    assert dvc.reproduce(stage.addressing) == [stage]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_list_of_commands_in_order_test_repro_list_of_commands_in_order.assert_tmp_dir_bar_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_list_of_commands_in_order_test_repro_list_of_commands_in_order.assert_tmp_dir_bar_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 532, "end_line": 546, "span_ids": ["test_repro_list_of_commands_in_order"], "tokens": 107}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_list_of_commands_in_order(tmp_dir, dvc):\n    (tmp_dir / \"dvc.yaml\").write_text(\n        dedent(\n            \"\"\"\\\n            stages:\n              multi:\n                cmd:\n                - echo foo>foo\n                - echo bar>bar\n        \"\"\"\n        )\n    )\n    dvc.reproduce(targets=[\"multi\"])\n    assert (tmp_dir / \"foo\").read_text() == \"foo\\n\"\n    assert (tmp_dir / \"bar\").read_text() == \"bar\\n\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_list_of_commands_raise_and_stops_after_failure_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_repro_multistage.py_test_repro_list_of_commands_raise_and_stops_after_failure_", "embedding": null, "metadata": {"file_path": "tests/func/test_repro_multistage.py", "file_name": "test_repro_multistage.py", "file_type": "text/x-python", "category": "test", "start_line": 549, "end_line": 566, "span_ids": ["test_repro_list_of_commands_raise_and_stops_after_failure"], "tokens": 120}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_repro_list_of_commands_raise_and_stops_after_failure(tmp_dir, dvc):\n    (tmp_dir / \"dvc.yaml\").write_text(\n        dedent(\n            \"\"\"\\\n            stages:\n              multi:\n                cmd:\n                - echo foo>foo\n                - failed_command\n                - echo baz>bar\n        \"\"\"\n        )\n    )\n    with pytest.raises(ReproductionError):\n        dvc.reproduce(targets=[\"multi\"])\n    assert (tmp_dir / \"foo\").read_text() == \"foo\\n\"\n    assert not (tmp_dir / \"bar\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_os_from_dvc_utils_serialize_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_os_from_dvc_utils_serialize_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 19, "span_ids": ["imports"], "tokens": 112}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nfrom operator import itemgetter\n\nimport pytest\nfrom funcy import raiser\n\nfrom dvc.dvcfile import PIPELINE_FILE\nfrom dvc.exceptions import NoOutputOrStageError\nfrom dvc.path_info import PathInfo\nfrom dvc.repo import Repo\nfrom dvc.stage.exceptions import (\n    StageFileDoesNotExistError,\n    StageFileFormatError,\n    StageNameUnspecified,\n    StageNotFound,\n)\nfrom dvc.utils import relpath\nfrom dvc.utils.fs import remove\nfrom dvc.utils.serialize import dump_yaml", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_test_collect.None_10": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_test_collect.None_10", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 22, "end_line": 67, "span_ids": ["test_collect"], "tokens": 432}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect(tmp_dir, scm, dvc, run_copy):\n    def collect_outs(*args, **kwargs):\n        return {\n            str(out)\n            for stage in dvc.stage.collect(*args, **kwargs)\n            for out in stage.outs\n        }\n\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    run_copy(\"foo\", \"bar\", single_stage=True)\n    scm.add([\".gitignore\", \"foo.dvc\", \"bar.dvc\"])\n    scm.commit(\"Add foo and bar\")\n\n    scm.checkout(\"new-branch\", create_new=True)\n\n    run_copy(\"bar\", \"buzz\", single_stage=True)\n    scm.add([\".gitignore\", \"buzz.dvc\"])\n    scm.commit(\"Add buzz\")\n\n    assert collect_outs(\"bar.dvc\", with_deps=True) == {\"foo\", \"bar\"}\n    assert collect_outs(\"buzz.dvc\", with_deps=True) == {\"foo\", \"bar\", \"buzz\"}\n    assert collect_outs(\"buzz.dvc\", with_deps=False) == {\"buzz\"}\n\n    run_copy(\"foo\", \"foobar\", name=\"copy-foo-foobar\")\n    assert collect_outs(\":copy-foo-foobar\") == {\"foobar\"}\n    assert collect_outs(\":copy-foo-foobar\", with_deps=True) == {\n        \"foobar\",\n        \"foo\",\n    }\n    assert collect_outs(\"dvc.yaml:copy-foo-foobar\", recursive=True) == {\n        \"foobar\"\n    }\n    assert collect_outs(\"copy-foo-foobar\") == {\"foobar\"}\n    assert collect_outs(\"copy-foo-foobar\", with_deps=True) == {\n        \"foobar\",\n        \"foo\",\n    }\n    assert collect_outs(\"copy-foo-foobar\", recursive=True) == {\"foobar\"}\n\n    run_copy(\"foobar\", \"baz\", name=\"copy-foobar-baz\")\n    assert collect_outs(\"dvc.yaml\") == {\"foobar\", \"baz\"}\n    assert collect_outs(\"dvc.yaml\", with_deps=True) == {\n        \"foobar\",\n        \"baz\",\n        \"foo\",\n    }", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_generated_test_collect_generated.None_7": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_generated_test_collect_generated.None_7", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 150, "end_line": 186, "span_ids": ["test_collect_generated"], "tokens": 286}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_generated(tmp_dir, dvc):\n    d = {\n        \"vars\": [{\"vars\": [1, 2, 3, 4, 5]}],\n        \"stages\": {\n            \"build\": {\"foreach\": \"${vars}\", \"do\": {\"cmd\": \"echo ${item}\"}}\n        },\n    }\n    dump_yaml(\"dvc.yaml\", d)\n\n    all_stages = set(dvc.stages)\n    assert len(all_stages) == 5\n\n    assert set(dvc.stage.collect()) == all_stages\n    assert set(dvc.stage.collect(\"build\", accept_group=True)) == all_stages\n    assert (\n        set(dvc.stage.collect(\"build\", accept_group=True, with_deps=True))\n        == all_stages\n    )\n    assert set(dvc.stage.collect(\"build*\", glob=True)) == all_stages\n    assert (\n        set(dvc.stage.collect(\"build*\", glob=True, with_deps=True))\n        == all_stages\n    )\n\n    stages_info = {(stage, None) for stage in all_stages}\n    assert (\n        set(dvc.stage.collect_granular(\"build\", accept_group=True))\n        == stages_info\n    )\n    assert (\n        set(\n            dvc.stage.collect_granular(\n                \"build\", accept_group=True, with_deps=True\n            )\n        )\n        == stages_info\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_optimization_on_stage_name_test_collect_optimization_on_stage_name.None_1": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_optimization_on_stage_name_test_collect_optimization_on_stage_name.None_1", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 425, "end_line": 437, "span_ids": ["test_collect_optimization_on_stage_name"], "tokens": 145}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_optimization_on_stage_name(tmp_dir, dvc, mocker, run_copy):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage = run_copy(\"foo\", \"bar\", name=\"copy-foo-bar\")\n    # Forget cached stages and graph and error out on collection\n    dvc._reset()\n    mocker.patch(\n        \"dvc.repo.Repo.stages\",\n        property(raiser(Exception(\"Should not collect\"))),\n    )\n\n    # Should read stage directly instead of collecting the whole graph\n    assert dvc.stage.collect(\"copy-foo-bar\") == [stage]\n    assert dvc.stage.collect_granular(\"copy-foo-bar\") == [(stage, None)]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_repo_callback_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_stage_load.py_test_collect_repo_callback_", "embedding": null, "metadata": {"file_path": "tests/func/test_stage_load.py", "file_name": "test_stage_load.py", "file_type": "text/x-python", "category": "test", "start_line": 440, "end_line": 454, "span_ids": ["test_collect_repo_callback"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_collect_repo_callback(tmp_dir, dvc, mocker):\n    mock = mocker.Mock()\n    dvc.stage_collection_error_handler = mock\n\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    dump_yaml(tmp_dir / PIPELINE_FILE, {\"stages\": {\"cmd\": \"echo hello world\"}})\n\n    dvc._reset()\n    assert dvc.stages == [stage]\n    mock.assert_called_once()\n\n    file_path, exc = mock.call_args[0]\n    assert file_path == PIPELINE_FILE\n    assert isinstance(exc, StageFileFormatError)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_hadoop_hadoop.os_environ_CLASSPATH_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/remotes/hdfs.py_hadoop_hadoop.os_environ_CLASSPATH_", "embedding": null, "metadata": {"file_path": "tests/remotes/hdfs.py", "file_name": "hdfs.py", "file_type": "text/x-python", "category": "implementation", "start_line": 77, "end_line": 130, "span_ids": ["hadoop"], "tokens": 476}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.fixture(scope=\"session\")\ndef hadoop(test_config):\n    test_config.requires(\"hdfs\")\n\n    if platform.system() != \"Linux\":\n        pytest.skip(\"only supported on Linux\")\n\n    if PY39:\n        pytest.skip(PYARROW_NOT_AVAILABLE)\n\n    import wget\n    from appdirs import user_cache_dir\n\n    hadoop_name = \"hadoop-2.7.2.tar.gz\"\n    java_name = \"openjdk-7u75-b13-linux-x64-18_dec_2014.tar.gz\"\n\n    base_url = \"https://s3-us-east-2.amazonaws.com/dvc-public/dvc-test/\"\n    hadoop_url = base_url + hadoop_name\n    java_url = base_url + java_name\n\n    (cache_dir,) = (user_cache_dir(\"dvc-test\", \"iterative\"),)\n    dname = os.path.join(cache_dir, \"hdfs\")\n\n    java_tar = os.path.join(dname, java_name)\n    hadoop_tar = os.path.join(dname, hadoop_name)\n\n    java_home = os.path.join(dname, \"java-se-7u75-ri\")\n    hadoop_home = os.path.join(dname, \"hadoop-2.7.2\")\n\n    def _get(url, tar, target):\n        if os.path.isdir(target):\n            return\n\n        if not os.path.exists(tar):\n            wget.download(url, out=tar)\n        assert os.system(f\"tar -xvf {tar} -C {dname}\") == 0\n        assert os.path.isdir(target)\n\n    os.makedirs(dname, exist_ok=True)\n    _get(hadoop_url, hadoop_tar, hadoop_home)\n    _get(java_url, java_tar, java_home)\n\n    os.environ[\"JAVA_HOME\"] = java_home\n    os.environ[\"HADOOP_HOME\"] = hadoop_home\n    os.environ[\"PATH\"] += f\":{hadoop_home}/bin:{hadoop_home}/sbin\"\n\n    # NOTE: must set CLASSPATH to connect using pyarrow.fs.HadoopFileSystem\n    result = subprocess.run(\n        [f\"{hadoop_home}/bin/hdfs\", \"classpath\", \"--glob\"],\n        universal_newlines=True,\n        stdout=subprocess.PIPE,\n        check=False,\n    )\n    os.environ[\"CLASSPATH\"] = result.stdout", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_config.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_config.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["imports", "test_config_formatter", "test_config_bad_name"], "tokens": 225}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.cli import DvcParserError, parse_args\nfrom dvc.command.config import CmdConfig\n\n\ndef test_config_formatter():\n    example_config = {\n        \"section_foo\": {\"option_bar\": True, \"option_baz\": False},\n        \"section_foo2\": {\n            \"option_bar2\": {\"option_baz2\": True},\n            \"option_baz3\": {\"option_baz4\": False},\n        },\n        \"section_foo3\": {},\n    }\n\n    config_lines = tuple(CmdConfig._format_config(example_config))\n    assert config_lines == (\n        \"section_foo.option_bar=True\",\n        \"section_foo.option_baz=False\",\n        \"section_foo2.option_bar2.option_baz2=True\",\n        \"section_foo2.option_baz3.option_baz4=False\",\n    )\n\n\n@pytest.mark.parametrize(\n    \"name\", [\"way.too.long\", \"no_option\", \"remote.way.too.long\"],\n)\ndef test_config_bad_name(name):\n    with pytest.raises(DvcParserError):\n        parse_args([\"config\", name])", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_pytest_test_experiments_apply.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_pytest_test_experiments_apply.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 29, "span_ids": ["test_experiments_apply", "imports"], "tokens": 190}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.cli import parse_args\nfrom dvc.command.experiments import (\n    CmdExperimentsApply,\n    CmdExperimentsBranch,\n    CmdExperimentsDiff,\n    CmdExperimentsGC,\n    CmdExperimentsList,\n    CmdExperimentsPull,\n    CmdExperimentsPush,\n    CmdExperimentsRun,\n    CmdExperimentsShow,\n)\nfrom dvc.exceptions import InvalidArgumentError\n\nfrom .test_repro import default_arguments as repro_arguments\n\n\ndef test_experiments_apply(dvc, scm, mocker):\n    cli_args = parse_args([\"experiments\", \"apply\", \"--force\", \"exp_rev\"])\n    assert cli_args.func == CmdExperimentsApply\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.apply.apply\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(cmd.repo, \"exp_rev\", force=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_diff_test_experiments_diff.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_diff_test_experiments_diff.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 32, "end_line": 56, "span_ids": ["test_experiments_diff"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_experiments_diff(dvc, scm, mocker):\n    cli_args = parse_args(\n        [\n            \"experiments\",\n            \"diff\",\n            \"HEAD~10\",\n            \"HEAD~1\",\n            \"--all\",\n            \"--show-json\",\n            \"--show-md\",\n            \"--old\",\n            \"--precision\",\n            \"10\",\n        ]\n    )\n    assert cli_args.func == CmdExperimentsDiff\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.diff.diff\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo, a_rev=\"HEAD~10\", b_rev=\"HEAD~1\", all=True\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_gc_test_experiments_gc.with_pytest_raises_Invali.cmd_run_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_gc_test_experiments_gc.with_pytest_raises_Invali.cmd_run_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 109, "end_line": 141, "span_ids": ["test_experiments_gc"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_experiments_gc(dvc, scm, mocker):\n    cli_args = parse_args(\n        [\n            \"exp\",\n            \"gc\",\n            \"--workspace\",\n            \"--all-tags\",\n            \"--all-branches\",\n            \"--all-commits\",\n            \"--queued\",\n            \"--force\",\n        ]\n    )\n    assert cli_args.func == CmdExperimentsGC\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.gc.gc\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        workspace=True,\n        all_tags=True,\n        all_branches=True,\n        all_commits=True,\n        queued=True,\n    )\n\n    cli_args = parse_args([\"exp\", \"gc\"])\n    cmd = cli_args.func(cli_args)\n    with pytest.raises(InvalidArgumentError):\n        cmd.run()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_branch_test_experiments_list.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_branch_test_experiments_list.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 144, "end_line": 169, "span_ids": ["test_experiments_list", "test_experiments_branch"], "tokens": 211}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_experiments_branch(dvc, scm, mocker):\n    cli_args = parse_args([\"experiments\", \"branch\", \"expname\", \"branchname\"])\n    assert cli_args.func == CmdExperimentsBranch\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.branch.branch\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(cmd.repo, \"expname\", \"branchname\")\n\n\ndef test_experiments_list(dvc, scm, mocker):\n    cli_args = parse_args(\n        [\"experiments\", \"list\", \"origin\", \"--rev\", \"foo\", \"--all\"]\n    )\n    assert cli_args.func == CmdExperimentsList\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.ls.ls\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo, git_remote=\"origin\", rev=\"foo\", all_=True\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_push_test_experiments_push.m_assert_called_once_with": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_push_test_experiments_push.m_assert_called_once_with", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 172, "end_line": 204, "span_ids": ["test_experiments_push"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_experiments_push(dvc, scm, mocker):\n    cli_args = parse_args(\n        [\n            \"experiments\",\n            \"push\",\n            \"origin\",\n            \"experiment\",\n            \"--force\",\n            \"--no-cache\",\n            \"--remote\",\n            \"my-remote\",\n            \"--jobs\",\n            \"1\",\n            \"--run-cache\",\n        ]\n    )\n    assert cli_args.func == CmdExperimentsPush\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.push.push\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        \"origin\",\n        \"experiment\",\n        force=True,\n        push_cache=False,\n        dvc_remote=\"my-remote\",\n        jobs=1,\n        run_cache=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_pull_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_experiments.py_test_experiments_pull_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_experiments.py", "file_name": "test_experiments.py", "file_type": "text/x-python", "category": "test", "start_line": 207, "end_line": 240, "span_ids": ["test_experiments_pull"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_experiments_pull(dvc, scm, mocker):\n    cli_args = parse_args(\n        [\n            \"experiments\",\n            \"pull\",\n            \"origin\",\n            \"experiment\",\n            \"--force\",\n            \"--no-cache\",\n            \"--remote\",\n            \"my-remote\",\n            \"--jobs\",\n            \"1\",\n            \"--run-cache\",\n        ]\n    )\n    assert cli_args.func == CmdExperimentsPull\n\n    cmd = cli_args.func(cli_args)\n    m = mocker.patch(\"dvc.repo.experiments.pull.pull\", return_value={})\n\n    assert cmd.run() == 0\n\n    m.assert_called_once_with(\n        cmd.repo,\n        \"origin\",\n        \"experiment\",\n        force=True,\n        pull_cache=False,\n        dvc_remote=\"my-remote\",\n        jobs=1,\n        run_cache=True,\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_valid_falsey_values_test_metrics_show_with_valid_falsey_values.assert__show_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_valid_falsey_values_test_metrics_show_with_valid_falsey_values.assert__show_metrics_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 223, "end_line": 231, "span_ids": ["test_metrics_show_with_valid_falsey_values"], "tokens": 106}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_with_valid_falsey_values():\n    assert _show_metrics(\n        {\"branch_1\": {\"metrics.json\": {\"a\": 0, \"b\": {\"ad\": 0.0, \"bc\": 0.0}}}},\n        all_branches=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path          a    b.ad    b.bc\n        branch_1    metrics.json  0    0.0     0.0\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_no_revision_test_metrics_show_with_non_dict_values.assert__show_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_no_revision_test_metrics_show_with_non_dict_values.assert__show_metrics_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 234, "end_line": 252, "span_ids": ["test_metrics_show_with_non_dict_values", "test_metrics_show_with_no_revision"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_with_no_revision():\n    assert _show_metrics(\n        {\"branch_1\": {\"metrics.json\": {\"a\": 0, \"b\": {\"ad\": 0.0, \"bc\": 0.0}}}},\n        all_branches=False,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path          a    b.ad    b.bc\n        metrics.json  0    0.0     0.0\"\"\"\n    )\n\n\ndef test_metrics_show_with_non_dict_values():\n    assert _show_metrics(\n        {\"branch_1\": {\"metrics.json\": 1}}, all_branches=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path\n        branch_1    metrics.json  1\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_multiple_revision_test_metrics_show_with_multiple_revision.assert__show_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_multiple_revision_test_metrics_show_with_multiple_revision.assert__show_metrics_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 255, "end_line": 267, "span_ids": ["test_metrics_show_with_multiple_revision"], "tokens": 147}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_with_multiple_revision():\n    assert _show_metrics(\n        {\n            \"branch_1\": {\"metrics.json\": {\"a\": 1, \"b\": {\"ad\": 1, \"bc\": 2}}},\n            \"branch_2\": {\"metrics.json\": {\"a\": 1, \"b\": {\"ad\": 3, \"bc\": 4}}},\n        },\n        all_branches=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path          a    b.ad    b.bc\n        branch_1    metrics.json  1    1       2\n        branch_2    metrics.json  1    3       4\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_one_revision_multiple_paths_test_metrics_show_with_one_revision_multiple_paths.assert__show_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_one_revision_multiple_paths_test_metrics_show_with_one_revision_multiple_paths.assert__show_metrics_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 270, "end_line": 284, "span_ids": ["test_metrics_show_with_one_revision_multiple_paths"], "tokens": 172}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_with_one_revision_multiple_paths():\n    assert _show_metrics(\n        {\n            \"branch_1\": {\n                \"metrics.json\": {\"a\": 1, \"b\": {\"ad\": 0.1, \"bc\": 1.03}},\n                \"metrics_1.json\": {\"a\": 2.3, \"b\": {\"ad\": 6.5, \"bc\": 7.9}},\n            }\n        },\n        all_branches=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path            a    b.ad    b.bc\n        branch_1    metrics.json    1    0.1     1.03\n        branch_1    metrics_1.json  2.3  6.5     7.9\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_different_metrics_header_test_metrics_show_with_different_metrics_header.assert__show_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_with_different_metrics_header_test_metrics_show_with_different_metrics_header.assert__show_metrics_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 287, "end_line": 299, "span_ids": ["test_metrics_show_with_different_metrics_header"], "tokens": 154}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_with_different_metrics_header():\n    assert _show_metrics(\n        {\n            \"branch_1\": {\"metrics.json\": {\"b\": {\"ad\": 1, \"bc\": 2}, \"c\": 4}},\n            \"branch_2\": {\"metrics.json\": {\"a\": 1, \"b\": {\"ad\": 3, \"bc\": 4}}},\n        },\n        all_branches=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path          a    b.ad    b.bc    c\n        branch_1    metrics.json  \u2014    1       2       4\n        branch_2    metrics.json  1    3       4       \u2014\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_os_test_find_outs_by_path_does_graph_checks.with_pytest_raises_Output.dvc_find_outs_by_path_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_repo.py_os_test_find_outs_by_path_does_graph_checks.with_pytest_raises_Output.dvc_find_outs_by_path_fo", "embedding": null, "metadata": {"file_path": "tests/unit/repo/test_repo.py", "file_name": "test_repo.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 40, "span_ids": ["imports", "test_find_outs_by_path", "test_is_dvc_internal", "test_find_outs_by_path_does_graph_checks"], "tokens": 304}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport shutil\n\nimport pytest\n\nfrom dvc.exceptions import OutputDuplicationError\nfrom dvc.repo import NotDvcRepoError, Repo, locked\nfrom dvc.utils.fs import remove\n\n\ndef test_is_dvc_internal(dvc):\n    assert dvc.is_dvc_internal(os.path.join(\"path\", \"to\", \".dvc\", \"file\"))\n    assert not dvc.is_dvc_internal(os.path.join(\"path\", \"to-non-.dvc\", \"file\"))\n\n\n@pytest.mark.parametrize(\n    \"path\",\n    [\n        os.path.join(\"dir\", \"subdir\", \"file\"),\n        os.path.join(\"dir\", \"subdir\"),\n        \"dir\",\n    ],\n)\ndef test_find_outs_by_path(tmp_dir, dvc, path):\n    (stage,) = tmp_dir.dvc_gen(\n        {\"dir\": {\"subdir\": {\"file\": \"file\"}, \"other\": \"other\"}}\n    )\n\n    outs = dvc.find_outs_by_path(path, strict=False)\n    assert len(outs) == 1\n    assert outs[0].path_info == stage.outs[0].path_info\n\n\ndef test_find_outs_by_path_does_graph_checks(tmp_dir, dvc):\n    tmp_dir.dvc_gen(\"foo\", \"foo\")\n    shutil.copyfile(\"foo.dvc\", \"foo-2.dvc\")\n\n    dvc._reset()\n    with pytest.raises(OutputDuplicationError):\n        dvc.find_outs_by_path(\"foo\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_reproduce.py_mock_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/repo/test_reproduce.py_mock_", "embedding": null, "metadata": {"file_path": "tests/unit/repo/test_reproduce.py", "file_name": "test_reproduce.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 26, "span_ids": ["imports", "test_number_reproduces"], "tokens": 194}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import mock\n\n\n@mock.patch(\"dvc.repo.reproduce._reproduce_stage\", returns=[])\ndef test_number_reproduces(reproduce_stage_mock, tmp_dir, dvc):\n    tmp_dir.dvc_gen({\"pre-foo\": \"pre-foo\"})\n\n    dvc.run(\n        single_stage=True, deps=[\"pre-foo\"], outs=[\"foo\"], cmd=\"echo foo > foo\"\n    )\n    dvc.run(\n        single_stage=True, deps=[\"foo\"], outs=[\"bar\"], cmd=\"echo bar > bar\"\n    )\n    dvc.run(\n        single_stage=True, deps=[\"foo\"], outs=[\"baz\"], cmd=\"echo baz > baz\"\n    )\n    dvc.run(\n        single_stage=True, deps=[\"bar\"], outs=[\"boop\"], cmd=\"echo boop > boop\"\n    )\n\n    reproduce_stage_mock.reset_mock()\n\n    dvc.reproduce(all_pipelines=True)\n\n    assert reproduce_stage_mock.call_count == 5", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_os_git.git__close_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_os_git.git__close_", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 17, "span_ids": ["imports", "git"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.scm.base import SCMError\nfrom tests.basic_env import TestDvcGit\n\n\n# Behaves the same as SCM but will test against all suported Git backends.\n# tmp_dir.scm will still contain a default SCM instance.\n@pytest.fixture(params=[\"gitpython\", \"dulwich\"])\ndef git(tmp_dir, scm, request):\n    from dvc.scm.git import Git\n\n    git_ = Git(os.fspath(tmp_dir), backends=[request.param])\n    yield git_\n    git_.close()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_TestGit_TestGit.test_belongs_to_scm_false.self_assertFalse_self_dvc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_TestGit_TestGit.test_belongs_to_scm_false.self_assertFalse_self_dvc", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 20, "end_line": 31, "span_ids": ["TestGit.test_belongs_to_scm_false", "TestGit.test_belongs_to_scm_true_on_gitignore", "TestGit.test_belongs_to_scm_true_on_git_internal", "TestGit"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class TestGit(TestDvcGit):\n    def test_belongs_to_scm_true_on_gitignore(self):\n        path = os.path.join(\"path\", \"to\", \".gitignore\")\n        self.assertTrue(self.dvc.scm.belongs_to_scm(path))\n\n    def test_belongs_to_scm_true_on_git_internal(self):\n        path = os.path.join(\"path\", \"to\", \".git\", \"internal\", \"file\")\n        self.assertTrue(self.dvc.scm.belongs_to_scm(path))\n\n    def test_belongs_to_scm_false(self):\n        path = os.path.join(\"some\", \"non-.git\", \"file\")\n        self.assertFalse(self.dvc.scm.belongs_to_scm(path))", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_get_ref_test_get_ref.assert_git_get_ref_refs_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_get_ref_test_get_ref.assert_git_get_ref_refs_", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 169, "end_line": 184, "span_ids": ["test_get_ref"], "tokens": 155}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_get_ref(tmp_dir, git):\n    tmp_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = tmp_dir.scm.get_rev()\n    tmp_dir.gen(\n        {\n            os.path.join(\".git\", \"refs\", \"foo\", \"bar\"): init_rev,\n            os.path.join(\n                \".git\", \"refs\", \"foo\", \"baz\"\n            ): \"ref: refs/heads/master\",\n        }\n    )\n\n    assert init_rev == git.get_ref(\"refs/foo/bar\")\n    assert init_rev == git.get_ref(\"refs/foo/baz\")\n    assert \"refs/heads/master\" == git.get_ref(\"refs/foo/baz\", follow=False)\n    assert git.get_ref(\"refs/foo/qux\") is None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_fetch_refspecs_test_fetch_refspecs.assert_0_remote_dir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_fetch_refspecs_test_fetch_refspecs.assert_0_remote_dir", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 246, "end_line": 267, "span_ids": ["test_fetch_refspecs"], "tokens": 219}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fetch_refspecs(tmp_dir, scm, make_tmp_dir):\n    remote_dir = make_tmp_dir(\"git-remote\", scm=True)\n    url = \"file://{}\".format(remote_dir.resolve().as_posix())\n\n    remote_dir.scm_gen({\"file\": \"0\"}, commit=\"init\")\n    init_rev = remote_dir.scm.get_rev()\n    remote_dir.gen(\n        {\n            os.path.join(\".git\", \"refs\", \"foo\", \"bar\"): init_rev,\n            os.path.join(\".git\", \"refs\", \"foo\", \"baz\"): init_rev,\n        }\n    )\n\n    scm.fetch_refspecs(\n        url, [\"refs/foo/bar:refs/foo/bar\", \"refs/foo/baz:refs/foo/baz\"]\n    )\n    assert init_rev == scm.get_ref(\"refs/foo/bar\")\n    assert init_rev == scm.get_ref(\"refs/foo/baz\")\n\n    remote_dir.scm.checkout(\"refs/foo/bar\")\n    assert init_rev == remote_dir.scm.get_rev()\n    assert \"0\" == (remote_dir / \"file\").read_text()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_outs_isexec_test_fill_from_lock_outs_isexec.assert_stage_outs_0_isex": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_fill_from_lock_outs_isexec_test_fill_from_lock_outs_isexec.assert_stage_outs_0_isex", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 42, "end_line": 57, "span_ids": ["test_fill_from_lock_outs_isexec"], "tokens": 136}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_fill_from_lock_outs_isexec(dvc):\n    stage = create_stage(PipelineStage, dvc, PIPELINE_FILE, outs=[\"foo\"])\n\n    assert not stage.outs[0].isexec\n\n    StageLoader.fill_from_lock(\n        stage,\n        {\n            \"cmd\": \"command\",\n            \"outs\": [{\"path\": \"foo\", \"md5\": \"foo_checksum\", \"isexec\": True}],\n        },\n    )\n\n    assert stage.outs[0].def_path == \"foo\"\n    assert stage.outs[0].hash_info == HashInfo(\"md5\", \"foo_checksum\")\n    assert stage.outs[0].isexec", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_cmd_with_list_test_load_stage_no_lock.assert_not_stage_outs_0_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_loader_pipeline_file.py_test_load_stage_cmd_with_list_test_load_stage_no_lock.assert_not_stage_outs_0_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_loader_pipeline_file.py", "file_name": "test_loader_pipeline_file.py", "file_type": "text/x-python", "category": "test", "start_line": 181, "end_line": 200, "span_ids": ["test_load_stage_cmd_with_list", "test_load_stage_no_lock", "test_load_stage_outs_with_flags"], "tokens": 265}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_load_stage_cmd_with_list(dvc, stage_data, lock_data):\n    stage_data[\"cmd\"] = [\"cmd-0\", \"cmd-1\"]\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n    assert stage.cmd == [\"cmd-0\", \"cmd-1\"]\n\n\ndef test_load_stage_outs_with_flags(dvc, stage_data, lock_data):\n    stage_data[\"outs\"] = [{\"foo\": {\"cache\": False}}]\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data, lock_data)\n    assert stage.outs[0].use_cache is False\n\n\ndef test_load_stage_no_lock(dvc, stage_data):\n    dvcfile = Dvcfile(dvc, PIPELINE_FILE)\n    stage = StageLoader.load_stage(dvcfile, \"stage-1\", stage_data)\n    assert stage.deps[0].def_path == \"foo\" and stage.outs[0].def_path == \"bar\"\n    assert not stage.deps[0].hash_info\n    assert not stage.outs[0].hash_info", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_run.py_logging_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_run.py_logging_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_run.py", "file_name": "test_run.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 25, "span_ids": ["imports", "test_run_stage_dry"], "tokens": 164}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nimport pytest\n\nfrom dvc.stage import Stage\nfrom dvc.stage.run import run_stage\n\n\n@pytest.mark.parametrize(\n    \"cmd, expected\",\n    [\n        (\"mycmd arg1 arg2\", [\"> mycmd arg1 arg2\"]),\n        ([\"mycmd1 arg1\", \"mycmd2 arg2\"], [\"> mycmd1 arg1\", \"> mycmd2 arg2\"]),\n    ],\n)\ndef test_run_stage_dry(caplog, cmd, expected):\n    with caplog.at_level(level=logging.INFO, logger=\"dvc\"):\n        stage = Stage(None, \"stage.dvc\", cmd=cmd)\n        run_stage(stage, dry=True)\n\n    expected.insert(\n        0, \"Running callback stage 'stage.dvc':\",\n    )\n    assert caplog.messages == expected", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_outs_isexec_test_lock_outs_isexec.assert_to_single_stage_lo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_serialize_pipeline_lock.py_test_lock_outs_isexec_test_lock_outs_isexec.assert_to_single_stage_lo", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_serialize_pipeline_lock.py", "file_name": "test_serialize_pipeline_lock.py", "file_type": "text/x-python", "category": "test", "start_line": 135, "end_line": 156, "span_ids": ["test_lock_outs_isexec"], "tokens": 151}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\"typ\", [\"plots\", \"metrics\", \"outs\"])\ndef test_lock_outs_isexec(dvc, typ):\n    stage = create_stage(PipelineStage, dvc, **{typ: [\"input\"]}, **kwargs)\n    stage.outs[0].hash_info = HashInfo(\"md5\", \"md-five\")\n    stage.outs[0].isexec = True\n    assert to_single_stage_lockfile(stage) == OrderedDict(\n        [\n            (\"cmd\", \"command\"),\n            (\n                \"outs\",\n                [\n                    OrderedDict(\n                        [\n                            (\"path\", \"input\"),\n                            (\"md5\", \"md-five\"),\n                            (\"isexec\", True),\n                        ]\n                    )\n                ],\n            ),\n        ]\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_collect.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_collect.py__", "embedding": null, "metadata": {"file_path": "tests/unit/test_collect.py", "file_name": "test_collect.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 11, "span_ids": ["imports", "test_no_file_on_target_rev"], "tokens": 77}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\n\nfrom dvc.repo.collect import collect\n\n\ndef test_no_file_on_target_rev(tmp_dir, scm, dvc, caplog):\n    with caplog.at_level(logging.WARNING, \"dvc\"):\n        collect(dvc, targets=[\"file.yaml\"], rev=\"current_branch\")\n\n    assert \"'file.yaml' was not found at: 'current_branch'.\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_clone_test_clone.with_pytest_raises_KeyNot.c2_select_lst_1_not_exis": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_clone_test_clone.with_pytest_raises_KeyNot.c2_select_lst_1_not_exis", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 263, "end_line": 283, "span_ids": ["test_clone"], "tokens": 160}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_clone():\n    d = {\n        \"dct\": {\n            \"foo0\": \"foo0\",\n            \"bar0\": \"bar0\",\n            \"foo1\": \"foo1\",\n            \"bar1\": \"bar1\",\n        },\n        \"lst\": [1, 2, 3],\n    }\n    c1 = Context(d)\n    c2 = Context.clone(c1)\n\n    c2[\"dct\"][\"foo0\"] = \"foo\"\n    del c2[\"dct\"][\"foo1\"]\n\n    assert c1 != c2\n    assert c1 == Context(d)\n    assert c2.select(\"lst.0\") == Value(1)\n    with pytest.raises(KeyNotInContext):\n        c2.select(\"lst.1.not_existing_key\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_track_test_track.with_context_track_as_t.None_4": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_track_test_track.with_context_track_as_t.None_4", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 286, "end_line": 322, "span_ids": ["test_track"], "tokens": 302}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_track(tmp_dir):\n    d = {\n        \"lst\": [\n            {\"foo0\": \"foo0\", \"bar0\": \"bar0\"},\n            {\"foo1\": \"foo1\", \"bar1\": \"bar1\"},\n        ],\n        \"dct\": {\"foo\": \"foo\", \"bar\": \"bar\", \"baz\": \"baz\"},\n    }\n    tree = LocalTree(None, config={})\n    path = tmp_dir / \"params.yaml\"\n    dump_yaml(path, d, tree)\n\n    context = Context.load_from(tree, path)\n\n    def key_tracked(d, key):\n        assert len(d) == 1\n        return key in d[relpath(path)]\n\n    with context.track() as tracked:\n        context.select(\"lst\")\n        assert key_tracked(tracked, \"lst\")\n\n        context.select(\"dct\")\n        assert not key_tracked(tracked, \"dct\")\n\n        context.select(\"dct.foo\")\n        assert key_tracked(tracked, \"dct.foo\")\n\n        # Currently, it's unable to track dictionaries, as it can be merged\n        # from multiple sources.\n        context.select(\"lst.0\")\n        assert not key_tracked(tracked, \"lst.0\")\n\n        # FIXME: either support tracking list values in ParamsDependency\n        # or, prevent this from being tracked.\n        context.select(\"lst.0.foo0\")\n        assert key_tracked(tracked, \"lst.0.foo0\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_track_from_multiple_files_test_track_from_multiple_files.None_1.assert_not_key_tracked_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/test_context.py_test_track_from_multiple_files_test_track_from_multiple_files.None_1.assert_not_key_tracked_", "embedding": null, "metadata": {"file_path": "tests/unit/test_context.py", "file_name": "test_context.py", "file_type": "text/x-python", "category": "test", "start_line": 325, "end_line": 383, "span_ids": ["test_track_from_multiple_files"], "tokens": 492}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_track_from_multiple_files(tmp_dir):\n    d1 = {\"Train\": {\"us\": {\"lr\": 10}}}\n    d2 = {\"Train\": {\"us\": {\"layers\": 100}}}\n\n    tree = LocalTree(None, config={})\n    path1 = tmp_dir / \"params.yaml\"\n    path2 = tmp_dir / \"params2.yaml\"\n    dump_yaml(path1, d1, tree)\n    dump_yaml(path2, d2, tree)\n\n    context = Context.load_from(tree, path1)\n    c = Context.load_from(tree, path2)\n    context.merge_update(c)\n\n    def key_tracked(d, path, key):\n        return key in d[relpath(path)]\n\n    with context.track() as tracked:\n        context.select(\"Train\")\n        assert not (\n            key_tracked(tracked, path1, \"Train\")\n            or key_tracked(tracked, path2, \"Train\")\n        )\n\n        context.select(\"Train.us\")\n        assert not (\n            key_tracked(tracked, path1, \"Train.us\")\n            or key_tracked(tracked, path2, \"Train.us\")\n        )\n\n        context.select(\"Train.us.lr\")\n        assert key_tracked(tracked, path1, \"Train.us.lr\") and not key_tracked(\n            tracked, path2, \"Train.us.lr\"\n        )\n        context.select(\"Train.us.layers\")\n        assert not key_tracked(\n            tracked, path1, \"Train.us.layers\"\n        ) and key_tracked(tracked, path2, \"Train.us.layers\")\n\n    context = Context.clone(context)\n    assert not context._tracked_data\n\n    # let's see with an alias\n    context[\"us\"] = context[\"Train\"][\"us\"]\n    with context.track() as tracked:\n        context.select(\"us\")\n        assert not (\n            key_tracked(tracked, path1, \"Train.us\")\n            or key_tracked(tracked, path2, \"Train.us\")\n        )\n\n        context.select(\"us.lr\")\n        assert key_tracked(tracked, path1, \"Train.us.lr\") and not key_tracked(\n            tracked, path2, \"Train.us.lr\"\n        )\n        context.select(\"Train.us.layers\")\n        assert not key_tracked(\n            tracked, path1, \"Train.us.layers\"\n        ) and key_tracked(tracked, path2, \"Train.us.layers\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_base.py_pytest_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/tree/test_base.py_pytest_", "embedding": null, "metadata": {"file_path": "tests/unit/tree/test_base.py", "file_name": "test_base.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 20, "span_ids": ["imports", "test_missing_deps"], "tokens": 126}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import pytest\n\nfrom dvc.tree.base import BaseTree, RemoteMissingDepsError\n\n\n@pytest.mark.parametrize(\n    \"pkg, msg\",\n    [\n        (None, \"Please report this bug to\"),\n        (\"pip\", \"pip install\"),\n        (\"conda\", \"conda install\"),\n    ],\n)\ndef test_missing_deps(pkg, msg, mocker):\n    requires = {\"missing\": \"missing\"}\n    mocker.patch.object(BaseTree, \"REQUIRES\", requires)\n    mocker.patch(\"dvc.utils.pkg.PKG\", pkg)\n    with pytest.raises(RemoteMissingDepsError, match=msg):\n        BaseTree(None, {})", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/cache.py_argparse_CmdCacheDir.run.return.0": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/cache.py_argparse_CmdCacheDir.run.return.0", "embedding": null, "metadata": {"file_path": "dvc/command/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 29, "span_ids": ["imports", "CmdCacheDir.run", "CmdCacheDir"], "tokens": 205}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import argparse\nimport logging\n\nfrom dvc.command import completion\nfrom dvc.command.base import append_doc_link, fix_subparsers\nfrom dvc.command.config import CmdConfig\n\nlogger = logging.getLogger(__name__)\n\n\nclass CmdCacheDir(CmdConfig):\n    def run(self):\n        if self.args.value is None and not self.args.unset:\n            if self.args.level:\n                conf = self.config.read(level=self.args.level)\n            else:\n                # Use merged config with default values\n                conf = self.config\n            self._check(conf, False, \"cache\", \"dir\")\n            logger.info(conf[\"cache\"][\"dir\"])\n            return 0\n        with self.config.edit(level=self.args.level) as conf:\n            if self.args.unset:\n                self._check(conf, False, \"cache\", \"dir\")\n                del conf[\"cache\"][\"dir\"]\n            else:\n                self._check(conf, False, \"cache\")\n                conf[\"cache\"][\"dir\"] = self.args.value\n        return 0", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/cache.py_add_parser_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/cache.py_add_parser_", "embedding": null, "metadata": {"file_path": "dvc/command/cache.py", "file_name": "cache.py", "file_type": "text/x-python", "category": "implementation", "start_line": 32, "end_line": 80, "span_ids": ["add_parser"], "tokens": 337}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    from dvc.command.config import parent_config_parser\n\n    CACHE_HELP = \"Manage cache settings.\"\n\n    cache_parser = subparsers.add_parser(\n        \"cache\",\n        parents=[parent_parser],\n        description=append_doc_link(CACHE_HELP, \"cache\"),\n        help=CACHE_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n\n    cache_subparsers = cache_parser.add_subparsers(\n        dest=\"cmd\",\n        help=\"Use `dvc cache CMD --help` for command-specific \" \"help.\",\n    )\n\n    fix_subparsers(cache_subparsers)\n\n    parent_cache_config_parser = argparse.ArgumentParser(\n        add_help=False, parents=[parent_config_parser]\n    )\n    CACHE_DIR_HELP = \"Configure cache directory location.\"\n\n    cache_dir_parser = cache_subparsers.add_parser(\n        \"dir\",\n        parents=[parent_parser, parent_cache_config_parser],\n        description=append_doc_link(CACHE_HELP, \"cache/dir\"),\n        help=CACHE_DIR_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    cache_dir_parser.add_argument(\n        \"-u\",\n        \"--unset\",\n        default=False,\n        action=\"store_true\",\n        help=\"Unset option.\",\n    )\n    cache_dir_parser.add_argument(\n        \"value\",\n        help=\"Path to cache directory. Relative paths are resolved relative \"\n        \"to the current directory and saved to config relative to the \"\n        \"config file location. If no path is provided, it returns the \"\n        \"current cache directory.\",\n        nargs=\"?\",\n    ).complete = completion.DIR\n    cache_dir_parser.set_defaults(func=CmdCacheDir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_CmdConfig._check_CmdConfig._config_file_prefix.return.fname_t_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/config.py_CmdConfig._check_CmdConfig._config_file_prefix.return.fname_t_", "embedding": null, "metadata": {"file_path": "dvc/command/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 104, "end_line": 130, "span_ids": ["CmdConfig._format_config", "CmdConfig._config_file_prefix", "CmdConfig._check"], "tokens": 202}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class CmdConfig(CmdBaseNoRepo):\n\n    def _check(self, conf, remote, section, opt=None):\n        name = \"remote\" if remote else \"section\"\n        if section not in conf:\n            raise ConfigError(f\"{name} '{section}' doesn't exist\")\n\n        if opt and opt not in conf[section]:\n            raise ConfigError(\n                f\"option '{opt}' doesn't exist in {name} '{section}'\"\n            )\n\n    @staticmethod\n    def _format_config(config, prefix=\"\"):\n        for key, value in flatten(config).items():\n            yield f\"{prefix}{key}={value}\"\n\n    @staticmethod\n    def _config_file_prefix(show_origin, config, level):\n        if not show_origin:\n            return \"\"\n\n        level = level or \"repo\"\n        fname = config.files[level]\n\n        if level in [\"local\", \"repo\"]:\n            fname = os.path.relpath(fname, start=Repo.find_root())\n\n        return fname + \"\\t\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_add_parser_add_parser.None_17": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_add_parser_add_parser.None_17", "embedding": null, "metadata": {"file_path": "dvc/command/data_sync.py", "file_name": "data_sync.py", "file_type": "text/x-python", "category": "implementation", "start_line": 120, "end_line": 249, "span_ids": ["add_parser"], "tokens": 775}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, _parent_parser):\n    from dvc.command.status import CmdDataStatus\n\n    # Pull\n    PULL_HELP = \"Download tracked files or directories from remote storage.\"\n\n    pull_parser = subparsers.add_parser(\n        \"pull\",\n        parents=[shared_parent_parser()],\n        description=append_doc_link(PULL_HELP, \"pull\"),\n        help=PULL_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    pull_parser.add_argument(\n        \"-r\", \"--remote\", help=\"Remote storage to pull from\", metavar=\"<name>\",\n    )\n    pull_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all branches.\",\n    )\n    pull_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all tags.\",\n    )\n    pull_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all commits.\",\n    )\n    pull_parser.add_argument(\n        \"-f\",\n        \"--force\",\n        action=\"store_true\",\n        default=False,\n        help=\"Do not prompt when removing working directory files.\",\n    )\n    pull_parser.add_argument(\n        \"-d\",\n        \"--with-deps\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all dependencies of the specified target.\",\n    )\n    pull_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Pull cache for subdirectories of the specified directory.\",\n    )\n    pull_parser.add_argument(\n        \"--run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch run history for all stages.\",\n    )\n    pull_parser.add_argument(\n        \"--glob\",\n        action=\"store_true\",\n        default=False,\n        help=\"Pull cache for targets matching shell-style wildcards.\",\n    )\n    pull_parser.set_defaults(func=CmdDataPull)\n\n    # Push\n    PUSH_HELP = \"Upload tracked files or directories to remote storage.\"\n\n    push_parser = subparsers.add_parser(\n        \"push\",\n        parents=[shared_parent_parser()],\n        description=append_doc_link(PUSH_HELP, \"push\"),\n        help=PUSH_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    push_parser.add_argument(\n        \"-r\", \"--remote\", help=\"Remote storage to push to\", metavar=\"<name>\",\n    )\n    push_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push cache for all branches.\",\n    )\n    push_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push cache for all tags.\",\n    )\n    push_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push cache for all commits.\",\n    )\n    push_parser.add_argument(\n        \"-d\",\n        \"--with-deps\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push cache for all dependencies of the specified target.\",\n    )\n    push_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push cache for subdirectories of specified directory.\",\n    )\n    push_parser.add_argument(\n        \"--run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=\"Push run history for all stages.\",\n    )\n    push_parser.add_argument(\n        \"--glob\",\n        action=\"store_true\",\n        default=False,\n        help=\"Allows targets containing shell-style wildcards.\",\n    )\n    # ... other code", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_add_parser.push_parser_set_defaults__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/data_sync.py_add_parser.push_parser_set_defaults__", "embedding": null, "metadata": {"file_path": "dvc/command/data_sync.py", "file_name": "data_sync.py", "file_type": "text/x-python", "category": "implementation", "start_line": 250, "end_line": 393, "span_ids": ["add_parser"], "tokens": 840}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, _parent_parser):\n    # ... other code\n    push_parser.set_defaults(func=CmdDataPush)\n\n    # Fetch\n    FETCH_HELP = (\n        \"Download files or directories from remote storage to the cache.\"\n    )\n\n    fetch_parser = subparsers.add_parser(\n        \"fetch\",\n        parents=[shared_parent_parser()],\n        description=append_doc_link(FETCH_HELP, \"fetch\"),\n        help=FETCH_HELP,\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    fetch_parser.add_argument(\n        \"-r\",\n        \"--remote\",\n        help=\"Remote storage to fetch from\",\n        metavar=\"<name>\",\n    )\n    fetch_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all branches.\",\n    )\n    fetch_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all tags.\",\n    )\n    fetch_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all commits.\",\n    )\n    fetch_parser.add_argument(\n        \"-d\",\n        \"--with-deps\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for all dependencies of the \" \"specified target.\",\n    )\n    fetch_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch cache for subdirectories of specified directory.\",\n    )\n    fetch_parser.add_argument(\n        \"--run-cache\",\n        action=\"store_true\",\n        default=False,\n        help=\"Fetch run history for all stages.\",\n    )\n    fetch_parser.set_defaults(func=CmdDataFetch)\n\n    # Status\n    STATUS_HELP = (\n        \"Show changed stages, compare local cache and a remote storage.\"\n    )\n\n    status_parser = subparsers.add_parser(\n        \"status\",\n        parents=[shared_parent_parser()],\n        description=append_doc_link(STATUS_HELP, \"status\"),\n        help=STATUS_HELP,\n        conflict_handler=\"resolve\",\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n    )\n    status_parser.add_argument(\n        \"-q\",\n        \"--quiet\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"Suppresses all output.\"\n            \" Exit with 0 if pipelines are up to date, otherwise 1.\"\n        ),\n    )\n    status_parser.add_argument(\n        \"-c\",\n        \"--cloud\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status of a local cache compared to a remote repository.\",\n    )\n    status_parser.add_argument(\n        \"-r\",\n        \"--remote\",\n        help=\"Remote storage to compare local cache to\",\n        metavar=\"<name>\",\n    )\n    status_parser.add_argument(\n        \"-a\",\n        \"--all-branches\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status of a local cache compared to a remote repository \"\n        \"for all branches.\",\n    )\n    status_parser.add_argument(\n        \"-T\",\n        \"--all-tags\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status of a local cache compared to a remote repository \"\n        \"for all tags.\",\n    )\n    status_parser.add_argument(\n        \"--all-commits\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status of a local cache compared to a remote repository \"\n        \"for all commits.\",\n    )\n    status_parser.add_argument(\n        \"-d\",\n        \"--with-deps\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status for all dependencies of the specified target.\",\n    )\n    status_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status of all stages in the specified directory.\",\n    )\n    status_parser.add_argument(\n        \"--show-json\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show status in JSON format.\",\n    )\n\n    status_parser.set_defaults(func=CmdDataStatus)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_add_parser.None_11_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/command/metrics.py_add_parser.None_11_", "embedding": null, "metadata": {"file_path": "dvc/command/metrics.py", "file_name": "metrics.py", "file_type": "text/x-python", "category": "implementation", "start_line": 288, "end_line": 332, "span_ids": ["add_parser"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def add_parser(subparsers, parent_parser):\n    # ... other code\n    metrics_diff_parser.add_argument(\n        \"-R\",\n        \"--recursive\",\n        action=\"store_true\",\n        default=False,\n        help=(\n            \"If any target is a directory, recursively search and process \"\n            \"metrics files.\"\n        ),\n    )\n    metrics_diff_parser.add_argument(\n        \"--all\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show unchanged metrics as well.\",\n    )\n    metrics_diff_parser.add_argument(\n        \"--show-json\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show output in JSON format.\",\n    )\n    metrics_diff_parser.add_argument(\n        \"--show-md\",\n        action=\"store_true\",\n        default=False,\n        help=\"Show tabulated output in the Markdown format (GFM).\",\n    )\n    metrics_diff_parser.add_argument(\n        \"--no-path\",\n        action=\"store_true\",\n        default=False,\n        help=\"Don't show metric path.\",\n    )\n    metrics_diff_parser.add_argument(\n        \"--precision\",\n        type=int,\n        help=(\n            \"Round metrics to `n` digits precision after the decimal point. \"\n            f\"Rounds to {DEFAULT_PRECISION} digits by default.\"\n        ),\n        metavar=\"<n>\",\n    )\n    metrics_diff_parser.set_defaults(func=CmdMetricsDiff)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_COMPILED_SCHEMA_Config.init.return.Config_dvc_dir_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_COMPILED_SCHEMA_Config.init.return.Config_dvc_dir_", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 242, "end_line": 326, "span_ids": ["Config", "Config.init", "impl:16", "Config.__init__", "Config.get_dir", "Config.files"], "tokens": 584}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "COMPILED_SCHEMA = Schema(SCHEMA)\n\n\nclass Config(dict):\n    \"\"\"Class that manages configuration files for a DVC repo.\n\n    Args:\n        dvc_dir (str): optional path to `.dvc` directory, that is used to\n            access repo-specific configs like .dvc/config and\n            .dvc/config.local.\n        validate (bool): optional flag to tell dvc if it should validate the\n            config or just load it as is. 'True' by default.\n\n    Raises:\n        ConfigError: thrown if config has an invalid format.\n    \"\"\"\n\n    APPNAME = \"dvc\"\n    APPAUTHOR = \"iterative\"\n\n    # In the order they shadow each other\n    LEVELS = (\"system\", \"global\", \"repo\", \"local\")\n\n    CONFIG = \"config\"\n    CONFIG_LOCAL = \"config.local\"\n\n    def __init__(\n        self, dvc_dir=None, validate=True, tree=None, config=None,\n    ):  # pylint: disable=super-init-not-called\n        from dvc.tree.local import LocalTree\n\n        self.dvc_dir = dvc_dir\n\n        if not dvc_dir:\n            try:\n                from dvc.repo import Repo\n\n                self.dvc_dir = os.path.join(Repo.find_dvc_dir())\n            except NotDvcRepoError:\n                self.dvc_dir = None\n        else:\n            self.dvc_dir = os.path.abspath(os.path.realpath(dvc_dir))\n\n        self.wtree = LocalTree(None, {\"url\": self.dvc_dir})\n        self.tree = tree or self.wtree\n\n        self.load(validate=validate, config=config)\n\n    @classmethod\n    def get_dir(cls, level):\n        from appdirs import site_config_dir, user_config_dir\n\n        assert level in (\"global\", \"system\")\n\n        if level == \"global\":\n            return user_config_dir(cls.APPNAME, cls.APPAUTHOR)\n        if level == \"system\":\n            return site_config_dir(cls.APPNAME, cls.APPAUTHOR)\n\n    @cached_property\n    def files(self):\n        files = {\n            level: os.path.join(self.get_dir(level), self.CONFIG)\n            for level in (\"system\", \"global\")\n        }\n\n        if self.dvc_dir is not None:\n            files[\"repo\"] = os.path.join(self.dvc_dir, self.CONFIG)\n            files[\"local\"] = os.path.join(self.dvc_dir, self.CONFIG_LOCAL)\n\n        return files\n\n    @staticmethod\n    def init(dvc_dir):\n        \"\"\"Initializes dvc config.\n\n        Args:\n            dvc_dir (str): path to .dvc directory.\n\n        Returns:\n            dvc.config.Config: config object.\n        \"\"\"\n        config_file = os.path.join(dvc_dir, Config.CONFIG)\n        open(config_file, \"w+\").close()\n        return Config(dvc_dir)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config.load_Config.load.if_not_self_cache_get_.self_cache_dir_os": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config.load_Config.load.if_not_self_cache_get_.self_cache_dir_os", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 328, "end_line": 347, "span_ids": ["Config.load"], "tokens": 128}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Config(dict):\n\n    def load(self, validate=True, config=None):\n        \"\"\"Loads config from all the config files.\n\n        Raises:\n            ConfigError: thrown if config has an invalid format.\n        \"\"\"\n        conf = self.load_config_to_level()\n\n        if config is not None:\n            merge(conf, config)\n\n        if validate:\n            conf = self.validate(conf)\n\n        self.clear()\n        self.update(conf)\n\n        # Add resolved default cache.dir\n        if not self[\"cache\"].get(\"dir\") and self.dvc_dir:\n            self[\"cache\"][\"dir\"] = os.path.join(self.dvc_dir, \"cache\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._get_tree_Config.load_one.return.conf": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._get_tree_Config.load_one.return.conf", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 349, "end_line": 386, "span_ids": ["Config._save_config", "Config._get_tree", "Config._load_config", "Config.load_one"], "tokens": 277}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Config(dict):\n\n    def _get_tree(self, level):\n        # NOTE: this might be a GitTree, which doesn't see things outside of\n        # the repo.\n        return self.tree if level == \"repo\" else self.wtree\n\n    def _load_config(self, level):\n        filename = self.files[level]\n        tree = self._get_tree(level)\n\n        if tree.exists(filename, use_dvcignore=False):\n            with tree.open(filename) as fobj:\n                conf_obj = configobj.ConfigObj(fobj)\n        else:\n            conf_obj = configobj.ConfigObj()\n        return _parse_remotes(_lower_keys(conf_obj.dict()))\n\n    def _save_config(self, level, conf_dict):\n        filename = self.files[level]\n        tree = self._get_tree(level)\n\n        logger.debug(f\"Writing '{filename}'.\")\n\n        tree.makedirs(os.path.dirname(filename))\n\n        config = configobj.ConfigObj(_pack_remotes(conf_dict))\n        with tree.open(filename, \"wb\") as fobj:\n            config.write(fobj)\n        config.filename = filename\n\n    def load_one(self, level):\n        conf = self._load_config(level)\n        conf = self._load_paths(conf, self.files[level])\n\n        # Auto-verify sections\n        for key in COMPILED_SCHEMA.schema:\n            conf.setdefault(key, {})\n\n        return conf", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._map_dirs_Config.read.return.self_load_one_level_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config._map_dirs_Config.read.return.self_load_one_level_", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 422, "end_line": 453, "span_ids": ["Config.load_config_to_level", "Config._map_dirs", "Config.read"], "tokens": 226}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Config(dict):\n\n    @staticmethod\n    def _map_dirs(conf, func):\n        dirs_schema = {\n            \"cache\": {\"dir\": func},\n            \"remote\": {\n                str: {\n                    \"url\": func,\n                    \"gdrive_user_credentials_file\": func,\n                    \"gdrive_service_account_p12_file_path\": func,\n                    \"credentialpath\": func,\n                    \"keyfile\": func,\n                    \"cert_path\": func,\n                    \"key_path\": func,\n                }\n            },\n        }\n        return Schema(dirs_schema, extra=ALLOW_EXTRA)(conf)\n\n    def load_config_to_level(self, level=None):\n        merged_conf = {}\n        for merge_level in self.LEVELS:\n            if merge_level == level:\n                break\n            if merge_level in self.files:\n                merge(merged_conf, self.load_one(merge_level))\n        return merged_conf\n\n    def read(self, level=None):\n        # NOTE: we read from a merged config by default, same as git config\n        if level is None:\n            return self.load_config_to_level()\n        return self.load_one(level)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config.edit_Config.validate.try_.except_Invalid_as_exc_.raise_ConfigError_str_exc": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/config.py_Config.edit_Config.validate.try_.except_Invalid_as_exc_.raise_ConfigError_str_exc", "embedding": null, "metadata": {"file_path": "dvc/config.py", "file_name": "config.py", "file_type": "text/x-python", "category": "implementation", "start_line": 455, "end_line": 479, "span_ids": ["Config.validate", "Config.edit"], "tokens": 171}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Config(dict):\n\n    @contextmanager\n    def edit(self, level=None):\n        # NOTE: we write to repo config by default, same as git config\n        level = level or \"repo\"\n        if level in {\"repo\", \"local\"} and self.dvc_dir is None:\n            raise ConfigError(\"Not inside a DVC repo\")\n\n        conf = self.load_one(level)\n        yield conf\n\n        conf = self._save_paths(conf, self.files[level])\n\n        merged_conf = self.load_config_to_level(level)\n        merge(merged_conf, conf)\n        self.validate(merged_conf)\n\n        self._save_config(level, conf)\n        self.load()\n\n    @staticmethod\n    def validate(data):\n        try:\n            return COMPILED_SCHEMA(data)\n        except Invalid as exc:\n            raise ConfigError(str(exc)) from None", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_external_repo_external_repo.try_.finally_.if_for_write_._remove_path_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_external_repo_external_repo.try_.finally_.if_for_write_._remove_path_", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 36, "end_line": 72, "span_ids": ["external_repo"], "tokens": 291}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@contextmanager\ndef external_repo(url, rev=None, for_write=False, **kwargs):\n    logger.debug(\"Creating external repo %s@%s\", url, rev)\n    path = _cached_clone(url, rev, for_write=for_write)\n    # Local HEAD points to the tip of whatever branch we first cloned from\n    # (which may not be the default branch), use origin/HEAD here to get\n    # the tip of the default branch\n    rev = rev or \"refs/remotes/origin/HEAD\"\n\n    root_dir = path if for_write else os.path.realpath(path)\n    conf = dict(\n        root_dir=root_dir,\n        url=url,\n        scm=None if for_write else Git(root_dir),\n        rev=None if for_write else rev,\n        for_write=for_write,\n        uninitialized=True,\n        **kwargs,\n    )\n    repo = ExternalRepo(**conf)\n\n    try:\n        yield repo\n    except NoRemoteError as exc:\n        raise NoRemoteInExternalRepoError(url) from exc\n    except OutputNotFoundError as exc:\n        if exc.repo is repo:\n            raise NoOutputInExternalRepoError(\n                exc.output, repo.root_dir, url\n            ) from exc\n        raise\n    except FileMissingError as exc:\n        raise PathMissingError(exc.path, url) from exc\n    finally:\n        repo.close()\n        if for_write:\n            _remove(path)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_CLONES__get_remote_config.None_1.finally_.repo_close_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_CLONES__get_remote_config.None_1.finally_.repo_close_", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 75, "end_line": 110, "span_ids": ["clean_repos", "impl:3", "_get_remote_config"], "tokens": 242}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "CLONES: Dict[str, str] = {}\nCACHE_DIRS: Dict[str, str] = {}\n\n\ndef clean_repos():\n    # Outside code should not see cache while we are removing\n    paths = [path for path, _ in CLONES.values()] + list(CACHE_DIRS.values())\n    CLONES.clear()\n    CACHE_DIRS.clear()\n\n    for path in paths:\n        _remove(path)\n\n\ndef _get_remote_config(url):\n    try:\n        repo = Repo(url)\n    except NotDvcRepoError:\n        return {}\n\n    try:\n        name = repo.config[\"core\"].get(\"remote\")\n        if not name:\n            # Fill the empty upstream entry with a new remote pointing to the\n            # original repo's cache location.\n            name = \"auto-generated-upstream\"\n            return {\n                \"core\": {\"remote\": name},\n                \"remote\": {name: {\"url\": repo.cache.local.cache_dir}},\n            }\n\n        # Use original remote to make sure that we are using correct url,\n        # credential paths, etc if they are relative to the config location.\n        return {\"remote\": {name: repo.config[\"remote\"][name]}}\n    finally:\n        repo.close()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo._get_tree_for_ExternalRepo._get_cache_dir.return.cache_dir": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/external_repo.py_ExternalRepo._get_tree_for_ExternalRepo._get_cache_dir.return.cache_dir", "embedding": null, "metadata": {"file_path": "dvc/external_repo.py", "file_name": "external_repo.py", "file_type": "text/x-python", "category": "implementation", "start_line": 245, "end_line": 268, "span_ids": ["ExternalRepo._get_tree_for", "ExternalRepo._get_cache_dir", "ExternalRepo.make_repo"], "tokens": 212}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ExternalRepo(Repo):\n\n    def _get_tree_for(self, repo, **kwargs):\n        \"\"\"\n        Provides a combined tree of a single repo with dvc + git/local tree.\n        \"\"\"\n        kw = {**self.tree_confs, **kwargs}\n        if \"fetch\" not in kw:\n            kw[\"fetch\"] = True\n        return RepoTree(repo, **kw)\n\n    def make_repo(self, path):\n        config = self._cache_config.copy()\n        if os.path.isdir(self.url):\n            rel = os.path.relpath(path, self.root_dir)\n            repo_path = os.path.join(self.url, rel)\n            config.update(_get_remote_config(repo_path))\n        return Repo(path, scm=self.scm, rev=self.get_rev(), config=config)\n\n    @wrap_with(threading.Lock())\n    def _get_cache_dir(self):\n        try:\n            cache_dir = CACHE_DIRS[self.url]\n        except KeyError:\n            cache_dir = CACHE_DIRS[self.url] = tempfile.mkdtemp(\"dvc-cache\")\n        return cache_dir", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_ParamsLoadError_recurse_not_a_node.return.recurse_func_data_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/parsing/context.py_ParamsLoadError_recurse_not_a_node.return.recurse_func_data_", "embedding": null, "metadata": {"file_path": "dvc/parsing/context.py", "file_name": "context.py", "file_type": "text/x-python", "category": "implementation", "start_line": 65, "end_line": 94, "span_ids": ["_merge", "VarsAlreadyLoaded", "recurse_not_a_node", "KeyNotInContext.__init__", "KeyNotInContext", "ParamsLoadError"], "tokens": 174}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class ParamsLoadError(ContextError):\n    pass\n\n\nclass KeyNotInContext(ContextError):\n    def __init__(self, key) -> None:\n        self.key = key\n        super().__init__(f\"Could not find '{key}'\")\n\n\nclass VarsAlreadyLoaded(ContextError):\n    pass\n\n\ndef _merge(into, update, overwrite):\n    for key, val in update.items():\n        if isinstance(into.get(key), Mapping) and isinstance(val, Mapping):\n            _merge(into[key], val, overwrite)\n        else:\n            if key in into and not overwrite:\n                raise MergeError(key, val, into)\n            into[key] = val\n            assert isinstance(into[key], Node)\n\n\ndef recurse_not_a_node(data: dict):\n    def func(item):\n        assert not isinstance(item, Node)\n\n    return recurse(func)(data)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.reproduce_one_Experiments.reproduce_one.return.results": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.reproduce_one_Experiments.reproduce_one.return.results", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 329, "end_line": 353, "span_ids": ["Experiments.reproduce_one"], "tokens": 201}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def reproduce_one(self, queue=False, tmp_dir=False, **kwargs):\n        \"\"\"Reproduce and checkout a single experiment.\"\"\"\n        if not (queue or tmp_dir):\n            staged, _, _ = self.scm.status()\n            if staged:\n                logger.warning(\n                    \"Your workspace contains staged Git changes which will be \"\n                    \"unstaged before running this experiment.\"\n                )\n                self.scm.reset()\n\n        stash_rev = self.new(**kwargs)\n        if queue:\n            logger.info(\n                \"Queued experiment '%s' for future execution.\", stash_rev[:7],\n            )\n            return [stash_rev]\n        if tmp_dir or queue:\n            results = self._reproduce_revs(revs=[stash_rev], keep_stash=False)\n        else:\n            results = self._workspace_repro()\n        exp_rev = first(results)\n        if exp_rev is not None:\n            self._log_reproduced(results, tmp_dir=tmp_dir)\n        return results", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.reproduce_queued_Experiments.new.return.self__stash_exp_args_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/experiments/__init__.py_Experiments.reproduce_queued_Experiments.new.return.self__stash_exp_args_", "embedding": null, "metadata": {"file_path": "dvc/repo/experiments/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 355, "end_line": 396, "span_ids": ["Experiments._log_reproduced", "Experiments.new", "Experiments.reproduce_queued"], "tokens": 310}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Experiments:\n\n    def reproduce_queued(self, **kwargs):\n        results = self._reproduce_revs(**kwargs)\n        if results:\n            self._log_reproduced(results, tmp_dir=True)\n        return results\n\n    def _log_reproduced(self, revs: Iterable[str], tmp_dir: bool = False):\n        names = []\n        for rev in revs:\n            name = self.get_exact_name(rev)\n            names.append(name if name else rev[:7])\n        logger.info(\"\\nReproduced experiment(s): %s\", \", \".join(names))\n        if tmp_dir:\n            logger.info(\n                \"To apply the results of an experiment to your workspace \"\n                \"run:\\n\\n\"\n                \"\\tdvc exp apply <exp>\"\n            )\n        else:\n            logger.info(\n                \"Experiment results have been applied to your workspace.\"\n            )\n        logger.info(\n            \"\\nTo promote an experiment to a Git branch run:\\n\\n\"\n            \"\\tdvc exp branch <exp>\\n\"\n        )\n\n    @scm_locked\n    def new(\n        self, *args, checkpoint_resume: Optional[str] = None, **kwargs,\n    ):\n        \"\"\"Create a new experiment.\n\n        Experiment will be reproduced and checked out into the user's\n        workspace.\n        \"\"\"\n        if checkpoint_resume is not None:\n            return self._resume_checkpoint(\n                *args, checkpoint_resume=checkpoint_resume, **kwargs\n            )\n\n        return self._stash_exp(*args, **kwargs)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/get_url.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/get_url.py__", "embedding": null, "metadata": {"file_path": "dvc/repo/get_url.py", "file_name": "get_url.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 21, "span_ids": ["imports", "get_url"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport dvc.dependency as dependency\nimport dvc.output as output\nfrom dvc.utils import resolve_output\n\n\ndef get_url(url, out=None):\n    out = resolve_output(url, out)\n\n    if os.path.exists(url):\n        url = os.path.abspath(url)\n\n    out = os.path.abspath(out)\n\n    (dep,) = dependency.loads_from(None, [url])\n    (out,) = output.loads_from(None, [out], use_cache=False)\n    if not dep.exists:\n        raise dep.DoesNotExistError(dep)\n    dep.download(out)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/push.py_glob_targets_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/push.py_glob_targets_", "embedding": null, "metadata": {"file_path": "dvc/repo/push.py", "file_name": "push.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 42, "span_ids": ["imports", "push"], "tokens": 213}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from ..utils import glob_targets\nfrom . import locked\n\n\n@locked\ndef push(\n    self,\n    targets=None,\n    jobs=None,\n    remote=None,\n    all_branches=False,\n    with_deps=False,\n    all_tags=False,\n    recursive=False,\n    all_commits=False,\n    run_cache=False,\n    revs=None,\n    glob=False,\n):\n    used_run_cache = self.stage_cache.push(remote) if run_cache else []\n\n    if isinstance(targets, str):\n        targets = [targets]\n\n    expanded_targets = glob_targets(targets, glob=glob)\n\n    used = self.used_cache(\n        expanded_targets,\n        all_branches=all_branches,\n        all_tags=all_tags,\n        all_commits=all_commits,\n        with_deps=with_deps,\n        force=True,\n        remote=remote,\n        jobs=jobs,\n        recursive=recursive,\n        used_run_cache=used_run_cache,\n        revs=revs,\n    )\n\n    return len(used_run_cache) + self.cloud.push(used, jobs, remote=remote)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py_logging__reproduce_stage.return._stage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py_logging__reproduce_stage.return._stage_", "embedding": null, "metadata": {"file_path": "dvc/repo/reproduce.py", "file_name": "reproduce.py", "file_type": "text/x-python", "category": "implementation", "start_line": 1, "end_line": 52, "span_ids": ["imports", "_reproduce_stage"], "tokens": 299}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import logging\nimport os\nimport typing\nfrom functools import partial\n\nfrom dvc.exceptions import ReproductionError\nfrom dvc.repo.scm_context import scm_context\nfrom dvc.stage.run import CheckpointKilledError\n\nfrom . import locked\nfrom .graph import get_pipeline, get_pipelines\n\nif typing.TYPE_CHECKING:\n    from . import Repo\n\nlogger = logging.getLogger(__name__)\n\n\ndef _reproduce_stage(stage, **kwargs):\n    def _run_callback(repro_callback):\n        _dump_stage(stage)\n        _track_stage(stage)\n        repro_callback([stage])\n\n    checkpoint_func = kwargs.pop(\"checkpoint_func\", None)\n    if stage.is_checkpoint:\n        if checkpoint_func:\n            kwargs[\"checkpoint_func\"] = partial(_run_callback, checkpoint_func)\n        else:\n            logger.warning(\n                \"Checkpoint stages are not fully supported in 'dvc repro'. \"\n                \"Checkpoint stages should be reproduced with 'dvc exp run' \"\n                \"or 'dvc exp resume'.\"\n            )\n\n    if stage.frozen and not stage.is_import:\n        logger.warning(\n            \"{} is frozen. Its dependencies are\"\n            \" not going to be reproduced.\".format(stage)\n        )\n\n    stage = stage.reproduce(**kwargs)\n    if not stage:\n        return []\n\n    if not kwargs.get(\"dry\", False):\n        track = checkpoint_func is not None\n        _dump_stage(stage)\n        if track:\n            _track_stage(stage)\n\n    return [stage]", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py__dump_stage__track_stage.stage_repo_scm_track_chan": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/repo/reproduce.py__dump_stage__track_stage.stage_repo_scm_track_chan", "embedding": null, "metadata": {"file_path": "dvc/repo/reproduce.py", "file_name": "reproduce.py", "file_type": "text/x-python", "category": "implementation", "start_line": 55, "end_line": 70, "span_ids": ["_track_stage", "_dump_stage"], "tokens": 142}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def _dump_stage(stage):\n    from ..dvcfile import Dvcfile\n\n    dvcfile = Dvcfile(stage.repo, stage.path)\n    dvcfile.dump(stage, update_pipeline=False)\n\n\ndef _track_stage(stage):\n    stage.repo.scm.track_file(stage.dvcfile.path)\n    for dep in stage.deps:\n        if not dep.use_scm_ignore and dep.is_in_repo:\n            stage.repo.scm.track_file(os.fspath(dep.path_info))\n    for out in stage.outs:\n        if not out.use_scm_ignore and out.is_in_repo:\n            stage.repo.scm.track_file(os.fspath(out.path_info))\n    stage.repo.scm.track_changed_files()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.set_ref_Git.status.partialmethod__backend_fu": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/__init__.py_Git.set_ref_Git.status.partialmethod__backend_fu", "embedding": null, "metadata": {"file_path": "dvc/scm/git/__init__.py", "file_name": "__init__.py", "file_type": "text/x-python", "category": "implementation", "start_line": 342, "end_line": 358, "span_ids": ["Git:11"], "tokens": 249}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Git(Base):\n\n    set_ref = partialmethod(_backend_func, \"set_ref\")\n    get_ref = partialmethod(_backend_func, \"get_ref\")\n    remove_ref = partialmethod(_backend_func, \"remove_ref\")\n    iter_refs = partialmethod(_backend_func, \"iter_refs\")\n    iter_remote_refs = partialmethod(_backend_func, \"iter_remote_refs\")\n    get_refs_containing = partialmethod(_backend_func, \"get_refs_containing\")\n    push_refspec = partialmethod(_backend_func, \"push_refspec\")\n    fetch_refspecs = partialmethod(_backend_func, \"fetch_refspecs\")\n    _stash_iter = partialmethod(_backend_func, \"_stash_iter\")\n    _stash_push = partialmethod(_backend_func, \"_stash_push\")\n    _stash_apply = partialmethod(_backend_func, \"_stash_apply\")\n    reflog_delete = partialmethod(_backend_func, \"reflog_delete\")\n    describe = partialmethod(_backend_func, \"describe\")\n    diff = partialmethod(_backend_func, \"diff\")\n    reset = partialmethod(_backend_func, \"reset\")\n    checkout_paths = partialmethod(_backend_func, \"checkout_paths\")\n    status = partialmethod(_backend_func, \"status\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.describe_BaseGitBackend.describe._Return_the_first_ref_w": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.describe_BaseGitBackend.describe._Return_the_first_ref_w", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 262, "end_line": 282, "span_ids": ["BaseGitBackend.describe"], "tokens": 156}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def describe(\n        self,\n        rev: str,\n        base: Optional[str] = None,\n        match: Optional[str] = None,\n        exclude: Optional[str] = None,\n    ) -> Optional[str]:\n        \"\"\"Return the first ref which points to rev.\n\n        Roughly equivalent to `git describe --all --exact-match`.\n\n        If no matching ref was found, returns None.\n\n        Optional kwargs:\n            base: Base ref prefix to search, defaults to \"refs/tags\"\n            match: Glob pattern. If specified only refs matching this glob\n                pattern will be returned.\n            exclude: Glob pattern. If specified, only refs which do not match\n                this pattern will be returned.\n        \"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.diff_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/base.py_BaseGitBackend.diff_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/base.py", "file_name": "base.py", "file_type": "text/x-python", "category": "implementation", "start_line": 284, "end_line": 308, "span_ids": ["BaseGitBackend.status", "BaseGitBackend.reset", "BaseGitBackend.diff", "BaseGitBackend.checkout_paths"], "tokens": 200}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class BaseGitBackend(ABC):\n\n    @abstractmethod\n    def diff(self, rev_a: str, rev_b: str, binary=False) -> str:\n        \"\"\"Return the git diff for two commits.\"\"\"\n\n    @abstractmethod\n    def reset(self, hard: bool = False, paths: Iterable[str] = None):\n        \"\"\"Reset current git HEAD.\"\"\"\n\n    @abstractmethod\n    def checkout_paths(self, paths: Iterable[str], force: bool = False):\n        \"\"\"Checkout the specified paths from HEAD index.\"\"\"\n\n    @abstractmethod\n    def status(\n        self, ignored: bool = False\n    ) -> Tuple[Mapping[str, Iterable[str]], Iterable[str], Iterable[str]]:\n        \"\"\"Return tuple of (staged_files, unstaged_files, untracked_files).\n\n        staged_files will be a dict mapping status (add, delete, modify) to a\n        list of paths.\n\n        If ignored is True, gitignored files will be included in\n        untracked_paths.\n        \"\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.diff_DulwichBackend.checkout_paths.raise_NotImplementedError": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.diff_DulwichBackend.checkout_paths.raise_NotImplementedError", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 518, "end_line": 534, "span_ids": ["DulwichBackend.checkout_paths", "DulwichBackend.reset", "DulwichBackend.diff"], "tokens": 150}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def diff(self, rev_a: str, rev_b: str, binary=False) -> str:\n        from dulwich.patch import write_tree_diff\n\n        commit_a = self.repo[os.fsencode(rev_a)]\n        commit_b = self.repo[os.fsencode(rev_b)]\n\n        buf = BytesIO()\n        write_tree_diff(\n            buf, self.repo.object_store, commit_a.tree, commit_b.tree\n        )\n        return buf.getvalue().decode(\"utf-8\")\n\n    def reset(self, hard: bool = False, paths: Iterable[str] = None):\n        raise NotImplementedError\n\n    def checkout_paths(self, paths: Iterable[str], force: bool = False):\n        raise NotImplementedError", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.status_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/backend/dulwich.py_DulwichBackend.status_", "embedding": null, "metadata": {"file_path": "dvc/scm/git/backend/dulwich.py", "file_name": "dulwich.py", "file_type": "text/x-python", "category": "implementation", "start_line": 536, "end_line": 553, "span_ids": ["DulwichBackend.status"], "tokens": 133}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class DulwichBackend(BaseGitBackend):\n\n    def status(\n        self, ignored: bool = False\n    ) -> Tuple[Mapping[str, Iterable[str]], Iterable[str], Iterable[str]]:\n        from dulwich.porcelain import status as git_status\n\n        staged, unstaged, untracked = git_status(\n            self.root_dir, ignored=ignored\n        )\n        return (\n            {\n                status: [os.fsdecode(name)]\n                for status, paths in staged.items()\n                for name in paths\n            },\n            [os.fsdecode(name) for name in unstaged],\n            [os.fsdecode(name) for name in untracked],\n        )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py_Stash.push_Stash.push.return.rev": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py_Stash.push_Stash.push.return.rev", "embedding": null, "metadata": {"file_path": "dvc/scm/git/stash.py", "file_name": "stash.py", "file_type": "text/x-python", "category": "implementation", "start_line": 34, "end_line": 47, "span_ids": ["Stash.push"], "tokens": 130}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stash:\n\n    def push(\n        self, message: Optional[str] = None, include_untracked: bool = False,\n    ) -> Optional[str]:\n        if not self.scm.is_dirty(untracked_files=include_untracked):\n            logger.debug(\"No changes to stash\")\n            return None\n\n        logger.debug(\"Stashing changes in '%s'\", self.ref)\n        rev, reset = self.scm._stash_push(  # pylint: disable=protected-access\n            self.ref, message=message, include_untracked=include_untracked\n        )\n        if reset:\n            self.scm.reset(hard=True)\n        return rev", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py_Stash.pop_Stash.apply._pylint_disable_protect": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/dvc/scm/git/stash.py_Stash.pop_Stash.apply._pylint_disable_protect", "embedding": null, "metadata": {"file_path": "dvc/scm/git/stash.py", "file_name": "stash.py", "file_type": "text/x-python", "category": "implementation", "start_line": 49, "end_line": 62, "span_ids": ["Stash.apply", "Stash.pop"], "tokens": 122}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "class Stash:\n\n    def pop(self):\n        logger.debug(\"Popping from stash '%s'\", self.ref)\n        ref = \"{0}@{{0}}\".format(self.ref)\n        rev = self.scm.resolve_rev(ref)\n        try:\n            self.apply(rev)\n        except Exception as exc:\n            raise SCMError(\"Could not apply stash commit\") from exc\n        self.drop()\n        return rev\n\n    def apply(self, rev):\n        logger.debug(\"Applying stash commit '%s'\", rev)\n        self.scm._stash_apply(rev)  # pylint: disable=protected-access", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_malformed_plots_test_show_no_plots_files.with_pytest_raises_NoMetr.dvc_plots_show_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/plots/test_show.py_test_show_malformed_plots_test_show_no_plots_files.with_pytest_raises_NoMetr.dvc_plots_show_", "embedding": null, "metadata": {"file_path": "tests/func/plots/test_show.py", "file_name": "test_show.py", "file_type": "text/x-python", "category": "test", "start_line": 715, "end_line": 729, "span_ids": ["test_show_no_plots_files", "test_plots_show_no_target", "test_show_malformed_plots"], "tokens": 121}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_show_malformed_plots(tmp_dir, scm, dvc, caplog):\n    tmp_dir.gen(\"plot.json\", '[{\"m\":1]')\n\n    with pytest.raises(NoMetricsParsedError):\n        dvc.plots.show(targets=[\"plot.json\"])\n\n\ndef test_plots_show_no_target(tmp_dir, dvc):\n    with pytest.raises(MetricDoesNotExistError):\n        dvc.plots.show(targets=[\"plot.json\"])\n\n\ndef test_show_no_plots_files(tmp_dir, dvc, caplog):\n    with pytest.raises(NoMetricsFoundError):\n        dvc.plots.show()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_test_default_cache_type_test_shared_cache.for_root_dnames_fnames_.for_fname_in_fnames_.assert_stat_S_IMODE_os_st": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_test_default_cache_type_test_shared_cache.for_root_dnames_fnames_.for_fname_in_fnames_.assert_stat_S_IMODE_os_st", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 191, "end_line": 216, "span_ids": ["test_default_cache_type", "test_shared_cache"], "tokens": 242}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_default_cache_type(dvc):\n    assert dvc.cache.local.cache_types == [\"reflink\", \"copy\"]\n\n\n@pytest.mark.skipif(os.name == \"nt\", reason=\"Not supported for Windows.\")\n@pytest.mark.parametrize(\n    \"group, dir_mode\", [(False, 0o755), (True, 0o775)],\n)\ndef test_shared_cache(tmp_dir, dvc, group, dir_mode):\n    if group:\n        with dvc.config.edit() as conf:\n            conf[\"cache\"].update({\"shared\": \"group\"})\n    dvc.cache = Cache(dvc)\n\n    tmp_dir.dvc_gen(\n        {\"file\": \"file content\", \"dir\": {\"file2\": \"file 2 \" \"content\"}}\n    )\n\n    for root, dnames, fnames in os.walk(dvc.cache.local.cache_dir):\n        for dname in dnames:\n            path = os.path.join(root, dname)\n            assert stat.S_IMODE(os.stat(path).st_mode) == dir_mode\n\n        for fname in fnames:\n            path = os.path.join(root, fname)\n            assert stat.S_IMODE(os.stat(path).st_mode) == 0o444", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_test_cache_dir_local_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_cache.py_test_cache_dir_local_", "embedding": null, "metadata": {"file_path": "tests/func/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 219, "end_line": 241, "span_ids": ["test_cache_dir_local"], "tokens": 170}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cache_dir_local(tmp_dir, dvc, caplog):\n    (tmp_dir / \".dvc\" / \"config.local\").write_text(\n        textwrap.dedent(\n            \"\"\"\\\n            [cache]\n                dir = some/path\n            \"\"\"\n        )\n    )\n    path = os.path.join(dvc.dvc_dir, \"some\", \"path\")\n\n    caplog.clear()\n    assert main([\"cache\", \"dir\", \"--local\"]) == 0\n    assert path in caplog.text\n\n    caplog.clear()\n    assert main([\"cache\", \"dir\"]) == 0\n    assert path in caplog.text\n\n    caplog.clear()\n    assert main([\"cache\", \"dir\", \"--repo\"]) == 251\n    assert \"option 'dir' doesn't exist in section 'cache'\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_os_test_config_set.None_8": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_os_test_config_set.None_8", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 38, "span_ids": ["imports", "test_config_set"], "tokens": 278}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\nimport textwrap\n\nimport pytest\n\nfrom dvc.config import Config, ConfigError\nfrom dvc.main import main\n\n\ndef test_config_set(tmp_dir, dvc):\n    assert main([\"config\", \"core.analytics\", \"false\"]) == 0\n    assert (tmp_dir / \".dvc\" / \"config\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            no_scm = True\n            analytics = false\n        \"\"\"\n    )\n    assert not (tmp_dir / \".dvc\" / \"config.local\").exists()\n\n    assert main([\"config\", \"core.analytics\", \"true\"]) == 0\n    assert (tmp_dir / \".dvc\" / \"config\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            no_scm = True\n            analytics = true\n        \"\"\"\n    )\n    assert not (tmp_dir / \".dvc\" / \"config.local\").exists()\n\n    assert main([\"config\", \"core.analytics\", \"--unset\"]) == 0\n    assert (tmp_dir / \".dvc\" / \"config\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            no_scm = True\n        \"\"\"\n    )\n    assert not (tmp_dir / \".dvc\" / \"config.local\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_set_local_test_config_set_local.None_8": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_set_local_test_config_set_local.None_8", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 41, "end_line": 77, "span_ids": ["test_config_set_local"], "tokens": 301}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_config_set_local(tmp_dir, dvc):\n    assert main([\"config\", \"core.analytics\", \"false\", \"--local\"]) == 0\n    assert (tmp_dir / \".dvc\" / \"config\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            no_scm = True\n        \"\"\"\n    )\n    assert (tmp_dir / \".dvc\" / \"config.local\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            analytics = false\n        \"\"\"\n    )\n\n    assert main([\"config\", \"core.analytics\", \"true\", \"--local\"]) == 0\n    assert (tmp_dir / \".dvc\" / \"config\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            no_scm = True\n        \"\"\"\n    )\n    assert (tmp_dir / \".dvc\" / \"config.local\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            analytics = true\n        \"\"\"\n    )\n\n    assert main([\"config\", \"core.analytics\", \"--unset\", \"--local\"]) == 0\n    assert (tmp_dir / \".dvc\" / \"config\").read_text() == textwrap.dedent(\n        \"\"\"\\\n        [core]\n            no_scm = True\n        \"\"\"\n    )\n    assert (tmp_dir / \".dvc\" / \"config.local\").read_text() == \"\\n\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_get_test_config_get.assert_msg_in_caplog_text": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_get_test_config_get.assert_msg_in_caplog_text", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 80, "end_line": 124, "span_ids": ["test_config_get"], "tokens": 343}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"args, ret, msg\",\n    [\n        ([\"core.analytics\"], 0, \"False\"),\n        ([\"core.remote\"], 0, \"myremote\"),\n        ([\"remote.myremote.profile\"], 0, \"iterative\"),\n        ([\"remote.myremote.profile\", \"--local\"], 0, \"iterative\"),\n        (\n            [\"remote.myremote.profile\", \"--repo\"],\n            251,\n            \"option 'profile' doesn't exist\",\n        ),\n        ([\"remote.other.url\"], 0, \"gs://bucket/path\"),\n        ([\"remote.other.url\", \"--local\"], 0, \"gs://bucket/path\"),\n        ([\"remote.other.url\", \"--repo\"], 251, \"remote 'other' doesn't exist\"),\n    ],\n)\ndef test_config_get(tmp_dir, dvc, caplog, args, ret, msg):\n    (tmp_dir / \".dvc\" / \"config\").write_text(\n        textwrap.dedent(\n            \"\"\"\\\n        [core]\n            no_scm = true\n            analytics = False\n            remote = myremote\n        ['remote \"myremote\"']\n            url = s3://bucket/path\n            region = us-east-2\n        \"\"\"\n        )\n    )\n    (tmp_dir / \".dvc\" / \"config.local\").write_text(\n        textwrap.dedent(\n            \"\"\"\\\n        ['remote \"myremote\"']\n            profile = iterative\n        ['remote \"other\"']\n            url = gs://bucket/path\n        \"\"\"\n        )\n    )\n\n    caplog.clear()\n    assert main([\"config\"] + args) == ret\n    assert msg in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_list_test_config_list.assert_core_remote_myrem": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_list_test_config_list.assert_core_remote_myrem", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 127, "end_line": 164, "span_ids": ["test_config_list"], "tokens": 331}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_config_list(tmp_dir, dvc, caplog):\n    (tmp_dir / \".dvc\" / \"config\").write_text(\n        textwrap.dedent(\n            \"\"\"\\\n        [core]\n            no_scm = true\n            analytics = False\n            remote = myremote\n        ['remote \"myremote\"']\n            url = s3://bucket/path\n            region = us-east-2\n        \"\"\"\n        )\n    )\n    (tmp_dir / \".dvc\" / \"config.local\").write_text(\n        textwrap.dedent(\n            \"\"\"\\\n        ['remote \"myremote\"']\n            profile = iterative\n            access_key_id = abcde\n            secret_access_key = 123456\n        ['remote \"other\"']\n            url = gs://bucket/path\n        \"\"\"\n        )\n    )\n\n    caplog.clear()\n    assert main([\"config\", \"--list\"]) == 0\n    assert \"remote.myremote.url=s3://bucket/path\" in caplog.text\n    assert \"remote.myremote.region=us-east-2\" in caplog.text\n    assert \"remote.myremote.profile=iterative\" in caplog.text\n    assert \"remote.myremote.access_key_id=abcde\" in caplog.text\n    assert \"remote.myremote.secret_access_key=123456\" in caplog.text\n    assert \"remote.other.url=gs://bucket/path\" in caplog.text\n    assert \"core.analytics=False\" in caplog.text\n    assert \"core.no_scm=true\" in caplog.text\n    assert \"core.remote=myremote\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_list_bad_args_test_set_invalid_key.with_pytest_raises_Config.with_dvc_config_edit_as.conf_core_invalid_key": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_list_bad_args_test_set_invalid_key.with_pytest_raises_Config.with_dvc_config_edit_as.conf_core_invalid_key", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 167, "end_line": 182, "span_ids": ["test_list_bad_args", "test_set_invalid_key"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"args\", [[\"core.analytics\"], [\"core.analytics\", \"false\"], [\"--unset\"]]\n)\ndef test_list_bad_args(tmp_dir, dvc, caplog, args):\n    caplog.clear()\n    assert main([\"config\", \"--list\"] + args) == 1\n    assert (\n        \"-l/--list can't be used together with any of these options: \"\n        \"-u/--unset, name, value\"\n    ) in caplog.text\n\n\ndef test_set_invalid_key(dvc):\n    with pytest.raises(ConfigError, match=r\"extra keys not allowed\"):\n        with dvc.config.edit() as conf:\n            conf[\"core\"][\"invalid_key\"] = \"value\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_merging_two_levels_test_config_loads_without_error_for_non_dvc_repo.Config_validate_True_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_merging_two_levels_test_config_loads_without_error_for_non_dvc_repo.Config_validate_True_", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 185, "end_line": 206, "span_ids": ["test_merging_two_levels", "test_config_loads_without_error_for_non_dvc_repo"], "tokens": 180}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_merging_two_levels(dvc):\n    with dvc.config.edit() as conf:\n        conf[\"remote\"][\"test\"] = {\"url\": \"ssh://example.com\"}\n\n    with pytest.raises(\n        ConfigError, match=r\"expected 'url' for dictionary value\"\n    ):\n        with dvc.config.edit(\"global\") as conf:\n            conf[\"remote\"][\"test\"] = {\"password\": \"1\"}\n\n    with dvc.config.edit(\"local\") as conf:\n        conf[\"remote\"][\"test\"] = {\"password\": \"1\"}\n\n    assert dvc.config[\"remote\"][\"test\"] == {\n        \"url\": \"ssh://example.com\",\n        \"password\": \"1\",\n    }\n\n\ndef test_config_loads_without_error_for_non_dvc_repo(tmp_dir):\n    # regression testing for https://github.com/iterative/dvc/issues/3328\n    Config(validate=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_remote_test_config_remote.assert_myregion_in_capl": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_remote_test_config_remote.assert_myregion_in_capl", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 240, "end_line": 253, "span_ids": ["test_config_remote"], "tokens": 130}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_config_remote(tmp_dir, dvc, caplog):\n    (tmp_dir / \".dvc\" / \"config\").write_text(\n        \"['remote \\\"myremote\\\"']\\n\"\n        \"  url = s3://bucket/path\\n\"\n        \"  region = myregion\\n\"\n    )\n\n    caplog.clear()\n    assert main([\"config\", \"remote.myremote.url\"]) == 0\n    assert \"s3://bucket/path\" in caplog.text\n\n    caplog.clear()\n    assert main([\"config\", \"remote.myremote.region\"]) == 0\n    assert \"myregion\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_show_origin_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_config.py_test_config_show_origin_", "embedding": null, "metadata": {"file_path": "tests/func/test_config.py", "file_name": "test_config.py", "file_type": "text/x-python", "category": "test", "start_line": 256, "end_line": 281, "span_ids": ["test_config_show_origin"], "tokens": 203}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_config_show_origin(tmp_dir, dvc, caplog):\n    (tmp_dir / \".dvc\" / \"config\").write_text(\n        \"['remote \\\"myremote\\\"']\\n\"\n        \"  url = s3://bucket/path\\n\"\n        \"  region = myregion\\n\"\n    )\n\n    caplog.clear()\n    assert (\n        main([\"config\", \"--show-origin\", \"--repo\", \"remote.myremote.url\"]) == 0\n    )\n    assert (\n        \"{}\\t{}\\n\".format(os.path.join(\".dvc\", \"config\"), \"s3://bucket/path\")\n        in caplog.text\n    )\n\n    caplog.clear()\n    assert main([\"config\", \"--list\", \"--repo\", \"--show-origin\"]) == 0\n    assert (\n        \"{}\\t{}\\n\".format(\n            os.path.join(\".dvc\", \"config\"),\n            \"remote.myremote.url=s3://bucket/path\",\n        )\n        in caplog.text\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_push_wildcard_from_bare_git_repo_test_push_wildcard_from_bare_git_repo.with_dvc_repo_chdir_.with_pytest_raises_Collec.dvc_repo_dvc_imp_os_fspat": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_import.py_test_push_wildcard_from_bare_git_repo_test_push_wildcard_from_bare_git_repo.with_dvc_repo_chdir_.with_pytest_raises_Collec.dvc_repo_dvc_imp_os_fspat", "embedding": null, "metadata": {"file_path": "tests/func/test_import.py", "file_name": "test_import.py", "file_type": "text/x-python", "category": "test", "start_line": 267, "end_line": 294, "span_ids": ["test_push_wildcard_from_bare_git_repo"], "tokens": 251}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_push_wildcard_from_bare_git_repo(\n    tmp_dir, make_tmp_dir, erepo_dir, local_cloud\n):\n    import git\n\n    git.Repo.init(os.fspath(tmp_dir), bare=True)\n\n    erepo_dir.add_remote(config=local_cloud.config)\n    with erepo_dir.chdir():\n        erepo_dir.dvc_gen(\n            {\n                \"dir123\": {\"foo\": \"foo content\"},\n                \"dirextra\": {\"extrafoo\": \"extra foo content\"},\n            },\n            commit=\"initial\",\n        )\n    erepo_dir.dvc.push(\n        [os.path.join(os.fspath(erepo_dir), \"dire*\")], glob=True\n    )\n\n    erepo_dir.scm.gitpython.repo.create_remote(\"origin\", os.fspath(tmp_dir))\n    erepo_dir.scm.gitpython.repo.remote(\"origin\").push(\"master\")\n\n    dvc_repo = make_tmp_dir(\"dvc-repo\", scm=True, dvc=True)\n    with dvc_repo.chdir():\n        dvc_repo.dvc.imp(os.fspath(tmp_dir), \"dirextra\")\n        with pytest.raises(CollectCacheError):\n            dvc_repo.dvc.imp(os.fspath(tmp_dir), \"dir123\")", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_os_test_remove.assert_not_tmp_dir_g": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_os_test_remove.assert_not_tmp_dir_g", "embedding": null, "metadata": {"file_path": "tests/func/test_remove.py", "file_name": "test_remove.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 32, "span_ids": ["imports", "test_remove"], "tokens": 262}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import os\n\nimport pytest\n\nfrom dvc.exceptions import DvcException\nfrom dvc.main import main\nfrom dvc.stage.exceptions import StageFileDoesNotExistError\nfrom dvc.system import System\nfrom dvc.utils.fs import remove\nfrom tests.utils import get_gitignore_content\n\n\n@pytest.mark.parametrize(\"remove_outs\", [True, False])\ndef test_remove(tmp_dir, scm, dvc, run_copy, remove_outs):\n    (stage1,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage2 = run_copy(\"foo\", \"bar\", single_stage=True)\n    stage3 = run_copy(\"bar\", \"foobar\", name=\"copy-bar-foobar\")\n\n    assert \"/foo\" in get_gitignore_content()\n    assert \"/bar\" in get_gitignore_content()\n    assert \"/foobar\" in get_gitignore_content()\n\n    for stage in [stage1, stage2, stage3]:\n        dvc.remove(stage.addressing, outs=remove_outs)\n        out_exists = (out.exists for out in stage.outs)\n        assert stage not in dvc.stage.collect_repo()\n        if remove_outs:\n            assert not any(out_exists)\n        else:\n            assert all(out_exists)\n\n    assert not (tmp_dir / \".gitignore\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_cmd_remove_test_cmd_remove.assert_not_tmp_dir_fo": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_cmd_remove_test_cmd_remove.assert_not_tmp_dir_fo", "embedding": null, "metadata": {"file_path": "tests/func/test_remove.py", "file_name": "test_remove.py", "file_type": "text/x-python", "category": "test", "start_line": 60, "end_line": 71, "span_ids": ["test_cmd_remove"], "tokens": 139}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cmd_remove(tmp_dir, dvc):\n    assert main([\"remove\", \"non-existing-dvc-file\"]) == 1\n\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert main([\"remove\", stage.addressing]) == 0\n    assert not (tmp_dir / stage.relpath).exists()\n    assert (tmp_dir / \"foo\").exists()\n\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    assert main([\"remove\", stage.addressing, \"--outs\"]) == 0\n    assert not (tmp_dir / stage.relpath).exists()\n    assert not (tmp_dir / \"foo\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_cmd_remove_gitignore_single_stage_test_cmd_remove_gitignore_single_stage.assert_not_tmp_dir_g": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_cmd_remove_gitignore_single_stage_test_cmd_remove_gitignore_single_stage.assert_not_tmp_dir_g", "embedding": null, "metadata": {"file_path": "tests/func/test_remove.py", "file_name": "test_remove.py", "file_type": "text/x-python", "category": "test", "start_line": 74, "end_line": 84, "span_ids": ["test_cmd_remove_gitignore_single_stage"], "tokens": 114}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cmd_remove_gitignore_single_stage(tmp_dir, scm, dvc, run_copy):\n    stage = dvc.run(\n        name=\"my\", cmd='echo \"hello\" > out', deps=[], outs=[\"out\"],\n    )\n\n    assert (tmp_dir / \".gitignore\").exists()\n\n    assert main([\"remove\", stage.addressing]) == 0\n    assert not (tmp_dir / stage.relpath).exists()\n    assert not (stage.dvcfile._lockfile).exists()\n    assert not (tmp_dir / \".gitignore\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_cmd_remove_gitignore_multistage_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_remove.py_test_cmd_remove_gitignore_multistage_", "embedding": null, "metadata": {"file_path": "tests/func/test_remove.py", "file_name": "test_remove.py", "file_type": "text/x-python", "category": "test", "start_line": 87, "end_line": 98, "span_ids": ["test_cmd_remove_gitignore_multistage"], "tokens": 146}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_cmd_remove_gitignore_multistage(tmp_dir, scm, dvc, run_copy):\n    (stage,) = tmp_dir.dvc_gen(\"foo\", \"foo\")\n    stage1 = run_copy(\"foo\", \"foo1\", single_stage=True)\n    stage2 = run_copy(\"foo1\", \"foo2\", name=\"copy-foo1-foo2\")\n\n    assert (tmp_dir / \".gitignore\").exists()\n\n    assert main([\"remove\", stage2.addressing]) == 0\n    assert main([\"remove\", stage1.addressing]) == 0\n    assert main([\"remove\", stage.addressing]) == 0\n    assert not (tmp_dir / \".gitignore\").exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_root.py__": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/func/test_root.py__", "embedding": null, "metadata": {"file_path": "tests/func/test_root.py", "file_name": "test_root.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 14, "span_ids": ["imports", "test_root_locked", "test_root"], "tokens": 98}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "from dvc.main import main\n\n\ndef test_root(tmp_dir, dvc, caplog):\n    assert main([\"root\"]) == 0\n    assert \".\\n\" in caplog.text\n\n\ndef test_root_locked(tmp_dir, dvc, caplog):\n    # NOTE: check that `dvc root` is not blocked with dvc lock\n    with dvc.lock:\n        assert main([\"root\"]) == 0\n    assert \".\\n\" in caplog.text", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_precision_test_metrics_show_precision.None_2": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_precision_test_metrics_show_precision.None_2", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 303, "end_line": 333, "span_ids": ["test_metrics_show_precision"], "tokens": 274}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_precision():\n    metrics = {\n        \"branch_1\": {\n            \"metrics.json\": {\n                \"a\": 1.098765366365355,\n                \"b\": {\"ad\": 1.5342673, \"bc\": 2.987725527},\n            }\n        }\n    }\n\n    assert _show_metrics(metrics, all_branches=True,) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path          a        b.ad     b.bc\n        branch_1    metrics.json  1.09877  1.53427  2.98773\"\"\"\n    )\n\n    assert _show_metrics(\n        metrics, all_branches=True, precision=4\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path          a       b.ad    b.bc\n        branch_1    metrics.json  1.0988  1.5343  2.9877\"\"\"\n    )\n\n    assert _show_metrics(\n        metrics, all_branches=True, precision=7\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Revision    Path          a          b.ad       b.bc\n        branch_1    metrics.json  1.0987654  1.5342673  2.9877255\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_default_test_metrics_show_default.assert__show_metrics_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_default_test_metrics_show_default.assert__show_metrics_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 336, "end_line": 351, "span_ids": ["test_metrics_show_default"], "tokens": 152}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_default():\n    assert _show_metrics(\n        {\n            \"metrics.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6},\n                \"a.d.e\": {\"old\": 3, \"new\": 4, \"diff\": 1},\n                \"a.b.c\": {\"old\": 1, \"new\": 2, \"diff\": 1},\n            }\n        },\n    ) == textwrap.dedent(\n        \"\"\"\\\n        Path    diff    new    old\n        x.b     \u2014       6      5\n        a.d.e   1       4      3\n        a.b.c   1       2      1\"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_md_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/command/test_metrics.py_test_metrics_show_md_", "embedding": null, "metadata": {"file_path": "tests/unit/command/test_metrics.py", "file_name": "test_metrics.py", "file_type": "text/x-python", "category": "test", "start_line": 354, "end_line": 373, "span_ids": ["test_metrics_show_md"], "tokens": 188}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_metrics_show_md():\n    assert _show_metrics(\n        {\n            \"metrics.yaml\": {\n                \"x.b\": {\"old\": 5, \"new\": 6},\n                \"a.d.e\": {\"old\": 3, \"new\": 4, \"diff\": 1},\n                \"a.b.c\": {\"old\": 1, \"new\": 2, \"diff\": 1},\n            }\n        },\n        markdown=True,\n    ) == textwrap.dedent(\n        \"\"\"\\\n        | Path   | diff   | new   | old   |\n        |--------|--------|-------|-------|\n        | x.b    | \u2014      | 6     | 5     |\n        | a.d.e  | 1      | 4     | 3     |\n        | a.b.c  | 1      | 2     | 1     |\n        \"\"\"\n    )", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_list_all_commits_test_list_all_commits.assert_rev_a_rev_b_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_list_all_commits_test_list_all_commits.assert_rev_a_rev_b_", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 270, "end_line": 281, "span_ids": ["test_list_all_commits"], "tokens": 132}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_list_all_commits(tmp_dir, scm):\n    tmp_dir.scm_gen(\"1\", \"1\", commit=\"1\")\n    rev_a = scm.get_rev()\n    tmp_dir.scm_gen(\"2\", \"2\", commit=\"2\")\n    rev_b = scm.get_rev()\n    scm.tag(\"tag\")\n    tmp_dir.scm_gen(\"3\", \"3\", commit=\"3\")\n    rev_c = scm.get_rev()\n    scm.gitpython.git.reset(rev_a, hard=True)\n    scm.set_ref(\"refs/foo/bar\", rev_c)\n\n    assert {rev_a, rev_b} == set(scm.list_all_commits())", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_ignore_remove_empty_test_ignore_remove_empty.assert_not_path_to_gitign": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_ignore_remove_empty_test_ignore_remove_empty.assert_not_path_to_gitign", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 284, "end_line": 303, "span_ids": ["test_ignore_remove_empty"], "tokens": 149}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_ignore_remove_empty(tmp_dir, scm, git):\n\n    test_entries = [\n        {\"entry\": \"/foo1\", \"path\": f\"{tmp_dir}/foo1\"},\n        {\"entry\": \"/foo2\", \"path\": f\"{tmp_dir}/foo2\"},\n    ]\n\n    path_to_gitignore = tmp_dir / \".gitignore\"\n\n    with open(path_to_gitignore, \"a\") as f:\n        for entry in test_entries:\n            f.write(entry[\"entry\"] + \"\\n\")\n\n    assert path_to_gitignore.exists()\n\n    git.ignore_remove(test_entries[0][\"path\"])\n    assert path_to_gitignore.exists()\n\n    git.ignore_remove(test_entries[1][\"path\"])\n    assert not path_to_gitignore.exists()", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_commit_no_verify_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/scm/test_git.py_test_commit_no_verify_", "embedding": null, "metadata": {"file_path": "tests/unit/scm/test_git.py", "file_name": "test_git.py", "file_type": "text/x-python", "category": "test", "start_line": 306, "end_line": 324, "span_ids": ["test_commit_no_verify"], "tokens": 161}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.skipif(\n    os.name == \"nt\", reason=\"Git hooks not supported on Windows\"\n)\n@pytest.mark.parametrize(\"hook\", [\"pre-commit\", \"commit-msg\"])\ndef test_commit_no_verify(tmp_dir, scm, git, hook):\n    import stat\n\n    hook_file = os.path.join(\".git\", \"hooks\", hook)\n    tmp_dir.gen(\n        hook_file, \"#!/usr/bin/env python\\nimport sys\\nsys.exit(1)\",\n    )\n    os.chmod(hook_file, stat.S_IREAD | stat.S_IWRITE | stat.S_IEXEC)\n\n    tmp_dir.gen(\"foo\", \"foo\")\n    git.add([\"foo\"])\n    with pytest.raises(SCMError):\n        git.commit(\"commit foo\")\n    git.commit(\"commit foo\", no_verify=True)", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_unhashable_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/stage/test_cache.py_test_unhashable_", "embedding": null, "metadata": {"file_path": "tests/unit/stage/test_cache.py", "file_name": "test_cache.py", "file_type": "text/x-python", "category": "test", "start_line": 211, "end_line": 233, "span_ids": ["test_unhashable"], "tokens": 181}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "@pytest.mark.parametrize(\n    \"kwargs\",\n    [\n        {},\n        {\"cmd\": \"cmd\"},\n        {\"cmd\": \"cmd\", \"deps\": [\"path\"]},\n        {\"cmd\": \"cmd\", \"outs\": [\"path\"]},\n        {\"always_changed\": True},\n    ],\n)\ndef test_unhashable(tmp_dir, dvc, mocker, kwargs):\n    from dvc.stage import Stage, create_stage\n    from dvc.stage.cache import RunCacheNotFoundError, StageCache\n\n    cache = StageCache(dvc)\n    stage = create_stage(Stage, path=\"stage.dvc\", repo=dvc, **kwargs)\n    get_stage_hash = mocker.patch(\"dvc.stage.cache._get_stage_hash\")\n    assert cache.save(stage) is None\n    assert get_stage_hash.not_called\n    with pytest.raises(RunCacheNotFoundError):\n        cache.restore(stage)\n    assert get_stage_hash.not_called", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_http.py_io_test_open_url.with_open_url_http_sa.assert_fd_read_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_http.py_io_test_open_url.with_open_url_http_sa.assert_fd_read_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 1, "end_line": 42, "span_ids": ["imports", "test_open_url", "read_nbytes"], "tokens": 319}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "import io\n\nimport requests\n\nfrom dvc.utils.http import open_url\n\n\ndef read_nbytes(fd, num, mode=\"r\"):\n    data = b\"\" if mode == \"rb\" else \"\"\n    while len(data) < num:\n        chunk = fd.read(num - len(data))\n        if not chunk:\n            break\n        data += chunk\n    return data\n\n\ndef test_open_url(tmp_path, monkeypatch, http):\n    # Simulate bad connection\n    original_iter_content = requests.Response.iter_content\n\n    def bad_iter_content(self, *args, **kwargs):\n        it = original_iter_content(self, *args, **kwargs)\n        for i, chunk in enumerate(it):\n            # Drop connection error on second chunk if there is one\n            if i > 0:\n                raise requests.ConnectionError(\"Simulated connection drop\")\n            yield chunk\n\n    monkeypatch.setattr(requests.Response, \"iter_content\", bad_iter_content)\n\n    # Text should be longer than default chunk to test resume,\n    # using twice of that plus something tests second resume,\n    # this is important because second response is different\n    text = \"0123456789\" * (io.DEFAULT_BUFFER_SIZE // 10 + 1)\n    http.gen(\"sample.txt\", text * 2)\n\n    with open_url((http / \"sample.txt\").url) as fd:\n        # Test various .read() variants\n        assert read_nbytes(fd, len(text), mode=\"r\") == text\n        assert fd.read() == text\n        assert fd.read() == \"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}, "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_http.py_test_open_url_peek_rb_": {"__data__": {"id_": "/home/jiayipan/code/24FA/temp/ml-01/moatless-tools/t/repos/swe-train_iterative__dvc/tests/unit/utils/test_http.py_test_open_url_peek_rb_", "embedding": null, "metadata": {"file_path": "tests/unit/utils/test_http.py", "file_name": "test_http.py", "file_type": "text/x-python", "category": "test", "start_line": 45, "end_line": 57, "span_ids": ["test_open_url_peek_rb"], "tokens": 143}, "excluded_embed_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date", "start_line", "end_line", "tokens"], "excluded_llm_metadata_keys": ["file_name", "file_type", "file_size", "creation_date", "last_modified_date", "last_accessed_date"], "relationships": {}, "text": "def test_open_url_peek_rb(tmp_path, monkeypatch, http):\n    # Goes over seek feature in 'rb' mode\n    text = \"0123456789\" * (io.DEFAULT_BUFFER_SIZE // 10 + 1)\n    http.gen(\"sample.txt\", text * 2)\n\n    with open_url((http / \"sample.txt\").url, mode=\"rb\") as fd:\n        text = text.encode(\"utf8\")\n        assert fd.peek(len(text)) == text\n        assert read_nbytes(fd, len(text), mode=\"rb\") == text\n        assert fd.peek(len(text)) == text\n        assert fd.read() == text\n        assert fd.read() == b\"\"", "start_char_idx": null, "end_char_idx": null, "text_template": "{metadata_str}\n\n{content}", "metadata_template": "{key}: {value}", "metadata_seperator": "\n", "class_name": "TextNode"}, "__type__": "1"}}}
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