Upload environment.yml

environment.yml

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+name: dnabert2
+channels:
+  - defaults
+  - conda-forge
+  - https://repo.anaconda.com/pkgs/main
+  - https://repo.anaconda.com/pkgs/r
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - ca-certificates=2024.12.14
+  - git-lfs=3.6.0
+  - ld_impl_linux-64=2.40
+  - libffi=3.4.4
+  - libgcc=14.2.0
+  - libgcc-ng=14.2.0
+  - libgomp=14.2.0
+  - libstdcxx-ng=11.2.0
+  - ncurses=6.4
+  - openssl=3.4.0
+  - pip=24.2
+  - python=3.8.20
+  - readline=8.2
+  - setuptools=75.1.0
+  - sqlite=3.45.3
+  - tk=8.6.14
+  - wheel=0.44.0
+  - xz=5.4.6
+  - zlib=1.2.13
+  - pip:
+      - absl-py==2.1.0
+      - accelerate==0.26.0
+      - aiohappyeyeballs==2.4.4
+      - aiohttp==3.10.11
+      - aiosignal==1.3.1
+      - annotated-types==0.7.0
+      - antlr4-python3-runtime==4.9.3
+      - async-timeout==5.0.1
+      - attrs==24.3.0
+      - cachetools==5.5.0
+      - certifi==2024.12.14
+      - charset-normalizer==3.4.1
+      - click==8.1.8
+      - cmake==3.31.2
+      - datasets==3.1.0
+      - dill==0.3.8
+      - docker-pycreds==0.4.0
+      - einops==0.6.1
+      - eval-type-backport==0.2.2
+      - evaluate==0.4.0
+      - filelock==3.16.1
+      - frozenlist==1.5.0
+      - fsspec==2024.9.0
+      - gitdb==4.0.11
+      - gitpython==3.1.43
+      - google-auth==2.37.0
+      - google-auth-oauthlib==1.0.0
+      - grpcio==1.68.1
+      - huggingface-hub==0.27.0
+      - idna==3.10
+      - importlib-metadata==8.5.0
+      - joblib==1.4.2
+      - markdown==3.7
+      - markupsafe==2.1.5
+      - multidict==6.1.0
+      - multiprocess==0.70.16
+      - ninja==1.11.1.3
+      - numpy==1.24.4
+      - nvidia-cublas-cu11==11.10.3.66
+      - nvidia-cuda-nvrtc-cu11==11.7.99
+      - nvidia-cuda-runtime-cu11==11.7.99
+      - nvidia-cudnn-cu11==8.5.0.96
+      - oauthlib==3.2.2
+      - omegaconf==2.3.0
+      - packaging==24.2
+      - pandas==2.0.3
+      - peft==0.3.0
+      - platformdirs==4.3.6
+      - propcache==0.2.0
+      - protobuf==3.20.3
+      - psutil==6.1.1
+      - pyarrow==17.0.0
+      - pyasn1==0.6.1
+      - pyasn1-modules==0.4.1
+      - pybind11==2.13.6
+      - pydantic==2.10.4
+      - pydantic-core==2.27.2
+      - python-dateutil==2.9.0.post0
+      - pytz==2024.2
+      - pyyaml==6.0.2
+      - regex==2024.11.6
+      - requests==2.32.3
+      - requests-oauthlib==2.0.0
+      - responses==0.18.0
+      - rsa==4.9
+      - safetensors==0.4.5
+      - scikit-learn==1.2.2
+      - scipy==1.10.1
+      - sentry-sdk==2.19.2
+      - setproctitle==1.3.4
+      - six==1.17.0
+      - smmap==5.0.1
+      - tensorboard==2.14.0
+      - tensorboard-data-server==0.7.2
+      - threadpoolctl==3.5.0
+      - tokenizers==0.13.3
+      - torch==1.13.1
+      - tqdm==4.67.1
+      - transformers==4.29.0
+      - typing-extensions==4.12.2
+      - tzdata==2024.2
+      - urllib3==2.2.3
+      - wandb==0.19.1
+      - werkzeug==3.0.6
+      - xxhash==3.5.0
+      - yarl==1.15.2
+      - zipp==3.20.2
+prefix: /data/hexiong.yang/anaconda3/envs/dnabert2