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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+noise-neuron_classification_model.skops filter=lfs diff=lfs merge=lfs -text

metadata.json

@@ -0,0 +1 @@
+{"subject_species": "mice", "brain_area": "V1,SC,ALM", "probe": {"name": "NP1.0"}}

model_info.json

@@ -0,0 +1,169 @@
+{
+    "metric_params": {
+            "quality_metric_params": {
+                "metric_names": [
+                    "amplitude_cutoff",
+                    "amplitude_cv",
+                    "amplitude_median",
+                    "d_prime",
+                    "drift",
+                    "firing_range",
+                    "firing_rate",
+                    "isi_violation",
+                    "isolation_distance",
+                    "l_ratio",
+                    "nearest_neighbor",
+                    "num_spikes",
+                    "presence_ratio",
+                    "rp_violation",
+                    "sd_ratio",
+                    "silhouette",
+                    "sliding_rp_violation",
+                    "snr",
+                    "synchrony"
+                ],
+                "peak_sign": null,
+                "seed": null,
+                "qm_params": {
+                    "presence_ratio": {
+                        "bin_duration_s": 60,
+                        "mean_fr_ratio_thresh": 0.0
+                    },
+                    "snr": {
+                        "peak_sign": "neg",
+                        "peak_mode": "extremum"
+                    },
+                    "isi_violation": {
+                        "isi_threshold_ms": 1.5,
+                        "min_isi_ms": 0
+                    },
+                    "rp_violation": {
+                        "refractory_period_ms": 1.0,
+                        "censored_period_ms": 0.0
+                    },
+                    "sliding_rp_violation": {
+                        "min_spikes": 0,
+                        "bin_size_ms": 0.25,
+                        "window_size_s": 1,
+                        "exclude_ref_period_below_ms": 0.5,
+                        "max_ref_period_ms": 10,
+                        "contamination_values": null
+                    },
+                    "synchrony": {
+                        "synchrony_sizes": [
+                            2,
+                            4,
+                            8
+                        ]
+                    },
+                    "firing_range": {
+                        "bin_size_s": 5,
+                        "percentiles": [
+                            5,
+                            95
+                        ]
+                    },
+                    "amplitude_cv": {
+                        "average_num_spikes_per_bin": 50,
+                        "percentiles": [
+                            5,
+                            95
+                        ],
+                        "min_num_bins": 10,
+                        "amplitude_extension": "spike_amplitudes"
+                    },
+                    "amplitude_cutoff": {
+                        "peak_sign": "neg",
+                        "num_histogram_bins": 100,
+                        "histogram_smoothing_value": 3,
+                        "amplitudes_bins_min_ratio": 5
+                    },
+                    "amplitude_median": {
+                        "peak_sign": "neg"
+                    },
+                    "drift": {
+                        "interval_s": 60,
+                        "min_spikes_per_interval": 100,
+                        "direction": "y",
+                        "min_num_bins": 2
+                    },
+                    "nearest_neighbor": {
+                        "max_spikes": 10000,
+                        "n_neighbors": 5
+                    },
+                    "nn_isolation": {
+                        "max_spikes": 10000,
+                        "min_spikes": 10,
+                        "min_fr": 0.0,
+                        "n_neighbors": 4,
+                        "n_components": 10,
+                        "radius_um": 100,
+                        "peak_sign": "neg"
+                    },
+                    "nn_noise_overlap": {
+                        "max_spikes": 10000,
+                        "min_spikes": 10,
+                        "min_fr": 0.0,
+                        "n_neighbors": 4,
+                        "n_components": 10,
+                        "radius_um": 100,
+                        "peak_sign": "neg"
+                    },
+                    "silhouette": {
+                        "method": [
+                            "simplified"
+                        ]
+                    }
+                },
+                "skip_pc_metrics": false
+            },
+            "template_metric_params": {
+                "metric_names": [
+                    "half_width",
+                    "num_negative_peaks",
+                    "num_positive_peaks",
+                    "peak_to_valley",
+                    "peak_trough_ratio",
+                    "recovery_slope",
+                    "repolarization_slope"
+                ],
+                "sparsity": null,
+                "peak_sign": "neg",
+                "upsampling_factor": 10,
+                "metrics_kwargs": {
+                    "recovery_window_ms": 0.7,
+                    "peak_relative_threshold": 0.2,
+                    "peak_width_ms": 0.1,
+                    "depth_direction": "y",
+                    "min_channels_for_velocity": 5,
+                    "min_r2_velocity": 0.5,
+                    "exp_peak_function": "ptp",
+                    "min_r2_exp_decay": 0.5,
+                    "spread_threshold": 0.2,
+                    "spread_smooth_um": 20,
+                    "column_range": null
+                }
+        }
+    },
+    "requirements": {
+        "spikeinterface": "0.100.1",
+        "scikit-learn": "1.3.2"
+    },
+    "label_conversion": {
+        "0": "neuron",
+        "1": "noise"
+    },
+    "additional_required_files": {
+        "filename": "cascaded_classifier.py"
+    },
+    "untrusted_types_imports": {
+        "untrusted_types": [
+            "numpy.dtype",
+            "sklearn.metrics._classification.balanced_accuracy_score",
+            "sklearn.metrics._scorer._PredictScorer",
+            "sklearn.model_selection._search_successive_halving.HalvingGridSearchCV",
+            "sklearn.model_selection._split.StratifiedKFold",
+            "__main__.CascadedClassifier"
+        ]
+    }
+}

noise-neuron_classification_model.skops

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b1f3442fa49b839001ad8f7beaed2d51c22e0c44e5af2a31f80895bd955f88de
+size 11396945