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- README.md +29 -0
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- model.pt +3 -0
.gitattributes
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model.pt filter=lfs diff=lfs merge=lfs -text
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README.md
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---
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language:
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- en
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metrics:
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- accuracy
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- AUC ROC
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- precision
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- recall
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tags:
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- biology
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- chemistry
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- therapeutic science
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- drug design
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- drug development
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- therapeutics
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library_name: tdc
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license: bsd-2-clause
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---
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COMING SOON
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weights extracted from https://cellxgene.cziscience.com/census-models
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## Model description
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Single-cell variational inference (scVI) is a powerful tool for the probabilistic analysis of single-cell transcriptomics data. It uses deep generative models to address technical noise and batch effects, providing a robust framework for various downstream analysis tasks.
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To load the pre-trained model, use the Files and Versions tab files.
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## References
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* Lopez, R., Regier, J., Cole, M., Jordan, M. I., & Yosef, N. (2018). Deep Generative Modeling for Single-cell Transcriptomics. Nature Methods, 15, 1053-1058.
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* Gayoso, A., Lopez, R., Xing, G., Boyeau, P., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., Liu, Y., Samaran, J., Misrachi, G., Nazaret, A., Clivio, O., Xu, C. A., Ashuach, T., Lotfollahi, M., Svensson, V., Beltrame, E., Talavera-L贸pez, C., ... Yosef, N. (2021). scvi-tools: a library for deep probabilistic analysis of single-cell omics data. bioRxiv.
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* CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data CZI Single-Cell Biology, et al. bioRxiv 2023.10.30; doi: https://doi.org/10.1101/2023.10.30.563174
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*.mlmodel filter=lfs diff=lfs merge=lfs -text
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*.model filter=lfs diff=lfs merge=lfs -text
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model.pt
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version https://git-lfs.github.com/spec/v1
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size 429592148
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