avelezarce commited on
Commit
2510a05
verified
1 Parent(s): cd60b26

Upload 3 files

Browse files
Files changed (4) hide show
  1. .gitattributes +1 -0
  2. README.md +29 -0
  3. gitattributes +36 -0
  4. model.pt +3 -0
.gitattributes ADDED
@@ -0,0 +1 @@
 
 
1
+ model.pt filter=lfs diff=lfs merge=lfs -text
README.md ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ language:
3
+ - en
4
+ metrics:
5
+ - accuracy
6
+ - AUC ROC
7
+ - precision
8
+ - recall
9
+ tags:
10
+ - biology
11
+ - chemistry
12
+ - therapeutic science
13
+ - drug design
14
+ - drug development
15
+ - therapeutics
16
+ library_name: tdc
17
+ license: bsd-2-clause
18
+ ---
19
+ COMING SOON
20
+ weights extracted from https://cellxgene.cziscience.com/census-models
21
+
22
+ ## Model description
23
+ Single-cell variational inference (scVI) is a powerful tool for the probabilistic analysis of single-cell transcriptomics data. It uses deep generative models to address technical noise and batch effects, providing a robust framework for various downstream analysis tasks.
24
+ To load the pre-trained model, use the Files and Versions tab files.
25
+
26
+ ## References
27
+ * Lopez, R., Regier, J., Cole, M., Jordan, M. I., & Yosef, N. (2018). Deep Generative Modeling for Single-cell Transcriptomics. Nature Methods, 15, 1053-1058.
28
+ * Gayoso, A., Lopez, R., Xing, G., Boyeau, P., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., Liu, Y., Samaran, J., Misrachi, G., Nazaret, A., Clivio, O., Xu, C. A., Ashuach, T., Lotfollahi, M., Svensson, V., Beltrame, E., Talavera-L贸pez, C., ... Yosef, N. (2021). scvi-tools: a library for deep probabilistic analysis of single-cell omics data. bioRxiv.
29
+ * CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data CZI Single-Cell Biology, et al. bioRxiv 2023.10.30; doi: https://doi.org/10.1101/2023.10.30.563174
gitattributes ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ *.7z filter=lfs diff=lfs merge=lfs -text
2
+ *.arrow filter=lfs diff=lfs merge=lfs -text
3
+ *.bin filter=lfs diff=lfs merge=lfs -text
4
+ *.bz2 filter=lfs diff=lfs merge=lfs -text
5
+ *.ckpt filter=lfs diff=lfs merge=lfs -text
6
+ *.ftz filter=lfs diff=lfs merge=lfs -text
7
+ *.gz filter=lfs diff=lfs merge=lfs -text
8
+ *.h5 filter=lfs diff=lfs merge=lfs -text
9
+ *.joblib filter=lfs diff=lfs merge=lfs -text
10
+ *.lfs.* filter=lfs diff=lfs merge=lfs -text
11
+ *.mlmodel filter=lfs diff=lfs merge=lfs -text
12
+ *.model filter=lfs diff=lfs merge=lfs -text
13
+ *.msgpack filter=lfs diff=lfs merge=lfs -text
14
+ *.npy filter=lfs diff=lfs merge=lfs -text
15
+ *.npz filter=lfs diff=lfs merge=lfs -text
16
+ *.onnx filter=lfs diff=lfs merge=lfs -text
17
+ *.ot filter=lfs diff=lfs merge=lfs -text
18
+ *.parquet filter=lfs diff=lfs merge=lfs -text
19
+ *.pb filter=lfs diff=lfs merge=lfs -text
20
+ *.pickle filter=lfs diff=lfs merge=lfs -text
21
+ *.pkl filter=lfs diff=lfs merge=lfs -text
22
+ *.pt filter=lfs diff=lfs merge=lfs -text
23
+ *.pth filter=lfs diff=lfs merge=lfs -text
24
+ *.rar filter=lfs diff=lfs merge=lfs -text
25
+ *.safetensors filter=lfs diff=lfs merge=lfs -text
26
+ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
27
+ *.tar.* filter=lfs diff=lfs merge=lfs -text
28
+ *.tar filter=lfs diff=lfs merge=lfs -text
29
+ *.tflite filter=lfs diff=lfs merge=lfs -text
30
+ *.tgz filter=lfs diff=lfs merge=lfs -text
31
+ *.wasm filter=lfs diff=lfs merge=lfs -text
32
+ *.xz filter=lfs diff=lfs merge=lfs -text
33
+ *.zip filter=lfs diff=lfs merge=lfs -text
34
+ *.zst filter=lfs diff=lfs merge=lfs -text
35
+ *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ adata.h5ad filter=lfs diff=lfs merge=lfs -text
model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dbdef0eee5f0181c10cc3566c8564bc588d07152f9fb3de5fda78f4932745547
3
+ size 429592148