diff --git "a/Code_for_training_.ipynb" "b/Code_for_training_.ipynb" new file mode 100644--- /dev/null +++ "b/Code_for_training_.ipynb" @@ -0,0 +1,13973 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "id": "eiQ3FKJDhBW0" + }, + "source": [ + "NLP EXERCISE: TEXT-CLASSIFICATION ON A DRUG DATASET.\n", + "\n", + "DATA WRANGLING, FINE-TUNING AND PUSHING THE MODEL TO THE HUGGING-FACE HUB" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "id": "HedrkDuchBW2" + }, + "outputs": [], + "source": [ + "#let's install the necessary libraries from Hugging Face\n", + "!pip install datasets evaluate transformers[sentencepiece] transformers[torch]" + ] + }, + { + "cell_type": "code", + "source": [ + "from huggingface_hub import notebook_login\n", + "#authenticate into the huggin face\n", + "notebook_login()" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 145, + "referenced_widgets": [ + "d02e8f7bdeb145d4bae8ebcbceab2e72", + "6db4a180376840d6aa8e38c46033cc93", + "893c0a9c9b51450d99c360a44aee61d4", + "3def0a68df05423baf2effef91ff64d0", + "3b78ea24be0c42ea8074a48ae4671e12", + "50b3cf9cb0c742f2907423f456e9863f", + "d252a4002a8d434db262f5056860c5c9", + "319deda6147e44ac9e1f53a75f6fdd41", + "bfe9fdcac47c4ba8b26b54a8d588afd7", + "ba29ea12a9ce4a099992df57d4b851c2", + "c5bb554a9f0e4b9b8178a25ed1fb1344", + "9d6442503c794161bf927884aaac959e", + "69f29945f16842d3bffea0b0dd50921e", + "948a520ec0e742868f2f61f00c329f0f", + "b9d706620bf24817b391cd76ee0a0866", + "a536259beed540aabdabbe694515eb56", + "b5089fdb55134b7a840d882b2488b658", + "2d7b18bfad5c45ccbce5edbc8adc364c", + "4515e7be5a5d4e0a83e7d3717eebe626", + "0ac78e74c26044faa5a484cf5e658856", + "a9cc217968cb447e875c25a60472bfea", + "4e2105e83c4743428555be2aa7f4076e", + "1160eec48195412ab7f7f9d29dcf4673", + "6b1e242e660649f0b00d75c419569e25", + "04c5b7bde3b840919d3ad3e1e04f7c6f", + "9fffc2e7f3654cc3addfe5a786d32620", + "120d065f31614ae395a30f3fdadf5b79", + "dd54337179ed44fca73911f7177896a7", + "fc4149e666d940fead7acb14b6ed0ff7", + "da5f42f0817e407bbd9cb7001970d92b", + "2d508ef9a1304e40b725c03774c4a8d6", + "241d70158ae740f0ba73be9f2b633801" + ] + }, + "id": "Z4IolwVzaQQh", + "outputId": "c5901a51-7f5f-4ad9-b90d-0cbb1b8c381a" + }, + "execution_count": 2, + "outputs": [ + { + "output_type": "display_data", + "data": { + "text/plain": [ + "VBox(children=(HTML(value='
] 41.00M 37.7MB/s in 1.1s \n", + "\n", + "2024-04-30 14:10:47 (37.7 MB/s) - ‘drugsCom_raw.zip’ saved [42989872]\n", + "\n", + "Archive: drugsCom_raw.zip\n", + " inflating: drugsComTest_raw.tsv \n", + " inflating: drugsComTrain_raw.tsv \n" + ] + } + ] + }, + { + "cell_type": "code", + "source": [ + "from datasets import load_dataset\n", + "\n", + "#save the data into a csv file with both splits\n", + "data_files = {\"train\": \"drugsComTrain_raw.tsv\", \"test\": \"drugsComTest_raw.tsv\"}\n", + "# \\t is the tab character in Python\n", + "drug_dataset = load_dataset(\"csv\", data_files=data_files, delimiter=\"\\t\")\n", + "\n", + "drug_dataset" + ], + "metadata": { + "id": "yifIkdVzj1kS", + "colab": { + "base_uri": "https://localhost:8080/", + "height": 258, + "referenced_widgets": [ + "4513ab68f3634e56946c81612a31da0e", + "383098fd04ed4c6c9ca939bd55db8794", + "9676cf2dc3074073a61be1c633d3d297", + "e9a050291a3a436899ed9fbd382f5213", + "dcf2f70dc8ae4965bfe295f256c18704", + 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"4513ab68f3634e56946c81612a31da0e" + } + }, + "metadata": {} + }, + { + "output_type": "display_data", + "data": { + "text/plain": [ + "Generating test split: 0 examples [00:00, ? examples/s]" + ], + "application/vnd.jupyter.widget-view+json": { + "version_major": 2, + "version_minor": 0, + "model_id": "76fa80d167b84f1cb3d87486f5bffaad" + } + }, + "metadata": {} + }, + { + "output_type": "execute_result", + "data": { + "text/plain": [ + "DatasetDict({\n", + " train: Dataset({\n", + " features: ['Unnamed: 0', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", + " num_rows: 161297\n", + " })\n", + " test: Dataset({\n", + " features: ['Unnamed: 0', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", + " num_rows: 53766\n", + " })\n", + "})" + ] + }, + "metadata": {}, + "execution_count": 4 + } + ] + }, + { + "cell_type": "code", + "source": [ + "# Randomize the order of the rows within each split\n", + "def randomize_dataset(dataset):\n", + " for split in dataset.keys():\n", + " shuffled_dataset = dataset[split].shuffle()\n", + " dataset[split] = shuffled_dataset\n", + " return dataset\n", + "\n", + "drug_dataset = randomize_dataset(drug_dataset)" + ], + "metadata": { + "id": "5JkAVnitqs1l" + }, + "execution_count": 5, + "outputs": [] + }, + { + "cell_type": "code", + "source": [ + "#rename columns\n", + "drug_dataset = drug_dataset.rename_column(\n", + " original_column_name=\"Unnamed: 0\", new_column_name=\"patient_id\"\n", + ")\n", + "drug_dataset" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "EOOatck3rwmY", + "outputId": "71de605f-e3ea-4080-b86a-adbf29e2728b" + }, + "execution_count": 6, + "outputs": [ + { + "output_type": "execute_result", + "data": { + "text/plain": [ + "DatasetDict({\n", + " train: Dataset({\n", + " features: ['patient_id', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", + " num_rows: 161297\n", + " })\n", + " test: Dataset({\n", + " features: ['patient_id', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", + " num_rows: 53766\n", + " })\n", + "})" + ] + }, + "metadata": {}, + "execution_count": 6 + } + ] + }, + { + "cell_type": "code", + "source": [ + "#remove rows where the condition feature has no data\n", + "drug_dataset = drug_dataset.filter(lambda x: x[\"condition\"] is not None)" + ], + "metadata": { + "id": "cZzYLJphrw6W", + "colab": { + "base_uri": "https://localhost:8080/", + "height": 81, + "referenced_widgets": [ + "2d17144cc7824d96bd47fb37177c13ea", + "ec52abe8b3824ec29bec7d98abe60461", + "028f11273bb541a7bfd02860c5385954", + "9dbc508a1b8f4246baf13464bc332b5a", + "de688474003c4d72b0deffedae510792", + "99b9e7cc5b4846faa9db29339844a43f", + "10f3a308a3e14df99910a5532843222d", + "181be910862d414781f7764b71fa6e27", + "43e310819c884fef97cd802d02895b41", + "2941d75f5b324080b0f45d03018bc11d", + "5168664495884858b3804005791d3fe2", + "cd5133bf1421483caf1154a6df4db62f", + 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